data_26JT # _entry.id 26JT # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.414 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 26JT pdb_000026jt 10.2210/pdb26jt/pdb WWPDB D_1300073212 ? ? BMRB 36850 ? 10.13018/BMR36850 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2026-06-24 _pdbx_audit_revision_history.part_number ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr . _pdbx_database_status.entry_id 26JT _pdbx_database_status.recvd_initial_deposition_date 2026-05-03 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBC _pdbx_database_status.status_code_cs . _pdbx_database_status.status_code_nmr_data REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible N # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'NMR Solution Structures of CX-5461-MYT1L Complex' _pdbx_database_related.db_id 36850 _pdbx_database_related.content_type unspecified # _pdbx_contact_author.id 2 _pdbx_contact_author.email ccao@mail.sioc.ac.cn _pdbx_contact_author.name_first chunyang _pdbx_contact_author.name_last cao _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-7865-8249 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Li, Y.' 1 0009-0003-3895-6980 'Cao, C.' 2 0000-0001-7865-8249 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Structural Insights into the Binding of CX-5461 and MTR-106 to G-Quadruplex DNA' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Li, Y.' 1 0009-0003-3895-6980 primary 'Cao, C.' 2 0000-0001-7865-8249 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'DNA (29-MER)' 9216.901 1 ? ? ? ? 2 non-polymer syn ;2-(4-methyl-1,4-diazepan-1-yl)-~{N}-[(5-methylpyrazin-2-yl)methyl]-5-oxidanylidene-[1,3]benzothiazolo[3,2-a][1,8]naphthyridine-6-carboxamide ; 513.614 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;(DA)(DG)(DG)(DG)(DA)(DG)(DA)(DG)(DG)(DA)(DG)(DA)(DG)(DC)(DT)(DC)(DT)(DG)(DG)(DG) (DT)(DT)(DG)(DG)(DG)(DT)(DG)(DG)(DG) ; _entity_poly.pdbx_seq_one_letter_code_can AGGGAGAGGAGAGCTCTGGGTTGGGTGGG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name ;2-(4-methyl-1,4-diazepan-1-yl)-~{N}-[(5-methylpyrazin-2-yl)methyl]-5-oxidanylidene-[1,3]benzothiazolo[3,2-a][1,8]naphthyridine-6-carboxamide ; _pdbx_entity_nonpoly.comp_id A1EOB # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DA n 1 2 DG n 1 3 DG n 1 4 DG n 1 5 DA n 1 6 DG n 1 7 DA n 1 8 DG n 1 9 DG n 1 10 DA n 1 11 DG n 1 12 DA n 1 13 DG n 1 14 DC n 1 15 DT n 1 16 DC n 1 17 DT n 1 18 DG n 1 19 DG n 1 20 DG n 1 21 DT n 1 22 DT n 1 23 DG n 1 24 DG n 1 25 DG n 1 26 DT n 1 27 DG n 1 28 DG n 1 29 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 29 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A1EOB non-polymer . ;2-(4-methyl-1,4-diazepan-1-yl)-~{N}-[(5-methylpyrazin-2-yl)methyl]-5-oxidanylidene-[1,3]benzothiazolo[3,2-a][1,8]naphthyridine-6-carboxamide ; ? 'C27 H27 N7 O2 S' 513.614 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DA 1 1 1 DA DA A . n A 1 2 DG 2 2 2 DG DG A . n A 1 3 DG 3 3 3 DG DG A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DA 5 5 5 DA DA A . n A 1 6 DG 6 6 6 DG DG A . n A 1 7 DA 7 7 7 DA DA A . n A 1 8 DG 8 8 8 DG DG A . n A 1 9 DG 9 9 9 DG DG A . n A 1 10 DA 10 10 10 DA DA A . n A 1 11 DG 11 11 11 DG DG A . n A 1 12 DA 12 12 12 DA DA A . n A 1 13 DG 13 13 13 DG DG A . n A 1 14 DC 14 14 14 DC DC A . n A 1 15 DT 15 15 15 DT DT A . n A 1 16 DC 16 16 16 DC DC A . n A 1 17 DT 17 17 17 DT DT A . n A 1 18 DG 18 18 18 DG DG A . n A 1 19 DG 19 19 19 DG DG A . n A 1 20 DG 20 20 20 DG DG A . n A 1 21 DT 21 21 21 DT DT A . n A 1 22 DT 22 22 22 DT DT A . n A 1 23 DG 23 23 23 DG DG A . n A 1 24 DG 24 24 24 DG DG A . n A 1 25 DG 25 25 25 DG DG A . n A 1 26 DT 26 26 26 DT DT A . n A 1 27 DG 27 27 27 DG DG A . n A 1 28 