HEADER OXIDOREDUCTASE 14-MAY-26 26TG TITLE CRYSTAL STRUCTURE OF D-APIONATE OXIDOISOMERASE FROM AUREIMONAS TITLE 2 ALTAMIRENSIS IN COMPLEX WITH NAD+(H), ZN2+, MN2+, AND MALONATE TITLE 3 (COVALENTLY BOUND FORM OF MALONATE TO COENZYME) COMPND MOL_ID: 1; COMPND 2 MOLECULE: NADP OXIDOREDUCTASE COENZYME F420-DEPENDENT; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AUREIMONAS ALTAMIRENSIS; SOURCE 3 ORGANISM_TAXID: 370622; SOURCE 4 GENE: SAMN02745911_3050; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI DH5[ALPHA]; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 668369 KEYWDS D-APIOSE METABOLISM; D-APIONATE; OXIDOISOMERASE; METAL ENZYME, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.WATANABE,Y.AONO REVDAT 1 11-NOV-26 26TG 0 JRNL AUTH S.WATANABE,Y.AONO,S.I.TERAWAKI,H.SATO,T.YOKOI JRNL TITL STRUCTURAL BASIS FOR OXIDATION-COUPLED ISOMERIZATION BY JRNL TITL 2 APNO. JRNL REF J.BIOL.CHEM. 13628 2026 JRNL REFN ESSN 1083-351X JRNL PMID 42849729 JRNL DOI 10.1016/J.JBC.2026.113628 REMARK 2 REMARK 2 RESOLUTION. 1.29 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.29 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.63 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 143410 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.172 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.930 REMARK 3 FREE R VALUE TEST SET COUNT : 7065 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.6300 - 4.0100 1.00 4800 293 0.1527 0.1626 REMARK 3 2 4.0100 - 3.1800 1.00 4676 252 0.1460 0.1398 REMARK 3 3 3.1800 - 2.7800 1.00 4662 214 0.1710 0.1735 REMARK 3 4 2.7800 - 2.5300 1.00 4630 218 0.1765 0.1897 REMARK 3 5 2.5200 - 2.3400 1.00 4607 214 0.1658 0.1755 REMARK 3 6 2.3400 - 2.2100 0.99 4558 241 0.1649 0.1801 REMARK 3 7 2.2100 - 2.1000 1.00 4547 246 0.1560 0.1787 REMARK 3 8 2.1000 - 2.0000 1.00 4538 233 0.1548 0.1621 REMARK 3 9 2.0000 - 1.9300 1.00 4554 225 0.1556 0.1699 REMARK 3 10 1.9300 - 1.8600 1.00 4541 235 0.1673 0.1967 REMARK 3 11 1.8600 - 1.8000 1.00 4511 236 0.1629 0.1772 REMARK 3 12 1.8000 - 1.7500 1.00 4581 223 0.1681 0.1867 REMARK 3 13 1.7500 - 1.7000 1.00 4500 253 0.1579 0.1796 REMARK 3 14 1.7000 - 1.6600 1.00 4550 212 0.1484 0.1804 REMARK 3 15 1.6600 - 1.6300 1.00 4541 217 0.1480 0.1744 REMARK 3 16 1.6300 - 1.5900 1.00 4521 234 0.1463 0.1591 REMARK 3 17 1.5900 - 1.5600 1.00 4498 248 0.1390 0.1646 REMARK 3 18 1.5600 - 1.5300 1.00 4528 223 0.1419 0.1651 REMARK 3 19 1.5300 - 1.5000 1.00 4529 233 0.1431 0.1585 REMARK 3 20 1.5000 - 1.4800 1.00 4502 231 0.1449 0.1681 REMARK 3 21 1.4800 - 1.4500 1.00 4514 220 0.1576 0.1770 REMARK 3 22 1.4500 - 1.4300 1.00 4494 235 0.1643 0.1863 REMARK 3 23 1.4300 - 1.4100 1.00 4480 247 0.1737 0.1988 REMARK 3 24 1.4100 - 1.3900 1.00 4561 210 0.1750 0.2031 REMARK 