HEADER OXIDOREDUCTASE 14-MAY-26 26TH TITLE CRYSTAL STRUCTURE OF D-APIONATE OXIDOISOMERASE FROM AUREIMONAS TITLE 2 ALTAMIRENSIS IN COMPLEX WITH NAD+(H), ZN2+, MN2+, AND CYCLOPROPANE-1, TITLE 3 1-DICARBOXYLIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: NADP OXIDOREDUCTASE COENZYME F420-DEPENDENT; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AUREIMONAS ALTAMIRENSIS; SOURCE 3 ORGANISM_TAXID: 370622; SOURCE 4 GENE: SAMN02745911_3050; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI DH5[ALPHA]; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 668369 KEYWDS D-APIOSE METABOLISM; D-APIONATE; OXIDOISOMERASE; METAL ENZYME, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.WATANABE,Y.AONO REVDAT 1 11-NOV-26 26TH 0 JRNL AUTH S.WATANABE,Y.AONO,S.I.TERAWAKI,H.SATO,T.YOKOI JRNL TITL STRUCTURAL BASIS FOR OXIDATION-COUPLED ISOMERIZATION BY JRNL TITL 2 APNO. JRNL REF J.BIOL.CHEM. 13628 2026 JRNL REFN ESSN 1083-351X JRNL PMID 42849729 JRNL DOI 10.1016/J.JBC.2026.113628 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.21 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 81190 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.880 REMARK 3 FREE R VALUE TEST SET COUNT : 3960 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.2100 - 4.7100 1.00 2969 146 0.1780 0.1896 REMARK 3 2 4.7000 - 3.7400 1.00 2845 146 0.1377 0.1527 REMARK 3 3 3.7400 - 3.2600 1.00 2851 104 0.1528 0.1641 REMARK 3 4 3.2600 - 2.9600 1.00 2779 169 0.1642 0.2034 REMARK 3 5 2.9600 - 2.7500 1.00 2793 142 0.1751 0.1716 REMARK 3 6 2.7500 - 2.5900 1.00 2784 132 0.1736 0.2119 REMARK 3 7 2.5900 - 2.4600 1.00 2743 160 0.1672 0.1692 REMARK 3 8 2.4600 - 2.3500 1.00 2778 134 0.1598 0.2033 REMARK 3 9 2.3500 - 2.2600 1.00 2754 148 0.1599 0.1767 REMARK 3 10 2.2600 - 2.1800 1.00 2755 146 0.1529 0.1948 REMARK 3 11 2.1800 - 2.1200 1.00 2742 161 0.1519 0.1666 REMARK 3 12 2.1200 - 2.0600 1.00 2748 132 0.1597 0.1684 REMARK 3 13 2.0600 - 2.0000 1.00 2731 121 0.1560 0.1886 REMARK 3 14 2.0000 - 1.9500 1.00 2740 150 0.1551 0.1768 REMARK 3 15 1.9500 - 1.9100 1.00 2726 157 0.1541 0.1798 REMARK 3 16 1.9100 - 1.8700 1.00 2724 150 0.1476 0.1631 REMARK 3 17 1.8700 - 1.8300 1.00 2728 131 0.1484 0.1689 REMARK 3 18 1.8300 - 1.8000 1.00 2755 133 0.1492 0.1794 REMARK 3 19 1.8000 - 1.7600 1.00 2723 151 0.1588 0.1929 REMARK 3 20 1.7600 - 1.7300 1.00 2716 163 0.1726 0.2042 REMARK 3 21 1.7300 - 1.7100 1.00 2710 134 0.1944 0.2219 REMARK 3 22 1.7100 - 1.6800 1.00 2732 164 0.1837 0.2269 REMARK 3 23 1.6800 - 1.6600 1.00 2726 146 0.1696 0.2153 REMARK 3 24 1.6600 - 1.6300 1.00 2719 119 0.1694 0.2269 REMARK 3 25 1.6300 - 1.6100 1.00 2735 130 0.1694 0.1862 REMARK 3 26 1.6100 - 1.5900 1.00 2744 128 0.1765 0.2285 REMARK 3 27 1.5900 - 1.5700 1.00 2741 123 0.1839 0.2278 REMARK 3 28 1.5700 - 1.5500 1.00 2739 140 0.1977 0.2201 