HEADER ANTITOXIN 13-APR-26 25OY TITLE CRYSTAL STRUCTURE ANALYSIS OF THE SHORT-CHAIN DEHYDROGENASE/REDUCTASE TITLE 2 GOSDR FOR PATULIN DETOXIFICATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: SDR FAMILY OXIDOREDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GLUCONOBACTER OXYDANS; SOURCE 3 ORGANISM_TAXID: 442; SOURCE 4 GENE: HKD20_09115; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PATULIN; SHORT-CHAIN DEHYDROGENASES/REDUCTASES; GOSDR; CRYSTAL KEYWDS 2 STRUCTURE; MOLECULAR MECHANISM, ANTITOXIN EXPDTA X-RAY DIFFRACTION AUTHOR M.M.LIU,L.H.DAI,Y.M.HU REVDAT 1 07-OCT-26 25OY 0 JRNL AUTH L.H.DAI,H.LI JRNL TITL STRUCTURE-BASED RATIONAL DESIGN OF A SHORT-CHAIN JRNL TITL 2 DEHYDROGENASE/REDUCTASE FOR IMPROVING ACTIVITY TOWARD JRNL TITL 3 MYCOTOXIN PATULIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.23 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 73106 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3798 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.98 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.03 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5058 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.64 REMARK 3 BIN R VALUE (WORKING SET) : 0.2460 REMARK 3 BIN FREE R VALUE SET COUNT : 255 REMARK 3 BIN FREE R VALUE : 0.2750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3782 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 272 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.55000 REMARK 3 B22 (A**2) : 0.55000 REMARK 3 B33 (A**2) : -1.77000 REMARK 3 B12 (A**2) : 0.27000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.092 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.091 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.066 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.396 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3902 ; 0.013 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3670 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5312 ; 1.883 ; 1.658 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8492 ; 1.539 ; 1.582 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 510 ; 6.653 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 154 ;33.262 ;23.636 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 616 ;13.938 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;27.686 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 554 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4391 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 774 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2046 ; 3.724 ; 4.051 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2045 ; 3.722 ; 4.051 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2554 ; 4.404 ; 6.053 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2555 ; 4.404 ; 6.053 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1856 ; 5.058 ; 4.485 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1857 ; 5.057 ; 4.485 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2759 ; 6.928 ; 6.560 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4383 ; 8.261 ;49.837 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4350 ; 8.256 ;49.616 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 25OY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 17-APR-26. REMARK 100 THE DEPOSITION ID IS D_1300072769. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-OCT-25 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPX REMARK 200 DATA SCALING SOFTWARE : SAINT REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 76904 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980 REMARK 200 RESOLUTION RANGE LOW (A) : 49.230 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 19.19 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 36.0700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 76.