data_271D # _entry.id 271D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 271D pdb_0000271d 10.2210/pdb271d/pdb RCSB BDL075 ? ? WWPDB D_1000177683 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1996-08-28 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2012-02-29 5 'Structure model' 1 4 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' Other 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' chem_comp_atom 2 5 'Structure model' chem_comp_bond 3 5 'Structure model' database_2 4 5 'Structure model' pdbx_struct_conn_angle 5 5 'Structure model' struct_conn 6 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 7 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 8 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 9 5 'Structure model' '_pdbx_struct_conn_angle.value' 10 5 'Structure model' '_struct_conn.pdbx_dist_value' 11 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 12 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 13 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 14 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 15 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 16 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 271D _pdbx_database_status.recvd_initial_deposition_date 1996-07-12 _pdbx_database_status.deposit_site NDB _pdbx_database_status.process_site NDB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 265D unspecified . PDB 266D unspecified . PDB 267D unspecified . PDB 268D unspecified . PDB 269D unspecified . PDB 270D unspecified . # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Partridge, B.L.' 1 'Salisbury, S.A.' 2 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI 1 'Structural Studies on Nucleic Acids' 'Thesis, University of Cambridge' ? ? ? 1996 ? UK ? 2108 ? ? ? primary ? 'To be Published' ? ? ? 1996 ? ? ? 0353 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Partridge, B.L.' 1 ? primary 'Salisbury, S.A.' 2 ? 1 'Partridge, B.L.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*GP*CP*GP*AP*AP*UP*UP*CP*GP*CP*G)-3') ; 3635.340 2 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 3 water nat water 18.015 125 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DC)(DG)(DA)(DA)(DU)(DU)(DC)(DG)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGCGAAUUCGCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DC n 1 4 DG n 1 5 DA n 1 6 DA n 1 7 DU n 1 8 DU n 1 9 DC n 1 10 DG n 1 11 DC n 1 12 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DU 'DNA linking' y "2'-DEOXYURIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O8 P' 308.182 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DA 5 5 5 DA A A . n A 1 6 DA 6 6 6 DA A A . n A 1 7 DU 7 7 7 DU U A . n A 1 8 DU 8 8 8 DU U A . n A 1 9 DC 9 9 9 DC C A . n A 1 10 DG 10 10 10 DG G A . n A 1 11 DC 11 11 11 DC C A . n A 1 12 DG 12 12 12 DG G A . n B 1 1 DC 1 13 13 DC C B . n B 1 2 DG 2 14 14 DG G B . n B 1 3 DC 3 15 15 DC C B . n B 1 4 DG 4 16 16 DG G B . n B 1 5 DA 5 17 17 DA A B . n B 1 6 DA 6 18 18 DA A B . n B 1 7 DU 7 19 19 DU U B . n B 1 8 DU 8 20 20 DU U B . n B 1 9 DC 9 21 21 DC C B . n B 1 10 DG 10 22 22 DG G B . n B 1 11 DC 11 23 23 DC C B . n B 1 12 DG 12 24 24 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG 1 25 25 MG MO6 A . D 3 HOH 1 26 26 HOH HOH A . D 3 HOH 2 27 27 HOH HOH A . D 3 HOH 3 30 30 HOH HOH A . D 3 HOH 4 31 31 HOH HOH A . D 3 HOH 5 32 32 HOH HOH A . D 3 HOH 6 34 34 HOH HOH A . D 3 HOH 7 36 36 HOH HOH A . D 3 HOH 8 39 39 HOH HOH A . D 3 HOH 9 41 41 HOH HOH A . D 3 HOH 10 42 42 HOH HOH A . D 3 HOH 11 43 43 HOH HOH A . D 3 HOH 12 45 45 HOH HOH A . D 3 HOH 13 47 47 HOH HOH A . D 3 HOH 14 50 50 HOH HOH A . D 3 HOH 15 52 52 HOH HOH A . D 3 HOH 16 53 53 HOH HOH A . D 3 HOH 17 56 56 HOH HOH A . D 3 HOH 18 57 57 HOH HOH A . D 3 HOH 19 60 60 HOH HOH A . D 3 HOH 20 61 61 HOH HOH A . D 3 HOH 21 63 63 HOH HOH A . D 3 HOH 22 64 