HEADER OXIDOREDUCTASE 14-MAY-26 26TF TITLE CRYSTAL STRUCTURE OF D-APIONATE OXIDOISOMERASE FROM AUREIMONAS TITLE 2 ALTAMIRENSIS IN COMPLEX WITH NAD+(H), ZN2+, MN2+, AND MALONATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NADP OXIDOREDUCTASE COENZYME F420-DEPENDENT; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AUREIMONAS ALTAMIRENSIS; SOURCE 3 ORGANISM_TAXID: 370622; SOURCE 4 GENE: SAMN02745911_3050; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI DH5[ALPHA]; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 668369 KEYWDS D-APIOSE METABOLISM; D-APIONATE; OXIDOISOMERASE; METAL ENZYME, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.WATANABE,Y.AONO REVDAT 1 11-NOV-26 26TF 0 JRNL AUTH S.WATANABE,Y.AONO,S.I.TERAWAKI,H.SATO,T.YOKOI JRNL TITL STRUCTURAL BASIS FOR OXIDATION-COUPLED ISOMERIZATION BY JRNL TITL 2 APNO. JRNL REF J.BIOL.CHEM. 13628 2026 JRNL REFN ESSN 1083-351X JRNL PMID 42849729 JRNL DOI 10.1016/J.JBC.2026.113628 REMARK 2 REMARK 2 RESOLUTION. 1.39 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.39 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.08 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 108330 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.830 REMARK 3 FREE R VALUE TEST SET COUNT : 5237 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.0800 - 4.3300 1.00 3788 149 0.1703 0.1796 REMARK 3 2 4.3300 - 3.4400 0.99 3574 198 0.1424 0.1539 REMARK 3 3 3.4400 - 3.0000 0.99 3536 170 0.1716 0.1744 REMARK 3 4 3.0000 - 2.7300 0.99 3481 184 0.1941 0.2182 REMARK 3 5 2.7300 - 2.5300 0.98 3461 184 0.1919 0.2038 REMARK 3 6 2.5300 - 2.3800 0.97 3436 176 0.1719 0.2140 REMARK 3 7 2.3800 - 2.2600 0.97 3423 157 0.1761 0.1715 REMARK 3 8 2.2600 - 2.1700 0.95 3349 171 0.1752 0.1904 REMARK 3 9 2.1700 - 2.0800 0.95 3328 173 0.1781 0.2065 REMARK 3 10 2.0800 - 2.0100 0.95 3316 180 0.1790 0.2080 REMARK 3 11 2.0100 - 1.9500 0.96 3320 197 0.1652 0.2015 REMARK 3 12 1.9500 - 1.8900 0.98 3432 160 0.1729 0.2056 REMARK 3 13 1.8900 - 1.8400 0.98 3433 158 0.1667 0.1772 REMARK 3 14 1.8400 - 1.8000 0.98 3418 169 0.1795 0.2150 REMARK 3 15 1.8000 - 1.7600 0.99 3443 188 0.1905 0.2126 REMARK 3 16 1.7600 - 1.7200 0.99 3457 163 0.1801 0.2171 REMARK 3 17 1.7200 - 1.6800 1.00 3457 167 0.1749 0.1874 REMARK 3 18 1.6800 - 1.6500 1.00 3493 165 0.1670 0.2158 REMARK 3 19 1.6500 - 1.6200 1.00 3478 168 0.1656 0.1969 REMARK 3 20 1.6200 - 1.6000 1.00 3501 181 0.1639 0.2010 REMARK 3 21 1.6000 - 1.5700 1.00 3442 168 0.1600 0.1840 REMARK 3 22 1.5700 - 1.5500 1.00 3478 167 0.1621 0.1791 REMARK 3 23 1.5500 - 1.5200 1.00 3471 169 0.1687 0.1897 REMARK 3 24 1.5200 - 1.5000 1.00 3444 197 0.1779 0.2149 REMARK 3 25 1.5000 - 1.4800 1.00 3424 208 0.1840 0.2094 REMARK 3 26 1.4800 - 1.4600 1.00 3499 171 0.1945 0.2009 REMARK 3 27 1.4600 - 1.4400 1.00 3440 161 