DG 28 28 28 DG DG A . n A 1 29 DG 29 29 29 DG DG A . n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id A1EOB _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id A1EOB _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id A1EOB _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 101 _pdbx_nonpoly_scheme.auth_seq_num 30 _pdbx_nonpoly_scheme.pdb_mon_id A1EOB _pdbx_nonpoly_scheme.auth_mon_id EOB _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 26JT _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 26JT _struct.title 'NMR Solution Structures of CX-5461-MYT1L Complex' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 26JT _struct_keywords.text 'G-quadruplex Solution structure Anti-cancer drug target, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 26JT _struct_ref.pdbx_db_accession 26JT _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 26JT _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 29 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 26JT _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 29 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 29 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'NMR Distance Restraints' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0 _pdbx_struct_oper_list.matrix[1][2] 0.0 _pdbx_struct_oper_list.matrix[1][3] 0.0 _pdbx_struct_oper_list.vector[1] 0.0 _pdbx_struct_oper_list.matrix[2][1] 0.0 _pdbx_struct_oper_list.matrix[2][2] 1.0 _pdbx_struct_oper_list.matrix[2][3] 0.0 _pdbx_struct_oper_list.vector[2] 0.0 _pdbx_struct_oper_list.matrix[3][1] 0.0 _pdbx_struct_oper_list.matrix[3][2] 0.0 _pdbx_struct_oper_list.matrix[3][3] 1.0 _pdbx_struct_oper_list.vector[3] 0.0 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DA 1 N6 ? ? ? 1_555 A DT 22 O4 ? ? A DA 1 A DT 22 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog2 hydrog ? ? A DA 1 N7 ? ? ? 1_555 A DT 22 N3 ? ? A DA 1 A DT 22 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog3 hydrog ? ? A DG 2 N7 ? ? ? 1_555 A DG 20 N2 ? ? A DG 2 A DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog4 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DG 20 N1 ? ? A DG 2 A DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog5 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DG 27 O6 ? ? A DG 2 A DG 27 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog6 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DG 27 N7 ? ? A DG 2 A DG 27 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog7 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DG 19 O6 ? ? A DG 3 A DG 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog8 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DG 19 N7 ? ? A DG 3 A DG 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog9 hydrog ? ? A DG 3 N7 ? ? ? 1_555 A DG 28 N2 ? ? A DG 3 A DG 28 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog10 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DG 28 N1 ? ? A DG 3 A DG 28 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog11 hydrog ? ? A DG 4 N1 ? ? ? 1_555 A DG 18 O6 ? ? A DG 4 A DG 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog12 hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DG 18 N7 ? ? A DG 4 A DG 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog13 hydrog ? ? A DG 4 N7 ? ? ? 1_555 A DG 29 N2 ? ? A DG 4 A DG 29 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog14 hydrog ? ? A DG 4 O6 ? ? ? 1_555 A DG 29 N1 ? ? A DG 4 A DG 29 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog15 hydrog ? ? A DA 5 N1 ? ? ? 1_555 A DT 17 N3 ? ? A DA 5 A DT 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 5 N6 ? ? ? 