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.5 M NACL, 0.12 M BIS-TRIS, PH 7.0, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 93.03900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 53.71609 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 55.59067 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 93.03900 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 53.71609 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 55.59067 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 93.03900 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 53.71609 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 55.59067 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 93.03900 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 53.71609 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 55.59067 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 93.03900 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 53.71609 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 55.59067 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 93.03900 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 53.71609 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 55.59067 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 107.43218 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 111.18133 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 107.43218 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 111.18133 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 107.43218 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 111.18133 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 107.43218 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 111.18133 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 107.43218 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 111.18133 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 107.43218 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 111.18133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 17170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -99.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 93.03900 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 53.71609 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 55.59067 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 422 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 130 CD GLU A 130 OE1 -0.071 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 234 NE - CZ - NH1 ANGL. DEV. = 6.8 DEGREES REMARK 500 ARG B 234 NE - CZ - NH2 ANGL. DEV. = -6.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 19 -135.04 48.52 REMARK 500 ASN A 41 -65.66 -106.63 REMARK 500 VAL A 145 -136.71 -116.98 REMARK 500 PHE A 155 -12.24 79.11 REMARK 500 SER A 238 -111.06 -135.79 REMARK 500 ASN B 41 -78.40 -101.06 REMARK 500 LYS B 103 144.04 -173.65 REMARK 500 ALA B 121 -60.11 -106.27 REMARK 500 VAL B 145 -137.96 -115.72 REMARK 500 PHE B 155 -11.59 80.31 REMARK 500 SER B 238 -110.70 -136.60 REMARK 500 ASN B 251 10.92 -149.45 REMARK 500 REMARK 500 REMARK: NULL DBREF1 25OY A 1 257 UNP A0AB35ARV2_GLUOY DBREF2 25OY A A0AB35ARV2 1 257 DBREF1 25OY B 1 257 UNP A0AB35ARV2_GLUOY DBREF2 25OY B A0AB35ARV2 1 257 SEQRES 1 A 257 MET ALA ASP HIS SER ILE LYS GLY LYS THR ALA LEU ILE SEQRES 2 A 257 THR GLY GLY ALA LYS ASN LEU GLY GLY LEU ILE ALA LEU SEQRES 3 A 257 ASP LEU ALA ALA GLN GLY ALA ALA ALA ILE ALA ILE HIS SEQRES 4 A 257 TYR ASN SER ALA ALA THR ARG PRO ASP ALA GLU ALA THR SEQRES 5 A 257 VAL THR ALA LEU LYS MET GLN GLY VAL ARG ALA GLN ALA SEQRES 6 A 257 PHE GLN ALA ASP LEU THR THR ALA ALA ALA ASN GLU LYS SEQRES 7 A 257 LEU PHE THR ASP VAL VAL ALA ALA LEU GLY LYS PRO ASP SEQRES 8 A 257 ILE ALA ILE ASN THR ALA GLY LYS VAL LEU LYS LYS LEU SEQRES 9 A 257 ILE LEU GLU THR SER GLU ASP GLU TYR ASP GLU MET PHE SEQRES 10 A 257 ALA ILE ASN ALA LYS ALA ALA TYR PHE PHE ILE LYS GLU SEQRES 11 A 257 ALA GLY ARG HIS LEU ASN ASP ASN GLY LYS LEU VAL THR SEQRES 12 A 257 ILE VAL THR SER LEU LEU GLY ALA TYR THR PRO PHE TYR SEQRES 13 A 257 SER THR TYR ALA GLY SER LYS ALA ALA VAL GLU HIS VAL SEQRES 14 A 257 THR ARG ALA ALA SER LYS GLU PHE GLY ALA ARG GLY ILE SEQRES 15 A 257 SER VAL ASN ALA ILE GLY PRO GLY PRO MET ASP THR PRO SEQRES 16 A 257 PHE PHE TYR GLY GLN GLU ALA PRO GLU ALA VAL ALA TYR SEQRES 17 A 257 HIS LYS THR ALA ALA ALA LEU SER SER LEU SER LYS THR SEQRES 18 A 257 GLY LEU THR ASP ILE GLU ASP ILE VAL PRO ILE VAL ARG SEQRES 19 A 257 CYS LEU VAL SER ASP GLY TRP TRP MET THR GLY GLN THR SEQRES 20 A 257 ILE LEU VAL ASN GLY GLY TYR THR THR LYS SEQRES 1 B 257 MET ALA ASP HIS SER ILE LYS GLY LYS THR ALA LEU ILE SEQRES 2 B 257 THR GLY GLY ALA LYS ASN LEU GLY GLY LEU ILE ALA LEU SEQRES 3 B 257 ASP LEU ALA ALA GLN GLY ALA ALA ALA ILE ALA ILE HIS SEQRES 4 B 257 TYR ASN SER ALA ALA THR ARG PRO ASP ALA GLU ALA THR SEQRES 5 B 257 VAL THR ALA LEU LYS MET GLN GLY VAL ARG