0.2087 0.2461 REMARK 3 28 1.4400 - 1.4300 1.00 3479 168 0.2338 0.2574 REMARK 3 29 1.4300 - 1.4100 1.00 3444 184 0.2549 0.2893 REMARK 3 30 1.4100 - 1.3900 0.83 2848 186 0.3155 0.3350 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.070 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4328 REMARK 3 ANGLE : 1.195 5890 REMARK 3 CHIRALITY : 0.094 667 REMARK 3 PLANARITY : 0.010 764 REMARK 3 DIHEDRAL : 12.474 1562 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 2 THROUGH 275) REMARK 3 ORIGIN FOR THE GROUP (A): 30.1660 -0.4237 -15.7069 REMARK 3 T TENSOR REMARK 3 T11: 0.0901 T22: 0.0886 REMARK 3 T33: 0.1112 T12: -0.0011 REMARK 3 T13: 0.0037 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.4114 L22: 0.2377 REMARK 3 L33: 1.0394 L12: 0.1028 REMARK 3 L13: 0.3453 L23: 0.1312 REMARK 3 S TENSOR REMARK 3 S11: -0.0057 S12: 0.0363 S13: -0.0039 REMARK 3 S21: -0.0186 S22: -0.0003 S23: 0.0201 REMARK 3 S31: -0.0184 S32: -0.0224 S33: 0.0045 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 2 THROUGH 275) REMARK 3 ORIGIN FOR THE GROUP (A): 41.0997 -2.8289 15.5855 REMARK 3 T TENSOR REMARK 3 T11: 0.0835 T22: 0.0903 REMARK 3 T33: 0.1085 T12: -0.0008 REMARK 3 T13: 0.0027 T23: -0.0045 REMARK 3 L TENSOR REMARK 3 L11: 0.2323 L22: 0.2534 REMARK 3 L33: 0.8654 L12: -0.0403 REMARK 3 L13: 0.2383 L23: -0.1014 REMARK 3 S TENSOR REMARK 3 S11: 0.0090 S12: -0.0321 S13: -0.0190 REMARK 3 S21: 0.0323 S22: 0.0155 S23: -0.0213 REMARK 3 S31: 0.0026 S32: 0.0246 S33: -0.0222 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 26TF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-MAY-26. REMARK 100 THE DEPOSITION ID IS D_1300074180. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-FEB-26 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL45XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.28000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 109338 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.390 REMARK 200 RESOLUTION RANGE LOW (A) : 46.080 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 12.00 REMARK 200 R MERGE (I) : 0.39800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.39 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 3.92400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: ALPHAFOLD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM MALONATE 20% W/V REMARK 280 POLYETHYLENE GLYCOL 3,350, EVAPORATION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.44450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.97950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.32850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.97950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.44450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.32850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -202.