HEADER VIRAL PROTEIN 27-APR-26 26DK TITLE CRYO-EM STRUCTURE OF BACTERIOPHAGE A1002 MATURE COLLAR COMPND MOL_ID: 1; COMPND 2 MOLECULE: STRUCTURAL PROTEIN; COMPND 3 CHAIN: M; COMPND 4 SYNONYM: COLLAR GP33 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PHAGE KPP25; SOURCE 3 ORGANISM_COMMON: BACTERIOPHAGE KPP25; SOURCE 4 ORGANISM_TAXID: 1462608 KEYWDS COLLAR, PHAGE, VIRAL PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR Y.CHEN,H.R.LIU REVDAT 1 26-AUG-26 26DK 0 JRNL AUTH Y.CHEN,H.R.LIU JRNL TITL THE IN STIU STRUCTURE OF THE COLLAR OF BACTERIOPHAGE A1002 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOSPARC, CRYOSPARC REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.500 REMARK 3 NUMBER OF PARTICLES : 32251 REMARK 3 CTF CORRECTION METHOD : NONE REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 26DK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 03-MAY-26. REMARK 100 THE DEPOSITION ID IS D_1300073629. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : PSEUDOMONAS AERUGINOSA PHAGE REMARK 245 A1002 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1800.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2200.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 3200.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: M REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET M 1 REMARK 465 THR M 2 REMARK 465 CYS M 3 REMARK 465 THR M 4 REMARK 465 ALA M 196 REMARK 465 LYS M 197 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO M 63 118.66 -23.13 REMARK 500 ASP M 128 176.17 70.47 REMARK 500 SER M 147 63.92 60.52 REMARK 500 ALA M 166 -168.81 -161.93 REMARK 500 PRO M 175 0.83 -67.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-80558 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF BACTERIOPHAGE A1002 MATURE COLLAR DBREF 26DK M 1 197 UNP X5HZT1 X5HZT1_BPKP2 1 197 SEQRES 1 M 197 MET THR CYS THR ILE ASP LEU GLN ILE LEU GLN GLY LYS SEQRES 2 M 197 THR PHE GLU PHE ALA PHE ARG TRP ALA ASP PRO ILE LYS SEQRES 3 M 197 LEU TYR LYS PRO ILE THR GLY ALA THR ALA THR ALA PRO SEQRES 4 M 197 VAL VAL LEU THR VAL PRO GLY HIS GLY LEU SER ASP GLY SEQRES 5 M 197 TRP PRO PHE GLU VAL GLN SER VAL LYS ALA PRO PRO GLU SEQRES 6 M 197 LEU ASN THR GLN PRO GLY GLN PHE HIS LEU ALA LYS VAL SEQRES 7 M 197 LEU THR PRO ASP SER LEU GLU LEU ASN ASP VAL ASN GLY SEQRES 8 M 197 ILE GLY PHE LYS ALA PHE GLY GLY ALA GLY THR ILE VAL SEQRES 9 M 197 PHE TYR THR PRO ALA ASP LEU THR GLY LEU ALA ALA ARG SEQRES 10 M 197 PHE ALA ILE ARG ARG THR PRO GLY ASP ALA ASP ALA LEU SEQRES 11 M 197 LEU THR GLY ASN THR THR ASP GLY ARG VAL VAL ILE ASP SEQRES 12 M 197 ILE PRO THR SER THR ILE SER MET LEU ILE GLY ALA ASP SEQRES 13 M 197 VAL THR ALA THR LEU ASP TRP ASN LYS ALA LEU TYR ASP SEQRES 14 M 197 LEU GLU LEU TYR ASP PRO THR ASP VAL SER VAL VAL TYR SEQRES 15 M 197 PRO VAL GLY SER GLY ARG VAL THR VAL THR ALA GLU VAL SEQRES 16 M 197 ALA LYS HELIX 1 AA1 GLY M 154 LEU M 161 1 8 SHEET 1 AA1 4 LEU M 7 LEU M 10 0 SHEET 2 AA1 4 VAL M 181 THR M 192 1 O THR M 190 N ILE M 9 SHEET 3 AA1 4 LYS M 165 TYR M 173 -1 N LEU M 172 O TYR M 182 SHEET 4 AA1 4 ALA M 115 ALA M 116 -1 N ALA M 115 O TYR M 173 SHEET 1 AA2 4 LEU M 7 LEU M 10 0 SHEET 2 AA2 4 VAL M 181 THR M 192 1 O THR M 190 N ILE M 9 SHEET 3 AA2 4 LYS M 165 TYR M 173 -1 N LEU M 172 O TYR M 182 SHEET 4 AA2 4 ALA M 119 ARG M 121 -1 N ARG M 121 O LEU M 167 SHEET 1 AA3 3 PHE M 15 ARG M 20 0 SHEET 2 AA3 3 THR M 148 ILE M 153 -1 O ILE M 149 N PHE M 19 SHEET 3 AA3 3 VAL M 140 ASP M 143 -1 N VAL M 141 O SER M 150 SHEET 1 AA4 3 ALA M 22 PRO M 30 0 SHEET 2 AA4 3 THR M 102 PRO M 108 -1 O ILE M 103 N LYS M 29 SHEET 3 AA4 3 GLU M 56 GLN M 58 -1 N GLU M 56 O VAL M 104 SHEET 1 AA5 3 VAL M 41 LEU M 42 0 SHEET 2 AA5 3 SER M 83 GLU M 85 -1 O LEU M 84 N LEU M 42 SHEET 3 AA5 3 LYS M 77 THR M 80 -1 N LYS M 77 O GLU M 85 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MASTER 132 0 0 1 17 0 0 6 1437 1 0 16 END