HEADER FLAVOPROTEIN 06-MAY-26 26LM TITLE CRYSTAL STRUCTURE OF CBLB COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE CBL-B; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CASITAS B-LINEAGE LYMPHOMA PROTO-ONCOGENE B,RING FINGER COMPND 5 PROTEIN 56,RING-TYPE E3 UBIQUITIN TRANSFERASE CBL-B,SH3-BINDING COMPND 6 PROTEIN CBL-B,SIGNAL TRANSDUCTION PROTEIN CBL-B; COMPND 7 EC: 2.3.2.27; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CBLB, RNF56, NBLA00127; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LSD1, FLAVOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.ZHIYAN,C.DANYAN,S.LINGYU,X.BING REVDAT 1 17-JUN-26 26LM 0 JRNL AUTH S.LINGYU,C.DANYAN,X.BING,Z.YUBO JRNL TITL PHAGE DISPLAY-DERIVED CYCLIC PEPTIDES TARGETING THE TKB JRNL TITL 2 DOMAIN OF CBLB WITH T CELL IMMUNOSTIMULATORY ACTIVITY JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.19.2_4158: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.42 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 77285 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.840 REMARK 3 FREE R VALUE TEST SET COUNT : 3742 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 50.4200 - 5.8500 1.00 2725 145 0.1953 0.2043 REMARK 3 2 5.8500 - 4.6400 1.00 2713 142 0.1910 0.1972 REMARK 3 3 4.6400 - 4.0600 1.00 2717 134 0.1735 0.1530 REMARK 3 4 4.0600 - 3.6900 1.00 2748 138 0.1853 0.1987 REMARK 3 5 3.6900 - 3.4200 1.00 2691 134 0.2028 0.2683 REMARK 3 6 3.4200 - 3.2200 1.00 2758 139 0.2126 0.2802 REMARK 3 7 3.2200 - 3.0600 1.00 2727 139 0.2280 0.2813 REMARK 3 8 3.0600 - 2.9300 1.00 2730 134 0.2309 0.3047 REMARK 3 9 2.9300 - 2.8100 1.00 2729 139 0.2332 0.2334 REMARK 3 10 2.8100 - 2.7200 1.00 2724 143 0.2346 0.2643 REMARK 3 11 2.7200 - 2.6300 1.00 2703 136 0.2351 0.2923 REMARK 3 12 2.6300 - 2.5600 1.00 2702 135 0.2317 0.2501 REMARK 3 13 2.5600 - 2.4900 1.00 2736 140 0.2268 0.2505 REMARK 3 14 2.4900 - 2.4300 1.00 2736 140 0.2201 0.2692 REMARK 3 15 2.4300 - 2.3700 1.00 2719 140 0.2166 0.2571 REMARK 3 16 2.3700 - 2.3200 1.00 2724 142 0.2186 0.2796 REMARK 3 17 2.3200 - 2.2800 1.00 2739 136 0.2267 0.3089 REMARK 3 18 2.2800 - 2.2300 1.00 2716 134 0.2348 0.2555 REMARK 3 19 2.2300 - 2.1900 1.00 2718 140 0.2343 0.2758 REMARK 3 20 2.1900 - 2.1600 1.00 2755 141 0.2381 0.3047 REMARK 3 21 2.1600 - 2.1200 1.00 2690 135 0.2400 0.3024 REMARK 3 22 2.1200 - 2.0900 1.00 2746 142 0.2449 0.2765 REMARK 3 23 2.0900 - 2.0600 1.00 2689 142 0.2471 0.2844 REMARK 3 24 2.0600 - 2.0300 1.00 2740 139 0.2540 0.2913 REMARK 3 25 2.0300 - 2.0000 1.00 2707 139 0.2705 0.2863 REMARK 3 26 2.0000 - 1.9800 1.00 2765 137 0.2794 0.3157 REMARK 3 27 1.9800 - 1.9500 1.00 2696 137 0.2951 0.3046 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.490 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3246 REMARK 3 ANGLE : 1.168 4402 REMARK 3 CHIRALITY : 0.063 479 REMARK 3 PLANARITY : 0.013 566 REMARK 3 DIHEDRAL : 6.447 431 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 26LM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 09-MAY-26. REMARK 100 THE DEPOSITION ID IS D_1300073674. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUL-23 REMARK 200 TEMPERATURE (KELVIN) : 273 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL02U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979183 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 S 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 77285 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.810 REMARK 200 RESOLUTION RANGE LOW (A) : 50.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 200 DATA REDUNDANCY : 20.00 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.81 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 15.00 REMARK 200 R MERGE FOR SHELL (I) : 0.08400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CHLORIDE, 0.1 M BICINE PH REMARK 280 9.0, -20% V/V POLYETHYLENE GLYCOL MONOMETHYLETHER 550, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 106.15550 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 35.92000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 35.92000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 53.07775 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 35.92000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 35.92000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 159.23325 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 35.92000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 35.92000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 53.07775 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 35.92000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 35.92000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 159.23325 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 106.15550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 35 REMARK 465 PRO A 36 REMARK 465 SER A 368 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 44 CD NE CZ NH1 NH2 REMARK 470 LYS A 48 CE NZ REMARK 470 LYS A 64 CE NZ REMARK 470 LYS A 68 CG CD CE NZ REMARK 470 ASN A 69 CG OD1 ND2 REMARK 470 SER A 70 OG REMARK 470 TYR A 73 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN A 100 CG CD OE1 NE2 REMARK 470 GLU A 103 CG CD OE1 OE2 REMARK 470 GLU A 105 CD OE1 OE2 REMARK 470 LYS A 108 CE NZ REMARK 470 LYS A 126 CE NZ REMARK 470 LYS A 129 CD CE NZ REMARK 470 GLU A 135 CG CD OE1 OE2 REMARK 470 GLN A 136 CG CD OE1 NE2 REMARK 470 ARG A 172 CZ NH1 NH2 REMARK 470 LYS A 184 CE NZ REMARK 470 GLU A 203 CG CD OE1 OE2 REMARK 470 LYS A 275 CE NZ REMARK 470 HIS A 312 CG ND1 CD2 CE1 NE2 REMARK 470 ASN A 313 CG OD1 ND2 REMARK 470 LYS A 354 CG CD CE NZ REMARK 470 LYS A 374 CD CE NZ REMARK 470 GLU A 378 CD OE1 OE2 REMARK 470 SER A 403 OG REMARK 470 GLN A 406 CG