HEADER TRANSFERASE 28-APR-26 26EE TITLE RHODOBACTER SP. 140A POLYPHOSPHATE KINASE MUTANT-D114K/D210S COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYPHOSPHATE KINASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOBACTER SP. 140A; SOURCE 3 ORGANISM_TAXID: 2183910; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PPK, TETRAMER, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.LI,Z.LI REVDAT 1 13-MAY-26 26EE 0 JRNL AUTH Z.LI,Z.LI JRNL TITL CRYSTAL STRUCTURE OF THE D114K/D210S VARIANT OF JRNL TITL 2 POLYPHOSPHATE KINASE FROM RHODOBACTER SP. 140A. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.43 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0430 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.43 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 61.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 44217 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.824 REMARK 3 FREE R VALUE TEST SET COUNT : 2133 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.43 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3081 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.41 REMARK 3 BIN R VALUE (WORKING SET) : 0.3380 REMARK 3 BIN FREE R VALUE SET COUNT : 162 REMARK 3 BIN FREE R VALUE : 0.3490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 9326 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 107 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.18600 REMARK 3 B22 (A**2) : -0.87300 REMARK 3 B33 (A**2) : -1.41500 REMARK 3 B12 (A**2) : 0.16700 REMARK 3 B13 (A**2) : 1.51000 REMARK 3 B23 (A**2) : -0.34600 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.822 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.317 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.277 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.277 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.905 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 9530 ; 0.004 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 9332 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 12853 ; 1.054 ; 1.846 REMARK 3 BOND ANGLES OTHERS (DEGREES): 21432 ; 0.389 ; 1.801 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1142 ; 5.248 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 96 ; 4.464 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1779 ;13.578 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1390 ; 0.052 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 11344 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 2280 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1934 ; 0.205 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 93 ; 0.247 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4676 ; 0.177 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 230 ; 0.141 