HEADER IMMUNE SYSTEM 01-MAY-26 26JD TITLE CRYO-EM TERNARY STRUCTURE OF CD1C PRESENTING A MYCOBACTERIAL LIPID TO TITLE 2 A T CELL RECEPTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: T-CELL SURFACE GLYCOPROTEIN CD1C; COMPND 3 CHAIN: C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: MPM7 T CELL RECEPTOR BETA CHAIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: MPM7 T CELL RECEPTOR ALPHA CHAIN; COMPND 11 CHAIN: A; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 4; COMPND 14 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 15 CHAIN: D; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CD1C; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: GNTI(-); SOURCE 9 EXPRESSION_SYSTEM_ORGAN: KIDNEY; SOURCE 10 EXPRESSION_SYSTEM_TISSUE: EMBRYO; SOURCE 11 EXPRESSION_SYSTEM_CELL: HEK293S; SOURCE 12 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 13 EXPRESSION_SYSTEM_PLASMID: PHLSEC; SOURCE 14 MOL_ID: 2; SOURCE 15 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 16 ORGANISM_TAXID: 9606; SOURCE 17 GENE: TRBV7-9, TRBJ1-2; SOURCE 18 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 20 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 21 EXPRESSION_SYSTEM_PLASMID: PET30A; SOURCE 22 MOL_ID: 3; SOURCE 23 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 24 ORGANISM_TAXID: 9606; SOURCE 25 GENE: TRAV6; TRAJ24; SOURCE 26 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 27 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 28 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 29 EXPRESSION_SYSTEM_PLASMID: PET30A; SOURCE 30 MOL_ID: 4; SOURCE 31 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 32 ORGANISM_COMMON: HUMAN; SOURCE 33 ORGANISM_TAXID: 9606; SOURCE 34 GENE: B2M, CDABP0092, HDCMA22P; SOURCE 35 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 36 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 37 EXPRESSION_SYSTEM_CELL_LINE: GNTI(-); SOURCE 38 EXPRESSION_SYSTEM_ORGAN: KIDNEY; SOURCE 39 EXPRESSION_SYSTEM_TISSUE: EMBRYO; SOURCE 40 EXPRESSION_SYSTEM_CELL: HEK293S; SOURCE 41 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 42 EXPRESSION_SYSTEM_PLASMID: PHLSEC KEYWDS CD1C, LIPID-ANTIGEN PRESENTATION, T CELL RECEPTOR, MYCOBACTERIAL KEYWDS 2 LIPID, IMMUNE SYSTEM EXPDTA ELECTRON MICROSCOPY AUTHOR T.P.CAO,A.SHAHINE,J.ROSSJOHN REVDAT 1 04-NOV-26 26JD 0 JRNL AUTH T.P.CAO,A.SHAHINE,J.ROSSJOHN JRNL TITL CRYO-EM TERNARY STRUCTURE OF CD1C PRESENTING A MYCOBACTERIAL JRNL TITL 2 LIPID TO A T CELL RECEPTOR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOSPARC, TOPAZ, CRYOSPARC, PHENIX, REMARK 3 CRYOSPARC, CRYOSPARC, CRYOSPARC, REMARK 3 