HEADER OXIDOREDUCTASE 16-APR-26 25RU TITLE CRYSTAL STRUCTURE OF IPHB FROM COMAMONAS TESTOSTERONI KF1 IN COMPLEX TITLE 2 WITH NADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: SHORT-CHAIN DEHYDROGENASE/REDUCTASE SDR; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: COMAMONAS TESTOSTERONI KF-1; SOURCE 3 ORGANISM_TAXID: 399795; SOURCE 4 GENE: CTESDRAFT_PD2137; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS DEHYDROGENASE, BACTERIAL PROTEIN, OXIDOREDUCTASE, SDR EXPDTA X-RAY DIFFRACTION AUTHOR M.SHARMA,J.K.MAHTO,K.JANGID,P.KUMAR REVDAT 1 14-OCT-26 25RU 0 JRNL AUTH M.SHARMA,J.K.MAHTO,K.JANGID,P.KUMAR JRNL TITL CRYSTAL STRUCTURE OF IPHB FROM COMAMONAS TESTOSTERONI KF1 IN JRNL TITL 2 COMPLEX WITH NADP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0431 (REFMACAT 0.4.126) REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 41718 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.136 REMARK 3 FREE R VALUE : 0.177 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.919 REMARK 3 FREE R VALUE TEST SET COUNT : 2052 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2886 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1530 REMARK 3 BIN FREE R VALUE SET COUNT : 138 REMARK 3 BIN FREE R VALUE : 0.1970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3542 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 264 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.00100 REMARK 3 B22 (A**2) : 0.11500 REMARK 3 B33 (A**2) : 0.88600 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.228 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.102 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.068 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.912 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3685 ; 0.009 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 3483 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5008 ; 1.689 ; 1.779 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7946 ; 0.591 ; 1.727 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 490 ; 6.912 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 31 ;10.827 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 550 ;13.806 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 582 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4505 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 868 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 751 ; 0.228 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 226 ; 0.180 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1830 ; 0.177 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 163 ; 0.152 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1957 ; 2.213 ; 0.883 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1957 ; 2.209 ; 0.883 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2442 ; 3.518 ; 1.580 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2443 ; 3.519 ; 1.580 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1728 ; 