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -10 REMARK 465 ARG A -9 REMARK 465 GLY A -8 REMARK 465 SER A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 GLY A 0 REMARK 465 SER A 1 REMARK 465 MET B -10 REMARK 465 ARG B -9 REMARK 465 GLY B -8 REMARK 465 SER B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 GLY B 0 REMARK 465 SER B 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 53 CG CD OE1 OE2 REMARK 470 LYS A 73 CG CD CE NZ REMARK 470 LYS A 80 CG CD CE NZ REMARK 470 LYS A 83 CG CD CE NZ REMARK 470 GLU A 152 CG CD OE1 OE2 REMARK 470 ARG A 260 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 265 CG CD OE1 OE2 REMARK 470 LYS B 12 CG CD CE NZ REMARK 470 GLU B 53 CG CD OE1 OE2 REMARK 470 MET B 126 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 617 O HOH B 668 1.98 REMARK 500 O HOH A 554 O HOH A 625 1.99 REMARK 500 O HOH B 643 O HOH B 654 1.99 REMARK 500 O HOH B 430 O HOH B 703 2.04 REMARK 500 OD1 ASP B 92 O3D NAD B 301 2.07 REMARK 500 OD2 ASP B 92 O HOH B 401 2.08 REMARK 500 O HOH A 403 O HOH A 667 2.09 REMARK 500 O HOH A 651 O HOH A 744 2.11 REMARK 500 O HOH B 433 O HOH B 714 2.12 REMARK 500 O HOH A 452 O HOH A 640 2.12 REMARK 500 O HOH B 670 O HOH B 716 2.13 REMARK 500 O HOH A 643 O HOH A 723 2.13 REMARK 500 O HOH A 663 O HOH A 728 2.13 REMARK 500 O HOH B 676 O HOH B 738 2.13 REMARK 500 O HOH B 713 O HOH B 740 2.14 REMARK 500 O HOH A 404 O HOH A 645 2.15 REMARK 500 O HOH B 660 O HOH B 663 2.15 REMARK 500 O HOH A 476 O HOH B 665 2.15 REMARK 500 O HOH B 663 O HOH B 683 2.15 REMARK 500 O HOH A 460 O HOH A 734 2.15 REMARK 500 O HOH B 606 O HOH B 648 2.16 REMARK 500 O HOH A 725 O HOH A 750 2.16 REMARK 500 N THR A 2 O HOH A 401 2.16 REMARK 500 O HOH A 742 O HOH B 613 2.17 REMARK 500 O HOH A 558 O HOH A 709 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP B 92 CB ASP B 92 CG -0.126 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 92 CB - CG - OD1 ANGL. DEV. = -5.4 DEGREES REMARK 500 VAL B 237 CB - CA - C ANGL. DEV. = -13.0 DEGREES REMARK 500 VAL B 237 CG1 - CB - CG2 ANGL. DEV. = 10.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 116 154.37 73.12 REMARK 500 ALA A 137 -31.35 -147.57 REMARK 500 MET A 169 -103.74 -97.14 REMARK 500 VAL A 190 -69.03 -95.23 REMARK 500 HIS B 116 154.22 73.57 REMARK 500 ALA B 137 -33.48 -147.54 REMARK 500 MET B 169 -103.04 -98.11 REMARK 500 VAL B 190 -68.47 -96.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 755 DISTANCE = 6.30 ANGSTROMS REMARK 525 HOH B 766 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH B 767 DISTANCE = 6.47 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 113 NE2 REMARK 620 2 GLU A 183 OE1 104.5 REMARK 620 3 MLA A 302 O1B 111.4 97.9 REMARK 620 4 HIS B 222 NE2 115.3 94.8 126.