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4580 ; 3.276 ; 5.548 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 4579 ; 3.273 ; 5.547 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5718 ; 5.133 ; 9.972 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 5719 ; 5.133 ; 9.973 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4950 ; 3.765 ; 6.070 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 4934 ; 3.754 ; 6.070 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 7135 ; 6.271 ;10.944 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 7112 ; 6.265 ;10.944 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 6 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 25 A 309 NULL REMARK 3 1 B 25 B 309 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 2 A 26 A 309 NULL REMARK 3 2 C 26 C 309 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 NCS GROUP NUMBER : 3 REMARK 3 CHAIN NAMES : A D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 3 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 3 A 25 A 309 NULL REMARK 3 3 D 25 D 309 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 NCS GROUP NUMBER : 4 REMARK 3 CHAIN NAMES : B C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 4 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 4 B 26 B 309 NULL REMARK 3 4 C 26 C 309 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 NCS GROUP NUMBER : 5 REMARK 3 CHAIN NAMES : B D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 5 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 5 B 25 B 309 NULL REMARK 3 5 D 25 D 309 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 NCS GROUP NUMBER : 6 REMARK 3 CHAIN NAMES : C D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 6 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 6 C 26 C 309 NULL REMARK 3 6 D 26 D 309 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 26EE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 03-MAY-26. REMARK 100 THE DEPOSITION ID IS D_1300072656. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-MAR-26 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.7 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44219 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.430 REMARK 200 RESOLUTION RANGE LOW (A) : 61.459 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.43 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.79000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MGCL2, 0.1 M TRIS-HCL PH 8.5, REMARK 280 25% (W/V) PEG 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 50520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 LYS A 3 REMARK 465 ASP A 4 REMARK 465 LYS A 5 REMARK 465 LYS A 6 REMARK 465 PRO A 7 REMARK 465 ASP A 8 REMARK 465 ASP A 9 REMARK 465 LYS A 10 REMARK 465 VAL A 11 REMARK 