3.218 ; 1.107 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1729 ; 3.217 ; 1.108 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2564 ; 4.859 ; 1.941 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2565 ; 4.858 ; 1.942 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 7168 ; 3.110 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 4 A 259 NULL REMARK 3 1 B 4 B 259 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 259 REMARK 3 ORIGIN FOR THE GROUP (A): -25.7074 -21.4057 12.8559 REMARK 3 T TENSOR REMARK 3 T11: 0.0269 T22: 0.0241 REMARK 3 T33: 0.0179 T12: -0.0097 REMARK 3 T13: 0.0109 T23: 0.0009 REMARK 3 L TENSOR REMARK 3 L11: 1.0853 L22: 1.7234 REMARK 3 L33: 0.6926 L12: 0.0105 REMARK 3 L13: -0.0359 L23: -0.1389 REMARK 3 S TENSOR REMARK 3 S11: -0.0309 S12: 0.1211 S13: 0.0540 REMARK 3 S21: -0.1526 S22: 0.0154 S23: -0.1492 REMARK 3 S31: -0.0792 S32: 0.0335 S33: 0.0154 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 259 REMARK 3 ORIGIN FOR THE GROUP (A): -24.8954 -54.3246 17.3667 REMARK 3 T TENSOR REMARK 3 T11: 0.0228 T22: 0.0272 REMARK 3 T33: 0.0411 T12: 0.0232 REMARK 3 T13: 0.0012 T23: 0.0074 REMARK 3 L TENSOR REMARK 3 L11: 0.8161 L22: 1.4860 REMARK 3 L33: 0.6873 L12: 0.0696 REMARK 3 L13: 0.0474 L23: 0.0231 REMARK 3 S TENSOR REMARK 3 S11: -0.0260 S12: -0.0451 S13: -0.1146 REMARK 3 S21: 0.0438 S22: 0.0155 S23: -0.2000 REMARK 3 S31: 0.1153 S32: 0.1257 S33: 0.0104 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 25RU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-APR-26. REMARK 100 THE DEPOSITION ID IS D_1300072938. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-DEC-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : RIGAKU HYPIX-6000HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSALISPRO REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41740 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 28.011 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4M AMMONIUM ACETATE, 0.1 M SODIUM REMARK 280 ACETATE TRIHYDRATE PH 4.6, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.08850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 37.08850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 39.42000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 76.14050 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 39.42000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 76.14050 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 37.08850 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 39.42000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 76.14050 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 37.08850 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 39.42000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 76.14050 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -90.