64 HOH HOH A . D 3 HOH 23 65 65 HOH HOH A . D 3 HOH 24 66 66 HOH HOH A . D 3 HOH 25 67 67 HOH HOH A . D 3 HOH 26 69 69 HOH HOH A . D 3 HOH 27 70 70 HOH HOH A . D 3 HOH 28 71 71 HOH HOH A . D 3 HOH 29 72 72 HOH HOH A . D 3 HOH 30 73 73 HOH HOH A . D 3 HOH 31 75 75 HOH HOH A . D 3 HOH 32 77 77 HOH HOH A . D 3 HOH 33 78 78 HOH HOH A . D 3 HOH 34 79 79 HOH HOH A . D 3 HOH 35 81 81 HOH HOH A . D 3 HOH 36 83 83 HOH HOH A . D 3 HOH 37 85 85 HOH HOH A . D 3 HOH 38 90 90 HOH HOH A . D 3 HOH 39 91 91 HOH HOH A . D 3 HOH 40 93 93 HOH HOH A . D 3 HOH 41 94 94 HOH HOH A . D 3 HOH 42 97 97 HOH HOH A . D 3 HOH 43 98 98 HOH HOH A . D 3 HOH 44 99 99 HOH HOH A . D 3 HOH 45 100 100 HOH HOH A . D 3 HOH 46 101 101 HOH HOH A . D 3 HOH 47 102 102 HOH HOH A . D 3 HOH 48 103 103 HOH HOH A . D 3 HOH 49 104 104 HOH HOH A . D 3 HOH 50 106 106 HOH HOH A . D 3 HOH 51 107 107 HOH HOH A . D 3 HOH 52 114 114 HOH HOH A . D 3 HOH 53 116 116 HOH HOH A . D 3 HOH 54 117 117 HOH HOH A . D 3 HOH 55 119 119 HOH HOH A . D 3 HOH 56 121 121 HOH HOH A . D 3 HOH 57 122 122 HOH HOH A . D 3 HOH 58 123 123 HOH HOH A . D 3 HOH 59 129 129 HOH HOH A . D 3 HOH 60 130 130 HOH HOH A . D 3 HOH 61 131 131 HOH HOH A . D 3 HOH 62 132 132 HOH HOH A . D 3 HOH 63 134 134 HOH HOH A . D 3 HOH 64 137 137 HOH HOH A . D 3 HOH 65 140 140 HOH HOH A . D 3 HOH 66 144 144 HOH HOH A . D 3 HOH 67 145 25 HOH MO6 A . D 3 HOH 68 147 25 HOH MO6 A . D 3 HOH 69 149 25 HOH MO6 A . E 3 HOH 1 28 28 HOH HOH B . E 3 HOH 2 29 29 HOH HOH B . E 3 HOH 3 33 33 HOH HOH B . E 3 HOH 4 35 35 HOH HOH B . E 3 HOH 5 37 37 HOH HOH B . E 3 HOH 6 38 38 HOH HOH B . E 3 HOH 7 40 40 HOH HOH B . E 3 HOH 8 44 44 HOH HOH B . E 3 HOH 9 46 46 HOH HOH B . E 3 HOH 10 48 48 HOH HOH B . E 3 HOH 11 49 49 HOH HOH B . E 3 HOH 12 51 51 HOH HOH B . E 3 HOH 13 54 54 HOH HOH B . E 3 HOH 14 55 55 HOH HOH B . E 3 HOH 15 58 58 HOH HOH B . E 3 HOH 16 59 59 HOH HOH B . E 3 HOH 17 62 62 HOH HOH B . E 3 HOH 18 68 68 HOH HOH B . E 3 HOH 19 74 74 HOH HOH B . E 3 HOH 20 76 76 HOH HOH B . E 3 HOH 21 80 80 HOH HOH B . E 3 HOH 22 82 82 HOH HOH B . E 3 HOH 23 84 84 HOH HOH B . E 3 HOH 24 86 86 HOH HOH B . E 3 HOH 25 87 87 HOH HOH B . E 3 HOH 26 88 88 HOH HOH B . E 3 HOH 27 89 89 HOH HOH B . E 3 HOH 28 92 92 HOH HOH B . E 3 HOH 29 95 95 HOH HOH B . E 3 HOH 30 96 96 HOH HOH B . E 3 HOH 31 105 105 HOH HOH B . E 3 HOH 32 108 108 HOH HOH B . E 3 HOH 33 109 109 HOH HOH B . E 3 HOH 34 110 110 HOH HOH B . E 3 HOH 35 111 111 HOH HOH B . E 3 HOH 36 112 112 HOH HOH B . E 3 HOH 37 113 113 HOH HOH B . E 3 HOH 38 115 115 HOH HOH B . E 3 HOH 39 118 118 HOH HOH B . E 3 HOH 40 120 120 HOH HOH B . E 3 HOH 41 124 124 HOH HOH B . E 3 HOH 42 125 125 HOH HOH B . E 3 HOH 43 126 126 HOH HOH B . E 3 HOH 44 127 127 HOH HOH B . E 3 HOH 45 128 128 HOH HOH B . E 3 HOH 46 133 133 HOH HOH B . E 3 HOH 47 135 135 HOH HOH B . E 3 HOH 48 136 136 HOH HOH B . E 3 HOH 49 138 138 HOH HOH B . E 3 HOH 50 139 139 HOH HOH B . E 3 HOH 51 141 141 HOH HOH B . E 3 HOH 52 142 142 HOH HOH B . E 3 HOH 53 143 143 HOH HOH B . E 3 HOH 54 146 25 HOH MO6 B . E 3 HOH 55 148 25 HOH MO6 B . E 3 HOH 56 150 25 HOH MO6 B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal NUCLSQ refinement . ? 1 RIGAKU 'data reduction' . ? 2 RIGAKU 'data scaling' . ? 3 # _cell.entry_id 271D _cell.length_a 25.427 _cell.length_b 39.744 _cell.length_c 65.255 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 271D _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # _exptl.entry_id 271D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 45.75 _exptl_crystal.density_Matthews 2.27 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.10 _exptl_crystal_grow.pdbx_details 'pH 7.10' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 'NA CACODYLATE' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IIC' _diffrn_detector.pdbx_collection_date 1995-03-29 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator GRAPHITE _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 271D _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 39.800 _reflns.d_resolution_high 2.020 _reflns.number_obs 13706 _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs 0.0704000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _refine.entry_id 271D _refine.ls_number_reflns_obs 4473 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 4.