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 304 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 183 OE2 REMARK 620 2 GLU A 188 OE2 89.6 REMARK 620 3 MLA A 302 O1B 79.8 87.5 REMARK 620 4 MLA A 302 O3B 162.7 94.2 83.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 222 NE2 REMARK 620 2 HIS B 113 NE2 112.4 REMARK 620 3 GLU B 183 OE1 91.2 98.9 REMARK 620 4 MLA B 302 O1A 85.7 127.2 131.1 REMARK 620 5 MLA B 302 O1B 136.0 107.3 100.9 54.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 304 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 183 OE2 REMARK 620 2 GLU B 188 OE2 87.1 REMARK 620 3 MLA B 302 O1B 78.5 91.4 REMARK 620 4 MLA B 302 O3B 160.7 97.7 82.7 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 26JC RELATED DB: PDB DBREF1 26TF A 2 275 UNP A0ABY1INU2_9HYPH DBREF2 26TF A A0ABY1INU2 2 275 DBREF1 26TF B 2 275 UNP A0ABY1INU2_9HYPH DBREF2 26TF B A0ABY1INU2 2 275 SEQADV 26TF MET A -10 UNP A0ABY1INU INITIATING METHIONINE SEQADV 26TF ARG A -9 UNP A0ABY1INU EXPRESSION TAG SEQADV 26TF GLY A -8 UNP A0ABY1INU EXPRESSION TAG SEQADV 26TF SER A -7 UNP A0ABY1INU EXPRESSION TAG SEQADV 26TF HIS A -6 UNP A0ABY1INU EXPRESSION TAG SEQADV 26TF HIS A -5 UNP A0ABY1INU EXPRESSION TAG SEQADV 26TF HIS A -4 UNP A0ABY1INU EXPRESSION TAG SEQADV 26TF HIS A -3 UNP A0ABY1INU EXPRESSION TAG SEQADV 26TF HIS A -2 UNP A0ABY1INU EXPRESSION TAG SEQADV 26TF HIS A -1 UNP A0ABY1INU EXPRESSION TAG SEQADV 26TF GLY A 0 UNP A0ABY1INU EXPRESSION TAG SEQADV 26TF SER A 1 UNP A0ABY1INU EXPRESSION TAG SEQADV 26TF MET B -10 UNP A0ABY1INU INITIATING METHIONINE SEQADV 26TF ARG B -9 UNP A0ABY1INU EXPRESSION TAG SEQADV 26TF GLY B -8 UNP A0ABY1INU EXPRESSION TAG SEQADV 26TF SER B -7 UNP A0ABY1INU EXPRESSION TAG SEQADV 26TF HIS B -6 UNP A0ABY1INU EXPRESSION TAG SEQADV 26TF HIS B -5 UNP A0ABY1INU EXPRESSION TAG SEQADV 26TF HIS B -4 UNP A0ABY1INU EXPRESSION TAG SEQADV 26TF HIS B -3 UNP A0ABY1INU EXPRESSION TAG SEQADV 26TF HIS B -2 UNP A0ABY1INU EXPRESSION TAG SEQADV 26TF HIS B -1 UNP A0ABY1INU EXPRESSION TAG SEQADV 26TF GLY B 0 UNP A0ABY1INU EXPRESSION TAG SEQADV 26TF SER B 1 UNP A0ABY1INU EXPRESSION TAG SEQRES 1 A 286 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER THR SEQRES 2 A 286 SER ILE ALA LEU PHE GLY ALA GLY GLY LYS MET GLY TYR SEQRES 3 A 286 ARG LEU ALA SER ASN LEU LYS GLY SER ARG PHE ASP VAL SEQRES 4 A 286 ARG HIS VAL GLU PRO SER GLU ALA GLY ALA LYS ARG LEU SEQRES 5 A 286 LYS ASP GLY LEU GLY PHE ASP CYS VAL PRO ALA GLU ALA SEQRES 6 A 286 ALA LEU ASP GLY ALA GLU VAL VAL VAL LEU ALA VAL PRO SEQRES 7 A 286 ASP THR LEU ILE GLY LYS VAL ALA ASN GLY ILE GLU LYS SEQRES 8 A 286 SER LEU LYS PRO GLY THR ILE VAL VAL VAL LEU ASP ALA SEQRES 9 A 286 ALA ALA PRO PHE ALA GLY HIS LEU PRO ASN ARG PRO ASP SEQRES 10 A 286 LEU THR TYR PHE VAL THR HIS PRO CYS HIS PRO PRO ILE SEQRES 11 A 286 PHE ASN ASP GLU THR GLU MET ASP ALA LYS ARG ASP PHE SEQRES 12 A 286 PHE GLY