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.136 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.217 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 4293 REMARK 3 ANGLE : 1.227 5860 REMARK 3 CHIRALITY : 0.068 668 REMARK 3 PLANARITY : 0.010 759 REMARK 3 DIHEDRAL : 13.002 1550 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 2 THROUGH 275) REMARK 3 ORIGIN FOR THE GROUP (A): 30.1992 -0.4073 -15.7398 REMARK 3 T TENSOR REMARK 3 T11: 0.0571 T22: 0.0463 REMARK 3 T33: 0.0618 T12: 0.0005 REMARK 3 T13: 0.0008 T23: 0.0035 REMARK 3 L TENSOR REMARK 3 L11: 0.5744 L22: 0.3040 REMARK 3 L33: 0.9712 L12: 0.1816 REMARK 3 L13: 0.3571 L23: 0.1158 REMARK 3 S TENSOR REMARK 3 S11: -0.0261 S12: 0.0880 S13: 0.0243 REMARK 3 S21: -0.0374 S22: 0.0141 S23: 0.0419 REMARK 3 S31: -0.0334 S32: -0.0207 S33: 0.0058 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 2 THROUGH 275) REMARK 3 ORIGIN FOR THE GROUP (A): 41.2149 -2.8370 15.4568 REMARK 3 T TENSOR REMARK 3 T11: 0.0451 T22: 0.0355 REMARK 3 T33: 0.0595 T12: -0.0056 REMARK 3 T13: 0.0031 T23: -0.0059 REMARK 3 L TENSOR REMARK 3 L11: 0.2718 L22: 0.2849 REMARK 3 L33: 0.9818 L12: -0.0889 REMARK 3 L13: 0.2554 L23: -0.1190 REMARK 3 S TENSOR REMARK 3 S11: 0.0035 S12: -0.0183 S13: -0.0065 REMARK 3 S21: 0.0281 S22: 0.0129 S23: -0.0178 REMARK 3 S31: -0.0094 S32: 0.0352 S33: -0.0160 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and (resid 2 through 39 or REMARK 3 resid 41 through 125 or (resid 126 REMARK 3 through 128 and (name N or name CA or REMARK 3 name C or name O or name CB )) or resid REMARK 3 129 through 190 or resid 192 through 222 REMARK 3 or resid 224 through 275)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and (resid 2 through 39 or REMARK 3 resid 41 through 190 or resid 192 through REMARK 3 222 or resid 224 through 259 or (resid REMARK 3 260 and (name N or name CA or name C or REMARK 3 name O or name CB )) or resid 261 through REMARK 3 275)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 26TH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-MAY-26. REMARK 100 THE DEPOSITION ID IS D_1300074143. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-APR-26 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL45XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 81296 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 46.210 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 27.00 REMARK 200 R MERGE (I) : 0.59000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 4.29400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: ALPHAFOLD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M TRIMETHYLAMINE N-OXIDE DIHYDRATE REMARK 280 0.1 M TRIS PH 8.5 20% W/V POLYETHYLENE GLYCOL MONOMETHYL ETHER 2, REMARK 280 000, EVAPORATION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.55100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.96550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.48700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.96550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.55100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.48700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -198.