3 25 1.3900 - 1.3700 1.00 4466 285 0.1801 0.2014 REMARK 3 26 1.3700 - 1.3500 1.00 4465 243 0.1802 0.2008 REMARK 3 27 1.3500 - 1.3400 1.00 4498 253 0.1785 0.1954 REMARK 3 28 1.3400 - 1.3200 1.00 4477 240 0.1774 0.1991 REMARK 3 29 1.3200 - 1.3000 1.00 4462 234 0.1904 0.1910 REMARK 3 30 1.3000 - 1.2900 1.00 4554 217 0.2949 0.2993 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.780 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 4316 REMARK 3 ANGLE : 1.255 5888 REMARK 3 CHIRALITY : 0.082 674 REMARK 3 PLANARITY : 0.011 762 REMARK 3 DIHEDRAL : 11.544 1550 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 2 THROUGH 275) REMARK 3 ORIGIN FOR THE GROUP (A): -30.4878 -0.3155 15.6476 REMARK 3 T TENSOR REMARK 3 T11: 0.0818 T22: 0.0750 REMARK 3 T33: 0.0974 T12: 0.0031 REMARK 3 T13: -0.0015 T23: -0.0095 REMARK 3 L TENSOR REMARK 3 L11: 0.3772 L22: 0.2564 REMARK 3 L33: 0.7551 L12: -0.1311 REMARK 3 L13: 0.2410 L23: -0.1273 REMARK 3 S TENSOR REMARK 3 S11: -0.0220 S12: -0.0473 S13: 0.0270 REMARK 3 S21: 0.0327 S22: 0.0144 S23: -0.0297 REMARK 3 S31: -0.0304 S32: 0.0346 S33: 0.0099 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 2 THROUGH 275) REMARK 3 ORIGIN FOR THE GROUP (A): -41.4128 -2.4992 -15.5602 REMARK 3 T TENSOR REMARK 3 T11: 0.0834 T22: 0.0702 REMARK 3 T33: 0.0952 T12: 0.0052 REMARK 3 T13: 0.0011 T23: 0.0012 REMARK 3 L TENSOR REMARK 3 L11: 0.3421 L22: 0.3416 REMARK 3 L33: 0.5710 L12: -0.0100 REMARK 3 L13: 0.0520 L23: 0.1431 REMARK 3 S TENSOR REMARK 3 S11: 0.0183 S12: 0.0290 S13: -0.0070 REMARK 3 S21: -0.0442 S22: -0.0212 S23: 0.0079 REMARK 3 S31: -0.0328 S32: -0.0559 S33: 0.0038 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 26TG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-MAY-26. REMARK 100 THE DEPOSITION ID IS D_1300074142. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JAN-26 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL45XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 143598 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.290 REMARK 200 RESOLUTION RANGE LOW (A) : 46.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 26.50 REMARK 200 R MERGE (I) : 0.11800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.29 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.31 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.63600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: ALPHAFOLD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM MALONATE PH 7.0 20% W/V REMARK 280 POLYETHYLENE GLYCOL 3,350, EVAPORATION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.85500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.28700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.89600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.28700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.85500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.89600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -208.