CD OE1 NE2 REMARK 470 ARG A 412 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 180 O HOH A 501 2.14 REMARK 500 O HOH A 549 O HOH A 651 2.14 REMARK 500 O HOH A 646 O HOH A 673 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 597 O HOH A 656 6454 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 408 CB CYS A 408 SG 0.127 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE A 353 CG1 - CB - CG2 ANGL. DEV. = -14.4 DEGREES REMARK 500 CYS A 408 CA - CB - SG ANGL. DEV. = 9.6 DEGREES REMARK 500 PRO A 425 C - N - CD ANGL. DEV. = -28.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 38 127.00 65.16 REMARK 500 ASN A 69 34.13 -79.12 REMARK 500 LYS A 129 -119.56 45.54 REMARK 500 PHE A 161 60.86 -116.73 REMARK 500 ALA A 262 -141.14 53.61 REMARK 500 ASN A 313 -58.23 70.29 REMARK 500 HIS A 352 93.42 -45.51 REMARK 500 LYS A 354 -69.31 -18.84 REMARK 500 THR A 356 24.61 -175.09 REMARK 500 GLU A 358 11.74 48.51 REMARK 500 PHE A 370 -166.02 -167.01 REMARK 500 ILE A 375 -67.46 -96.61 REMARK 500 ASP A 382 3.90 -153.63 REMARK 500 MET A 392 164.10 171.14 REMARK 500 SER A 403 29.54 -79.78 REMARK 500 ARG A 412 14.10 55.58 REMARK 500 PRO A 425 178.09 0.00 REMARK 500 PHE A 426 -8.22 55.88 REMARK 500 LEU A 430 -48.17 161.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 354 VAL A 355 149.16 REMARK 500 ASP A 424 PRO A 425 -130.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 680 DISTANCE = 6.10 ANGSTROMS DBREF 26LM A 36 427 UNP Q13191 CBLB_HUMAN 36 427 SEQADV 26LM MET A 35 UNP Q13191 INITIATING METHIONINE SEQADV 26LM PHE A 363 UNP Q13191 TYR 363 CONFLICT SEQADV 26LM GLU A 428 UNP Q13191 EXPRESSION TAG SEQADV 26LM ASN A 429 UNP Q13191 EXPRESSION TAG SEQADV 26LM LEU A 430 UNP Q13191 EXPRESSION TAG SEQADV 26LM TYR A 431 UNP Q13191 EXPRESSION TAG SEQADV 26LM PHE A 432 UNP Q13191 EXPRESSION TAG SEQADV 26LM GLN A 433 UNP Q13191 EXPRESSION TAG SEQRES 1 A 399 MET PRO LYS GLN ALA ALA ALA ASP ARG ARG THR VAL GLU SEQRES 2 A 399 LYS THR TRP LYS LEU MET ASP LYS VAL VAL ARG LEU CYS SEQRES 3 A 399 GLN ASN PRO LYS LEU GLN LEU LYS ASN SER PRO PRO TYR SEQRES 4 A 399 ILE LEU ASP ILE LEU PRO ASP THR TYR GLN HIS LEU ARG SEQRES 5 A 399 LEU ILE LEU SER LYS TYR ASP ASP ASN GLN LYS LEU ALA SEQRES 6 A 399 GLN LEU SER GLU ASN GLU TYR PHE LYS ILE TYR ILE ASP SEQRES 7 A 399 SER LEU MET LYS LYS SER LYS ARG ALA ILE ARG LEU PHE SEQRES 8 A 399 LYS GLU GLY LYS GLU ARG MET TYR GLU GLU GLN SER GLN SEQRES 9 A 399 ASP ARG ARG ASN LEU THR LYS LEU SER LEU ILE PHE SER SEQRES 10 A 399 HIS MET LEU ALA GLU ILE LYS ALA ILE PHE PRO ASN GLY SEQRES 11 A 399 GLN PHE GLN GLY ASP ASN PHE ARG ILE THR LYS ALA ASP SEQRES 12 A 399 ALA ALA GLU PHE TRP ARG LYS PHE PHE GLY ASP LYS THR SEQRES 13 A 399 ILE VAL PRO TRP LYS VAL PHE ARG GLN CYS LEU HIS GLU SEQRES 14 A 399 VAL HIS GLN ILE SER SER GLY LEU GLU ALA MET ALA LEU SEQRES 15 A 399 LYS SER THR ILE ASP LEU THR