CRYOSPARC, PHENIX, SERVALCAT REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 6C15 REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : RIGID BODY FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.900 REMARK 3 NUMBER OF PARTICLES : 130855 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 26JD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-MAY-26. REMARK 100 THE DEPOSITION ID IS D_1300071585. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : TERNARY COMPLEX OF CD1C REMARK 245 PRESENTING MYCOBACTERIAL REMARK 245 PHOSPHOMYCOKETIDE LIPID TO THE REMARK 245 MPM7 ALPHA-BETA T CELL RECEPTOR; REMARK 245 CD1C AND BETA-2-MICROGLOBULIN REMARK 245 HETERODIMER; MPM7 ALPHA-BETA T REMARK 245 CELL RECEPTOR REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 2.00 REMARK 245 SAMPLE SUPPORT DETAILS : 30 MA REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : CD1C PRESENTING THE REMARK 245 MYCOBACTERIAL PHOSPHOMYCOKETIDE (PM) LIPID IN ITS POCKET; A REMARK 245 TRBV7-9 TCR RECOGNISING CD1C-PM REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 10422 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 BIOQUANTUM (6K X REMARK 245 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 500.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 1500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 6000.00 REMARK 245 ILLUMINATION MODE : OTHER REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, B, A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU C 6 REMARK 465 GLY C 107 REMARK 465 LYS C 108 REMARK 465 SER C 197 REMARK 465 LEU C 198 REMARK 465 GLY C 199 REMARK 465 SER C 200 REMARK 465 GLY C 201 REMARK 465 GLN C 202 REMARK 465 ASN C 224 REMARK 465 GLU C 225 REMARK 465 GLN C 226 REMARK 465 GLU C 227 REMARK 465 GLN C 228 REMARK 465 LEU C 229 REMARK 465 GLY C 230 REMARK 465 VAL C 252 REMARK 465 ALA C 253 REMARK 465 SER C 254 REMARK 465 GLU C 255 REMARK 465 GLU C 256 REMARK 465 PRO C 257 REMARK 465 ALA C 258 REMARK 465 GLY C 259 REMARK 465 GLY C 271 REMARK 465 GLN C 272 REMARK 465 GLY C 279 REMARK 465 SER C 280 REMARK 465 ASP B 1 REMARK 465 THR B 2 REMARK 465 ALA B 260 REMARK 465 ASP B 261 REMARK 465 GLN A 2 REMARK 465 LYS A 3 REMARK 465 LYS A 139 REMARK 465 GLN A 154 REMARK 465 GLN A 159 REMARK 465 SER A 160 REMARK 465 LYS A 161 REMARK 465 ASP A 162 REMARK 465 SER A 163 REMARK 465 SER A 192 REMARK 465 ASP A 193 REMARK 465 PHE A 194 REMARK 465 ALA A 195 REMARK 465 ASN A 201 REMARK 465 ASN A 202 REMARK 465 SER A 203 REMARK 465 ILE A 204 REMARK 465 ILE A 205 REMARK 465 PRO A 206 REMARK 465 GLU A 207 REMARK 465 ASP A 208 REMARK 465 THR A 209 REMARK 465 PHE A 210 REMARK 465 PHE A 211 