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -78.84000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 37.08850 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 205 REMARK 465 LYS A 206 REMARK 465 SER A 207 REMARK 465 VAL A 208 REMARK 465 GLU A 209 REMARK 465 GLN A 210 REMARK 465 LEU A 211 REMARK 465 ARG A 212 REMARK 465 THR A 213 REMARK 465 GLU A 214 REMARK 465 ARG A 215 REMARK 465 GLY B 199 REMARK 465 ARG B 200 REMARK 465 ALA B 201 REMARK 465 ARG B 202 REMARK 465 ASN B 203 REMARK 465 ALA B 204 REMARK 465 GLY B 205 REMARK 465 LYS B 206 REMARK 465 SER B 207 REMARK 465 VAL B 208 REMARK 465 GLU B 209 REMARK 465 GLN B 210 REMARK 465 LEU B 211 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD22 ASN B 143 HG1 THR B 170 1.21 REMARK 500 HD22 ASN A 143 HG1 THR A 170 1.23 REMARK 500 HG1 THR B 213 H ARG B 215 1.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 216 CD - CE - NZ ANGL. DEV. = 15.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 145 -136.68 -102.88 REMARK 500 ALA A 201 43.45 -70.04 REMARK 500 ASP A 217 -12.44 69.36 REMARK 500 ASP A 253 15.51 -140.70 REMARK 500 SER B 145 -133.96 -104.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 47 0.11 SIDE CHAIN REMARK 500 ARG A 202 0.15 SIDE CHAIN REMARK 500 ARG B 9 0.17 SIDE CHAIN REMARK 500 ARG B 240 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 25RU A 4 259 UNP B7WRK6 B7WRK6_COMTK 4 259 DBREF 25RU B 4 259 UNP B7WRK6 B7WRK6_COMTK 4 259 SEQRES 1 A 256 SER ARG MET ALA GLY ARG THR ALA LEU ILE THR GLY ALA SEQRES 2 A 256 GLY ALA GLY ILE GLY ALA ALA ALA SER HIS LEU PHE CYS SEQRES 3 A 256 LYS GLU GLY ALA ALA VAL LEU MET VAL ASP ALA ASN ALA SEQRES 4 A 256 GLU ALA LEU GLU ARG THR ARG GLU ALA ILE LEU GLN ALA SEQRES 5 A 256 VAL PRO GLY ALA ARG LEU ALA CYS VAL MET ALA ASP VAL SEQRES 6 A 256 SER ASP GLU SER ALA ALA ALA ALA ALA VAL GLY GLN CYS SEQRES 7 A 256 VAL GLN GLN TRP GLY GLY LEU ASP THR LEU VAL ASN ASN SEQRES 8 A 256 ALA ALA MET ARG ASN TYR SER ALA ALA ALA ASP ALA THR SEQRES 9 A 256 ALA ALA GLU TRP GLN ALA MET VAL GLY VAL ASN LEU VAL SEQRES 10 A 256 GLY MET SER ASN TYR CYS ARG ALA ALA LEU PRO ALA LEU SEQRES 11 A 256 ARG GLN SER GLY THR GLY SER ILE VAL ASN VAL SER SER SEQRES 12 A 256 CYS TYR ALA VAL THR GLY ARG LYS GLY MET ALA LEU TYR SEQRES 13 A 256 ASP ALA THR LYS ALA ALA GLN LEU ALA TYR THR ARG SER SEQRES 14 A 256 LEU ALA PHE GLU GLU ALA ALA HIS GLY VAL ARG ALA ASN SEQRES 15 A 256 ALA VAL CYS PRO GLY SER THR LEU THR ASP PHE HIS VAL SEQRES 16 A 256 GLY ARG ALA ARG ASN ALA GLY LYS SER VAL GLU GLN LEU SEQRES 17 A 256 ARG THR GLU ARG LYS ASP THR SER LEU ILE GLY ARG TRP SEQRES 18 A 256 ALA SER PRO GLU GLU ILE ALA TRP PRO ILE PHE TRP LEU SEQRES 19 A 256 ALA SER ARG GLU ALA SER PHE ILE THR GLY THR THR LEU SEQRES 20 A 256 MET VAL ASP GLY GLY LEU HIS ILE MET SEQRES 1 B 256 SER ARG MET ALA GLY ARG THR ALA LEU ILE THR GLY ALA SEQRES 2 B 256 GLY ALA GLY ILE GLY ALA ALA ALA SER HIS LEU PHE CYS SEQRES 3 B 256 LYS GLU GLY ALA ALA VAL LEU MET VAL ASP ALA ASN ALA SEQRES 4 B 256 GLU ALA LEU GLU ARG THR ARG GLU ALA ILE LEU GLN ALA SEQRES 5 B 256 VAL PRO GLY ALA ARG LEU ALA CYS VAL MET ALA ASP VAL SEQRES 6 B 256 SER