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -10 REMARK 465 ARG A -9 REMARK 465 GLY A -8 REMARK 465 SER A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 GLY A 0 REMARK 465 SER A 1 REMARK 465 MET B -10 REMARK 465 ARG B -9 REMARK 465 GLY B -8 REMARK 465 SER B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 GLY B 0 REMARK 465 SER B 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 53 CG CD OE1 OE2 REMARK 470 LYS A 73 CG CD CE NZ REMARK 470 ASN A 76 CG OD1 ND2 REMARK 470 LYS A 80 CG CD CE NZ REMARK 470 LYS A 83 CG CD CE NZ REMARK 470 ASP A 127 CG OD1 OD2 REMARK 470 GLU A 152 CG CD OE1 OE2 REMARK 470 ASP A 256 CG OD1 OD2 REMARK 470 GLU B 35 CG CD OE1 OE2 REMARK 470 GLU B 53 CG CD OE1 OE2 REMARK 470 GLU B 60 CG CD OE1 OE2 REMARK 470 LYS B 73 CG CD CE NZ REMARK 470 ASN B 76 CG OD1 ND2 REMARK 470 LYS B 80 CG CD CE NZ REMARK 470 LYS B 83 CG CD CE NZ REMARK 470 GLU B 125 CG CD OE1 OE2 REMARK 470 MET B 126 CG SD CE REMARK 470 GLU B 152 CG CD OE1 OE2 REMARK 470 LYS B 250 CG CD CE NZ REMARK 470 GLU B 265 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 791 O HOH A 832 2.11 REMARK 500 O HOH A 413 O HOH B 712 2.12 REMARK 500 OE1 GLU B 204 O HOH B 401 2.14 REMARK 500 O HOH B 667 O HOH B 673 2.18 REMARK 500 O HOH A 809 O HOH B 581 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 814 O HOH B 632 2455 2.06 REMARK 500 O HOH A 818 O HOH B 829 2355 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 116 153.50 71.11 REMARK 500 ALA A 137 -33.14 -149.95 REMARK 500 MET A 169 -102.12 -99.39 REMARK 500 VAL A 190 -68.21 -93.31 REMARK 500 HIS B 116 154.50 71.98 REMARK 500 ALA B 137 -32.60 -152.22 REMARK 500 MET B 169 -104.50 -99.64 REMARK 500 VAL B 190 -67.66 -93.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 840 DISTANCE = 6.41 ANGSTROMS REMARK 525 HOH A 841 DISTANCE = 6.51 ANGSTROMS REMARK 525 HOH B 835 DISTANCE = 6.10 ANGSTROMS REMARK 525 HOH B 836 DISTANCE = 6.38 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 113 NE2 REMARK 620 2 GLU A 183 OE1 100.7 REMARK 620 3 MLA A 302 O1A 94.0 154.4 REMARK 620 4 MLA A 302 O1B 91.9 101.1 57.2 REMARK 620 5 HIS B 222 NE2 111.6 97.8 96.0 146.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 304 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 183 OE2 REMARK 620 2 GLU A 188 OE2 86.5 REMARK 620 3 MLA A 302 O1B 80.1 90.7 REMARK 620 4 MLA A 302 O3B 156.7 102.4 78.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 222 NE2 REMARK 620 2 HIS B 113 NE2 110.6 REMARK 620 3 GLU B 183 OE1 96.2 99.7 REMARK 620 4 MLA B 301 O1A 97.3 94.8 155.3 REMARK 620 5 MLA B 301 O1B 148.2 92.1 101.6 57.