GLY ILE ALA ALA LYS GLN HIS ILE THR SER ALA SEQRES 13 A 286 LEU MET GLN GLY PRO ASP GLU HIS TYR ALA LEU GLY GLU SEQRES 14 A 286 GLU VAL ALA LYS VAL ILE TRP ALA PRO VAL MET ARG SER SEQRES 15 A 286 HIS ARG VAL THR VAL GLU GLN MET ALA LEU LEU GLU PRO SEQRES 16 A 286 GLY LEU SER GLU THR VAL CYS ALA SER LEU LEU VAL ALA SEQRES 17 A 286 MET LYS GLU ALA MET ASP GLU VAL VAL ALA ARG GLY VAL SEQRES 18 A 286 PRO LYS GLU ALA ALA ARG ASP PHE LEU LEU GLY HIS MET SEQRES 19 A 286 ASN VAL LEU GLY SER VAL ILE PHE GLU GLU THR PRO GLY SEQRES 20 A 286 VAL PHE SER ASP ALA CYS ASN LYS ALA ILE GLU PHE GLY SEQRES 21 A 286 LYS PRO MET LEU MET ARG ASP ASP TRP LYS ARG VAL PHE SEQRES 22 A 286 GLU PRO GLU GLU LEU ALA ALA SER ILE ARG ARG ILE THR SEQRES 1 B 286 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER THR SEQRES 2 B 286 SER ILE ALA LEU PHE GLY ALA GLY GLY LYS MET GLY TYR SEQRES 3 B 286 ARG LEU ALA SER ASN LEU LYS GLY SER ARG PHE ASP VAL SEQRES 4 B 286 ARG HIS VAL GLU PRO SER GLU ALA GLY ALA LYS ARG LEU SEQRES 5 B 286 LYS ASP GLY LEU GLY PHE ASP CYS VAL PRO ALA GLU ALA SEQRES 6 B 286 ALA LEU ASP GLY ALA GLU VAL VAL VAL LEU ALA VAL PRO SEQRES 7 B 286 ASP THR LEU ILE GLY LYS VAL ALA ASN GLY ILE GLU LYS SEQRES 8 B 286 SER LEU LYS PRO GLY THR ILE VAL VAL VAL LEU ASP ALA SEQRES 9 B 286 ALA ALA PRO PHE ALA GLY HIS LEU PRO ASN ARG PRO ASP SEQRES 10 B 286 LEU THR TYR PHE VAL THR HIS PRO CYS HIS PRO PRO ILE SEQRES 11 B 286 PHE ASN ASP GLU THR GLU MET ASP ALA LYS ARG ASP PHE SEQRES 12 B 286 PHE GLY GLY ILE ALA ALA LYS GLN HIS ILE THR SER ALA SEQRES 13 B 286 LEU MET GLN GLY PRO ASP GLU HIS TYR ALA LEU GLY GLU SEQRES 14 B 286 GLU VAL ALA LYS VAL ILE TRP ALA PRO VAL MET ARG SER SEQRES 15 B 286 HIS ARG VAL THR VAL GLU GLN MET ALA LEU LEU GLU PRO SEQRES 16 B 286 GLY LEU SER GLU THR VAL CYS ALA SER LEU LEU VAL ALA SEQRES 17 B 286 MET LYS GLU ALA MET ASP GLU VAL VAL ALA ARG GLY VAL SEQRES 18 B 286 PRO LYS GLU ALA ALA ARG ASP PHE LEU LEU GLY HIS MET SEQRES 19 B 286 ASN VAL LEU GLY SER VAL ILE PHE GLU GLU THR PRO GLY SEQRES 20 B 286 VAL PHE SER ASP ALA CYS ASN LYS ALA ILE GLU PHE GLY SEQRES 21 B 286 LYS PRO MET LEU MET ARG ASP ASP TRP LYS ARG VAL PHE SEQRES 22 B 286 GLU PRO GLU GLU LEU ALA ALA SER ILE ARG ARG ILE THR HET NAD A 301 44 HET MLA A 302 7 HET ZN A 303 1 HET MN A 304 1 HET NAD B 301 44 HET MLA B 302 7 HET ZN B 303 1 HET MN B 304 1 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM MLA MALONIC ACID HETNAM ZN ZINC ION HETNAM MN MANGANESE (II) ION HETSYN MLA DICARBOXYLIC ACID C3; PROPANEDIOLIC ACID; HETSYN 2 MLA METHANEDICARBOXYLIC ACID FORMUL 3 NAD 2(C21 H27 N7 O14 P2) FORMUL 4 MLA 2(C3 H4 O4) FORMUL 5 ZN 2(ZN 2+) FORMUL 6 MN 2(MN 2+) FORMUL 11 HOH *722(H2 O) HELIX 1 AA1 GLY A 11 LYS A 22 1 12 HELIX 2 AA2 SER A 34 GLY A 46 1 13 HELIX 3 AA3 PRO A 51 ASP A 57 1 7 HELIX 4 AA4 PRO