REMARK 465 PRO A 212 REMARK 465 SER A 213 REMARK 465 PRO A 214 REMARK 465 GLU A 215 REMARK 465 SER A 216 REMARK 465 SER A 217 REMARK 465 LYS D 85 REMARK 465 ASP D 108 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL C 8 CG1 CG2 REMARK 470 SER C 17 OG REMARK 470 SER C 109 OG REMARK 470 LEU C 203 CG CD1 CD2 REMARK 470 LEU C 204 CG CD1 CD2 REMARK 470 MET C 222 CG SD CE REMARK 470 ARG C 223 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 232 CG CD CE NZ REMARK 470 LEU C 250 CG CD1 CD2 REMARK 470 GLU C 251 CG CD OE1 OE2 REMARK 470 LEU C 260 CG CD1 CD2 REMARK 470 ASP C 273 CG OD1 OD2 REMARK 470 ILE C 274 CG1 CG2 CD1 REMARK 470 ILE C 275 CG1 CG2 CD1 REMARK 470 TYR C 277 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 TRP C 278 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP C 278 CZ3 CH2 REMARK 470 GLN B 156 CG CD OE1 NE2 REMARK 470 ASN B 201 CG OD1 ND2 REMARK 470 SER B 203 OG REMARK 470 THR B 216 OG1 CG2 REMARK 470 GLN B 219 CG CD OE1 NE2 REMARK 470 ASN B 220 CG OD1 ND2 REMARK 470 ARG B 222 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 126 CG CD OE1 NE2 REMARK 470 ASN A 127 CG OD1 ND2 REMARK 470 ASP A 137 CG OD1 OD2 REMARK 470 SER A 138 OG REMARK 470 ASP A 152 CG OD1 OD2 REMARK 470 SER A 177 OG REMARK 470 MET A 178 CG SD CE REMARK 470 ASP A 179 CG OD1 OD2 REMARK 470 LYS A 191 CG CD CE NZ REMARK 470 ASN A 198 CG OD1 ND2 REMARK 470 LYS D 29 CG CD CE NZ REMARK 470 SER D 38 OG REMARK 470 LYS D 51 CG CD CE NZ REMARK 470 GLU D 54 CG CD OE1 OE2 REMARK 470 ARG D 55 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 57 CG CD OE1 OE2 REMARK 470 LYS D 58 CG CD CE NZ REMARK 470 GLU D 79 CG CD OE1 OE2 REMARK 470 LYS D 104 CG CD CE NZ REMARK 470 ARG D 107 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP C 40 118.54 -160.61 REMARK 500 LYS C 91 57.39 -95.92 REMARK 500 LEU C 104 76.79 -102.75 REMARK 500 THR C 129 14.47 51.81 REMARK 500 PRO C 214 -167.70 -76.86 REMARK 500 VAL C 219 76.31 53.05 REMARK 500 ALA C 240 -1.80 70.72 REMARK 500 PRO B 25 -177.41 -69.79 REMARK 500 LEU B 46 -130.16 51.10 REMARK 500 GLU B 63 12.20 56.04 REMARK 500 SER B 73 -155.77 56.70 REMARK 500 ARG B 75 15.77 49.47 REMARK 500 PHE B 86 70.12 61.05 REMARK 500 VAL B 110 -87.86 35.42 REMARK 500 VAL B 110 -88.22 35.42 REMARK 500 PHE B 225 41.56 -108.07 REMARK 500 THR A 26 -63.51 -95.25 REMARK 500 GLU A 74 -141.26 50.83 REMARK 500 ASP A 137 -171.94 -170.94 REMARK 500 MET A 178 -136.62 52.62 REMARK 500 PHE A 180 55.58 33.83 REMARK 500 PRO D 24 174.05 -59.17 REMARK 500 ASN D 52 60.31 60.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS D 41 PRO D 42 129.