HEADER OXIDOREDUCTASE 01-MAY-26 26JC TITLE CRYSTAL STRUCTURE OF D-APIONATE OXIDOISOMERASE FROM AUREIMONAS TITLE 2 ALTAMIRENSIS IN COMPLEX WITH NAD+(H) AND ZN2+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: NADP OXIDOREDUCTASE COENZYME F420-DEPENDENT; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: D-APIONATE OXIDOISOMERASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AUREIMONAS ALTAMIRENSIS; SOURCE 3 ORGANISM_TAXID: 370622; SOURCE 4 GENE: SAMN02745911_3050; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI DH5[ALPHA]; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 668369 KEYWDS D-APIOSE METABOLISM; D-APIONATE; OXIDOISOMERASE; METAL ENZYME, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.WATANABE,Y.AONO REVDAT 1 11-NOV-26 26JC 0 JRNL AUTH S.WATANABE,Y.AONO,S.I.TERAWAKI,H.SATO,T.YOKOI JRNL TITL STRUCTURAL BASIS FOR OXIDATION-COUPLED ISOMERIZATION BY JRNL TITL 2 APNO. JRNL REF J.BIOL.CHEM. 13628 2026 JRNL REFN ESSN 1083-351X JRNL PMID 42849729 JRNL DOI 10.1016/J.JBC.2026.113628 REMARK 2 REMARK 2 RESOLUTION. 1.61 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.61 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.43 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 73472 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.180 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.910 REMARK 3 FREE R VALUE TEST SET COUNT : 3610 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.4300 - 4.7700 1.00 2894 141 0.1775 0.1697 REMARK 3 2 4.7700 - 3.7900 1.00 2758 157 0.1376 0.1417 REMARK 3 3 3.7900 - 3.3100 1.00 2734 156 0.1508 0.1711 REMARK 3 4 3.3100 - 3.0000 1.00 2710 137 0.1670 0.1778 REMARK 3 5 3.0000 - 2.7900 1.00 2719 135 0.1778 0.2123 REMARK 3 6 2.7900 - 2.6200 1.00 2685 135 0.1656 0.2230 REMARK 3 7 2.6200 - 2.4900 1.00 2702 137 0.1667 0.1994 REMARK 3 8 2.4900 - 2.3800 1.00 2669 152 0.1606 0.1816 REMARK 3 9 2.3800 - 2.2900 1.00 2649 155 0.1620 0.1949 REMARK 3 10 2.2900 - 2.2100 1.00 2680 146 0.1546 0.1784 REMARK 3 11 2.2100 - 2.1400 0.99 2675 144 0.1521 0.1739 REMARK 3 12 2.1400 - 2.0800 1.00 2657 148 0.1486 0.1672 REMARK 3 13 2.0800 - 2.0300 1.00 2674 138 0.1505 0.1853 REMARK 3 14 2.0300 - 1.9800 1.00 2673 129 0.1441 0.1539 REMARK 3 15 1.9800 - 1.9300 1.00 2696 117 0.1460 0.1933 REMARK 3 16 1.9300 - 1.8900 1.00 2670 125 0.1432 0.2010 REMARK 3 17 1.8900 - 1.8500 1.00 2693 118 0.1455 0.1592 REMARK 3 18 1.8500 - 1.8200 1.00 2646 141 0.1422 0.1813 REMARK 3 19 1.8200 - 1.7900 1.00 2674 146 0.1518 0.1720 REMARK 3 20 1.7900 - 1.7600 1.00 2650 135 0.1595 0.2153 REMARK 3 21 1.7600 - 1.7300 1.00 2657 144 0.1530 0.1820 REMARK 3 22 1.7300 - 1.7000 1.00 2676 120 0.1464 0.1894 REMARK 3 23 1.7000 - 1.6800 1.00 2657 142 0.1461 0.1714 REMARK 3 24 1.6800 - 1.6500 1.00 2622 138 0.1536 0.2373 REMARK 3 25 1.6500 - 1.6300 1.00 2685 129 0.1545 0.1773 REMARK 3 26 1.6300 - 1.6100 1.00 2657 145 0.1542 0.1812 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.430 