1_555 A DT 17 O4 ? ? A DA 5 A DT 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DC 16 N3 ? ? A DG 6 A DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DC 16 O2 ? ? A DG 6 A DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DC 16 N4 ? ? A DG 6 A DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DA 7 N1 ? ? ? 1_555 A DT 15 N3 ? ? A DA 7 A DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DA 7 N6 ? ? ? 1_555 A DT 15 O4 ? ? A DA 7 A DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 8 N7 ? ? ? 1_555 A DG 11 N2 ? ? A DG 8 A DG 11 1_555 ? ? ? ? ? ? 'DG-DG MISPAIR' ? ? ? hydrog23 hydrog ? ? A DG 18 N1 ? ? ? 1_555 A DG 25 O6 ? ? A DG 18 A DG 25 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog24 hydrog ? ? A DG 18 N2 ? ? ? 1_555 A DG 25 N7 ? ? A DG 18 A DG 25 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog25 hydrog ? ? A DG 19 N1 ? ? ? 1_555 A DG 24 O6 ? ? A DG 19 A DG 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog26 hydrog ? ? A DG 19 N2 ? ? ? 1_555 A DG 24 N7 ? ? A DG 19 A DG 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog27 hydrog ? ? A DG 20 N7 ? ? ? 1_555 A DG 23 N2 ? ? A DG 20 A DG 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog28 hydrog ? ? A DG 20 O6 ? ? ? 1_555 A DG 23 N1 ? ? A DG 20 A DG 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog29 hydrog ? ? A DG 23 N7 ? ? ? 1_555 A DG 27 N2 ? ? A DG 23 A DG 27 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog30 hydrog ? ? A DG 23 O6 ? ? ? 1_555 A DG 27 N1 ? ? A DG 23 A DG 27 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog31 hydrog ? ? A DG 24 N1 ? ? ? 1_555 A DG 28 O6 ? ? A DG 24 A DG 28 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog32 hydrog ? ? A DG 24 N2 ? ? ? 1_555 A DG 28 N7 ? ? A DG 24 A DG 28 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog33 hydrog ? ? A DG 25 N1 ? ? ? 1_555 A DG 29 O6 ? ? A DG 25 A DG 29 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog34 hydrog ? ? A DG 25 N2 ? ? ? 1_555 A DG 29 N7 ? ? A DG 25 A DG 29 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_entry_details.entry_id 26JT _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 H62 A DA 1 ? ? O4 A DT 22 ? ? 1.41 2 2 H62 A DA 1 ? ? O4 A DT 22 ? ? 1.43 3 3 H62 A DA 1 ? ? O4 A DT 22 ? ? 1.43 4 3 H1 A DG 8 ? ? OP2 A DC 14 ? ? 1.60 5 4 H62 A DA 1 ? ? O4 A DT 22 ? ? 1.43 6 4 "O3'" A DA 12 ? ? H42 A DC 14 ? ? 1.45 7 4 H22 A DG 9 ? ? "O5'" A DG 11 ? ? 1.47 8 5 H62 A DA 1 ? ? O4 A DT 22 ? ? 1.42 9 5 H1 A DG 8 ? ? OP2 A DC 14 ? ? 1.58 10 6 H62 A DA 1 ? ? O4 A DT 22 ? ? 1.42 11 6 H1 A DG 8 ? ? OP2 A DC 14 ? ? 1.47 12 7 H62 A DA 1 ? ? O4 A DT 22 ? ? 1.42 13 7 H1 A DG 8 ? ? OP2 A DC 14 ? ? 1.50 14 8 H62 A DA 1 ? ? O4 A DT 22 ? ? 1.42 15 8 H1 A DG 8 ? ? OP2 A DC 14 ? ? 1.55 16 9 H62 A DA 1 ? ? O4 A DT 22 ? ? 1.42 17 9 H1 A DG 8 ? ? OP2 A DC 14 ? ? 1.58 18 10 H62 A DA 1 ? ? O4 A DT 22 ? ? 1.43 19 10 H1 A DG 8 ? ? OP2 A DC 14 ? ? 1.57 20 11 H62 A DA 1 ? ? O4 A DT 22 ? ? 1.42 21 11 H1 A DG 8 ? ? OP2 A DC 14 ? ? 1.56 22 12 H62 A DA 1 ? ? O4 A DT 22 ? ? 1.44 23 12 H21 A DG 25 ? ? O6 A DG 29 ? ? 1.57 24 12 "H1'" A DG 9 ? ? N7 A DG 11 ? ? 1.59 25 13 H62 A DA 1 ? ? O4 A DT 22 ? ? 1.42 26 14 H62 A DA 1 ? ? O4 A DT 22 ? ? 1.42 27 15 H62 A DA 1 ? ? O4 A DT 22 ? ? 1.42 28 16 H62 A DA 1 ? ? O4 A DT 22 ? ? 1.41 29 17 H62 A DA 1 ? ? O4 A DT 22 ? ? 1.41 30 18 H62 A DA 1 ? ? O4 A DT 22 ? ? 1.43 31 18 H1 A DG 8 ? ? OP2 A DC 14 ? ? 1.52 32 19 H62 A DA 1 ? ? O4 A DT 22 ? ? 1.43 33 19 H1 A DG 8 ? ? OP2 A DC 14 ? ? 1.58 34 20 H62 A DA 1 ? ? O4 A DT 22 ? ? 1.42 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C1'" A DG 18 ? ? "O4'" A DG 18 ? ? "C4'" A DG 18 ? ? 101.52 110.10 -8.58 1.00 N 2 1 "C1'" A DG 19 ? ? "O4'" A DG 19 ? ? "C4'" A DG 19 ? ? 100.51 110.10 -9.59 1.00 N 3 1 "C1'" A DG 23 ? ? "O4'" A DG 23 ? ? "C4'" A DG 23 ? ? 