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 70 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-80696 RELATED DB: EMDB REMARK 900 CRYO-EM TERNARY STRUCTURE OF CD1C PRESENTING A MYCOBACTERIAL LIPID REMARK 900 TO A T CELL RECEPTOR DBREF 26JD C 6 279 UNP P29017 CD1C_HUMAN 24 297 DBREF 26JD B 1 261 PDB 26JD 26JD 1 261 DBREF 26JD A 2 217 PDB 26JD 26JD 2 217 DBREF 26JD D 11 108 UNP P61769 B2MG_HUMAN 21 118 SEQADV 26JD SER C 280 UNP P29017 EXPRESSION TAG SEQRES 1 C 275 GLU HIS VAL SER PHE HIS VAL ILE GLN ILE PHE SER PHE SEQRES 2 C 275 VAL ASN GLN SER TRP ALA ARG GLY GLN GLY SER GLY TRP SEQRES 3 C 275 LEU ASP GLU LEU GLN THR HIS GLY TRP ASP SER GLU SER SEQRES 4 C 275 GLY THR ILE ILE PHE LEU HIS ASN TRP SER LYS GLY ASN SEQRES 5 C 275 PHE SER ASN GLU GLU LEU SER ASP LEU GLU LEU LEU PHE SEQRES 6 C 275 ARG PHE TYR LEU PHE GLY LEU THR ARG GLU ILE GLN ASP SEQRES 7 C 275 HIS ALA SER GLN ASP TYR SER LYS TYR PRO PHE GLU VAL SEQRES 8 C 275 GLN VAL LYS ALA GLY CYS GLU LEU HIS SER GLY LYS SER SEQRES 9 C 275 PRO GLU GLY PHE PHE GLN VAL ALA PHE ASN GLY LEU ASP SEQRES 10 C 275 LEU LEU SER PHE GLN ASN THR THR TRP VAL PRO SER PRO SEQRES 11 C 275 GLY CYS GLY SER LEU ALA GLN SER VAL CYS HIS LEU LEU SEQRES 12 C 275 ASN HIS GLN TYR GLU GLY VAL THR GLU THR VAL TYR ASN SEQRES 13 C 275 LEU ILE ARG SER THR CYS PRO ARG PHE LEU LEU GLY LEU SEQRES 14 C 275 LEU ASP ALA GLY LYS MET TYR VAL HIS ARG GLN VAL ARG SEQRES 15 C 275 PRO GLU ALA TRP LEU SER SER ARG PRO SER LEU GLY SER SEQRES 16 C 275 GLY GLN LEU LEU LEU VAL CYS HIS ALA SER GLY PHE TYR SEQRES 17 C 275 PRO LYS PRO VAL TRP VAL THR TRP MET ARG ASN GLU GLN SEQRES 18 C 275 GLU GLN LEU GLY THR LYS HIS GLY ASP ILE LEU PRO ASN SEQRES 19 C 275 ALA ASP GLY THR TRP TYR LEU GLN VAL ILE LEU GLU VAL SEQRES 20 C 275 ALA SER GLU GLU PRO ALA GLY LEU SER CYS ARG VAL ARG SEQRES 21 C 275 HIS SER SER LEU GLY GLY GLN ASP ILE ILE LEU TYR TRP SEQRES 22 C 275 GLY SER SEQRES 1 B 249 ASP THR GLY VAL SER GLN ASN PRO ARG HIS LYS ILE THR SEQRES 2 B 249 LYS ARG GLY GLN ASN VAL THR PHE ARG CYS ASP PRO ILE SEQRES 3 B 249 SER GLU HIS ASN ARG LEU TYR TRP TYR ARG GLN THR LEU SEQRES 4 B 249 GLY GLN GLY PRO GLU PHE LEU THR TYR PHE GLN ASN GLU SEQRES 5 B 249 ALA GLN LEU GLU LYS SER ARG LEU LEU SER ASP ARG PHE SEQRES 6 B 249 SER ALA GLU ARG PRO LYS GLY SER PHE SER THR LEU GLU SEQRES 7 B 249 ILE GLN ARG THR GLU GLN GLY ASP SER ALA MET TYR LEU SEQRES 8 B 249 CYS ALA SER SER TRP GLY VAL ARG ARG PRO VAL GLY SER SEQRES 9 B 249 VAL TYR GLY TYR THR PHE GLY SER GLY THR ARG LEU THR SEQRES 10 B 249 VAL VAL GLU ASP LEU ASN LYS VAL PHE PRO PRO GLU VAL SEQRES 11 B 249 ALA VAL PHE GLU PRO SER GLU ALA GLU ILE SER HIS THR SEQRES 12 B 249 GLN LYS ALA THR LEU VAL CYS LEU