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high 2.020 _refine.ls_percent_reflns_obs 92.900 _refine.ls_R_factor_obs 0.1760000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ;STANDARD R-FACTOR = 17.6% ERROR R-FACTOR = 3.8% WEIGHTED R-FACTOR = 17.3% NUMBER OF REFLECTIONS INCLUDED = 13706 AVERAGE |FO-FC| DISCREPANCY = 26.29 AVERAGE WEIGHTED |FO-FC| DISCREPANCY = -0.03 CORRELATION COEFFICIENT = 100.4% RESOLUTION BREAKDOWN "ALL" R FACTOR = 18.4% ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MIR _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_overall_phase_error ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 482 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 125 _refine_hist.number_atoms_total 608 _refine_hist.d_res_high 2.020 _refine_hist.d_res_low . # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function n_bond_d 0.030 0.015 ? ? 'X-RAY DIFFRACTION' ? n_angle_d 0.053 0.025 ? ? 'X-RAY DIFFRACTION' ? n_planar_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_hb_or_metal_coord ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_it 8.764 7.500 ? ? 'X-RAY DIFFRACTION' ? n_sugar_angle_it 10.030 7.500 ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_it 11.116 7.500 ? ? 'X-RAY DIFFRACTION' ? n_phos_angle_it 10.215 7.500 ? ? 'X-RAY DIFFRACTION' ? n_bond_angle_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_dihedral_angle_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_impr_tor ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_d 0.041 0.015 ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_angle_d 0.063 0.025 ? ? 'X-RAY DIFFRACTION' ? n_plane_restr 0.033 0.015 ? ? 'X-RAY DIFFRACTION' ? n_chiral_restr 0.067 0.040 ? ? 'X-RAY DIFFRACTION' ? n_singtor_nbd 0.154 0.063 ? ? 'X-RAY DIFFRACTION' ? n_multtor_nbd 0.241 0.063 ? ? 'X-RAY DIFFRACTION' ? n_xhyhbond_nbd 0.388 0.063 ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 271D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 271D _struct.title 'STRUCTURAL STUDIES ON NUCLEIC ACIDS' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 271D _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'B-DNA, DOUBLE HELIX, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 271D _struct_ref.pdbx_db_accession 271D _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 271D A 1 ? 12 ? 271D 1 ? 12 ? 1 12 2 1 271D B 1 ? 12 ? 271D 13 ? 24 ? 13 24 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? C MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 25 A HOH 145 1_555 ? ? ? ? ? ? ? 1.973 ? ? metalc2 metalc ? ? C MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 25 A HOH 147 1_555 ? ? ? ? ? ? ? 1.999 ? ? metalc3 metalc ? ? C MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 25 A HOH 149 1_555 ? ? ? ? ? ? ? 2.000 ? ? metalc4 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 25 B HOH 146 1_555 ? ? ? ? ? ? ? 1.988 ? ? metalc5 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 25 B HOH 148 1_555 ? ? ? ? ? ? ? 2.041 ? ? metalc6 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 25 B HOH 150 1_555 ? ? ? ? ? ? ? 