ALA GLN ALA SEQRES 6 B 257 PHE GLN ALA ASP LEU THR THR ALA ALA ALA ASN GLU LYS SEQRES 7 B 257 LEU PHE THR ASP VAL VAL ALA ALA LEU GLY LYS PRO ASP SEQRES 8 B 257 ILE ALA ILE ASN THR ALA GLY LYS VAL LEU LYS LYS LEU SEQRES 9 B 257 ILE LEU GLU THR SER GLU ASP GLU TYR ASP GLU MET PHE SEQRES 10 B 257 ALA ILE ASN ALA LYS ALA ALA TYR PHE PHE ILE LYS GLU SEQRES 11 B 257 ALA GLY ARG HIS LEU ASN ASP ASN GLY LYS LEU VAL THR SEQRES 12 B 257 ILE VAL THR SER LEU LEU GLY ALA TYR THR PRO PHE TYR SEQRES 13 B 257 SER THR TYR ALA GLY SER LYS ALA ALA VAL GLU HIS VAL SEQRES 14 B 257 THR ARG ALA ALA SER LYS GLU PHE GLY ALA ARG GLY ILE SEQRES 15 B 257 SER VAL ASN ALA ILE GLY PRO GLY PRO MET ASP THR PRO SEQRES 16 B 257 PHE PHE TYR GLY GLN GLU ALA PRO GLU ALA VAL ALA TYR SEQRES 17 B 257 HIS LYS THR ALA ALA ALA LEU SER SER LEU SER LYS THR SEQRES 18 B 257 GLY LEU THR ASP ILE GLU ASP ILE VAL PRO ILE VAL ARG SEQRES 19 B 257 CYS LEU VAL SER ASP GLY TRP TRP MET THR GLY GLN THR SEQRES 20 B 257 ILE LEU VAL ASN GLY GLY TYR THR THR LYS HET NAP A 301 48 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 3 NAP C21 H28 N7 O17 P3 FORMUL 4 HOH *272(H2 O) HELIX 1 AA1 LYS A 18 GLN A 31 1 14 HELIX 2 AA2 SER A 42 ALA A 44 5 3 HELIX 3 AA3 THR A 45 GLN A 59 1 15 HELIX 4 AA4 THR A 72 GLY A 88 1 17 HELIX 5 AA5 LEU A 104 THR A 108 5 5 HELIX 6 AA6 SER A 109 ALA A 121 1 13 HELIX 7 AA7 ALA A 121 LEU A 135 1 15 HELIX 8 AA8 THR A 146 ALA A 151 5 6 HELIX 9 AA9 TYR A 156 GLY A 178 1 23 HELIX 10 AB1 ALA A 179 GLY A 181 5 3 HELIX 11 AB2 THR A 194 GLY A 199 1 6 HELIX 12 AB3 ALA A 202 LYS A 210 1 9 HELIX 13 AB4 LEU A 215 SER A 219 5 5 HELIX 14 AB5 ASP A 225 ASP A 228 5 4 HELIX 15 AB6 ILE A 229 VAL A 237 1 9 HELIX 16 AB7 LYS B 18 GLN B 31 1 14 HELIX 17 AB8 SER B 42 ALA B 44 5 3 HELIX 18 AB9 THR B 45 MET B 58 1 14 HELIX 19 AC1 THR B 72 GLY B 88 1 17 HELIX 20 AC2 LEU B 104 THR B 108 5 5 HELIX 21 AC3 SER B 109 ALA B 121 1 13 HELIX 22 AC4 ALA B 121 LEU B 135 1 15 HELIX 23 AC5 THR B 146 ALA B 151 5 6 HELIX 24 AC6 TYR B 156 GLY B 178 1 23 HELIX 25 AC7 ALA B 179 GLY B 181 5 3 HELIX 26 AC8 THR B 194 GLU B 201 1 8 HELIX 27 AC9 ALA B 202 LYS B 210 1 9 HELIX 28 AD1 LEU B 215 SER B 219 5 5 HELIX 29 AD2 ASP B 225 ASP B 228 5 4 HELIX 30 AD3 ILE B 229 VAL B 237 1 9 SHEET 1 AA1 7 ARG A 62 GLN A 67 0 SHEET 2 AA1 7 ALA A 35 TYR A 40 1 N ILE A 38 O GLN A 64 SHEET 3 AA1 7 THR A 10 ILE A 13 1 N ILE A 13 O HIS A 39 SHEET 4 AA1 7 ILE A 92 ASN A 95 1 O ILE A 94 N LEU A 12 SHEET 5 AA1 7 LYS A 140 ILE A 144 1 O ILE A 144 N ASN A 95 SHEET 6 AA1 7 SER A 183 PRO A 189 1 O SER A 183 N LEU A 141 SHEET 7 AA1 7 THR A 247 VAL A 250 1 O ILE A 248 N GLY A 188 SHEET 1 AA2 7 ARG B 62 GLN B 67 0 SHEET 2 AA2 7 ALA B 35 TYR B 40 1 N ILE B 38 O GLN B 64 SHEET 3 AA2 7 THR B 10 ILE B 13 1 N ALA B 11 O ALA B 37 SHEET 4 AA2 7 ILE B 92 ASN B 95 1 O ILE B 94 N LEU B 12 SHEET 5 AA2 7 LYS B 140 ILE B 144 1 O LYS B 140 N ALA B 93 SHEET 6 AA2 7 SER B 183 PRO B 189 1 O SER B 183 N LEU B 141 SHEET 7 AA2 7 THR B 247 VAL B 250 1 O ILE B 248 N GLY B 188 CRYST1 186.078 186.078 166.772 90.00 90.00 120.00 H 3 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005374 0.003103 0.000000 0.00000 SCALE2 0.000000 0.006205 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005996 0.00000 CONECT 3785 3786 3787 3788 3807 CONECT 3786 3785 CONECT 3787 3785 CONECT 3788 3785 3789 CONECT 3789 3788 3790 CONECT 3790 3789 3791 3792 CONECT 3791 3790 3796 CONECT 3792 3790 3793 3794 CONECT 3793 3792 CONECT 3794 3792 3795 3796 CONECT 3795 3794 3829 CONECT 3796 3791 3794 3797 CONECT 3797 3796 3798 3806 CONECT 3798 3797 3799 CONECT 3799 3798 3800 CONECT 3800 3799 3801 3806 CONECT 3801 3800 3802 3803 CONECT 3802 3801 CONECT 3803 3801 3804 CONECT 3804 3803 3805 CONECT 3805 3804 3806 CONECT 3806 3797 3800 3805 CONECT 3807 3785 3808 CONECT 3808 3807 3809 3810 3811 CONECT 3809 3808 CONECT 3810 3808 CONECT 3811 3808 3812 CONECT 3812 3811 3813 CONECT 3813 3812 3814 3815 CONECT 3814 3813 3819 CONECT 3815 3813 3816 3817 CONECT 3816 3815 CONECT 3817 3815 3818 3819 CONECT 3818 3817 CONECT 3819 3814 3817 3820 CONECT 3820 3819 3821 3828 CONECT 3821 3820 3822 CONECT 3822 3821 3823 3826 CONECT 3823 3822 3824 3825 CONECT 3824 3823 CONECT 3825 3823 CONECT 3826 3822 3827 CONECT 3827 3826 3828 CONECT 3828 3820 3827 CONECT 3829 3795 3830 3831 3832 CONECT 3830 3829 CONECT 3831 3829 CONECT 3832 3829 MASTER 383 0 1 30 14 0 0 6 4102 2 48 40 END