A 67 THR A 69 5 3 HELIX 5 AA5 LEU A 70 GLU A 79 1 10 HELIX 6 AA6 LYS A 80 LEU A 82 5 3 HELIX 7 AA7 ALA A 93 ALA A 98 1 6 HELIX 8 AA8 GLU A 125 ARG A 130 1 6 HELIX 9 AA9 PRO A 150 GLU A 152 5 3 HELIX 10 AB1 HIS A 153 TRP A 165 1 13 HELIX 11 AB2 THR A 175 GLU A 183 1 9 HELIX 12 AB3 VAL A 190 ARG A 208 1 19 HELIX 13 AB4 PRO A 211 PHE A 231 1 21 HELIX 14 AB5 SER A 239 MET A 254 1 16 HELIX 15 AB6 ASP A 257 PHE A 262 5 6 HELIX 16 AB7 GLU A 263 THR A 275 1 13 HELIX 17 AB8 GLY B 11 LYS B 22 1 12 HELIX 18 AB9 SER B 34 GLY B 46 1 13 HELIX 19 AC1 PRO B 51 ASP B 57 1 7 HELIX 20 AC2 PRO B 67 THR B 69 5 3 HELIX 21 AC3 LEU B 70 GLU B 79 1 10 HELIX 22 AC4 LYS B 80 LEU B 82 5 3 HELIX 23 AC5 ALA B 93 ALA B 98 1 6 HELIX 24 AC6 GLU B 125 ARG B 130 1 6 HELIX 25 AC7 GLU B 152 TRP B 165 1 14 HELIX 26 AC8 THR B 175 GLU B 183 1 9 HELIX 27 AC9 VAL B 190 ARG B 208 1 19 HELIX 28 AD1 PRO B 211 PHE B 231 1 21 HELIX 29 AD2 SER B 239 MET B 254 1 16 HELIX 30 AD3 ASP B 257 PHE B 262 5 6 HELIX 31 AD4 GLU B 263 THR B 275 1 13 SHEET 1 AA1 7 ASP A 27 VAL A 31 0 SHEET 2 AA1 7 SER A 3 PHE A 7 1 N ILE A 4 O ARG A 29 SHEET 3 AA1 7 VAL A 61 LEU A 64 1 O VAL A 63 N PHE A 7 SHEET 4 AA1 7 ILE A 87 VAL A 90 1 O VAL A 89 N VAL A 62 SHEET 5 AA1 7 THR A 108 PRO A 114 1 O THR A 108 N VAL A 88 SHEET 6 AA1 7 GLN A 140 GLN A 148 -1 O ALA A 145 N VAL A 111 SHEET 7 AA1 7 VAL A 168 ARG A 173 1 O HIS A 172 N ILE A 142 SHEET 1 AA2 7 ASP B 27 VAL B 31 0 SHEET 2 AA2 7 SER B 3 PHE B 7 1 N LEU B 6 O VAL B 31 SHEET 3 AA2 7 VAL B 61 LEU B 64 1 O VAL B 63 N PHE B 7 SHEET 4 AA2 7 ILE B 87 VAL B 90 1 O VAL B 89 N VAL B 62 SHEET 5 AA2 7 THR B 108 PRO B 114 1 O THR B 108 N VAL B 88 SHEET 6 AA2 7 GLN B 140 GLN B 148 -1 O THR B 143 N HIS B 113 SHEET 7 AA2 7 VAL B 168 ARG B 173 1 O HIS B 172 N ILE B 142 LINK NE2 HIS A 113 ZN ZN A 303 1555 1555 2.10 LINK OE1 GLU A 183 ZN ZN A 303 1555 1555 2.06 LINK OE2 GLU A 183 MN MN A 304 1555 1555 2.10 LINK OE2 GLU A 188 MN MN A 304 1555 1555 2.14 LINK NE2 HIS A 222 ZN ZN B 303 1555 1555 2.18 LINK O1B MLA A 302 ZN ZN A 303 1555 1555 1.94 LINK O1B MLA A 302 MN MN A 304 1555 1555 2.29 LINK O3B MLA A 302 MN MN A 304 1555 1555 2.11 LINK ZN ZN A 303 NE2 HIS B 222 1555 1555 2.12 LINK NE2 HIS B 113 ZN ZN B 303 1555 1555 2.17 LINK OE1 GLU B 183 ZN ZN B 303 1555 1555 2.07 LINK OE2 GLU B 183 MN MN B 304 1555 1555 2.18 LINK OE2 GLU B 188 MN MN B 304 1555 1555 2.16 LINK O1A MLA B 302 ZN ZN B 303 1555 1555 2.64 LINK O1B MLA B 302 ZN ZN B 303 1555 1555 1.93 LINK O1B MLA B 302 MN MN B 304 1555 1555 2.25 LINK O3B MLA B 302 MN MN B 304 1555 1555 2.20 CISPEP 1 ALA A 166 PRO A 167 0 -0.33 CISPEP 2 GLU A 183 PRO A 184 0 13.38 CISPEP 3 ALA B 166 PRO B 167 0 0.31 CISPEP 4 GLU B 183 PRO B 184 0 12.37 CRYST1 70.889 74.657 103.959 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014107 