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 4354 REMARK 3 ANGLE : 1.404 5925 REMARK 3 CHIRALITY : 0.092 670 REMARK 3 PLANARITY : 0.012 765 REMARK 3 DIHEDRAL : 12.688 1591 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 2 THROUGH 275) REMARK 3 ORIGIN FOR THE GROUP (A): 29.9163 -2.7428 -15.7757 REMARK 3 T TENSOR REMARK 3 T11: 0.0280 T22: 0.0316 REMARK 3 T33: 0.0470 T12: 0.0046 REMARK 3 T13: 0.0014 T23: 0.0046 REMARK 3 L TENSOR REMARK 3 L11: 0.2465 L22: 0.2644 REMARK 3 L33: 0.7688 L12: 0.0579 REMARK 3 L13: 0.1591 L23: 0.0808 REMARK 3 S TENSOR REMARK 3 S11: 0.0077 S12: 0.0061 S13: -0.0187 REMARK 3 S21: -0.0195 S22: 0.0115 S23: 0.0093 REMARK 3 S31: -0.0060 S32: -0.0442 S33: -0.0178 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 2 THROUGH 275) REMARK 3 ORIGIN FOR THE GROUP (A): 40.9108 -0.3662 15.7726 REMARK 3 T TENSOR REMARK 3 T11: 0.0296 T22: 0.0374 REMARK 3 T33: 0.0455 T12: 0.0007 REMARK 3 T13: 0.0008 T23: -0.0056 REMARK 3 L TENSOR REMARK 3 L11: 0.3331 L22: 0.2467 REMARK 3 L33: 0.8674 L12: -0.1220 REMARK 3 L13: 0.2445 L23: -0.1447 REMARK 3 S TENSOR REMARK 3 S11: -0.0047 S12: -0.0398 S13: 0.0104 REMARK 3 S21: 0.0186 S22: 0.0023 S23: -0.0137 REMARK 3 S31: -0.0275 S32: 0.0186 S33: 0.0011 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 26JC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-MAY-26. REMARK 100 THE DEPOSITION ID IS D_1300072640. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUL-25 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL45XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.28 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 73588 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.610 REMARK 200 RESOLUTION RANGE LOW (A) : 46.430 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 23.60 REMARK 200 R MERGE (I) : 0.73100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.61 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 23.60 REMARK 200 R MERGE FOR SHELL (I) : 2.63400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: ALPHAFOLD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM ACETATE 0.1 M BIS-TRIS REMARK 280 PH 6.5 25% W/V POLYETHLENE GLYCOL 3,350, EVAPORATION, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.59400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.19900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.81900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.19900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.59400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.81900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -184.