465 ALA A 12 REMARK 465 LEU A 13 REMARK 465 PRO A 14 REMARK 465 LYS A 15 REMARK 465 ALA A 16 REMARK 465 VAL A 17 REMARK 465 ALA A 18 REMARK 465 ALA A 19 REMARK 465 ALA A 20 REMARK 465 ALA A 21 REMARK 465 LYS A 22 REMARK 465 GLY A 23 REMARK 465 GLU A 24 REMARK 465 ASN A 311 REMARK 465 GLY A 312 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 LYS B 3 REMARK 465 ASP B 4 REMARK 465 LYS B 5 REMARK 465 LYS B 6 REMARK 465 PRO B 7 REMARK 465 ASP B 8 REMARK 465 ASP B 9 REMARK 465 LYS B 10 REMARK 465 VAL B 11 REMARK 465 ALA B 12 REMARK 465 LEU B 13 REMARK 465 PRO B 14 REMARK 465 LYS B 15 REMARK 465 ALA B 16 REMARK 465 VAL B 17 REMARK 465 ALA B 18 REMARK 465 ALA B 19 REMARK 465 ALA B 20 REMARK 465 ALA B 21 REMARK 465 LYS B 22 REMARK 465 GLY B 23 REMARK 465 ASN B 311 REMARK 465 GLY B 312 REMARK 465 MET C 1 REMARK 465 GLY C 2 REMARK 465 LYS C 3 REMARK 465 ASP C 4 REMARK 465 LYS C 5 REMARK 465 LYS C 6 REMARK 465 PRO C 7 REMARK 465 ASP C 8 REMARK 465 ASP C 9 REMARK 465 LYS C 10 REMARK 465 VAL C 11 REMARK 465 ALA C 12 REMARK 465 LEU C 13 REMARK 465 PRO C 14 REMARK 465 LYS C 15 REMARK 465 ALA C 16 REMARK 465 VAL C 17 REMARK 465 ALA C 18 REMARK 465 ALA C 19 REMARK 465 ALA C 20 REMARK 465 ALA C 21 REMARK 465 LYS C 22 REMARK 465 GLY C 23 REMARK 465 GLU C 24 REMARK 465 GLY C 25 REMARK 465 ASN C 311 REMARK 465 GLY C 312 REMARK 465 MET D 1 REMARK 465 GLY D 2 REMARK 465 LYS D 3 REMARK 465 ASP D 4 REMARK 465 LYS D 5 REMARK 465 LYS D 6 REMARK 465 PRO D 7 REMARK 465 ASP D 8 REMARK 465 ASP D 9 REMARK 465 LYS D 10 REMARK 465 VAL D 11 REMARK 465 ALA D 12 REMARK 465 LEU D 13 REMARK 465 PRO D 14 REMARK 465 LYS D 15 REMARK 465 ALA D 16 REMARK 465 VAL D 17 REMARK 465 ALA D 18 REMARK 465 ALA D 19 REMARK 465 ALA D 20 REMARK 465 ALA D 21 REMARK 465 LYS D 22 REMARK 465 GLY D 23 REMARK 465 GLU D 24 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG C 267 O HOH C 501 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 28 -0.31 77.97 REMARK 500 PRO A 131 -168.42 -69.50 REMARK 500 ARG A 161 113.57 76.94 REMARK 500 SER A 162 -159.76 -122.15 REMARK 500 VAL A 168 -77.96 -118.39 REMARK 500 PHE B 28 -6.91 81.53 REMARK 500 THR B 50 56.05 -110.60 REMARK 500 PRO B 131 -169.60 -68.60 REMARK 500 ARG B 161 116.60 73.45 REMARK 500 SER B 162 -159.95 -119.95 REMARK 500 VAL B 168 -78.16 -118.30 REMARK 500 PHE C 28 -1.22 79.43 REMARK 500 PRO C 131 -168.15 -70.17 REMARK 500 ARG C 161 114.18 76.91 REMARK 500 SER C 162 -159.84 -123.12 REMARK 500 VAL C 168 -78.52 -118.05 REMARK 500 LEU D 57 63.32 -100.01 REMARK 500 PRO D 131 -166.26 -71.66 REMARK 500 ARG D 161 114.90 78.33 REMARK 500 SER D 162 -160.12 -123.69 REMARK 500 VAL D 168 -79.33 -117.