102.33 110.10 -7.77 1.00 N 4 2 "C1'" A DG 18 ? ? "O4'" A DG 18 ? ? "C4'" A DG 18 ? ? 101.16 110.10 -8.94 1.00 N 5 2 "C1'" A DG 19 ? ? "O4'" A DG 19 ? ? "C4'" A DG 19 ? ? 100.48 110.10 -9.62 1.00 N 6 2 "C1'" A DG 23 ? ? "O4'" A DG 23 ? ? "C4'" A DG 23 ? ? 102.36 110.10 -7.74 1.00 N 7 3 "C1'" A DG 18 ? ? "O4'" A DG 18 ? ? "C4'" A DG 18 ? ? 101.57 110.10 -8.53 1.00 N 8 3 "C1'" A DG 19 ? ? "O4'" A DG 19 ? ? "C4'" A DG 19 ? ? 100.52 110.10 -9.58 1.00 N 9 3 "C1'" A DG 23 ? ? "O4'" A DG 23 ? ? "C4'" A DG 23 ? ? 102.20 110.10 -7.90 1.00 N 10 4 "C1'" A DG 18 ? ? "O4'" A DG 18 ? ? "C4'" A DG 18 ? ? 101.74 110.10 -8.36 1.00 N 11 4 "C1'" A DG 19 ? ? "O4'" A DG 19 ? ? "C4'" A DG 19 ? ? 100.62 110.10 -9.48 1.00 N 12 4 "C1'" A DG 23 ? ? "O4'" A DG 23 ? ? "C4'" A DG 23 ? ? 102.40 110.10 -7.70 1.00 N 13 5 "C1'" A DG 18 ? ? "O4'" A DG 18 ? ? "C4'" A DG 18 ? ? 101.37 110.10 -8.73 1.00 N 14 5 "C1'" A DG 19 ? ? "O4'" A DG 19 ? ? "C4'" A DG 19 ? ? 100.32 110.10 -9.78 1.00 N 15 5 "C1'" A DG 23 ? ? "O4'" A DG 23 ? ? "C4'" A DG 23 ? ? 102.20 110.10 -7.90 1.00 N 16 6 "C1'" A DG 9 ? ? "O4'" A DG 9 ? ? "C4'" A DG 9 ? ? 103.65 110.10 -6.45 1.00 N 17 6 "C1'" A DG 18 ? ? "O4'" A DG 18 ? ? "C4'" A DG 18 ? ? 101.39 110.10 -8.71 1.00 N 18 6 "C1'" A DG 19 ? ? "O4'" A DG 19 ? ? "C4'" A DG 19 ? ? 100.57 110.10 -9.53 1.00 N 19 6 "C1'" A DG 23 ? ? "O4'" A DG 23 ? ? "C4'" A DG 23 ? ? 102.90 110.10 -7.20 1.00 N 20 7 "C1'" A DG 18 ? ? "O4'" A DG 18 ? ? "C4'" A DG 18 ? ? 101.28 110.10 -8.82 1.00 N 21 7 "C1'" A DG 19 ? ? "O4'" A DG 19 ? ? "C4'" A DG 19 ? ? 100.49 110.10 -9.61 1.00 N 22 7 "C1'" A DG 23 ? ? "O4'" A DG 23 ? ? "C4'" A DG 23 ? ? 102.33 110.10 -7.77 1.00 N 23 8 "C1'" A DG 18 ? ? "O4'" A DG 18 ? ? "C4'" A DG 18 ? ? 101.19 110.10 -8.91 1.00 N 24 8 "C1'" A DG 19 ? ? "O4'" A DG 19 ? ? "C4'" A DG 19 ? ? 100.52 110.10 -9.58 1.00 N 25 8 "C1'" A DG 23 ? ? "O4'" A DG 23 ? ? "C4'" A DG 23 ? ? 102.50 110.10 -7.60 1.00 N 26 9 "C1'" A DG 18 ? ? "O4'" A DG 18 ? ? "C4'" A DG 18 ? ? 101.15 110.10 -8.95 1.00 N 27 9 "C1'" A DG 19 ? ? "O4'" A DG 19 ? ? "C4'" A DG 19 ? ? 100.58 110.10 -9.52 1.00 N 28 9 "C1'" A DG 23 ? ? "O4'" A DG 23 ? ? "C4'" A DG 23 ? ? 102.34 110.10 -7.76 1.00 N 29 10 "C1'" A DG 18 ? ? "O4'" A DG 18 ? ? "C4'" A DG 18 ? ? 101.19 110.10 -8.91 1.00 N 30 10 "C1'" A DG 19 ? ? "O4'" A DG 19 ? ? "C4'" A DG 19 ? ? 100.53 110.10 -9.57 1.00 N 31 10 "C1'" A DG 23 ? ? "O4'" A DG 23 ? ? "C4'" A DG 23 ? ? 102.44 110.10 -7.66 1.00 N 32 11 "C1'" A DG 18 ? ? "O4'" A DG 18 ? ? "C4'" A DG 18 ? ? 101.46 110.10 -8.64 1.00 N 33 11 "C1'" A DG 19 ? ? "O4'" A DG 19 ? ? "C4'" A DG 19 ? ? 100.79 110.10 -9.31 1.00 N 34 11 "C1'" A DG 23 ? ? "O4'" A DG 23 ? ? "C4'" A DG 23 ? ? 102.32 110.10 -7.78 1.00 N 35 12 "C1'" A DG 18 ? ? "O4'" A DG 18 ? ? "C4'" A DG 18 ? ? 101.83 110.10 -8.27 1.00 N 36 12 "C1'" A DG 19 ? ? "O4'" A DG 19 ? ? "C4'" A DG 19 ? ? 100.69 110.10 -9.41 1.00 N 37 12 "C1'" A DG 23 ? ? "O4'" A DG 23 ? ? "C4'" A DG 23 ? ? 102.52 110.10 -7.58 1.00 N 38 13 "C1'" A DG 18 ? ? "O4'" A DG 18 ? ? "C4'" A DG 18 ? ? 100.97 110.10 -9.13 1.00 N 39 13 "C1'" A DG 19 ? ? "O4'" A DG 19 ? ? "C4'" A DG 19 ? ? 100.75 110.10 -9.35 1.00 N 40 13 "C1'" A DG 23 ? ? "O4'" A DG 23 ? ? "C4'" A DG 23 ? ? 102.52 110.10 -7.58 1.00 N 41 14 "C1'" A DG 18 ? ? "O4'" A DG 18 ? ? "C4'" A DG 18 ? ? 101.35 110.10 -8.75 1.00 N 42 14 "C1'" A DG 19 ? ? "O4'" A DG 19 ? ? "C4'" A DG 19 ? ? 100.83 110.10 -9.27 1.00 N 43 14 "C1'" A DG 23 ? ? "O4'" A DG 23 ? ? "C4'" A DG 23 ? ? 102.57 110.10 -7.53 1.00 N 44 15 "C1'" A DG 18 ? ? "O4'" A DG 18 ? ? "C4'" A DG 18 ? ? 101.32 110.10 -8.78 1.00 N 45 15 "C1'" A DG 19 ? ? "O4'" A DG 19 ? ? "C4'" A DG 19 ? ? 100.52 110.10 -9.58 1.00 N 46 15 "C1'" A DG 23 ? ? "O4'" A DG 23 ? ? "C4'" A DG 23 ? ? 