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -10 REMARK 465 ARG A -9 REMARK 465 GLY A -8 REMARK 465 SER A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 GLY A 0 REMARK 465 SER A 1 REMARK 465 MET B -10 REMARK 465 ARG B -9 REMARK 465 GLY B -8 REMARK 465 SER B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 GLY B 0 REMARK 465 SER B 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 35 CG CD OE1 OE2 REMARK 470 GLU A 53 CG CD OE1 OE2 REMARK 470 LYS A 73 CG CD CE NZ REMARK 470 LYS A 80 CG CD CE NZ REMARK 470 LYS A 83 CG CD CE NZ REMARK 470 ASP A 127 CG OD1 OD2 REMARK 470 GLU A 152 CG CD OE1 OE2 REMARK 470 LYS A 212 CG CD CE NZ REMARK 470 ARG A 260 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 265 CG CD OE1 OE2 REMARK 470 GLU B 35 CG CD OE1 OE2 REMARK 470 ARG B 40 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 53 CG CD OE1 OE2 REMARK 470 LYS B 73 CG CD CE NZ REMARK 470 LYS B 80 CG CD CE NZ REMARK 470 LYS B 83 CG CD CE NZ REMARK 470 MET B 126 CG SD CE REMARK 470 ASP B 127 CG OD1 OD2 REMARK 470 GLU B 152 CG CD OE1 OE2 REMARK 470 LYS B 212 CG CD CE NZ REMARK 470 GLU B 265 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 116 155.04 72.54 REMARK 500 ALA A 137 -30.90 -146.28 REMARK 500 MET A 169 -103.18 -99.79 REMARK 500 VAL A 190 -67.00 -98.39 REMARK 500 HIS B 116 154.88 72.43 REMARK 500 ALA B 137 -29.44 -148.05 REMARK 500 MET B 169 -103.33 -99.88 REMARK 500 VAL B 190 -69.06 -97.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 723 DISTANCE = 6.48 ANGSTROMS REMARK 525 HOH B 718 DISTANCE = 6.31 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 113 NE2 REMARK 620 2 GLU A 183 OE1 102.8 REMARK 620 3 HIS B 222 NE2 112.9 95.5 REMARK 620 4 9TY B 301 O05 117.3 135.7 86.1 REMARK 620 5 9TY B 301 O06 100.3 98.2 140.1 58.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 304 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 183 OE2 REMARK 620 2 GLU A 188 OE2 86.6 REMARK 620 3 HOH A 469 O 101.3 85.6 REMARK 620 4 HOH A 496 O 83.8 166.3 86.8 REMARK 620 5 9TY B 301 O01 161.1 94.2 97.5 98.0 REMARK 620 6 9TY B 301 O06 81.1 91.9 176.5 96.1 80.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 222 NE2 REMARK 620 2 9TY A 302 O05 86.1 REMARK 620 3 9TY A 302 O06 140.2 59.3 REMARK 620 4 HIS B 113 NE2 113.5 119.7 101.4 REMARK 620 5 GLU B 183 OE1 93.3 135.0 97.8 101.