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 302 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 537 DISTANCE = 6.00 ANGSTROMS DBREF 26EE A 1 312 PDB 26EE 26EE 1 312 DBREF 26EE B 1 312 PDB 26EE 26EE 1 312 DBREF 26EE C 1 312 PDB 26EE 26EE 1 312 DBREF 26EE D 1 312 PDB 26EE 26EE 1 312 SEQRES 1 A 312 MET GLY LYS ASP LYS LYS PRO ASP ASP LYS VAL ALA LEU SEQRES 2 A 312 PRO LYS ALA VAL ALA ALA ALA ALA LYS GLY GLU GLY ILE SEQRES 3 A 312 PRO PHE VAL GLY ASP ILE THR LYS TYR LEU LYS THR GLU SEQRES 4 A 312 ALA PRO GLU ALA VAL ARG LYS ALA ILE GLU THR ALA ASP SEQRES 5 A 312 LYS ASP GLU ILE LEU SER LYS SER TYR PRO TYR ARG GLU SEQRES 6 A 312 GLU MET LYS LYS LYS ASP TYR GLU ALA GLN MET ALA ALA SEQRES 7 A 312 LEU GLN ILE GLU LEU VAL LYS MET LEU TRP ASP LEU LYS SEQRES 8 A 312 ALA THR GLY ARG ARG LEU VAL VAL LEU PHE GLU GLY ARG SEQRES 9 A 312 ASP ALA ALA GLY LYS GLY GLY THR ILE LYS ARG LEU ARG SEQRES 10 A 312 GLU ASN LEU ASN PRO ARG SER ALA TYR VAL VAL ALA LEU SEQRES 11 A 312 PRO LYS ALA ASN GLU ARG GLU ALA THR GLN TRP TYR PHE SEQRES 12 A 312 GLN ARG TYR VAL ASP TRP LEU PRO ALA ALA GLY GLU ILE SEQRES 13 A 312 ALA ILE PHE ASP ARG SER TRP TYR ASN ARG GLY VAL VAL SEQRES 14 A 312 GLU LYS VAL PHE GLY PHE CYS THR ASP ALA GLN ARG GLU SEQRES 15 A 312 ARG PHE PHE ALA GLN LEU PRO ASP PHE GLU LYS MET LEU SEQRES 16 A 312 VAL ASP GLU GLU VAL ILE LEU VAL LYS ILE TRP LEU SER SEQRES 17 A 312 VAL SER ARG ALA GLU GLN LEU LYS ARG PHE LEU ASP ARG SEQRES 18 A 312 GLU LYS ASP PRO LEU LYS GLN TRP LYS LEU SER TRP VAL SEQRES 19 A 312 ASP VAL GLU GLY LEU LYS LYS TRP ASP ASP TYR THR ALA SEQRES 20 A 312 ALA ILE LYS GLU THR LEU GLU ARG SER HIS THR VAL SER SEQRES 21 A 312 ALA PRO TRP THR VAL ILE ARG SER ASP ASP LYS MET ARG SEQRES 22 A 312 ALA ARG ILE ALA ALA VAL GLN THR VAL LEU GLY ALA VAL SEQRES 23 A 312 GLU PHE ALA ARG LYS ASP ARG LYS ALA ILE GLY GLU ILE SEQRES 24 A 312 ASP GLY ARG ILE CYS GLY GLY LEU ASP ILE LEU ASN GLY SEQRES 1 B 312 MET GLY LYS ASP LYS LYS PRO ASP ASP LYS VAL ALA LEU SEQRES 2 B 312 PRO LYS ALA VAL ALA ALA ALA ALA LYS GLY GLU GLY ILE SEQRES 3 B 312 PRO PHE VAL GLY ASP ILE THR LYS TYR LEU LYS THR GLU SEQRES 4 B 312 ALA PRO GLU ALA VAL ARG LYS ALA ILE GLU THR ALA ASP SEQRES 5 B 312 LYS ASP GLU ILE LEU SER LYS SER TYR PRO TYR ARG GLU SEQRES 6 B 312 GLU MET LYS LYS LYS ASP TYR GLU ALA GLN MET ALA ALA SEQRES 7 B 312 LEU GLN ILE GLU LEU VAL LYS MET LEU TRP ASP LEU LYS SEQRES 8 B 312 ALA THR GLY ARG ARG LEU VAL VAL LEU PHE GLU GLY ARG SEQRES 9 B 312 ASP ALA ALA GLY LYS GLY GLY THR ILE LYS ARG LEU ARG SEQRES 10 B 312 GLU ASN LEU ASN PRO ARG SER ALA TYR VAL VAL ALA LEU SEQRES 11 B 312 PRO LYS ALA ASN GLU ARG GLU ALA THR GLN TRP TYR PHE SEQRES 12 B 312 GLN ARG TYR VAL ASP TRP LEU PRO ALA ALA GLY GLU ILE SEQRES 13 B 312 ALA ILE PHE ASP ARG SER TRP TYR ASN ARG GLY VAL VAL SEQRES 14 B 312 GLU LYS VAL PHE GLY PHE CYS THR ASP ALA GLN ARG GLU SEQRES 15 B 312 ARG PHE PHE ALA GLN LEU PRO ASP PHE GLU LYS MET LEU