ALA THR GLY PHE TYR SEQRES 13 B 249 PRO ASP HIS VAL GLU LEU SER TRP TRP VAL ASN GLY LYS SEQRES 14 B 249 GLU VAL HIS SER GLY VAL CYS THR ASP PRO GLN PRO LEU SEQRES 15 B 249 LYS GLU GLN PRO ALA LEU ASN ASP SER ARG TYR ALA LEU SEQRES 16 B 249 SER SER ARG LEU ARG VAL SER ALA THR PHE TRP GLN ASN SEQRES 17 B 249 PRO ARG ASN HIS PHE ARG CYS GLN VAL GLN PHE TYR GLY SEQRES 18 B 249 LEU SER GLU ASN ASP GLU TRP THR GLN ASP ARG ALA LYS SEQRES 19 B 249 PRO VAL THR GLN ILE VAL SER ALA GLU ALA TRP GLY ARG SEQRES 20 B 249 ALA ASP SEQRES 1 A 202 GLN LYS ILE GLU GLN ASN SER GLU ALA LEU ASN ILE GLN SEQRES 2 A 202 GLU GLY LYS THR ALA THR LEU THR CYS ASN TYR THR ASN SEQRES 3 A 202 TYR SER PRO ALA TYR LEU GLN TRP TYR ARG GLN ASP PRO SEQRES 4 A 202 GLY ARG GLY PRO VAL PHE LEU LEU LEU ILE ARG GLU ASN SEQRES 5 A 202 GLU LYS GLU LYS ARG LYS GLU ARG LEU LYS VAL THR PHE SEQRES 6 A 202 ASP THR THR LEU LYS GLN SER LEU PHE HIS ILE THR ALA SEQRES 7 A 202 SER GLN PRO ALA ASP SER ALA THR TYR LEU CYS ALA LEU SEQRES 8 A 202 GLY TRP GLY LYS LEU GLN PHE GLY ALA GLY THR GLN VAL SEQRES 9 A 202 VAL VAL THR PRO ASP ILE GLN ASN PRO ASP PRO ALA VAL SEQRES 10 A 202 TYR GLN LEU ARG ASP SER LYS SER SER ASP LYS SER VAL SEQRES 11 A 202 CYS LEU PHE THR ASP PHE ASP SER GLN THR ASN VAL SER SEQRES 12 A 202 GLN SER LYS ASP SER ASP VAL TYR ILE THR ASP LYS CYS SEQRES 13 A 202 VAL LEU ASP MET ARG SER MET ASP PHE LYS SER ASN SER SEQRES 14 A 202 ALA VAL ALA TRP SER ASN LYS SER ASP PHE ALA CYS ALA SEQRES 15 A 202 ASN ALA PHE ASN ASN SER ILE ILE PRO GLU ASP THR PHE SEQRES 16 A 202 PHE PRO SER PRO GLU SER SER SEQRES 1 D 98 ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SER ARG HIS SEQRES 2 D 98 PRO ALA GLU ASN GLY LYS SER ASN PHE LEU ASN CYS TYR SEQRES 3 D 98 VAL SER GLY PHE HIS PRO SER ASP ILE GLU VAL ASP LEU SEQRES 4 D 98 LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL GLU HIS SER SEQRES 5 D 98 ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR LEU LEU SEQRES 6 D 98 TYR TYR THR GLU PHE THR PRO THR GLU LYS ASP GLU TYR SEQRES 7 D 98 ALA CYS ARG VAL ASN HIS VAL THR LEU SER GLN PRO LYS SEQRES 8 D 98 ILE VAL LYS TRP ASP ARG ASP HET NAG C 301 14 HET NAG C 302 14 HET NAG C 303 14 HET Z7B C 304 37 HET 18C C 305 40 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM Z7B (4S,8S,16S,20S)-4,8,12,16,20-PENTAMETHYLHEPTACOSYL HETNAM 2 Z7B DIHYDROGEN PHOSPHATE HETNAM 18C N-((E,2S,3R)-1,3-DIHYDROXYOCTADEC-4-EN-2-YL)STEARAMIDE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN 18C C18-CERAMIDE; N-STEAROYL-D-ERYTHRO-SPHINGOSINE; (2S,3R, HETSYN 2 18C 4E)-2-STEAROYLAMINOOCTADEC-4-ENE-1,3-DIOL; (2S,3R,4E)- HETSYN 3 18C 2-STEAROYLAMINO-1,3-OCTADEC-4-ENEDIOL