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -10 REMARK 465 ARG A -9 REMARK 465 GLY A -8 REMARK 465 SER A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 GLY A 0 REMARK 465 SER A 1 REMARK 465 MET B -10 REMARK 465 ARG B -9 REMARK 465 GLY B -8 REMARK 465 SER B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 GLY B 0 REMARK 465 SER B 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 53 CG CD OE1 OE2 REMARK 470 LYS B 83 CG CD CE NZ REMARK 470 GLU B 177 CG CD OE1 OE2 REMARK 470 ARG B 272 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 655 O HOH B 686 1.77 REMARK 500 O HOH A 537 O HOH A 621 1.85 REMARK 500 O HOH B 578 O HOH B 596 1.91 REMARK 500 O HOH A 806 O HOH B 708 1.97 REMARK 500 O HOH A 581 O HOH A 790 2.04 REMARK 500 OE2 GLU A 35 O HOH A 401 2.04 REMARK 500 O HOH A 617 O HOH B 421 2.04 REMARK 500 O HOH A 738 O HOH B 643 2.05 REMARK 500 O HOH B 457 O HOH B 749 2.05 REMARK 500 O HOH B 422 O HOH B 644 2.05 REMARK 500 O HOH A 653 O HOH A 804 2.06 REMARK 500 O HOH A 480 O HOH B 414 2.06 REMARK 500 O HOH A 464 O HOH A 741 2.06 REMARK 500 O HOH A 435 O HOH A 709 2.07 REMARK 500 O HOH B 721 O HOH B 739 2.07 REMARK 500 O HOH B 404 O HOH B 589 2.11 REMARK 500 O HOH A 519 O HOH B 667 2.11 REMARK 500 O HOH A 476 O HOH A 770 2.12 REMARK 500 O HOH A 779 O HOH A 783 2.12 REMARK 500 O HOH A 489 O HOH A 799 2.12 REMARK 500 OD2 ASP A 92 O HOH A 402 2.13 REMARK 500 OD2 ASP B 92 O HOH B 401 2.13 REMARK 500 O HOH B 406 O HOH B 694 2.13 REMARK 500 OD2 ASP B 256 O HOH B 402 2.14 REMARK 500 O HOH A 471 O HOH A 675 2.14 REMARK 500 OE1 GLU B 152 O HOH B 403 2.15 REMARK 500 O HOH A 613 O HOH A 748 2.16 REMARK 500 O HOH A 685 O HOH A 825 2.18 REMARK 500 O HOH B 796 O HOH B 797 2.18 REMARK 500 O HOH A 607 O HOH A 733 2.18 REMARK 500 O HOH A 664 O HOH A 721 2.19 REMARK 500 O HOH B 704 O HOH B 790 2.19 REMARK 500 O HOH A 477 O HOH A 774 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 651 O HOH B 655 3655 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 116 153.95 68.69 REMARK 500 ILE A 136 -57.80 -120.03 REMARK 500 ALA A 137 -29.68 -148.32 REMARK 500 MET A 169 -105.20 -102.33 REMARK 500 MET A 169 -103.89 -103.48 REMARK 500 VAL A 190 -67.14 -94.15 REMARK 500 HIS B 116 155.52 66.89 REMARK 500 ALA B 137 -29.63 -147.89 REMARK 500 MET B 169 -103.22 -100.88 REMARK 500 VAL B 190 -67.45 -95.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 840 DISTANCE = 6.06 ANGSTROMS REMARK 525 HOH A 841 DISTANCE = 6.41 ANGSTROMS REMARK 525 HOH A 842 DISTANCE = 6.49 ANGSTROMS REMARK 525 HOH B 807 DISTANCE = 6.43 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 113 NE2 REMARK 620 2 GLU A 183 OE1 113.5 REMARK 620 3 HIS B 222 NE2 115.3 92.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 222 NE2 REMARK 620 2 HIS B 113 NE2 112.1 REMARK 620 3 GLU B 183 OE1 96.8 116.2 REMARK 620 N 1 2 DBREF1 26JC A 2 275 UNP A0ABY1INU2_9HYPH DBREF2 26JC A A0ABY1INU2 2 275 DBREF1 26JC B 2 275 UNP A0ABY1INU2_9HYPH DBREF2 26JC B A0ABY1INU2 2 275 SEQADV 26JC MET A -10 UNP A0ABY1INU INITIATING METHIONINE SEQADV 26JC ARG A -9 UNP A0ABY1INU EXPRESSION TAG SEQADV 26JC GLY A -8 UNP A0ABY1INU EXPRESSION TAG SEQADV 26JC SER A -7 UNP A0ABY1INU EXPRESSION TAG SEQADV 26JC HIS A -6 UNP A0ABY1INU EXPRESSION TAG SEQADV 26JC HIS A -5 UNP A0ABY1INU EXPRESSION