102.47 110.10 -7.63 1.00 N 47 16 "C1'" A DG 18 ? ? "O4'" A DG 18 ? ? "C4'" A DG 18 ? ? 102.34 110.10 -7.76 1.00 N 48 16 "C1'" A DG 19 ? ? "O4'" A DG 19 ? ? "C4'" A DG 19 ? ? 100.76 110.10 -9.34 1.00 N 49 16 "C1'" A DG 23 ? ? "O4'" A DG 23 ? ? "C4'" A DG 23 ? ? 102.53 110.10 -7.57 1.00 N 50 17 "C1'" A DG 9 ? ? "O4'" A DG 9 ? ? "C4'" A DG 9 ? ? 103.33 110.10 -6.77 1.00 N 51 17 "C1'" A DG 18 ? ? "O4'" A DG 18 ? ? "C4'" A DG 18 ? ? 101.69 110.10 -8.41 1.00 N 52 17 "C1'" A DG 19 ? ? "O4'" A DG 19 ? ? "C4'" A DG 19 ? ? 100.51 110.10 -9.59 1.00 N 53 17 "C1'" A DG 23 ? ? "O4'" A DG 23 ? ? "C4'" A DG 23 ? ? 103.22 110.10 -6.88 1.00 N 54 18 "C1'" A DG 18 ? ? "O4'" A DG 18 ? ? "C4'" A DG 18 ? ? 101.45 110.10 -8.65 1.00 N 55 18 "C1'" A DG 19 ? ? "O4'" A DG 19 ? ? "C4'" A DG 19 ? ? 100.37 110.10 -9.73 1.00 N 56 18 "C1'" A DG 23 ? ? "O4'" A DG 23 ? ? "C4'" A DG 23 ? ? 102.28 110.10 -7.82 1.00 N 57 19 C6 A DT 17 ? ? C5 A DT 17 ? ? C7 A DT 17 ? ? 119.26 122.90 -3.64 0.60 N 58 19 "C1'" A DG 18 ? ? "O4'" A DG 18 ? ? "C4'" A DG 18 ? ? 102.05 110.10 -8.05 1.00 N 59 19 "C1'" A DG 19 ? ? "O4'" A DG 19 ? ? "C4'" A DG 19 ? ? 100.75 110.10 -9.35 1.00 N 60 19 "C1'" A DG 23 ? ? "O4'" A DG 23 ? ? "C4'" A DG 23 ? ? 102.52 110.10 -7.58 1.00 N 61 20 "C1'" A DG 18 ? ? "O4'" A DG 18 ? ? "C4'" A DG 18 ? ? 101.98 110.10 -8.12 1.00 N 62 20 "C1'" A DG 19 ? ? "O4'" A DG 19 ? ? "C4'" A DG 19 ? ? 100.77 110.10 -9.33 1.00 N 63 20 "C1'" A DG 23 ? ? "O4'" A DG 23 ? ? "C4'" A DG 23 ? ? 103.03 110.10 -7.07 1.00 N # _pdbx_nmr_ensemble.entry_id 26JT _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 26JT _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.0 mM MYT1L_CX-5461 Complex, 95% H2O/5% D2O' _pdbx_nmr_sample_details.solvent_system '95% H2O/5% D2O' _pdbx_nmr_sample_details.label 'MYT1L_CX-5461 Complex' _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details 'The solution of the MYT1L_CX_5461 complex at a concentration of 1 mM.' # _pdbx_nmr_exptl_sample.solution_id 1 _pdbx_nmr_exptl_sample.component 'MYT1L_CX-5461 Complex' _pdbx_nmr_exptl_sample.concentration 1.0 _pdbx_nmr_exptl_sample.concentration_range ? _pdbx_nmr_exptl_sample.concentration_units mM _pdbx_nmr_exptl_sample.isotopic_labeling 'natural abundance' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 52 _pdbx_nmr_exptl_sample_conditions.details 'A buffer solution consisting of 10 mM potassium phosphate and 30 mM potassium chloride, pH 7.0.' _pdbx_nmr_exptl_sample_conditions.ionic_strength_err 0.1 _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label condition_1 _pdbx_nmr_exptl_sample_conditions.pH_err 0.05 _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err 0.01 _pdbx_nmr_exptl_sample_conditions.temperature_err 0.2 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-1H NOESY' 2 isotropic 2 1 1 '2D 1H-1H TOCSY' 2 isotropic 3 1 1 '2D DQF-COSY' 2 isotropic # _pdbx_nmr_refine.entry_id 26JT _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 2 # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 refinement CNS ? 'Brunger A. T. et.al.' 2 'structure calculation' 'X-PLOR NIH' ? 'Schwieters, Kuszewski, Tjandra and Clore' 3 'chemical shift assignment' Sparky ? Goddard 4 'peak picking' Sparky ? Goddard # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A1EOB C21 C N N 1 A1EOB C19 C Y N 2 A1EOB N5 N Y N 3 A1EOB C18 C Y N 4 A1EOB C17 C Y N 5 A1EOB N4 N Y N 6 A1EOB C20 C Y N 7 A1EOB C16 C N N 8 A1EOB N3 N N N 9 A1EOB C15 C N N 10 A1EOB O2 O N N 11 A1EOB C8 C N N 12 A1EOB C9 C N N 13 A1EOB O1 O N N 14 A1EOB C10 C Y N 15 A1EOB C11 C Y N 16 A1EOB C12 C Y N 17 A1EOB C13 C Y N 18 A1EOB N2 N Y N 19 A1EOB C14 C Y N 20 A1EOB N1 N N N 21 A1EOB C7 C N N 22 A1EOB S1 S N N 23 