FORMUL 5 NAG 3(C8 H15 N O6) FORMUL 8 Z7B C32 H67 O4 P FORMUL 9 18C C36 H71 N O3 HELIX 1 AA1 HIS C 51 LYS C 55 5 5 HELIX 2 AA2 SER C 59 GLN C 87 1 29 HELIX 3 AA3 PRO C 135 GLY C 138 5 4 HELIX 4 AA4 LEU C 140 GLN C 151 1 12 HELIX 5 AA5 GLY C 154 SER C 165 1 12 HELIX 6 AA6 SER C 165 HIS C 183 1 19 HELIX 7 AA7 GLU B 95 SER B 99 5 5 HELIX 8 AA8 ASP B 133 VAL B 137 5 5 HELIX 9 AA9 SER B 148 GLN B 156 1 9 HELIX 10 AB1 ALA B 215 ASN B 220 1 6 HELIX 11 AB2 GLN A 95 SER A 99 5 5 SHEET 1 AA1 7 GLN C 36 HIS C 38 0 SHEET 2 AA1 7 TRP C 23 LEU C 32 -1 N GLY C 30 O HIS C 38 SHEET 3 AA1 7 VAL C 8 ASN C 20 -1 N ILE C 13 O SER C 29 SHEET 4 AA1 7 PHE C 94 LEU C 104 -1 O LEU C 104 N VAL C 8 SHEET 5 AA1 7 PRO C 110 PHE C 118 -1 O PHE C 113 N GLY C 101 SHEET 6 AA1 7 LEU C 121 PHE C 126 -1 O LEU C 124 N VAL C 116 SHEET 7 AA1 7 TRP C 131 PRO C 133 -1 O VAL C 132 N SER C 125 SHEET 1 AA2 4 GLU C 189 SER C 194 0 SHEET 2 AA2 4 LEU C 205 PHE C 212 -1 O SER C 210 N GLU C 189 SHEET 3 AA2 4 TRP C 244 LEU C 250 -1 O VAL C 248 N CYS C 207 SHEET 4 AA2 4 LYS C 232 HIS C 233 -1 N LYS C 232 O ILE C 249 SHEET 1 AA3 4 GLU C 189 SER C 194 0 SHEET 2 AA3 4 LEU C 205 PHE C 212 -1 O SER C 210 N GLU C 189 SHEET 3 AA3 4 TRP C 244 LEU C 250 -1 O VAL C 248 N CYS C 207 SHEET 4 AA3 4 LEU C 237 PRO C 238 -1 N LEU C 237 O TYR C 245 SHEET 1 AA4 3 THR C 220 TRP C 221 0 SHEET 2 AA4 3 CYS C 262 ARG C 263 -1 O ARG C 263 N THR C 220 SHEET 3 AA4 3 ILE C 275 LEU C 276 -1 O LEU C 276 N CYS C 262 SHEET 1 AA5 4 SER B 5 ASN B 7 0 SHEET 2 AA5 4 VAL B 19 ASP B 24 -1 O ASP B 24 N SER B 5 SHEET 3 AA5 4 SER B 87 ILE B 91 -1 O LEU B 89 N PHE B 21 SHEET 4 AA5 4 PHE B 76 GLU B 79 -1 N GLU B 79 O THR B 88 SHEET 1 AA6 6 HIS B 10 LYS B 14 0 SHEET 2 AA6 6 THR B 126 VAL B 131 1 O VAL B 131 N THR B 13 SHEET 3 AA6 6 MET B 101 SER B 107 -1 N TYR B 102 O THR B 126 SHEET 4 AA6 6 ARG B 38 GLN B 44 -1 N GLN B 44 O MET B 101 SHEET 5 AA6 6 GLU B 51 GLN B 57 -1 O GLU B 51 N ARG B 43 SHEET 6 AA6 6 GLN B 65 LYS B 68 -1 O GLU B 67 N TYR B 55 SHEET 1 AA7 4 GLU B 141 PHE B 145 0 SHEET 2 AA7 4 LYS B 157 PHE B 167 -1 O THR B 165 N GLU B 141 SHEET 3 AA7 4 TYR B 205 SER B 214 -1 O VAL B 213 N ALA B 158 SHEET 4 AA7 4 VAL B 187 THR B 189 -1 N CYS B 188 O ARG B 210 SHEET 1 AA8 4 GLU B 141 PHE B 145 0 SHEET 2 AA8 4 LYS B 157 PHE B 167 -1 O THR B 165 N GLU B 141 SHEET 3 AA8 4 TYR B 205 SER B 214 -1 O VAL B 213 N ALA B 158 SHEET 4 AA8 4 LEU B 194 LYS B 195 -1 N LEU B 194 O ALA B 206 SHEET 1 AA9 4 LYS B 181 VAL B 183 0 SHEET 2 AA9 4 VAL B 172 VAL B 178 -1 N TRP B 176 O VAL B 183 SHEET 3 AA9 4 CYS B 227 PHE B 231 -1 O GLN B 228 N SER B 175 SHEET 4 AA9 4 GLN B 250 ALA B 254 -1 O GLN B 250 N PHE B 