CYS ASN ASP TYR ILE SER SEQRES 16 A 399 VAL PHE GLU PHE ASP ILE PHE THR ARG LEU PHE GLN PRO SEQRES 17 A 399 TRP GLY SER ILE LEU ARG ASN TRP ASN PHE LEU ALA VAL SEQRES 18 A 399 THR HIS PRO GLY TYR MET ALA PHE LEU THR TYR ASP GLU SEQRES 19 A 399 VAL LYS ALA ARG LEU GLN LYS TYR SER THR LYS PRO GLY SEQRES 20 A 399 SER TYR ILE PHE ARG LEU SER CYS THR ARG LEU GLY GLN SEQRES 21 A 399 TRP ALA ILE GLY TYR VAL THR GLY ASP GLY ASN ILE LEU SEQRES 22 A 399 GLN THR ILE PRO HIS ASN LYS PRO LEU PHE GLN ALA LEU SEQRES 23 A 399 ILE ASP GLY SER ARG GLU GLY PHE TYR LEU TYR PRO ASP SEQRES 24 A 399 GLY ARG SER TYR ASN PRO ASP LEU THR GLY LEU CYS GLU SEQRES 25 A 399 PRO THR PRO HIS ASP HIS ILE LYS VAL THR GLN GLU GLN SEQRES 26 A 399 TYR GLU LEU PHE CYS GLU MET GLY SER THR PHE GLN LEU SEQRES 27 A 399 CYS LYS ILE CYS ALA GLU ASN ASP LYS ASP VAL LYS ILE SEQRES 28 A 399 GLU PRO CYS GLY HIS LEU MET CYS THR SER CYS LEU THR SEQRES 29 A 399 ALA TRP GLN GLU SER ASP GLY GLN GLY CYS PRO PHE CYS SEQRES 30 A 399 ARG CYS GLU ILE LYS GLY THR GLU PRO ILE ILE VAL ASP SEQRES 31 A 399 PRO PHE ASP GLU ASN LEU TYR PHE GLN FORMUL 2 HOH *180(H2 O) HELIX 1 AA1 ASP A 42 GLN A 61 1 20 HELIX 2 AA2 ASN A 62 GLN A 66 5 5 HELIX 3 AA3 TYR A 73 TYR A 92 1 20 HELIX 4 AA4 ASP A 94 ASN A 104 1 11 HELIX 5 AA5 ASN A 104 LYS A 129 1 26 HELIX 6 AA6 GLU A 130 GLU A 134 5 5 HELIX 7 AA7 SER A 137 PHE A 161 1 25 HELIX 8 AA8 PRO A 162 GLN A 165 5 4 HELIX 9 AA9 GLN A 167 PHE A 171 5 5 HELIX 10 AB1 LYS A 175 GLY A 187 1 13 HELIX 11 AB2 TRP A 194 HIS A 205 1 12 HELIX 12 AB3 SER A 209 ASP A 221 1 13 HELIX 13 AB4 VAL A 230 PHE A 240 1 11 HELIX 14 AB5 PRO A 242 GLY A 244 5 3 HELIX 15 AB6 SER A 245 ALA A 254 1 10 HELIX 16 AB7 THR A 265 LYS A 275 1 11 HELIX 17 AB8 PRO A 315 GLU A 326 1 12 HELIX 18 AB9 GLU A 358 PHE A 363 1 6 HELIX 19 AC1 CYS A 393 SER A 403 1 11 HELIX 20 AC2 ASP A 427 PHE A 432 1 6 SHEET 1 AA1 2 ILE A 191 PRO A 193 0 SHEET 2 AA1 2 TYR A 227 SER A 229 -1 O ILE A 228 N VAL A 192 SHEET 1 AA2 4 TYR A 260 PHE A 263 0 SHEET 2 AA2 4 SER A 282 LEU A 287 1 O LEU A 287 N ALA A 262 SHEET 3 AA2 4 TRP A 295 VAL A 300 -1 O GLY A 298 N ILE A 284 SHEET 4 AA2 4 ILE A 306 THR A 309 -1 O THR A 309 N ILE A 297 SHEET 1 AA3 3 TYR A 260 PHE A 263 0 SHEET 2 AA3 3 SER A 282 LEU A 287 1 O LEU A 287 N ALA A 262 SHEET 3 AA3 3 TYR A 331 PRO A 332 1 O TYR A 331 N TYR A 283 SHEET 1 AA4 3 LEU A 391 MET A 392 0 SHEET 2 AA4 3 VAL A 383 GLU A 386 -1 N VAL A 383 O MET A 392 SHEET 3 AA4 3 GLY A 417 PRO A 420 -1 O GLY A 417 N GLU A 386 CISPEP 1 PRO A 71 PRO A 72 0 3.55 CISPEP 2 GLN A 241 PRO A 242 0 2.88 CISPEP 3 GLU A 386 PRO A 387 0 -3.35 CRYST1 71.840 71.840 212.311 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013920 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013920 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004710 0.00000 MASTER 406 0 0 20 12 0 0 6 3332 1 0 31 END