A1EOB C4 C Y N 24 A1EOB C5 C Y N 25 A1EOB C6 C Y N 26 A1EOB C1 C Y N 27 A1EOB C2 C Y N 28 A1EOB C3 C Y N 29 A1EOB N6 N N N 30 A1EOB C26 C N N 31 A1EOB C25 C N N 32 A1EOB C24 C N N 33 A1EOB N7 N N N 34 A1EOB C27 C N N 35 A1EOB C23 C N N 36 A1EOB C22 C N N 37 A1EOB H13 H N N 38 A1EOB H14 H N N 39 A1EOB H12 H N N 40 A1EOB H11 H N N 41 A1EOB H10 H N N 42 A1EOB H9 H N N 43 A1EOB H8 H N N 44 A1EOB H7 H N N 45 A1EOB H6 H N N 46 A1EOB H5 H N N 47 A1EOB H4 H N N 48 A1EOB H1 H N N 49 A1EOB H2 H N N 50 A1EOB H3 H N N 51 A1EOB H24 H N N 52 A1EOB H23 H N N 53 A1EOB H21 H N N 54 A1EOB H22 H N N 55 A1EOB H19 H N N 56 A1EOB H20 H N N 57 A1EOB H25 H N N 58 A1EOB H26 H N N 59 A1EOB H27 H N N 60 A1EOB H18 H N N 61 A1EOB H17 H N N 62 A1EOB H15 H N N 63 A1EOB H16 H N N 64 DA OP3 O N N 65 DA P P N N 66 DA OP1 O N N 67 DA OP2 O N N 68 DA "O5'" O N N 69 DA "C5'" C N N 70 DA "C4'" C N R 71 DA "O4'" O N N 72 DA "C3'" C N S 73 DA "O3'" O N N 74 DA "C2'" C N N 75 DA "C1'" C N R 76 DA N9 N Y N 77 DA C8 C Y N 78 DA N7 N Y N 79 DA C5 C Y N 80 DA C6 C Y N 81 DA N6 N N N 82 DA N1 N Y N 83 DA C2 C Y N 84 DA N3 N Y N 85 DA C4 C Y N 86 DA HOP3 H N N 87 DA HOP2 H N N 88 DA "H5'" H N N 89 DA "H5''" H N N 90 DA "H4'" H N N 91 DA "H3'" H N N 92 DA "HO3'" H N N 93 DA "H2'" H N N 94 DA "H2''" H N N 95 DA "H1'" H N N 96 DA H8 H N N 97 DA H61 H N N 98 DA H62 H N N 99 DA H2 H N N 100 DC OP3 O N N 101 DC P P N N 102 DC OP1 O N N 103 DC OP2 O N N 104 DC "O5'" O N N 105 DC "C5'" C N N 106 DC "C4'" C N R 107 DC "O4'" O N N 108 DC "C3'" C N S 109 DC "O3'" O N N 110 DC "C2'" C N N 111 DC "C1'" C N R 112 DC N1 N N N 113 DC C2 C N N 114 DC O2 O N N 115 DC N3 N N N 116 DC C4 C N N 117 DC N4 N N N 118 DC C5 C N N 119 DC C6 C N N 120 DC HOP3 H N N 121 DC HOP2 H N N 122 DC "H5'" H N N 123 DC "H5''" H N N 124 DC "H4'" H N N 125 DC "H3'" H N N 126 DC "HO3'" H N N 127 DC "H2'" H N N 128 DC "H2''" H N N 129 DC "H1'" H N N 130 DC H41 H N N 131 DC H42 H N N 132 DC H5 H N N 133 DC H6 H N N 134 DG OP3 O N N 135 DG P P N N 136 DG OP1 O N N 137 DG OP2 O N N 138 DG "O5'" O N N 139 DG "C5'" C N N 140 DG "C4'" C N R 141 DG "O4'" O N N 142 DG "C3'" C N S 143 DG "O3'" O N N 144 DG "C2'" C N N 145 DG "C1'" C N R 146 DG N9 N Y N 147 DG C8 C Y N 148 DG N7 N Y N 149 DG C5 C Y N 150 DG C6 C N N 151 DG O6 O N N 152 DG N1 N N N 153 DG C2 C N N 154 DG N2 N N N 155 DG N3 N N N 156 DG C4 C Y N 157 DG HOP3 H N N 158 DG HOP2 H N N 159 DG "H5'" H N N 160 DG "H5''" H N N 161 DG "H4'" H N N 162 DG "H3'" H N N 163 DG "HO3'" H N N 164 DG "H2'" H N N 165 DG "H2''" H N N 166 DG "H1'" H N N 167 DG H8 H N N 168 DG H1 H N N 169 DG H21 H N N 170 DG H22 H N N 171 DT OP3 O N N 172 DT P P N N 173 DT OP1 O N N 174 DT OP2 O N N 175 DT "O5'" O N N 176 DT "C5'" C N N 177 DT "C4'" C N R 178 DT "O4'" O N N 179 DT "C3'" C N S 180 DT "O3'" O N N 181 DT "C2'" C N N 182 DT "C1'" C N R 183 DT N1 N N N 184 DT C2 C N N 185 DT O2 O N N 186 DT N3 N N N 187 DT C4 C N N 188 DT O4 O N N 189 DT C5 C N N 190 DT C7 C N N 191 DT C6 C N N 192 DT HOP3 H N N 193 DT HOP2 H N N 194 DT "H5'" H N N 195 DT "H5''" H N N 196 DT "H4'" H N N 197 DT "H3'" H N N 198 DT "HO3'" H N N 199 DT "H2'" H N N 200 DT "H2''" H N N 201 DT "H1'" H N N 202 DT H3 H N N 203 DT H71 H N N 204 DT H72 H N N 205 DT H73 H N N 206 DT H6 H N N 207 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1EOB C21 C19 sing N N 1 A1EOB C19 N5 doub Y N 2 A1EOB C19 C20 sing Y N 3 A1EOB N5 C18 sing Y N 4 A1EOB C20 N4 doub Y N 5 A1EOB C18 C17 doub Y N 6 A1EOB N4 C17 sing Y N 7 A1EOB C17 C16 sing N N 8 A1EOB C16 N3 sing N N 9 A1EOB N3 C15 sing N N 10 A1EOB O1 C9 doub N N 11 A1EOB C15 O2 doub N N 12 A1EOB C15 C8 sing N N 13 A1EOB C9 C8 sing N N 14 A1EOB C9 C10 sing N N 15 A1EOB C11 C10 sing Y N 16 A1EOB C11 