ASP GLU SER ALA ALA ALA ALA ALA VAL GLY GLN CYS SEQRES 7 B 256 VAL GLN GLN TRP GLY GLY LEU ASP THR LEU VAL ASN ASN SEQRES 8 B 256 ALA ALA MET ARG ASN TYR SER ALA ALA ALA ASP ALA THR SEQRES 9 B 256 ALA ALA GLU TRP GLN ALA MET VAL GLY VAL ASN LEU VAL SEQRES 10 B 256 GLY MET SER ASN TYR CYS ARG ALA ALA LEU PRO ALA LEU SEQRES 11 B 256 ARG GLN SER GLY THR GLY SER ILE VAL ASN VAL SER SER SEQRES 12 B 256 CYS TYR ALA VAL THR GLY ARG LYS GLY MET ALA LEU TYR SEQRES 13 B 256 ASP ALA THR LYS ALA ALA GLN LEU ALA TYR THR ARG SER SEQRES 14 B 256 LEU ALA PHE GLU GLU ALA ALA HIS GLY VAL ARG ALA ASN SEQRES 15 B 256 ALA VAL CYS PRO GLY SER THR LEU THR ASP PHE HIS VAL SEQRES 16 B 256 GLY ARG ALA ARG ASN ALA GLY LYS SER VAL GLU GLN LEU SEQRES 17 B 256 ARG THR GLU ARG LYS ASP THR SER LEU ILE GLY ARG TRP SEQRES 18 B 256 ALA SER PRO GLU GLU ILE ALA TRP PRO ILE PHE TRP LEU SEQRES 19 B 256 ALA SER ARG GLU ALA SER PHE ILE THR GLY THR THR LEU SEQRES 20 B 256 MET VAL ASP GLY GLY LEU HIS ILE MET HET NAP A 301 73 HET EDO A 302 10 HET EDO A 303 10 HET EDO A 304 10 HET GOL B 301 14 HET EDO B 302 10 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NAP C21 H28 N7 O17 P3 FORMUL 4 EDO 4(C2 H6 O2) FORMUL 7 GOL C3 H8 O3 FORMUL 9 HOH *264(H2 O) HELIX 1 AA1 ALA A 18 GLU A 31 1 14 HELIX 2 AA2 ASN A 41 VAL A 56 1 16 HELIX 3 AA3 ASP A 70 GLY A 86 1 17 HELIX 4 AA4 ALA A 102 ALA A 106 5 5 HELIX 5 AA5 THR A 107 LEU A 119 1 13 HELIX 6 AA6 LEU A 119 GLY A 137 1 19 HELIX 7 AA7 SER A 146 VAL A 150 5 5 HELIX 8 AA8 MET A 156 ALA A 178 1 23 HELIX 9 AA9 ALA A 179 GLY A 181 5 3 HELIX 10 AB1 THR A 194 ALA A 201 1 8 HELIX 11 AB2 SER A 226 SER A 239 1 14 HELIX 12 AB3 ARG A 240 SER A 243 5 4 HELIX 13 AB4 GLY A 255 MET A 259 5 5 HELIX 14 AB5 ALA B 18 GLU B 31 1 14 HELIX 15 AB6 ASN B 41 VAL B 56 1 16 HELIX 16 AB7 ASP B 70 GLY B 86 1 17 HELIX 17 AB8 ALA B 102 ALA B 106 5 5 HELIX 18 AB9 THR B 107 LEU B 119 1 13 HELIX 19 AC1 LEU B 119 GLY B 137 1 19 HELIX 20 AC2 SER B 146 VAL B 150 5 5 HELIX 21 AC3 MET B 156 ALA B 178 1 23 HELIX 22 AC4 ALA B 179 GLY B 181 5 3 HELIX 23 AC5 SER B 226 SER B 239 1 14 HELIX 24 AC6 ARG B 240 SER B 243 5 4 HELIX 25 AC7 GLY B 255 MET B 259 5 5 SHEET 1 AA1 7 LEU A 61 MET A 65 0 SHEET 2 AA1 7 ALA A 34 ASP A 39 1 N MET A 37 O ALA A 62 SHEET 3 AA1 7 THR A 10 THR A 14 1 N ALA A 11 O LEU A 36 SHEET 4 AA1 7 THR A 90 ASN A 93 1 O VAL A 92 N LEU A 12 SHEET 5 AA1 7 SER A 140 VAL A 144 1 O VAL A 144 N ASN A 93 SHEET 6 AA1 7 ARG A 183 PRO A 189 1 O ASN A 185 N ASN A 143 SHEET 7 AA1 7 THR A 249 VAL A 252 1 O LEU A 250 N CYS A 188 SHEET 1 AA2 7 ARG B 60 MET B 65 0 SHEET 2 AA2 7 ALA B 34 ASP B 39 1 N MET B 37 O ALA B 62 SHEET 3 AA2 7 THR B 10 THR B 14 1 N ALA B 11 O ALA B 34 SHEET 4 AA2 7 THR B 90 ASN B 93 1 O VAL B 92 N LEU B 12 SHEET 5 AA2 7 SER B 140 VAL B 144 1 O VAL B 142 N LEU B 91 SHEET 6 AA2 7 ARG B 183 PRO B 189 1 O ASN B 185 N ASN B 143 SHEET 7 AA2 7 THR B 249 VAL B 252 1 O LEU B 250 N CYS B 188 CRYST1 78.840 152.281 74.177 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012684 