SEQRES 16 B 312 VAL ASP GLU GLU VAL ILE LEU VAL LYS ILE TRP LEU SER SEQRES 17 B 312 VAL SER ARG ALA GLU GLN LEU LYS ARG PHE LEU ASP ARG SEQRES 18 B 312 GLU LYS ASP PRO LEU LYS GLN TRP LYS LEU SER TRP VAL SEQRES 19 B 312 ASP VAL GLU GLY LEU LYS LYS TRP ASP ASP TYR THR ALA SEQRES 20 B 312 ALA ILE LYS GLU THR LEU GLU ARG SER HIS THR VAL SER SEQRES 21 B 312 ALA PRO TRP THR VAL ILE ARG SER ASP ASP LYS MET ARG SEQRES 22 B 312 ALA ARG ILE ALA ALA VAL GLN THR VAL LEU GLY ALA VAL SEQRES 23 B 312 GLU PHE ALA ARG LYS ASP ARG LYS ALA ILE GLY GLU ILE SEQRES 24 B 312 ASP GLY ARG ILE CYS GLY GLY LEU ASP ILE LEU ASN GLY SEQRES 1 C 312 MET GLY LYS ASP LYS LYS PRO ASP ASP LYS VAL ALA LEU SEQRES 2 C 312 PRO LYS ALA VAL ALA ALA ALA ALA LYS GLY GLU GLY ILE SEQRES 3 C 312 PRO PHE VAL GLY ASP ILE THR LYS TYR LEU LYS THR GLU SEQRES 4 C 312 ALA PRO GLU ALA VAL ARG LYS ALA ILE GLU THR ALA ASP SEQRES 5 C 312 LYS ASP GLU ILE LEU SER LYS SER TYR PRO TYR ARG GLU SEQRES 6 C 312 GLU MET LYS LYS LYS ASP TYR GLU ALA GLN MET ALA ALA SEQRES 7 C 312 LEU GLN ILE GLU LEU VAL LYS MET LEU TRP ASP LEU LYS SEQRES 8 C 312 ALA THR GLY ARG ARG LEU VAL VAL LEU PHE GLU GLY ARG SEQRES 9 C 312 ASP ALA ALA GLY LYS GLY GLY THR ILE LYS ARG LEU ARG SEQRES 10 C 312 GLU ASN LEU ASN PRO ARG SER ALA TYR VAL VAL ALA LEU SEQRES 11 C 312 PRO LYS ALA ASN GLU ARG GLU ALA THR GLN TRP TYR PHE SEQRES 12 C 312 GLN ARG TYR VAL ASP TRP LEU PRO ALA ALA GLY GLU ILE SEQRES 13 C 312 ALA ILE PHE ASP ARG SER TRP TYR ASN ARG GLY VAL VAL SEQRES 14 C 312 GLU LYS VAL PHE GLY PHE CYS THR ASP ALA GLN ARG GLU SEQRES 15 C 312 ARG PHE PHE ALA GLN LEU PRO ASP PHE GLU LYS MET LEU SEQRES 16 C 312 VAL ASP GLU GLU VAL ILE LEU VAL LYS ILE TRP LEU SER SEQRES 17 C 312 VAL SER ARG ALA GLU GLN LEU LYS ARG PHE LEU ASP ARG SEQRES 18 C 312 GLU LYS ASP PRO LEU LYS GLN TRP LYS LEU SER TRP VAL SEQRES 19 C 312 ASP VAL GLU GLY LEU LYS LYS TRP ASP ASP TYR THR ALA SEQRES 20 C 312 ALA ILE LYS GLU THR LEU GLU ARG SER HIS THR VAL SER SEQRES 21 C 312 ALA PRO TRP THR VAL ILE ARG SER ASP ASP LYS MET ARG SEQRES 22 C 312 ALA ARG ILE ALA ALA VAL GLN THR VAL LEU GLY ALA VAL SEQRES 23 C 312 GLU PHE ALA ARG LYS ASP ARG LYS ALA ILE GLY GLU ILE SEQRES 24 C 312 ASP GLY ARG ILE CYS GLY GLY LEU ASP ILE LEU ASN GLY SEQRES 1 D 312 MET GLY LYS ASP LYS LYS PRO ASP ASP LYS VAL ALA LEU SEQRES 2 D 312 PRO LYS ALA VAL ALA ALA ALA ALA LYS GLY GLU GLY ILE SEQRES 3 D 312 PRO PHE VAL GLY ASP ILE THR LYS TYR LEU LYS THR GLU SEQRES 4 D 312 ALA PRO GLU ALA VAL ARG LYS ALA ILE GLU THR ALA ASP SEQRES 5 D 312 LYS ASP GLU ILE LEU SER LYS SER TYR PRO TYR ARG GLU SEQRES 6 D 312 GLU MET LYS LYS LYS ASP TYR GLU ALA GLN MET ALA ALA SEQRES 7 D 312 LEU GLN ILE GLU LEU VAL LYS MET LEU TRP ASP LEU LYS SEQRES 8 D 312 ALA THR GLY ARG ARG LEU VAL VAL LEU PHE GLU GLY ARG SEQRES 9 D 312 