231 SHEET 1 AB1 5 GLU A 5 ASN A 7 0 SHEET 2 AB1 5 LYS A 17 TYR A 25 -1 O ASN A 24 N GLN A 6 SHEET 3 AB1 5 GLN A 86 SER A 94 -1 O SER A 87 N CYS A 23 SHEET 4 AB1 5 LEU A 76 ASP A 81 -1 N ASP A 81 O GLN A 86 SHEET 5 AB1 5 GLU A 65 LYS A 66 -1 N LYS A 66 O VAL A 78 SHEET 1 AB2 5 ALA A 10 GLN A 14 0 SHEET 2 AB2 5 THR A 117 THR A 122 1 O VAL A 120 N LEU A 11 SHEET 3 AB2 5 ALA A 100 GLY A 107 -1 N TYR A 102 O THR A 117 SHEET 4 AB2 5 TYR A 38 GLN A 44 -1 N GLN A 40 O ALA A 105 SHEET 5 AB2 5 VAL A 51 ARG A 57 -1 O VAL A 51 N ARG A 43 SHEET 1 AB3 4 ALA A 10 GLN A 14 0 SHEET 2 AB3 4 THR A 117 THR A 122 1 O VAL A 120 N LEU A 11 SHEET 3 AB3 4 ALA A 100 GLY A 107 -1 N TYR A 102 O THR A 117 SHEET 4 AB3 4 LEU A 111 PHE A 113 -1 O GLN A 112 N LEU A 106 SHEET 1 AB4 4 ALA A 131 LEU A 135 0 SHEET 2 AB4 4 VAL A 145 THR A 149 -1 O VAL A 145 N LEU A 135 SHEET 3 AB4 4 SER A 182 SER A 189 -1 O ALA A 185 N PHE A 148 SHEET 4 AB4 4 VAL A 165 ILE A 167 -1 N TYR A 166 O TRP A 188 SHEET 1 AB5 4 ALA A 131 LEU A 135 0 SHEET 2 AB5 4 VAL A 145 THR A 149 -1 O VAL A 145 N LEU A 135 SHEET 3 AB5 4 SER A 182 SER A 189 -1 O ALA A 185 N PHE A 148 SHEET 4 AB5 4 CYS A 171 LEU A 173 -1 N LEU A 173 O SER A 182 SHEET 1 AB6 4 LYS D 16 SER D 21 0 SHEET 2 AB6 4 ASN D 31 PHE D 40 -1 O TYR D 36 N GLN D 18 SHEET 3 AB6 4 PHE D 72 PHE D 80 -1 O THR D 78 N LEU D 33 SHEET 4 AB6 4 GLU D 60 HIS D 61 -1 N GLU D 60 O TYR D 77 SHEET 1 AB7 4 LYS D 16 SER D 21 0 SHEET 2 AB7 4 ASN D 31 PHE D 40 -1 O TYR D 36 N GLN D 18 SHEET 3 AB7 4 PHE D 72 PHE D 80 -1 O THR D 78 N LEU D 33 SHEET 4 AB7 4 SER D 65 PHE D 66 -1 N SER D 65 O TYR D 73 SHEET 1 AB8 3 GLU D 46 LYS D 51 0 SHEET 2 AB8 3 TYR D 88 ASN D 93 -1 O ARG D 91 N ASP D 48 SHEET 3 AB8 3 LYS D 101 LYS D 104 -1 O LYS D 101 N VAL D 92 SSBOND 1 CYS C 102 CYS C 167 1555 1555 2.03 SSBOND 2 CYS C 207 CYS C 262 1555 1555 2.03 SSBOND 3 CYS B 23 CYS B 104 1555 1555 2.03 SSBOND 4 CYS B 162 CYS B 227 1555 1555 2.03 SSBOND 5 CYS A 23 CYS A 104 1555 1555 2.03 SSBOND 6 CYS A 146 CYS A 196 1555 1555 2.03 SSBOND 7 CYS D 35 CYS D 90 1555 1555 2.03 LINK ND2 ASN C 20 C1 NAG C 301 1555 1555 1.46 LINK ND2 ASN C 57 C1 NAG C 302 1555 1555 1.44 LINK ND2 ASN C 128 C1 NAG C 303 1555 1555 1.44 CISPEP 1 TYR C 213 PRO C 214 0 1.16 CISPEP 2 ASN B 7 PRO B 8 0 -8.98 CISPEP 3 TYR B 168 PRO B 169 0 4.67 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 CONECT 116 6009 CONECT 413 6023 CONECT 790 1277 CONECT 980 6037 CONECT 1277 790 CONECT 1547 1851 CONECT 1851 1547 CONECT 2117 2690 CONECT 2690 2117 CONECT 3139 3651 CONECT 3651 3139 CONECT 4063 4622 CONECT 4622 4063 CONECT 4916 5218 CONECT 5218 4916 CONECT 5444 5871 CONECT 5871 5444 CONECT 6009 