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006567 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013481 0.00000 CONECT 7099 7100 7101 7102 7121 CONECT 7100 7099 CONECT 7101 7099 CONECT 7102 7099 7103 CONECT 7103 7102 7104 7147 7148 CONECT 7104 7103 7105 7106 7149 CONECT 7105 7104 7110 CONECT 7106 7104 7107 7108 7150 CONECT 7107 7106 7151 CONECT 7108 7106 7109 7110 7152 CONECT 7109 7108 7143 CONECT 7110 7105 7108 7111 7153 CONECT 7111 7110 7112 7120 CONECT 7112 7111 7113 7154 CONECT 7113 7112 7114 CONECT 7114 7113 7115 7120 CONECT 7115 7114 7116 7117 CONECT 7116 7115 7155 7156 CONECT 7117 7115 7118 CONECT 7118 7117 7119 7157 CONECT 7119 7118 7120 CONECT 7120 7111 7114 7119 CONECT 7121 7099 7122 CONECT 7122 7121 7123 7124 7125 CONECT 7123 7122 CONECT 7124 7122 CONECT 7125 7122 7126 CONECT 7126 7125 7127 7158 7159 CONECT 7127 7126 7128 7129 7160 CONECT 7128 7127 7133 CONECT 7129 7127 7130 7131 7161 CONECT 7130 7129 7162 CONECT 7131 7129 7132 7133 7163 CONECT 7132 7131 7164 CONECT 7133 7128 7131 7134 7165 CONECT 7134 7133 7135 7142 CONECT 7135 7134 7136 7166 CONECT 7136 7135 7137 7140 CONECT 7137 7136 7138 7139 CONECT 7138 7137 CONECT 7139 7137 7167 7168 CONECT 7140 7136 7141 7169 CONECT 7141 7140 7142 7170 CONECT 7142 7134 7141 7171 CONECT 7143 7109 7144 7145 7146 CONECT 7144 7143 CONECT 7145 7143 CONECT 7146 7143 CONECT 7147 7103 CONECT 7148 7103 CONECT 7149 7104 CONECT 7150 7106 CONECT 7151 7107 CONECT 7152 7108 CONECT 7153 7110 CONECT 7154 7112 CONECT 7155 7116 CONECT 7156 7116 CONECT 7157 7118 CONECT 7158 7126 CONECT 7159 7126 CONECT 7160 7127 CONECT 7161 7129 CONECT 7162 7130 CONECT 7163 7131 CONECT 7164 7132 CONECT 7165 7133 CONECT 7166 7135 CONECT 7167 7139 CONECT 7168 7139 CONECT 7169 7140 CONECT 7170 7141 CONECT 7171 7142 CONECT 7172 7173 7174 7176 7177 CONECT 7173 7172 7178 CONECT 7174 7172 7175 7179 7180 CONECT 7175 7174 7181 CONECT 7176 7172 CONECT 7177 7172 CONECT 7178 7173 CONECT 7179 7174 CONECT 7180 7174 CONECT 7181 7175 CONECT 7182 7183 7184 7186 7187 CONECT 7183 7182 7188 CONECT 7184 7182 7185 7189 7190 CONECT 7185 7184 7191 CONECT 7186 7182 CONECT 7187 7182 CONECT 7188 7183 CONECT 7189 7184 CONECT 7190 7184 CONECT 7191 7185 CONECT 7192 7193 7194 7196 7197 CONECT 7193 7192 7198 CONECT 7194 7192 7195 7199 7200 CONECT 7195 7194 7201 CONECT 7196 7192 CONECT 7197 7192 CONECT 7198 7193 CONECT 7199 7194 CONECT 7200 7194 CONECT 7201 7195 CONECT 7202 7203 7204 7208 7209 CONECT 7203 7202 7210 CONECT 7204 7202 7205 7206 7211 CONECT 7205 7204 7212 CONECT 7206 7204 7207 7213 7214 CONECT 7207 7206 7215 CONECT 7208 7202 CONECT 7209 7202 CONECT 7210 7203 CONECT 7211 7204 CONECT 7212 7205 CONECT 7213 7206 CONECT 7214 7206 CONECT 7215 7207 CONECT 7216 7217 7218 7220 7221 CONECT 7217 7216 7222 CONECT 7218 7216 7219 7223 7224 CONECT 7219 7218 7225 CONECT 7220 7216 CONECT 7221 7216 CONECT 7222 7217 CONECT 7223 7218 CONECT 7224 7218 CONECT 7225 7219 MASTER 405 0 6 25 14 0 0 6 3876 2 127 40 END