ASP ALA ALA GLY LYS GLY GLY THR ILE LYS ARG LEU ARG SEQRES 10 D 312 GLU ASN LEU ASN PRO ARG SER ALA TYR VAL VAL ALA LEU SEQRES 11 D 312 PRO LYS ALA ASN GLU ARG GLU ALA THR GLN TRP TYR PHE SEQRES 12 D 312 GLN ARG TYR VAL ASP TRP LEU PRO ALA ALA GLY GLU ILE SEQRES 13 D 312 ALA ILE PHE ASP ARG SER TRP TYR ASN ARG GLY VAL VAL SEQRES 14 D 312 GLU LYS VAL PHE GLY PHE CYS THR ASP ALA GLN ARG GLU SEQRES 15 D 312 ARG PHE PHE ALA GLN LEU PRO ASP PHE GLU LYS MET LEU SEQRES 16 D 312 VAL ASP GLU GLU VAL ILE LEU VAL LYS ILE TRP LEU SER SEQRES 17 D 312 VAL SER ARG ALA GLU GLN LEU LYS ARG PHE LEU ASP ARG SEQRES 18 D 312 GLU LYS ASP PRO LEU LYS GLN TRP LYS LEU SER TRP VAL SEQRES 19 D 312 ASP VAL GLU GLY LEU LYS LYS TRP ASP ASP TYR THR ALA SEQRES 20 D 312 ALA ILE LYS GLU THR LEU GLU ARG SER HIS THR VAL SER SEQRES 21 D 312 ALA PRO TRP THR VAL ILE ARG SER ASP ASP LYS MET ARG SEQRES 22 D 312 ALA ARG ILE ALA ALA VAL GLN THR VAL LEU GLY ALA VAL SEQRES 23 D 312 GLU PHE ALA ARG LYS ASP ARG LYS ALA ILE GLY GLU ILE SEQRES 24 D 312 ASP GLY ARG ILE CYS GLY GLY LEU ASP ILE LEU ASN GLY HET PO4 A 401 5 HET PO4 B 401 5 HET PO4 C 401 5 HET PO4 D 401 5 HETNAM PO4 PHOSPHATE ION FORMUL 5 PO4 4(O4 P 3-) FORMUL 9 HOH *107(H2 O) HELIX 1 AA1 GLY A 30 GLU A 39 1 10 HELIX 2 AA2 PRO A 41 THR A 50 1 10 HELIX 3 AA3 LYS A 68 GLY A 94 1 27 HELIX 4 AA4 GLY A 108 GLU A 118 1 11 HELIX 5 AA5 ARG A 136 GLN A 140 5 5 HELIX 6 AA6 PHE A 143 ASP A 148 1 6 HELIX 7 AA7 SER A 162 ARG A 166 5 5 HELIX 8 AA8 VAL A 168 GLY A 174 1 7 HELIX 9 AA9 THR A 177 GLU A 198 1 22 HELIX 10 AB1 SER A 210 ASP A 224 1 15 HELIX 11 AB2 LYS A 227 LEU A 231 5 5 HELIX 12 AB3 SER A 232 LEU A 239 1 8 HELIX 13 AB4 LYS A 241 HIS A 257 1 17 HELIX 14 AB5 ASP A 270 ALA A 285 1 16 HELIX 15 AB6 ASP A 292 GLY A 297 1 6 HELIX 16 AB7 GLY A 306 LEU A 310 5 5 HELIX 17 AB8 GLY B 30 GLU B 39 1 10 HELIX 18 AB9 PRO B 41 THR B 50 1 10 HELIX 19 AC1 LYS B 68 GLY B 94 1 27 HELIX 20 AC2 GLY B 108 GLU B 118 1 11 HELIX 21 AC3 ARG B 136 GLN B 140 5 5 HELIX 22 AC4 PHE B 143 ASP B 148 1 6 HELIX 23 AC5 SER B 162 ARG B 166 5 5 HELIX 24 AC6 VAL B 168 GLY B 174 1 7 HELIX 25 AC7 THR B 177 GLU B 198 1 22 HELIX 26 AC8 SER B 210 ASP B 224 1 15 HELIX 27 AC9 LYS B 227 LEU B 231 5 5 HELIX 28 AD1 SER B 232 LEU B 239 1 8 HELIX 29 AD2 LYS B 241 HIS B 257 1 17 HELIX 30 AD3 ASP B 270 ALA B 285 1 16 HELIX 31 AD4 ASP B 292 GLY B 297 1 6 HELIX 32 AD5 GLY B 306 LEU B 310 5 5 HELIX 33 AD6 GLY C 30 GLU C 39 1 10 HELIX 34 AD7 PRO C 41 THR C 50 1 10 HELIX 35 AD8 LYS C 68 GLY C 94 1 27 HELIX 36 AD9 GLY C 108 GLU C 118 1 11 HELIX 37 AE1 ARG C 136 GLN C 140 5 5 HELIX 38 AE2 PHE C 143 ASP C 148 1 6 HELIX 39 AE3 SER C 162 ARG C 166 5 5 HELIX 40 AE4 VAL C 168 GLY C 174 1 7 HELIX 41 AE5 THR C 177 GLU C 198 1 22 HELIX 42 AE6 SER C 210 ASP C 224 1 15 HELIX 43 AE7 LYS C 227 LEU C 