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 304 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 183 OE2 REMARK 620 2 GLU B 188 OE2 85.9 REMARK 620 3 MLA B 301 O1B 80.5 91.9 REMARK 620 4 MLA B 301 O3B 156.8 102.6 77.7 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 26JC RELATED DB: PDB DBREF1 26TG A 2 275 UNP A0ABY1INU2_9HYPH DBREF2 26TG A A0ABY1INU2 2 275 DBREF1 26TG B 2 275 UNP A0ABY1INU2_9HYPH DBREF2 26TG B A0ABY1INU2 2 275 SEQADV 26TG MET A -10 UNP A0ABY1INU INITIATING METHIONINE SEQADV 26TG ARG A -9 UNP A0ABY1INU EXPRESSION TAG SEQADV 26TG GLY A -8 UNP A0ABY1INU EXPRESSION TAG SEQADV 26TG SER A -7 UNP A0ABY1INU EXPRESSION TAG SEQADV 26TG HIS A -6 UNP A0ABY1INU EXPRESSION TAG SEQADV 26TG HIS A -5 UNP A0ABY1INU EXPRESSION TAG SEQADV 26TG HIS A -4 UNP A0ABY1INU EXPRESSION TAG SEQADV 26TG HIS A -3 UNP A0ABY1INU EXPRESSION TAG SEQADV 26TG HIS A -2 UNP A0ABY1INU EXPRESSION TAG SEQADV 26TG HIS A -1 UNP A0ABY1INU EXPRESSION TAG SEQADV 26TG GLY A 0 UNP A0ABY1INU EXPRESSION TAG SEQADV 26TG SER A 1 UNP A0ABY1INU EXPRESSION TAG SEQADV 26TG MET B -10 UNP A0ABY1INU INITIATING METHIONINE SEQADV 26TG ARG B -9 UNP A0ABY1INU EXPRESSION TAG SEQADV 26TG GLY B -8 UNP A0ABY1INU EXPRESSION TAG SEQADV 26TG SER B -7 UNP A0ABY1INU EXPRESSION TAG SEQADV 26TG HIS B -6 UNP A0ABY1INU EXPRESSION TAG SEQADV 26TG HIS B -5 UNP A0ABY1INU EXPRESSION TAG SEQADV 26TG HIS B -4 UNP A0ABY1INU EXPRESSION TAG SEQADV 26TG HIS B -3 UNP A0ABY1INU EXPRESSION TAG SEQADV 26TG HIS B -2 UNP A0ABY1INU EXPRESSION TAG SEQADV 26TG HIS B -1 UNP A0ABY1INU EXPRESSION TAG SEQADV 26TG GLY B 0 UNP A0ABY1INU EXPRESSION TAG SEQADV 26TG SER B 1 UNP A0ABY1INU EXPRESSION TAG SEQRES 1 A 286 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER THR SEQRES 2 A 286 SER ILE ALA LEU PHE GLY ALA GLY GLY LYS MET GLY TYR SEQRES 3 A 286 ARG LEU ALA SER ASN LEU LYS GLY SER ARG PHE ASP VAL SEQRES 4 A 286 ARG HIS VAL GLU PRO SER GLU ALA GLY ALA LYS ARG LEU SEQRES 5 A 286 LYS ASP GLY LEU GLY PHE ASP CYS VAL PRO ALA GLU ALA SEQRES 6 A 286 ALA LEU ASP GLY ALA GLU VAL VAL VAL LEU ALA VAL PRO SEQRES 7 A 286 ASP THR LEU ILE GLY LYS VAL ALA ASN GLY ILE GLU LYS SEQRES 8 A 286 SER LEU LYS PRO GLY THR ILE VAL VAL VAL LEU ASP ALA SEQRES 9 A 286 ALA ALA PRO PHE ALA GLY HIS LEU PRO ASN ARG PRO ASP SEQRES 10 A 286 LEU THR TYR PHE VAL THR HIS PRO CYS HIS PRO PRO ILE SEQRES 11 A 286 PHE ASN ASP GLU THR GLU MET ASP ALA LYS ARG ASP PHE SEQRES 12 A 286 PHE GLY GLY ILE ALA ALA LYS GLN HIS ILE THR SER ALA SEQRES 13 A 286 LEU MET GLN GLY PRO ASP GLU HIS TYR ALA LEU GLY GLU SEQRES 14 A 286 GLU VAL ALA LYS VAL ILE TRP ALA PRO VAL MET ARG SER SEQRES 15 A 286 HIS ARG VAL THR VAL GLU GLN MET ALA LEU LEU GLU PRO SEQRES 16 A 286 GLY LEU SER GLU THR VAL CYS ALA SER LEU LEU VAL ALA