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 304 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 9TY A 302 O01 REMARK 620 2 9TY A 302 O06 82.4 REMARK 620 3 GLU B 183 OE2 159.3 77.1 REMARK 620 4 GLU B 188 OE2 97.1 92.2 86.3 REMARK 620 5 HOH B 465 O 98.5 176.7 102.2 84.6 REMARK 620 6 HOH B 532 O 98.2 94.8 81.1 163.9 88.3 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 26JC RELATED DB: PDB DBREF1 26TH A 2 275 UNP A0ABY1INU2_9HYPH DBREF2 26TH A A0ABY1INU2 2 275 DBREF1 26TH B 2 275 UNP A0ABY1INU2_9HYPH DBREF2 26TH B A0ABY1INU2 2 275 SEQADV 26TH MET A -10 UNP A0ABY1INU INITIATING METHIONINE SEQADV 26TH ARG A -9 UNP A0ABY1INU EXPRESSION TAG SEQADV 26TH GLY A -8 UNP A0ABY1INU EXPRESSION TAG SEQADV 26TH SER A -7 UNP A0ABY1INU EXPRESSION TAG SEQADV 26TH HIS A -6 UNP A0ABY1INU EXPRESSION TAG SEQADV 26TH HIS A -5 UNP A0ABY1INU EXPRESSION TAG SEQADV 26TH HIS A -4 UNP A0ABY1INU EXPRESSION TAG SEQADV 26TH HIS A -3 UNP A0ABY1INU EXPRESSION TAG SEQADV 26TH HIS A -2 UNP A0ABY1INU EXPRESSION TAG SEQADV 26TH HIS A -1 UNP A0ABY1INU EXPRESSION TAG SEQADV 26TH GLY A 0 UNP A0ABY1INU EXPRESSION TAG SEQADV 26TH SER A 1 UNP A0ABY1INU EXPRESSION TAG SEQADV 26TH MET B -10 UNP A0ABY1INU INITIATING METHIONINE SEQADV 26TH ARG B -9 UNP A0ABY1INU EXPRESSION TAG SEQADV 26TH GLY B -8 UNP A0ABY1INU EXPRESSION TAG SEQADV 26TH SER B -7 UNP A0ABY1INU EXPRESSION TAG SEQADV 26TH HIS B -6 UNP A0ABY1INU EXPRESSION TAG SEQADV 26TH HIS B -5 UNP A0ABY1INU EXPRESSION TAG SEQADV 26TH HIS B -4 UNP A0ABY1INU EXPRESSION TAG SEQADV 26TH HIS B -3 UNP A0ABY1INU EXPRESSION TAG SEQADV 26TH HIS B -2 UNP A0ABY1INU EXPRESSION TAG SEQADV 26TH HIS B -1 UNP A0ABY1INU EXPRESSION TAG SEQADV 26TH GLY B 0 UNP A0ABY1INU EXPRESSION TAG SEQADV 26TH SER B 1 UNP A0ABY1INU EXPRESSION TAG SEQRES 1 A 286 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER THR SEQRES 2 A 286 SER ILE ALA LEU PHE GLY ALA GLY GLY LYS MET GLY TYR SEQRES 3 A 286 ARG LEU ALA SER ASN LEU LYS GLY SER ARG PHE ASP VAL SEQRES 4 A 286 ARG HIS VAL GLU PRO SER GLU ALA GLY ALA LYS ARG LEU SEQRES 5 A 286 LYS ASP GLY LEU GLY PHE ASP CYS VAL PRO ALA GLU ALA SEQRES 6 A 286 ALA LEU ASP GLY ALA GLU VAL VAL VAL LEU ALA VAL PRO SEQRES 7 A 286 ASP THR LEU ILE GLY LYS VAL ALA ASN GLY ILE GLU LYS SEQRES 8 A 286 SER LEU LYS PRO GLY THR ILE VAL VAL VAL LEU ASP ALA SEQRES 9 A 286 ALA ALA PRO PHE ALA GLY HIS LEU PRO ASN ARG PRO ASP SEQRES 10 A 286 LEU THR TYR PHE VAL THR HIS PRO CYS HIS PRO PRO ILE SEQRES 11 A 286 PHE ASN ASP GLU THR GLU MET ASP ALA LYS ARG ASP PHE SEQRES 12 A 286 PHE GLY GLY ILE ALA ALA LYS GLN HIS ILE THR SER ALA SEQRES 13 A 286 LEU MET GLN GLY PRO ASP GLU HIS TYR ALA LEU GLY GLU SEQRES 14 A 286 GLU VAL ALA LYS VAL ILE TRP ALA PRO VAL MET ARG SER SEQRES 15 A 286 HIS ARG VAL THR VAL GLU GLN MET ALA LEU LEU GLU PRO SEQRES 16 A 286 GLY LEU SER GLU THR VAL CYS ALA SER LEU LEU VAL ALA SEQRES 17 A 286 MET LYS GLU ALA MET ASP GLU VAL VAL ALA ARG GLY VAL SEQRES 18 A 286 PRO LYS GLU ALA ALA ARG ASP PHE LEU LEU GLY