231 5 5 HELIX 44 AE8 SER C 232 LEU C 239 1 8 HELIX 45 AE9 LYS C 241 HIS C 257 1 17 HELIX 46 AF1 ASP C 270 ALA C 285 1 16 HELIX 47 AF2 ASP C 292 GLY C 297 1 6 HELIX 48 AF3 GLY C 306 LEU C 310 5 5 HELIX 49 AF4 GLY D 30 GLU D 39 1 10 HELIX 50 AF5 PRO D 41 THR D 50 1 10 HELIX 51 AF6 LYS D 68 GLY D 94 1 27 HELIX 52 AF7 GLY D 108 GLU D 118 1 11 HELIX 53 AF8 ARG D 136 GLN D 140 5 5 HELIX 54 AF9 PHE D 143 ASP D 148 1 6 HELIX 55 AG1 SER D 162 ARG D 166 5 5 HELIX 56 AG2 VAL D 168 GLY D 174 1 7 HELIX 57 AG3 THR D 177 GLU D 198 1 22 HELIX 58 AG4 SER D 210 ASP D 224 1 15 HELIX 59 AG5 LYS D 227 LEU D 231 5 5 HELIX 60 AG6 SER D 232 LEU D 239 1 8 HELIX 61 AG7 LYS D 241 HIS D 257 1 17 HELIX 62 AG8 ASP D 270 ALA D 285 1 16 HELIX 63 AG9 ASP D 292 GLY D 297 1 6 HELIX 64 AH1 LEU D 307 GLY D 312 1 6 SHEET 1 AA1 6 ALA A 125 VAL A 128 0 SHEET 2 AA1 6 ILE A 156 ASP A 160 1 O ILE A 158 N VAL A 128 SHEET 3 AA1 6 ARG A 96 GLY A 103 1 N LEU A 97 O ALA A 157 SHEET 4 AA1 6 VAL A 200 SER A 208 1 O ILE A 201 N VAL A 98 SHEET 5 AA1 6 TRP A 263 ARG A 267 1 O ILE A 266 N TRP A 206 SHEET 6 AA1 6 CYS A 304 GLY A 305 -1 O GLY A 305 N VAL A 265 SHEET 1 AA2 6 ALA B 125 VAL B 128 0 SHEET 2 AA2 6 ILE B 156 ASP B 160 1 O ILE B 158 N VAL B 128 SHEET 3 AA2 6 ARG B 96 GLY B 103 1 N LEU B 97 O ALA B 157 SHEET 4 AA2 6 VAL B 200 SER B 208 1 O ILE B 201 N VAL B 98 SHEET 5 AA2 6 TRP B 263 ARG B 267 1 O ILE B 266 N TRP B 206 SHEET 6 AA2 6 CYS B 304 GLY B 305 -1 O GLY B 305 N VAL B 265 SHEET 1 AA3 6 ALA C 125 VAL C 128 0 SHEET 2 AA3 6 ILE C 156 ASP C 160 1 O ILE C 158 N VAL C 128 SHEET 3 AA3 6 ARG C 96 GLY C 103 1 N LEU C 97 O ALA C 157 SHEET 4 AA3 6 VAL C 200 SER C 208 1 O ILE C 201 N VAL C 98 SHEET 5 AA3 6 TRP C 263 ARG C 267 1 O ILE C 266 N TRP C 206 SHEET 6 AA3 6 CYS C 304 GLY C 305 -1 O GLY C 305 N VAL C 265 SHEET 1 AA4 6 ALA D 125 VAL D 128 0 SHEET 2 AA4 6 ILE D 156 ASP D 160 1 O ILE D 158 N VAL D 128 SHEET 3 AA4 6 ARG D 96 GLY D 103 1 N LEU D 97 O ALA D 157 SHEET 4 AA4 6 VAL D 200 SER D 208 1 O ILE D 201 N VAL D 98 SHEET 5 AA4 6 TRP D 263 ARG D 267 1 O THR D 264 N TRP D 206 SHEET 6 AA4 6 CYS D 304 GLY D 305 -1 O GLY D 305 N VAL D 265 CRYST1 58.300 65.450 90.360 104.50 101.04 100.82 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017153 0.003279 0.004526 0.00000 SCALE2 0.000000 0.015556 0.004840 0.00000 SCALE3 0.000000 0.000000 0.011809 0.00000 CONECT 9331 9332 9333 9334 9335 CONECT 9332 9331 CONECT 9333 9331 CONECT 9334 9331 CONECT 9335 9331 CONECT 9336 9337 9338 9339 9340 CONECT 9337 9336 CONECT 9338 9336 CONECT 9339 9336 CONECT 9340 9336 CONECT 9341 9342 9343 9344 9345 CONECT 9342 9341 CONECT 9343 9341 CONECT 9344 9341 CONECT 9345 9341 CONECT 9346 9347 9348 9349 9350 CONECT 9347 9346 CONECT 9348 9346 CONECT 9349 9346 CONECT 9350 9346 MASTER 462 0 4 64 24 0 0 6 9453 4 20 96 END