SEQRES 17 A 286 MET LYS GLU ALA MET ASP GLU VAL VAL ALA ARG GLY VAL SEQRES 18 A 286 PRO LYS GLU ALA ALA ARG ASP PHE LEU LEU GLY HIS MET SEQRES 19 A 286 ASN VAL LEU GLY SER VAL ILE PHE GLU GLU THR PRO GLY SEQRES 20 A 286 VAL PHE SER ASP ALA CYS ASN LYS ALA ILE GLU PHE GLY SEQRES 21 A 286 LYS PRO MET LEU MET ARG ASP ASP TRP LYS ARG VAL PHE SEQRES 22 A 286 GLU PRO GLU GLU LEU ALA ALA SER ILE ARG ARG ILE THR SEQRES 1 B 286 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER THR SEQRES 2 B 286 SER ILE ALA LEU PHE GLY ALA GLY GLY LYS MET GLY TYR SEQRES 3 B 286 ARG LEU ALA SER ASN LEU LYS GLY SER ARG PHE ASP VAL SEQRES 4 B 286 ARG HIS VAL GLU PRO SER GLU ALA GLY ALA LYS ARG LEU SEQRES 5 B 286 LYS ASP GLY LEU GLY PHE ASP CYS VAL PRO ALA GLU ALA SEQRES 6 B 286 ALA LEU ASP GLY ALA GLU VAL VAL VAL LEU ALA VAL PRO SEQRES 7 B 286 ASP THR LEU ILE GLY LYS VAL ALA ASN GLY ILE GLU LYS SEQRES 8 B 286 SER LEU LYS PRO GLY THR ILE VAL VAL VAL LEU ASP ALA SEQRES 9 B 286 ALA ALA PRO PHE ALA GLY HIS LEU PRO ASN ARG PRO ASP SEQRES 10 B 286 LEU THR TYR PHE VAL THR HIS PRO CYS HIS PRO PRO ILE SEQRES 11 B 286 PHE ASN ASP GLU THR GLU MET ASP ALA LYS ARG ASP PHE SEQRES 12 B 286 PHE GLY GLY ILE ALA ALA LYS GLN HIS ILE THR SER ALA SEQRES 13 B 286 LEU MET GLN GLY PRO ASP GLU HIS TYR ALA LEU GLY GLU SEQRES 14 B 286 GLU VAL ALA LYS VAL ILE TRP ALA PRO VAL MET ARG SER SEQRES 15 B 286 HIS ARG VAL THR VAL GLU GLN MET ALA LEU LEU GLU PRO SEQRES 16 B 286 GLY LEU SER GLU THR VAL CYS ALA SER LEU LEU VAL ALA SEQRES 17 B 286 MET LYS GLU ALA MET ASP GLU VAL VAL ALA ARG GLY VAL SEQRES 18 B 286 PRO LYS GLU ALA ALA ARG ASP PHE LEU LEU GLY HIS MET SEQRES 19 B 286 ASN VAL LEU GLY SER VAL ILE PHE GLU GLU THR PRO GLY SEQRES 20 B 286 VAL PHE SER ASP ALA CYS ASN LYS ALA ILE GLU PHE GLY SEQRES 21 B 286 LYS PRO MET LEU MET ARG ASP ASP TRP LYS ARG VAL PHE SEQRES 22 B 286 GLU PRO GLU GLU LEU ALA ALA SER ILE ARG ARG ILE THR HET NAD A 301 44 HET MLA A 302 7 HET ZN A 303 1 HET MN A 304 1 HET MLA B 301 7 HET NAD B 302 44 HET ZN B 303 1 HET MN B 304 1 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM MLA MALONIC ACID HETNAM ZN ZINC ION HETNAM MN MANGANESE (II) ION HETSYN MLA DICARBOXYLIC ACID C3; PROPANEDIOLIC ACID; HETSYN 2 MLA METHANEDICARBOXYLIC ACID FORMUL 3 NAD 2(C21 H27 N7 O14 P2) FORMUL 4 MLA 2(C3 H4 O4) FORMUL 5 ZN 2(ZN 2+) FORMUL 6 MN 2(MN 2+) FORMUL 11 HOH *877(H2 O) HELIX 1 AA1 GLY A 11 LYS A 22 1 12 HELIX 2 AA2 SER A 34 GLY A 46 1 13 HELIX 3 AA3 PRO A 51 ASP A 57 1 7 HELIX 4 AA4 PRO A 67 THR A 69 5 3 HELIX 5 AA5 LEU A 70 GLU A 79 1 10 HELIX 6 AA6 LYS A 80 LEU A 82 5 3 HELIX 7 AA7 ALA A 93 ALA A 98 1 6 HELIX 8 AA8 GLU A 125 ARG A 130 1 6 HELIX 9 AA9 PRO A 150 GLU A 152 5 3 HELIX 10 AB1 HIS A 153 TRP A 165 1 13 HELIX 11 AB2 THR A 175 GLU A 183 1 9 HELIX 