C12 doub Y N 17 A1EOB C8 C7 doub N N 18 A1EOB C10 C14 doub Y N 19 A1EOB C12 C13 sing Y N 20 A1EOB C7 S1 sing N N 21 A1EOB C7 N1 sing N N 22 A1EOB C14 N1 sing N N 23 A1EOB C14 N2 sing Y N 24 A1EOB C13 N2 doub Y N 25 A1EOB C13 N6 sing N N 26 A1EOB S1 C4 sing N N 27 A1EOB N1 C5 sing N N 28 A1EOB C26 N6 sing N N 29 A1EOB C26 C25 sing N N 30 A1EOB N6 C22 sing N N 31 A1EOB C5 C4 doub Y N 32 A1EOB C5 C6 sing Y N 33 A1EOB C4 C3 sing Y N 34 A1EOB C25 C24 sing N N 35 A1EOB C6 C1 doub Y N 36 A1EOB C3 C2 doub Y N 37 A1EOB C22 C23 sing N N 38 A1EOB C1 C2 sing Y N 39 A1EOB C23 N7 sing N N 40 A1EOB C24 N7 sing N N 41 A1EOB N7 C27 sing N N 42 A1EOB C21 H13 sing N N 43 A1EOB C21 H14 sing N N 44 A1EOB C21 H12 sing N N 45 A1EOB C18 H11 sing N N 46 A1EOB C20 H10 sing N N 47 A1EOB C16 H9 sing N N 48 A1EOB C16 H8 sing N N 49 A1EOB N3 H7 sing N N 50 A1EOB C11 H6 sing N N 51 A1EOB C12 H5 sing N N 52 A1EOB C6 H4 sing N N 53 A1EOB C1 H1 sing N N 54 A1EOB C2 H2 sing N N 55 A1EOB C3 H3 sing N N 56 A1EOB C26 H24 sing N N 57 A1EOB C26 H23 sing N N 58 A1EOB C25 H21 sing N N 59 A1EOB C25 H22 sing N N 60 A1EOB C24 H19 sing N N 61 A1EOB C24 H20 sing N N 62 A1EOB C27 H25 sing N N 63 A1EOB C27 H26 sing N N 64 A1EOB C27 H27 sing N N 65 A1EOB C23 H18 sing N N 66 A1EOB C23 H17 sing N N 67 A1EOB C22 H15 sing N N 68 A1EOB C22 H16 sing N N 69 DA OP3 P sing N N 70 DA OP3 HOP3 sing N N 71 DA P OP1 doub N N 72 DA P OP2 sing N N 73 DA P "O5'" sing N N 74 DA OP2 HOP2 sing N N 75 DA "O5'" "C5'" sing N N 76 DA "C5'" "C4'" sing N N 77 DA "C5'" "H5'" sing N N 78 DA "C5'" "H5''" sing N N 79 DA "C4'" "O4'" sing N N 80 DA "C4'" "C3'" sing N N 81 DA "C4'" "H4'" sing N N 82 DA "O4'" "C1'" sing N N 83 DA "C3'" "O3'" sing N N 84 DA "C3'" "C2'" sing N N 85 DA "C3'" "H3'" sing N N 86 DA "O3'" "HO3'" sing N N 87 DA "C2'" "C1'" sing N N 88 DA "C2'" "H2'" sing N N 89 DA "C2'" "H2''" sing N N 90 DA "C1'" N9 sing N N 91 DA "C1'" "H1'" sing N N 92 DA N9 C8 sing Y N 93 DA N9 C4 sing Y N 94 DA C8 N7 doub Y N 95 DA C8 H8 sing N N 96 DA N7 C5 sing Y N 97 DA C5 C6 sing Y N 98 DA C5 C4 doub Y N 99 DA C6 N6 sing N N 100 DA C6 N1 doub Y N 101 DA N6 H61 sing N N 102 DA N6 H62 sing N N 103 DA N1 C2 sing Y N 104 DA C2 N3 doub Y N 105 DA C2 H2 sing N N 106 DA N3 C4 sing Y N 107 DC OP3 P sing N N 108 DC OP3 HOP3 sing N N 109 DC P OP1 doub N N 110 DC P OP2 sing N N 111 DC P "O5'" sing N N 112 DC OP2 HOP2 sing N N 113 DC "O5'" "C5'" sing N N 114 DC "C5'" "C4'" sing N N 115 DC "C5'" "H5'" sing N N 116 DC "C5'" "H5''" sing N N 117 DC "C4'" "O4'" sing N N 118 DC "C4'" "C3'" sing N N 119 DC "C4'" "H4'" sing N N 120 DC "O4'" "C1'" sing N N 121 DC "C3'" "O3'" sing N N 122 DC "C3'" "C2'" sing N N 123 DC "C3'" "H3'" sing N N 124 DC "O3'" "HO3'" sing N N 125 DC "C2'" "C1'" sing N N 126 DC "C2'" "H2'" sing N N 127 DC "C2'" "H2''" sing N N 128 DC "C1'" N1 sing N N 129 DC "C1'" "H1'" sing N N 130 DC N1 C2 sing N N 131 DC N1 C6 sing N N 132 DC C2 O2 doub N N 133 DC C2 N3 sing N N 134 DC N3 C4 doub N N 135 DC C4 N4 sing N N 136 DC C4 C5 sing N N 137 DC N4 H41 sing N N 138 DC N4 H42 sing N N 139 DC C5 C6 doub N N 140 DC C5 H5 sing N N 141 DC C6 H6 sing N N 142 DG OP3 P sing N N 143 DG OP3 HOP3 sing N N 144 DG P OP1 doub N N 145 DG P OP2 sing N N 146 DG P "O5'" sing N N 147 DG OP2 HOP2 sing N N 148 DG "O5'" "C5'" sing N N 149 DG "C5'" "C4'" sing N N 150 DG "C5'" "H5'" sing N N 151 DG "C5'" "H5''" sing N N 152 DG "C4'" "O4'" sing N N 153 DG "C4'" "C3'" sing N N 154 DG "C4'" "H4'" sing N N 155 DG "O4'" "C1'" sing N N 156 DG "C3'" "O3'" sing N N 157 DG "C3'" "C2'" sing N N 158 DG "C3'" "H3'" sing N N 159 DG "O3'" "HO3'" sing N N 160 DG "C2'" "C1'" sing N N 161 DG "C2'" "H2'" sing N N 162 DG "C2'" "H2''" sing N N 163 DG "C1'" N9 sing N N 