HIS MET SEQRES 19 A 286 ASN VAL LEU GLY SER VAL ILE PHE GLU GLU THR PRO GLY SEQRES 20 A 286 VAL PHE SER ASP ALA CYS ASN LYS ALA ILE GLU PHE GLY SEQRES 21 A 286 LYS PRO MET LEU MET ARG ASP ASP TRP LYS ARG VAL PHE SEQRES 22 A 286 GLU PRO GLU GLU LEU ALA ALA SER ILE ARG ARG ILE THR SEQRES 1 B 286 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER THR SEQRES 2 B 286 SER ILE ALA LEU PHE GLY ALA GLY GLY LYS MET GLY TYR SEQRES 3 B 286 ARG LEU ALA SER ASN LEU LYS GLY SER ARG PHE ASP VAL SEQRES 4 B 286 ARG HIS VAL GLU PRO SER GLU ALA GLY ALA LYS ARG LEU SEQRES 5 B 286 LYS ASP GLY LEU GLY PHE ASP CYS VAL PRO ALA GLU ALA SEQRES 6 B 286 ALA LEU ASP GLY ALA GLU VAL VAL VAL LEU ALA VAL PRO SEQRES 7 B 286 ASP THR LEU ILE GLY LYS VAL ALA ASN GLY ILE GLU LYS SEQRES 8 B 286 SER LEU LYS PRO GLY THR ILE VAL VAL VAL LEU ASP ALA SEQRES 9 B 286 ALA ALA PRO PHE ALA GLY HIS LEU PRO ASN ARG PRO ASP SEQRES 10 B 286 LEU THR TYR PHE VAL THR HIS PRO CYS HIS PRO PRO ILE SEQRES 11 B 286 PHE ASN ASP GLU THR GLU MET ASP ALA LYS ARG ASP PHE SEQRES 12 B 286 PHE GLY GLY ILE ALA ALA LYS GLN HIS ILE THR SER ALA SEQRES 13 B 286 LEU MET GLN GLY PRO ASP GLU HIS TYR ALA LEU GLY GLU SEQRES 14 B 286 GLU VAL ALA LYS VAL ILE TRP ALA PRO VAL MET ARG SER SEQRES 15 B 286 HIS ARG VAL THR VAL GLU GLN MET ALA LEU LEU GLU PRO SEQRES 16 B 286 GLY LEU SER GLU THR VAL CYS ALA SER LEU LEU VAL ALA SEQRES 17 B 286 MET LYS GLU ALA MET ASP GLU VAL VAL ALA ARG GLY VAL SEQRES 18 B 286 PRO LYS GLU ALA ALA ARG ASP PHE LEU LEU GLY HIS MET SEQRES 19 B 286 ASN VAL LEU GLY SER VAL ILE PHE GLU GLU THR PRO GLY SEQRES 20 B 286 VAL PHE SER ASP ALA CYS ASN LYS ALA ILE GLU PHE GLY SEQRES 21 B 286 LYS PRO MET LEU MET ARG ASP ASP TRP LYS ARG VAL PHE SEQRES 22 B 286 GLU PRO GLU GLU LEU ALA ALA SER ILE ARG ARG ILE THR HET NAD A 301 44 HET 9TY A 302 9 HET ZN A 303 1 HET MN A 304 1 HET 9TY B 301 9 HET NAD B 302 44 HET ZN B 303 1 HET MN B 304 1 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 9TY CYCLOPROPANE-1,1-DICARBOXYLIC ACID HETNAM ZN ZINC ION HETNAM MN MANGANESE (II) ION FORMUL 3 NAD 2(C21 H27 N7 O14 P2) FORMUL 4 9TY 2(C5 H6 O4) FORMUL 5 ZN 2(ZN 2+) FORMUL 6 MN 2(MN 2+) FORMUL 11 HOH *641(H2 O) HELIX 1 AA1 GLY A 11 LYS A 22 1 12 HELIX 2 AA2 SER A 34 GLY A 46 1 13 HELIX 3 AA3 PRO A 51 ASP A 57 1 7 HELIX 4 AA4 PRO A 67 THR A 69 5 3 HELIX 5 AA5 LEU A 70 GLU A 79 1 10 HELIX 6 AA6 LYS A 80 LEU A 82 5 3 HELIX 7 AA7 ALA A 93 ALA A 98 1 6 HELIX 8 AA8 GLU A 125 ARG A 130 1 6 HELIX 9 AA9 PRO A 150 GLU A 152 5 3 HELIX 10 AB1 HIS A 153 TRP A 165 1 13 HELIX 11 AB2 THR A 175 GLU A 183 1 9 HELIX 12 AB3 VAL A 190 ARG A 208 1 19 HELIX 13 AB4 PRO A 211 PHE A 231 1 21 HELIX 14 AB5 SER A 239 MET A 254 1 16 HELIX 15 AB6 ASP A 257 PHE A 262 5 6 HELIX 16 AB7 GLU A 263 THR A 275 1 13 HELIX 17 AB8 GLY B 11 LYS B 22 1 12 HELIX 18 AB9 SER B 34 GLY B 46 1 13 HELIX 