12 AB3 VAL A 190 ARG A 208 1 19 HELIX 13 AB4 PRO A 211 PHE A 231 1 21 HELIX 14 AB5 SER A 239 MET A 254 1 16 HELIX 15 AB6 ASP A 257 PHE A 262 5 6 HELIX 16 AB7 GLU A 263 THR A 275 1 13 HELIX 17 AB8 GLY B 11 LYS B 22 1 12 HELIX 18 AB9 SER B 34 GLY B 46 1 13 HELIX 19 AC1 PRO B 51 ASP B 57 1 7 HELIX 20 AC2 PRO B 67 THR B 69 5 3 HELIX 21 AC3 LEU B 70 GLU B 79 1 10 HELIX 22 AC4 LYS B 80 LEU B 82 5 3 HELIX 23 AC5 ALA B 93 ALA B 98 1 6 HELIX 24 AC6 GLU B 125 ARG B 130 1 6 HELIX 25 AC7 GLU B 152 TRP B 165 1 14 HELIX 26 AC8 THR B 175 GLU B 183 1 9 HELIX 27 AC9 VAL B 190 ARG B 208 1 19 HELIX 28 AD1 PRO B 211 PHE B 231 1 21 HELIX 29 AD2 SER B 239 MET B 254 1 16 HELIX 30 AD3 ASP B 257 PHE B 262 5 6 HELIX 31 AD4 GLU B 263 THR B 275 1 13 SHEET 1 AA1 7 ASP A 27 VAL A 31 0 SHEET 2 AA1 7 SER A 3 PHE A 7 1 N ILE A 4 O ARG A 29 SHEET 3 AA1 7 VAL A 61 LEU A 64 1 O VAL A 63 N PHE A 7 SHEET 4 AA1 7 ILE A 87 VAL A 90 1 O VAL A 89 N VAL A 62 SHEET 5 AA1 7 THR A 108 PRO A 114 1 O THR A 108 N VAL A 88 SHEET 6 AA1 7 GLN A 140 GLN A 148 -1 O ALA A 145 N VAL A 111 SHEET 7 AA1 7 VAL A 168 ARG A 173 1 O HIS A 172 N ILE A 142 SHEET 1 AA2 7 ASP B 27 VAL B 31 0 SHEET 2 AA2 7 SER B 3 PHE B 7 1 N LEU B 6 O VAL B 31 SHEET 3 AA2 7 VAL B 61 LEU B 64 1 O VAL B 63 N PHE B 7 SHEET 4 AA2 7 ILE B 87 VAL B 90 1 O VAL B 89 N VAL B 62 SHEET 5 AA2 7 THR B 108 PRO B 114 1 O THR B 108 N VAL B 88 SHEET 6 AA2 7 GLN B 140 GLN B 148 -1 O ALA B 145 N VAL B 111 SHEET 7 AA2 7 VAL B 168 ARG B 173 1 O HIS B 172 N ILE B 142 LINK C4N NAD A 301 C2 MLA A 302 1555 1555 1.52 LINK C2 MLA B 301 C4N NAD B 302 1555 1555 1.51 LINK NE2 HIS A 113 ZN ZN A 303 1555 1555 2.17 LINK OE1 GLU A 183 ZN ZN A 303 1555 1555 2.06 LINK OE2 GLU A 183 MN MN A 304 1555 1555 2.11 LINK OE2 GLU A 188 MN MN A 304 1555 1555 2.22 LINK NE2 HIS A 222 ZN ZN B 303 1555 1555 2.17 LINK O1A MLA A 302 ZN ZN A 303 1555 1555 2.39 LINK O1B MLA A 302 ZN ZN A 303 1555 1555 2.08 LINK O1B MLA A 302 MN MN A 304 1555 1555 2.19 LINK O3B MLA A 302 MN MN A 304 1555 1555 2.16 LINK ZN ZN A 303 NE2 HIS B 222 1555 1555 2.15 LINK NE2 HIS B 113 ZN ZN B 303 1555 1555 2.20 LINK OE1 GLU B 183 ZN ZN B 303 1555 1555 2.06 LINK OE2 GLU B 183 MN MN B 304 1555 1555 2.13 LINK OE2 GLU B 188 MN MN B 304 1555 1555 2.21 LINK O1A MLA B 301 ZN ZN B 303 1555 1555 2.37 LINK O1B MLA B 301 ZN ZN B 303 1555 1555 2.12 LINK O1B MLA B 301 MN MN B 304 1555 1555 2.17 LINK O3B MLA B 301 MN MN B 304 1555 1555 2.16 CISPEP 1 ALA A 166 PRO A 167 0 1.32 CISPEP 2 GLU A 183 PRO A 184 0 16.48 CISPEP 3 ALA B 166 PRO B 167 0 1.48 CISPEP 4 GLU B 183 PRO B 184 0 15.99 CRYST1 71.710 75.792 104.574 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013945 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013194 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009563 