TAG SEQADV 26JC HIS A -4 UNP A0ABY1INU EXPRESSION TAG SEQADV 26JC HIS A -3 UNP A0ABY1INU EXPRESSION TAG SEQADV 26JC HIS A -2 UNP A0ABY1INU EXPRESSION TAG SEQADV 26JC HIS A -1 UNP A0ABY1INU EXPRESSION TAG SEQADV 26JC GLY A 0 UNP A0ABY1INU EXPRESSION TAG SEQADV 26JC SER A 1 UNP A0ABY1INU EXPRESSION TAG SEQADV 26JC MET B -10 UNP A0ABY1INU INITIATING METHIONINE SEQADV 26JC ARG B -9 UNP A0ABY1INU EXPRESSION TAG SEQADV 26JC GLY B -8 UNP A0ABY1INU EXPRESSION TAG SEQADV 26JC SER B -7 UNP A0ABY1INU EXPRESSION TAG SEQADV 26JC HIS B -6 UNP A0ABY1INU EXPRESSION TAG SEQADV 26JC HIS B -5 UNP A0ABY1INU EXPRESSION TAG SEQADV 26JC HIS B -4 UNP A0ABY1INU EXPRESSION TAG SEQADV 26JC HIS B -3 UNP A0ABY1INU EXPRESSION TAG SEQADV 26JC HIS B -2 UNP A0ABY1INU EXPRESSION TAG SEQADV 26JC HIS B -1 UNP A0ABY1INU EXPRESSION TAG SEQADV 26JC GLY B 0 UNP A0ABY1INU EXPRESSION TAG SEQADV 26JC SER B 1 UNP A0ABY1INU EXPRESSION TAG SEQRES 1 A 286 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER THR SEQRES 2 A 286 SER ILE ALA LEU PHE GLY ALA GLY GLY LYS MET GLY TYR SEQRES 3 A 286 ARG LEU ALA SER ASN LEU LYS GLY SER ARG PHE ASP VAL SEQRES 4 A 286 ARG HIS VAL GLU PRO SER GLU ALA GLY ALA LYS ARG LEU SEQRES 5 A 286 LYS ASP GLY LEU GLY PHE ASP CYS VAL PRO ALA GLU ALA SEQRES 6 A 286 ALA LEU ASP GLY ALA GLU VAL VAL VAL LEU ALA VAL PRO SEQRES 7 A 286 ASP THR LEU ILE GLY LYS VAL ALA ASN GLY ILE GLU LYS SEQRES 8 A 286 SER LEU LYS PRO GLY THR ILE VAL VAL VAL LEU ASP ALA SEQRES 9 A 286 ALA ALA PRO PHE ALA GLY HIS LEU PRO ASN ARG PRO ASP SEQRES 10 A 286 LEU THR TYR PHE VAL THR HIS PRO CYS HIS PRO PRO ILE SEQRES 11 A 286 PHE ASN ASP GLU THR GLU MET ASP ALA LYS ARG ASP PHE SEQRES 12 A 286 PHE GLY GLY ILE ALA ALA LYS GLN HIS ILE THR SER ALA SEQRES 13 A 286 LEU MET GLN GLY PRO ASP GLU HIS TYR ALA LEU GLY GLU SEQRES 14 A 286 GLU VAL ALA LYS VAL ILE TRP ALA PRO VAL MET ARG SER SEQRES 15 A 286 HIS ARG VAL THR VAL GLU GLN MET ALA LEU LEU GLU PRO SEQRES 16 A 286 GLY LEU SER GLU THR VAL CYS ALA SER LEU LEU VAL ALA SEQRES 17 A 286 MET LYS GLU ALA MET ASP GLU VAL VAL ALA ARG GLY VAL SEQRES 18 A 286 PRO LYS GLU ALA ALA ARG ASP PHE LEU LEU GLY HIS MET SEQRES 19 A 286 ASN VAL LEU GLY SER VAL ILE PHE GLU GLU THR PRO GLY SEQRES 20 A 286 VAL PHE SER ASP ALA CYS ASN LYS ALA ILE GLU PHE GLY SEQRES 21 A 286 LYS PRO MET LEU MET ARG ASP ASP TRP LYS ARG VAL PHE SEQRES 22 A 286 GLU PRO GLU GLU LEU ALA ALA SER ILE ARG ARG ILE THR SEQRES 1 B 286 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER THR SEQRES 2 B 286 SER ILE ALA LEU PHE GLY ALA GLY GLY LYS MET GLY TYR SEQRES 3 B 286 ARG LEU ALA SER ASN LEU LYS GLY SER ARG PHE ASP VAL SEQRES 4 B 286 ARG HIS VAL GLU PRO SER GLU ALA GLY ALA LYS ARG LEU SEQRES 5 B 286 LYS ASP GLY LEU GLY PHE ASP CYS VAL PRO ALA GLU ALA SEQRES 6 B 286 ALA LEU ASP GLY ALA GLU VAL VAL VAL LEU ALA VAL PRO SEQRES 7 B 286 ASP THR LEU ILE GLY LYS VAL ALA ASN GLY ILE GLU LYS SEQRES 8 B 286 SER LEU LYS PRO GLY THR ILE VAL VAL VAL