19 AC1 PRO B 51 ASP B 57 1 7 HELIX 20 AC2 LEU B 70 GLU B 79 1 10 HELIX 21 AC3 LYS B 80 LEU B 82 5 3 HELIX 22 AC4 ALA B 93 ALA B 98 1 6 HELIX 23 AC5 GLU B 125 ARG B 130 1 6 HELIX 24 AC6 ASP B 151 TRP B 165 1 15 HELIX 25 AC7 THR B 175 GLU B 183 1 9 HELIX 26 AC8 VAL B 190 ARG B 208 1 19 HELIX 27 AC9 PRO B 211 PHE B 231 1 21 HELIX 28 AD1 SER B 239 MET B 254 1 16 HELIX 29 AD2 ASP B 257 PHE B 262 5 6 HELIX 30 AD3 GLU B 263 THR B 275 1 13 SHEET 1 AA1 7 ASP A 27 VAL A 31 0 SHEET 2 AA1 7 SER A 3 PHE A 7 1 N ILE A 4 O ARG A 29 SHEET 3 AA1 7 VAL A 61 LEU A 64 1 O VAL A 63 N PHE A 7 SHEET 4 AA1 7 ILE A 87 VAL A 90 1 O VAL A 89 N VAL A 62 SHEET 5 AA1 7 THR A 108 PRO A 114 1 O THR A 108 N VAL A 88 SHEET 6 AA1 7 GLN A 140 GLN A 148 -1 O ALA A 145 N VAL A 111 SHEET 7 AA1 7 VAL A 168 ARG A 173 1 O HIS A 172 N ILE A 142 SHEET 1 AA2 7 ASP B 27 VAL B 31 0 SHEET 2 AA2 7 SER B 3 PHE B 7 1 N ILE B 4 O ARG B 29 SHEET 3 AA2 7 VAL B 61 LEU B 64 1 O VAL B 63 N PHE B 7 SHEET 4 AA2 7 ILE B 87 VAL B 90 1 O VAL B 89 N VAL B 62 SHEET 5 AA2 7 THR B 108 PRO B 114 1 O THR B 108 N VAL B 88 SHEET 6 AA2 7 GLN B 140 GLN B 148 -1 O ALA B 145 N VAL B 111 SHEET 7 AA2 7 VAL B 168 ARG B 173 1 O HIS B 172 N ILE B 142 LINK NE2 HIS A 113 ZN ZN A 303 1555 1555 2.15 LINK OE1 GLU A 183 ZN ZN A 303 1555 1555 2.06 LINK OE2 GLU A 183 MN MN A 304 1555 1555 2.11 LINK OE2 GLU A 188 MN MN A 304 1555 1555 2.19 LINK NE2 HIS A 222 ZN ZN B 303 1555 1555 2.19 LINK O05 9TY A 302 ZN ZN B 303 1555 1555 2.30 LINK O06 9TY A 302 ZN ZN B 303 1555 1555 2.03 LINK O01 9TY A 302 MN MN B 304 1555 1555 2.18 LINK O06 9TY A 302 MN MN B 304 1555 1555 2.18 LINK ZN ZN A 303 NE2 HIS B 222 1555 1555 2.19 LINK ZN ZN A 303 O05 9TY B 301 1555 1555 2.27 LINK ZN ZN A 303 O06 9TY B 301 1555 1555 2.14 LINK MN MN A 304 O HOH A 469 1555 1555 2.20 LINK MN MN A 304 O HOH A 496 1555 1555 2.15 LINK MN MN A 304 O01 9TY B 301 1555 1555 2.14 LINK MN MN A 304 O06 9TY B 301 1555 1555 2.14 LINK NE2 HIS B 113 ZN ZN B 303 1555 1555 2.15 LINK OE1 GLU B 183 ZN ZN B 303 1555 1555 2.04 LINK OE2 GLU B 183 MN MN B 304 1555 1555 2.19 LINK OE2 GLU B 188 MN MN B 304 1555 1555 2.18 LINK MN MN B 304 O HOH B 465 1555 1555 2.20 LINK MN MN B 304 O HOH B 532 1555 1555 2.17 CISPEP 1 ALA A 166 PRO A 167 0 -1.04 CISPEP 2 GLU A 183 PRO A 184 0 15.09 CISPEP 3 ALA B 166 PRO B 167 0 -0.02 CISPEP 4 GLU B 183 PRO B 184 0 15.09 CRYST1 71.102 74.974 103.931 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014064 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013338 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009622 0.00000 MTRIX1 1 -0.997004 0.076017 0.014282 71.54136 1 MTRIX2 1 0.077244 0.988090 0.133086 -2.75668 1 MTRIX3 1 -0.003995 0.133791 -0.991002 -0.00027 1 CONECT 799 4143 CONECT 1341 4143 CONECT 1342 4144 CONECT 1376 4144 CONECT 1626 4198 CONECT 2843 4198 CONECT 3382 4198 