0.00000 CONECT 807 4166 CONECT 1349 4166 CONECT 1350 4167 CONECT 1384 4167 CONECT 1638 4219 CONECT 2863 4219 CONECT 3401 4219 CONECT 3402 4220 CONECT 3436 4220 CONECT 3693 4166 CONECT 4115 4116 4117 4118 4137 CONECT 4116 4115 CONECT 4117 4115 CONECT 4118 4115 4119 CONECT 4119 4118 4120 CONECT 4120 4119 4121 4122 CONECT 4121 4120 4126 CONECT 4122 4120 4123 4124 CONECT 4123 4122 CONECT 4124 4122 4125 4126 CONECT 4125 4124 CONECT 4126 4121 4124 4127 CONECT 4127 4126 4128 4136 CONECT 4128 4127 4129 CONECT 4129 4128 4130 CONECT 4130 4129 4131 4136 CONECT 4131 4130 4132 4133 CONECT 4132 4131 CONECT 4133 4131 4134 CONECT 4134 4133 4135 CONECT 4135 4134 4136 CONECT 4136 4127 4130 4135 CONECT 4137 4115 4138 CONECT 4138 4137 4139 4140 4141 CONECT 4139 4138 CONECT 4140 4138 CONECT 4141 4138 4142 CONECT 4142 4141 4143 CONECT 4143 4142 4144 4145 CONECT 4144 4143 4149 CONECT 4145 4143 4146 4147 CONECT 4146 4145 CONECT 4147 4145 4148 4149 CONECT 4148 4147 CONECT 4149 4144 4147 4150 CONECT 4150 4149 4151 4158 CONECT 4151 4150 4152 CONECT 4152 4151 4153 4156 CONECT 4153 4152 4154 4155 CONECT 4154 4153 CONECT 4155 4153 CONECT 4156 4152 4157 4162 CONECT 4157 4156 4158 CONECT 4158 4150 4157 CONECT 4159 4160 4161 4162 CONECT 4160 4159 4166 CONECT 4161 4159 4166 4167 CONECT 4162 4156 4159 4163 CONECT 4163 4162 4164 4165 CONECT 4164 4163 CONECT 4165 4163 4167 CONECT 4166 807 1349 3693 4160 CONECT 4166 4161 CONECT 4167 1350 1384 4161 4165 CONECT 4168 4169 4170 4171 CONECT 4169 4168 4219 CONECT 4170 4168 4219 4220 CONECT 4171 4168 4172 4216 CONECT 4172 4171 4173 4174 CONECT 4173 4172 CONECT 4174 4172 4220 CONECT 4175 4176 4177 4178 4197 CONECT 4176 4175 CONECT 4177 4175 CONECT 4178 4175 4179 CONECT 4179 4178 4180 CONECT 4180 4179 4181 4182 CONECT 4181 4180 4186 CONECT 4182 4180 4183 4184 CONECT 4183 4182 CONECT 4184 4182 4185 4186 CONECT 4185 4184 CONECT 4186 4181 4184 4187 CONECT 4187 4186 4188 4196 CONECT 4188 4187 4189 CONECT 4189 4188 4190 CONECT 4190 4189 4191 4196 CONECT 4191 4190 4192 4193 CONECT 4192 4191 CONECT 4193 4191 4194 CONECT 4194 4193 4195 CONECT 4195 4194 4196 CONECT 4196 4187 4190 4195 CONECT 4197 4175 4198 CONECT 4198 4197 4199 4200 4201 CONECT 4199 4198 CONECT 4200 4198 CONECT 4201 4198 4202 CONECT 4202 4201 4203 CONECT 4203 4202 4204 4205 CONECT 4204 4203 4209 CONECT 4205 4203 4206 4207 CONECT 4206 4205 CONECT 4207 4205 4208 4209 CONECT 4208 4207 CONECT 4209 4204 4207 4210 CONECT 4210 4209 4211 4218 CONECT 4211 4210 4212 CONECT 4212 4211 4213 4216 CONECT 4213 4212 4214 4215 CONECT 4214 4213 CONECT 4215 4213 CONECT 4216 4171 4212 4217 CONECT 4217 4216 4218 CONECT 4218 4210 4217 CONECT 4219 1638 2863 3401 4169 CONECT 4219 4170 CONECT 4220 3402 3436 4170 4174 MASTER 428 0 8 31 14 0 0 6 5062 2 118 44 END