LEU ASP ALA SEQRES 9 B 286 ALA ALA PRO PHE ALA GLY HIS LEU PRO ASN ARG PRO ASP SEQRES 10 B 286 LEU THR TYR PHE VAL THR HIS PRO CYS HIS PRO PRO ILE SEQRES 11 B 286 PHE ASN ASP GLU THR GLU MET ASP ALA LYS ARG ASP PHE SEQRES 12 B 286 PHE GLY GLY ILE ALA ALA LYS GLN HIS ILE THR SER ALA SEQRES 13 B 286 LEU MET GLN GLY PRO ASP GLU HIS TYR ALA LEU GLY GLU SEQRES 14 B 286 GLU VAL ALA LYS VAL ILE TRP ALA PRO VAL MET ARG SER SEQRES 15 B 286 HIS ARG VAL THR VAL GLU GLN MET ALA LEU LEU GLU PRO SEQRES 16 B 286 GLY LEU SER GLU THR VAL CYS ALA SER LEU LEU VAL ALA SEQRES 17 B 286 MET LYS GLU ALA MET ASP GLU VAL VAL ALA ARG GLY VAL SEQRES 18 B 286 PRO LYS GLU ALA ALA ARG ASP PHE LEU LEU GLY HIS MET SEQRES 19 B 286 ASN VAL LEU GLY SER VAL ILE PHE GLU GLU THR PRO GLY SEQRES 20 B 286 VAL PHE SER ASP ALA CYS ASN LYS ALA ILE GLU PHE GLY SEQRES 21 B 286 LYS PRO MET LEU MET ARG ASP ASP TRP LYS ARG VAL PHE SEQRES 22 B 286 GLU PRO GLU GLU LEU ALA ALA SER ILE ARG ARG ILE THR HET NAD A 301 44 HET ZN A 302 1 HET NAD B 301 44 HET ZN B 302 1 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM ZN ZINC ION FORMUL 3 NAD 2(C21 H27 N7 O14 P2) FORMUL 4 ZN 2(ZN 2+) FORMUL 7 HOH *849(H2 O) HELIX 1 AA1 GLY A 11 LYS A 22 1 12 HELIX 2 AA2 SER A 34 GLY A 46 1 13 HELIX 3 AA3 PRO A 51 ASP A 57 1 7 HELIX 4 AA4 LEU A 70 GLU A 79 1 10 HELIX 5 AA5 LYS A 80 LEU A 82 5 3 HELIX 6 AA6 ALA A 93 ALA A 98 1 6 HELIX 7 AA7 GLU A 125 ARG A 130 1 6 HELIX 8 AA8 GLU A 152 TRP A 165 1 14 HELIX 9 AA9 THR A 175 GLU A 183 1 9 HELIX 10 AB1 VAL A 190 ARG A 208 1 19 HELIX 11 AB2 PRO A 211 PHE A 231 1 21 HELIX 12 AB3 SER A 239 MET A 254 1 16 HELIX 13 AB4 ASP A 257 PHE A 262 5 6 HELIX 14 AB5 GLU A 263 THR A 275 1 13 HELIX 15 AB6 GLY B 11 LYS B 22 1 12 HELIX 16 AB7 SER B 34 GLY B 46 1 13 HELIX 17 AB8 PRO B 51 ASP B 57 1 7 HELIX 18 AB9 PRO B 67 THR B 69 5 3 HELIX 19 AC1 LEU B 70 GLU B 79 1 10 HELIX 20 AC2 LYS B 80 LEU B 82 5 3 HELIX 21 AC3 ALA B 93 ALA B 98 1 6 HELIX 22 AC4 GLU B 125 ARG B 130 1 6 HELIX 23 AC5 PRO B 150 GLU B 152 5 3 HELIX 24 AC6 HIS B 153 TRP B 165 1 13 HELIX 25 AC7 THR B 175 GLU B 183 1 9 HELIX 26 AC8 VAL B 190 ARG B 208 1 19 HELIX 27 AC9 PRO B 211 PHE B 231 1 21 HELIX 28 AD1 SER B 239 MET B 254 1 16 HELIX 29 AD2 ASP B 257 PHE B 262 5 6 HELIX 30 AD3 GLU B 263 THR B 275 1 13 SHEET 1 AA1 7 ASP A 27 VAL A 31 0 SHEET 2 AA1 7 SER A 3 PHE A 7 1 N ILE A 4 O ARG A 29 SHEET 3 AA1 7 VAL A 61 LEU A 64 1 O VAL A 63 N ALA A 5 SHEET 4 AA1 7 ILE A 87 VAL A 90 1 O VAL A 89 N VAL A 62 SHEET 5 AA1 7 THR A 108 PRO A 114 1 O THR A 108 N VAL A 88 SHEET 6 AA1 7 GLN A 140 GLN A 148 -1 O ALA A 145 N VAL A 111 SHEET 7 AA1 7 VAL A 168 ARG A 173 1 O HIS A 172 N ILE A 142 SHEET 1 AA2 7 ASP B 27 VAL B 31 0 SHEET 2 AA2 7 SER B 3 PHE B 7 1 N LEU B 6 O VAL B 31 SHEET 3 AA2 7 VAL B 61 LEU B 64 1 O VAL B 63 N PHE B 7 SHEET 4 AA2 7 ILE B 87 VAL B 90 1 O VAL B 89 N VAL B 62 SHEET 5 AA2 7 THR B 108 PRO B 114 1 O THR B 108 N VAL B 88 SHEET 6 AA2 7 GLN B 140 GLN B 148 -1 