116 6010 6020 CONECT 6010 6009 6011 6017 CONECT 6011 6010 6012 6018 CONECT 6012 6011 6013 6019 CONECT 6013 6012 6014 6020 CONECT 6014 6013 6021 CONECT 6015 6016 6017 6022 CONECT 6016 6015 CONECT 6017 6010 6015 CONECT 6018 6011 CONECT 6019 6012 CONECT 6020 6009 6013 CONECT 6021 6014 CONECT 6022 6015 CONECT 6023 413 6024 6034 CONECT 6024 6023 6025 6031 CONECT 6025 6024 6026 6032 CONECT 6026 6025 6027 6033 CONECT 6027 6026 6028 6034 CONECT 6028 6027 6035 CONECT 6029 6030 6031 6036 CONECT 6030 6029 CONECT 6031 6024 6029 CONECT 6032 6025 CONECT 6033 6026 CONECT 6034 6023 6027 CONECT 6035 6028 CONECT 6036 6029 CONECT 6037 980 6038 6048 CONECT 6038 6037 6039 6045 CONECT 6039 6038 6040 6046 CONECT 6040 6039 6041 6047 CONECT 6041 6040 6042 6048 CONECT 6042 6041 6049 CONECT 6043 6044 6045 6050 CONECT 6044 6043 CONECT 6045 6038 6043 CONECT 6046 6039 CONECT 6047 6040 CONECT 6048 6037 6041 CONECT 6049 6042 CONECT 6050 6043 CONECT 6051 6087 CONECT 6052 6060 CONECT 6053 6082 CONECT 6054 6083 CONECT 6055 6084 CONECT 6056 6085 CONECT 6057 6086 CONECT 6058 6087 CONECT 6059 6087 CONECT 6060 6052 6061 CONECT 6061 6060 6062 CONECT 6062 6061 6063 CONECT 6063 6062 6064 CONECT 6064 6063 6071 CONECT 6065 6070 6072 CONECT 6066 6073 6075 CONECT 6067 6074 6076 CONECT 6068 6077 6079 CONECT 6069 6078 6080 CONECT 6070 6065 6081 CONECT 6071 6064 6082 CONECT 6072 6065 6083 CONECT 6073 6066 6082 CONECT 6074 6067 6083 CONECT 6075 6066 6084 CONECT 6076 6067 6085 CONECT 6077 6068 6084 CONECT 6078 6069 6085 CONECT 6079 6068 6086 CONECT 6080 6069 6086 CONECT 6081 6070 6087 CONECT 6082 6053 6071 6073 CONECT 6083 6054 6072 6074 CONECT 6084 6055 6075 6077 CONECT 6085 6056 6076 6078 CONECT 6086 6057 6079 6080 CONECT 6087 6051 6058 6059 6081 CONECT 6088 6089 CONECT 6089 6088 6090 6111 CONECT 6090 6089 6091 CONECT 6091 6090 6092 6094 CONECT 6092 6091 6093 CONECT 6093 6092 CONECT 6094 6091 6095 6110 CONECT 6095 6094 6096 CONECT 6096 6095 6097 CONECT 6097 6096 6098 CONECT 6098 6097 6099 CONECT 6099 6098 6100 CONECT 6100 6099 6101 CONECT 6101 6100 6102 CONECT 6102 6101 6103 CONECT 6103 6102 6104 CONECT 6104 6103 6105 CONECT 6105 6104 6106 CONECT 6106 6105 6107 CONECT 6107 6106 6108 CONECT 6108 6107 6109 CONECT 6109 6108 CONECT 6110 6094 CONECT 6111 6089 6112 CONECT 6112 6111 6113 CONECT 6113 6112 6114 CONECT 6114 6113 6115 CONECT 6115 6114 6116 CONECT 6116 6115 6117 CONECT 6117 6116 6118 CONECT 6118 6117 6119 CONECT 6119 6118 6120 CONECT 6120 6119 6121 CONECT 6121 6120 6122 CONECT 6122 6121 6123 CONECT 6123 6122 6124 CONECT 6124 6123 6125 CONECT 6125 6124 6126 CONECT 6126 6125 6127 CONECT 6127 6126 MASTER 298 0 5 11 73 0 0 6 6112 4 136 66 END