CONECT 3383 4199 CONECT 3417 4199 CONECT 3664 4143 CONECT 4090 4091 4092 4093 4112 CONECT 4091 4090 CONECT 4092 4090 CONECT 4093 4090 4094 CONECT 4094 4093 4095 CONECT 4095 4094 4096 4097 CONECT 4096 4095 4101 CONECT 4097 4095 4098 4099 CONECT 4098 4097 CONECT 4099 4097 4100 4101 CONECT 4100 4099 CONECT 4101 4096 4099 4102 CONECT 4102 4101 4103 4111 CONECT 4103 4102 4104 CONECT 4104 4103 4105 CONECT 4105 4104 4106 4111 CONECT 4106 4105 4107 4108 CONECT 4107 4106 CONECT 4108 4106 4109 CONECT 4109 4108 4110 CONECT 4110 4109 4111 CONECT 4111 4102 4105 4110 CONECT 4112 4090 4113 CONECT 4113 4112 4114 4115 4116 CONECT 4114 4113 CONECT 4115 4113 CONECT 4116 4113 4117 CONECT 4117 4116 4118 CONECT 4118 4117 4119 4120 CONECT 4119 4118 4124 CONECT 4120 4118 4121 4122 CONECT 4121 4120 CONECT 4122 4120 4123 4124 CONECT 4123 4122 CONECT 4124 4119 4122 4125 CONECT 4125 4124 4126 4133 CONECT 4126 4125 4127 CONECT 4127 4126 4128 4131 CONECT 4128 4127 4129 4130 CONECT 4129 4128 CONECT 4130 4128 CONECT 4131 4127 4132 CONECT 4132 4131 4133 CONECT 4133 4125 4132 CONECT 4134 4135 4139 4142 CONECT 4135 4134 4136 4137 4138 CONECT 4136 4135 4140 4141 CONECT 4137 4135 4138 CONECT 4138 4135 4137 CONECT 4139 4134 4199 CONECT 4140 4136 4198 CONECT 4141 4136 4198 4199 CONECT 4142 4134 CONECT 4143 799 1341 3664 4151 CONECT 4143 4152 CONECT 4144 1342 1376 4150 4152 CONECT 4144 4268 4295 CONECT 4145 4146 4150 4153 CONECT 4146 4145 4147 4148 4149 CONECT 4147 4146 4151 4152 CONECT 4148 4146 4149 CONECT 4149 4146 4148 CONECT 4150 4144 4145 CONECT 4151 4143 4147 CONECT 4152 4143 4144 4147 CONECT 4153 4145 CONECT 4154 4155 4156 4157 4176 CONECT 4155 4154 CONECT 4156 4154 CONECT 4157 4154 4158 CONECT 4158 4157 4159 CONECT 4159 4158 4160 4161 CONECT 4160 4159 4165 CONECT 4161 4159 4162 4163 CONECT 4162 4161 CONECT 4163 4161 4164 4165 CONECT 4164 4163 CONECT 4165 4160 4163 4166 CONECT 4166 4165 4167 4175 CONECT 4167 4166 4168 CONECT 4168 4167 4169 CONECT 4169 4168 4170 4175 CONECT 4170 4169 4171 4172 CONECT 4171 4170 CONECT 4172 4170 4173 CONECT 4173 4172 4174 CONECT 4174 4173 4175 CONECT 4175 4166 4169 4174 CONECT 4176 4154 4177 CONECT 4177 4176 4178 4179 4180 CONECT 4178 4177 CONECT 4179 4177 CONECT 4180 4177 4181 CONECT 4181 4180 4182 CONECT 4182 4181 4183 4184 CONECT 4183 4182 4188 CONECT 4184 4182 4185 4186 CONECT 4185 4184 CONECT 4186 4184 4187 4188 CONECT 4187 4186 CONECT 4188 4183 4186 4189 CONECT 4189 4188 4190 4197 CONECT 4190 4189 4191 CONECT 4191 4190 4192 4195 CONECT 4192 4191 4193 4194 CONECT 4193 4192 CONECT 4194 4192 CONECT 4195 4191 4196 CONECT 4196 4195 4197 CONECT 4197 4189 4196 CONECT 4198 1626 2843 3382 4140 CONECT 4198 4141 CONECT 4199 3383 3417 4139 4141 CONECT 4199 4587 4654 CONECT 4268 4144 CONECT 4295 4144 CONECT 4587 4199 CONECT 4654 4199 MASTER 417 0 8 30 14 0 0 9 4820 2 128 44 END