O ALA B 145 N VAL B 111 SHEET 7 AA2 7 VAL B 168 ARG B 173 1 O HIS B 172 N ILE B 142 LINK NE2 HIS A 113 ZN ZN A 302 1555 1555 2.08 LINK OE1 GLU A 183 ZN ZN A 302 1555 1555 1.96 LINK NE2 HIS A 222 ZN ZN B 302 1555 1555 2.13 LINK ZN ZN A 302 NE2 HIS B 222 1555 1555 2.14 LINK NE2 HIS B 113 ZN ZN B 302 1555 1555 2.04 LINK OE1 GLU B 183 ZN ZN B 302 1555 1555 1.99 CISPEP 1 ALA A 166 PRO A 167 0 3.83 CISPEP 2 GLU A 183 PRO A 184 0 11.64 CISPEP 3 ALA B 166 PRO B 167 0 2.82 CISPEP 4 GLU B 183 PRO B 184 0 11.88 CRYST1 71.188 75.638 104.398 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014047 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013221 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009579 0.00000 CONECT 819 4211 CONECT 1378 4211 CONECT 1664 4256 CONECT 2907 4256 CONECT 3457 4256 CONECT 3743 4211 CONECT 4167 4168 4169 4170 4189 CONECT 4168 4167 CONECT 4169 4167 CONECT 4170 4167 4171 CONECT 4171 4170 4172 CONECT 4172 4171 4173 4174 CONECT 4173 4172 4178 CONECT 4174 4172 4175 4176 CONECT 4175 4174 CONECT 4176 4174 4177 4178 CONECT 4177 4176 CONECT 4178 4173 4176 4179 CONECT 4179 4178 4180 4188 CONECT 4180 4179 4181 CONECT 4181 4180 4182 CONECT 4182 4181 4183 4188 CONECT 4183 4182 4184 4185 CONECT 4184 4183 CONECT 4185 4183 4186 CONECT 4186 4185 4187 CONECT 4187 4186 4188 CONECT 4188 4179 4182 4187 CONECT 4189 4167 4190 CONECT 4190 4189 4191 4192 4193 CONECT 4191 4190 CONECT 4192 4190 CONECT 4193 4190 4194 CONECT 4194 4193 4195 CONECT 4195 4194 4196 4197 CONECT 4196 4195 4201 CONECT 4197 4195 4198 4199 CONECT 4198 4197 CONECT 4199 4197 4200 4201 CONECT 4200 4199 CONECT 4201 4196 4199 4202 CONECT 4202 4201 4203 4210 CONECT 4203 4202 4204 CONECT 4204 4203 4205 4208 CONECT 4205 4204 4206 4207 CONECT 4206 4205 CONECT 4207 4205 CONECT 4208 4204 4209 CONECT 4209 4208 4210 CONECT 4210 4202 4209 CONECT 4211 819 1378 3743 CONECT 4212 4213 4214 4215 4234 CONECT 4213 4212 CONECT 4214 4212 CONECT 4215 4212 4216 CONECT 4216 4215 4217 CONECT 4217 4216 4218 4219 CONECT 4218 4217 4223 CONECT 4219 4217 4220 4221 CONECT 4220 4219 CONECT 4221 4219 4222 4223 CONECT 4222 4221 CONECT 4223 4218 4221 4224 CONECT 4224 4223 4225 4233 CONECT 4225 4224 4226 CONECT 4226 4225 4227 CONECT 4227 4226 4228 4233 CONECT 4228 4227 4229 4230 CONECT 4229 4228 CONECT 4230 4228 4231 CONECT 4231 4230 4232 CONECT 4232 4231 4233 CONECT 4233 4224 4227 4232 CONECT 4234 4212 4235 CONECT 4235 4234 4236 4237 4238 CONECT 4236 4235 CONECT 4237 4235 CONECT 4238 4235 4239 CONECT 4239 4238 4240 CONECT 4240 4239 4241 4242 CONECT 4241 4240 4246 CONECT 4242 4240 4243 4244 CONECT 4243 4242 CONECT 4244 4242 4245 4246 CONECT 4245 4244 CONECT 4246 4241 4244 4247 CONECT 4247 4246 4248 4255 CONECT 4248 4247 4249 CONECT 4249 4248 4250 4253 CONECT 4250 4249 4251 4252 CONECT 4251 4250 CONECT 4252 4250 CONECT 4253 4249 4254 CONECT 4254 4253 4255 CONECT 4255 4247 4254 CONECT 4256 1664 2907 3457 MASTER 413 0 4 30 14 0 0 6 5075 2 96 44 END