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013395 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009619 0.00000 CONECT 803 4183 CONECT 1348 4183 CONECT 1349 4184 CONECT 1383 4184 CONECT 1634 4236 CONECT 2864 4236 CONECT 3410 4236 CONECT 3411 4237 CONECT 3445 4237 CONECT 3702 4183 CONECT 4132 4133 4134 4135 4154 CONECT 4133 4132 CONECT 4134 4132 CONECT 4135 4132 4136 CONECT 4136 4135 4137 CONECT 4137 4136 4138 4139 CONECT 4138 4137 4143 CONECT 4139 4137 4140 4141 CONECT 4140 4139 CONECT 4141 4139 4142 4143 CONECT 4142 4141 CONECT 4143 4138 4141 4144 CONECT 4144 4143 4145 4153 CONECT 4145 4144 4146 CONECT 4146 4145 4147 CONECT 4147 4146 4148 4153 CONECT 4148 4147 4149 4150 CONECT 4149 4148 CONECT 4150 4148 4151 CONECT 4151 4150 4152 CONECT 4152 4151 4153 CONECT 4153 4144 4147 4152 CONECT 4154 4132 4155 CONECT 4155 4154 4156 4157 4158 CONECT 4156 4155 CONECT 4157 4155 CONECT 4158 4155 4159 CONECT 4159 4158 4160 CONECT 4160 4159 4161 4162 CONECT 4161 4160 4166 CONECT 4162 4160 4163 4164 CONECT 4163 4162 CONECT 4164 4162 4165 4166 CONECT 4165 4164 CONECT 4166 4161 4164 4167 CONECT 4167 4166 4168 4175 CONECT 4168 4167 4169 CONECT 4169 4168 4170 4173 CONECT 4170 4169 4171 4172 CONECT 4171 4170 CONECT 4172 4170 CONECT 4173 4169 4174 CONECT 4174 4173 4175 CONECT 4175 4167 4174 CONECT 4176 4177 4178 4179 CONECT 4177 4176 CONECT 4178 4176 4183 4184 CONECT 4179 4176 4180 CONECT 4180 4179 4181 4182 CONECT 4181 4180 CONECT 4182 4180 4184 CONECT 4183 803 1348 3702 4178 CONECT 4184 1349 1383 4178 4182 CONECT 4185 4186 4187 4188 4207 CONECT 4186 4185 CONECT 4187 4185 CONECT 4188 4185 4189 CONECT 4189 4188 4190 CONECT 4190 4189 4191 4192 CONECT 4191 4190 4196 CONECT 4192 4190 4193 4194 CONECT 4193 4192 CONECT 4194 4192 4195 4196 CONECT 4195 4194 CONECT 4196 4191 4194 4197 CONECT 4197 4196 4198 4206 CONECT 4198 4197 4199 CONECT 4199 4198 4200 CONECT 4200 4199 4201 4206 CONECT 4201 4200 4202 4203 CONECT 4202 4201 CONECT 4203 4201 4204 CONECT 4204 4203 4205 CONECT 4205 4204 4206 CONECT 4206 4197 4200 4205 CONECT 4207 4185 4208 CONECT 4208 4207 4209 4210 4211 CONECT 4209 4208 CONECT 4210 4208 CONECT 4211 4208 4212 CONECT 4212 4211 4213 CONECT 4213 4212 4214 4215 CONECT 4214 4213 4219 CONECT 4215 4213 4216 4217 CONECT 4216 4215 CONECT 4217 4215 4218 4219 CONECT 4218 4217 CONECT 4219 4214 4217 4220 CONECT 4220 4219 4221 4228 CONECT 4221 4220 4222 CONECT 4222 4221 4223 4226 CONECT 4223 4222 4224 4225 CONECT 4224 4223 CONECT 4225 4223 CONECT 4226 4222 4227 CONECT 4227 4226 4228 CONECT 4228 4220 4227 CONECT 4229 4230 4231 4232 CONECT 4230 4229 4236 CONECT 4231 4229 4236 4237 CONECT 4232 4229 4233 CONECT 4233 4232 4234 4235 CONECT 4234 4233 CONECT 4235 4233 4237 CONECT 4236 1634 2864 3410 4230 CONECT 4236 4231 CONECT 4237 3411 3445 4231 4235 MASTER 456 0 8 31 14 0 0 6 4941 2 117 44 END