164 DG "C1'" "H1'" sing N N 165 DG N9 C8 sing Y N 166 DG N9 C4 sing Y N 167 DG C8 N7 doub Y N 168 DG C8 H8 sing N N 169 DG N7 C5 sing Y N 170 DG C5 C6 sing N N 171 DG C5 C4 doub Y N 172 DG C6 O6 doub N N 173 DG C6 N1 sing N N 174 DG N1 C2 sing N N 175 DG N1 H1 sing N N 176 DG C2 N2 sing N N 177 DG C2 N3 doub N N 178 DG N2 H21 sing N N 179 DG N2 H22 sing N N 180 DG N3 C4 sing N N 181 DT OP3 P sing N N 182 DT OP3 HOP3 sing N N 183 DT P OP1 doub N N 184 DT P OP2 sing N N 185 DT P "O5'" sing N N 186 DT OP2 HOP2 sing N N 187 DT "O5'" "C5'" sing N N 188 DT "C5'" "C4'" sing N N 189 DT "C5'" "H5'" sing N N 190 DT "C5'" "H5''" sing N N 191 DT "C4'" "O4'" sing N N 192 DT "C4'" "C3'" sing N N 193 DT "C4'" "H4'" sing N N 194 DT "O4'" "C1'" sing N N 195 DT "C3'" "O3'" sing N N 196 DT "C3'" "C2'" sing N N 197 DT "C3'" "H3'" sing N N 198 DT "O3'" "HO3'" sing N N 199 DT "C2'" "C1'" sing N N 200 DT "C2'" "H2'" sing N N 201 DT "C2'" "H2''" sing N N 202 DT "C1'" N1 sing N N 203 DT "C1'" "H1'" sing N N 204 DT N1 C2 sing N N 205 DT N1 C6 sing N N 206 DT C2 O2 doub N N 207 DT C2 N3 sing N N 208 DT N3 C4 sing N N 209 DT N3 H3 sing N N 210 DT C4 O4 doub N N 211 DT C4 C5 sing N N 212 DT C5 C7 sing N N 213 DT C5 C6 doub N N 214 DT C7 H71 sing N N 215 DT C7 H72 sing N N 216 DT C7 H73 sing N N 217 DT C6 H6 sing N N 218 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 26JT 'double helix' 26JT 'a-form double helix' 26JT 'hairpin loop' 26JT 'quadruple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DA 1 1_555 A DT 22 1_555 3.955 -4.753 -0.094 0.784 -2.627 126.816 1 A_DA1:DT22_A A 1 ? A 22 ? 23 3 1 A DG 27 1_555 A DG 23 1_555 0.397 3.932 -0.020 -0.781 -0.409 -89.586 2 A_DG27:DG23_A A 27 ? A 23 ? 6 3 1 A DG 28 1_555 A DG 3 1_555 0.217 3.917 -0.030 -1.047 1.742 -90.451 3 A_DG28:DG3_A A 28 ? A 3 ? 6 3 1 A DA 5 1_555 A DT 17 1_555 0.761 -0.039 -0.044 -0.987 0.278 -1.363 4 A_DA5:DT17_A A 5 ? A 17 ? 20 1 1 A DG 6 1_555 A DC 16 1_555 0.050 -0.034 -0.012 -0.404 -4.167 -1.160 5 A_DG6:DC16_A A 6 ? A 16 ? 19 1 1 A DA 7 1_555 A DT 15 1_555 0.464 -0.048 0.021 3.747 -5.522 6.437 6 A_DA7:DT15_A A 7 ? A 15 ? 20 1 1 A DG 8 1_555 A DG 11 1_555 -6.793 -6.592 -1.541 -20.263 -4.518 -62.011 7 A_DG8:DG11_A A 8 ? A 11 ? ? ? 1 A DG 25 1_555 A DG 29 1_555 2.822 2.401 -0.025 0.815 -0.539 -81.433 8 A_DG25:DG29_A A 25 ? A 29 ? 6 3 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DA 1 1_555 A DT 22 1_555 A DG 27 1_555 A DG 23 1_555 2.091 3.432 3.704 90.388 -137.181 -157.793 -1.408 1.249 3.963 68.712 45.274 -176.982 1 AA_DA1DG27:DG23DT22_AA A 1 ? A 22 ? A 27 ? A 23 ? 1 A DG 27 1_555 A DG 23 1_555 A DG 28 1_555 A DG 3 1_555 3.835 0.339 3.217 50.496 167.173 -41.862 -1.168 2.221 -0.188 -85.237 25.746 -174.988 2 AA_DG27DG28:DG3DG23_AA A 27 ? A 23 ? A 28 ? A 3 ? 1 A DA 5 1_555 A DT 17 1_555 A DG 6 1_555 A DC 16 1_555 -0.081 -1.481 4.065 -0.528 0.288 21.541 -4.104 -0.045 4.046 0.769 1.413 21.549 3 AA_DA5DG6:DC16DT17_AA A 5 ? A 17 ? A 6 ? A 16 ? 1 A DG 6 1_555 A DC 16 1_555 A DA 7 1_555 A DT 15 1_555 0.492 -1.048 3.547 -0.822 8.247 27.677 -4.008 -1.176 3.096 16.769 1.671 28.868 4 AA_DG6DA7:DT15DC16_AA A 6 ? A 16 ? A 7 ? A 15 ? 1 A DA 7 1_555 A DT 15 1_555 A DG 8 1_555 A DG 11 1_555 0.241 3.425 6.640 -11.500 -61.161 82.395 4.103 -0.508 3.985 -41.772 7.854 99.791 5 AA_DA7DG8:DG11DT15_AA A 7 ? A 15 ? A 8 ? A 11 ? # _pdbx_audit_support.funding_organization 'National Natural Science Foundation of China (NSFC)' _pdbx_audit_support.country China _pdbx_audit_support.grant_number XDB1060000 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.details 1 AVANCE ? Bruker 900 ? 2 'Direct Drive' ? Agilent 800 ? # _atom_sites.entry_id 26JT _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O P S # loop_ #