2.000 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 12 N1 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 12 O6 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 12 N2 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 11 N3 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 11 O2 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 11 N4 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DU 8 N3 ? ? A DA 5 B DU 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DU 8 O4 ? ? A DA 5 B DU 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DU 7 N3 ? ? A DA 6 B DU 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DU 7 O4 ? ? A DA 6 B DU 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DU 7 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DU 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DU 7 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DU 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DU 8 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DU 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DU 8 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DU 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? D HOH . ? A HOH 145 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? D HOH . ? A HOH 147 ? 1_555 89.0 ? 2 O ? D HOH . ? A HOH 145 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? D HOH . ? A HOH 149 ? 1_555 86.1 ? 3 O ? D HOH . ? A HOH 147 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? D HOH . ? A HOH 149 ? 1_555 92.6 ? 4 O ? D HOH . ? A HOH 145 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? E HOH . ? B HOH 146 ? 1_555 174.7 ? 5 O ? D HOH . ? A HOH 147 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? E HOH . ? B HOH 146 ? 1_555 88.5 ? 6 O ? D HOH . ? A HOH 149 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? E HOH . ? B HOH 146 ? 1_555 89.4 ? 7 O ? D HOH . ? A HOH 145 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? E HOH . ? B HOH 148 ? 1_555 94.7 ? 8 O ? D HOH . ? A HOH 147 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? E HOH . ? B HOH 148 ? 1_555 175.6 ? 9 O ? D HOH . ? A HOH 149 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? E HOH . ? B HOH 148 ? 1_555 85.2 ? 10 O ? E HOH . ? B HOH 146 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? E HOH . ? B HOH 148 ? 1_555 87.6 ? 11 O ? D HOH . ? A HOH 145 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? E HOH . ? B HOH 150 ? 1_555 95.1 ? 12 O ? D HOH . ? A HOH 147 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? E HOH . ? B HOH 150 ? 1_555 89.6 ? 13 O ? D HOH . ? A HOH 149 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? E HOH . ? B HOH 150 ? 1_555 177.5 ? 14 O ? E HOH . ? B HOH 146 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? E HOH . ? B HOH 150 ? 1_555 89.6 ? 15 O ? E HOH . ? B HOH 148 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? E HOH . ? B HOH 150 ? 1_555 92.5 ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id MG _struct_site.pdbx_auth_seq_id 25 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 6 _struct_site.details 'BINDING SITE FOR RESIDUE MG A 25' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 HOH D . ? HOH A 145 . ? 1_555 ? 2 AC1 6 HOH D . ? HOH A 147 . ? 1_555 ? 3 AC1 6 HOH D . ? HOH A 149 . ? 1_555 ? 4 AC1 6 HOH E . ? HOH B 146 . ? 1_555 ? 5 AC1 6 HOH E . ? HOH B 148 . ? 1_555 ? 6 AC1 6 HOH E . ? HOH B 150 . ? 1_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 90 ? ? O A HOH 99 ? ? 2.12 2 1 N6 B DA 18 ? ? O B HOH 51 ? ? 2.18 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 66 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 81 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 3_645 _pdbx_validate_symm_contact.dist 2.17 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C2 A DC 1 ? ? O2 A DC 1 ? ? 1.179 1.240 -0.061 0.009 N 2 1 "O4'" A DG 2 ? ? "C4'" A DG 2 ? ? 1.386 1.446 -0.060 0.010 N 3 1 "O3'" A DG 2 ? ? "C3'" A DG 2 ? ? 1.372 1.419 -0.047 0.006 N 4 1 N7 A DG 2 ? ? C8 A DG 2 ? ? 1.351 1.305 0.046 0.006 N 5 1 N9 A DG 2 ? ? C4 A DG 2 ? ? 1.435 1.375 0.060 0.008 N 6 1 P A DC 3 ? ? "O5'" A DC 3 ? ? 1.670 1.593 0.077 0.010 N 7 1 "O3'" A DC 3 ? ? "C3'" A DC 3 ? ? 1.381 1.419 -0.038 0.006 N 8 1 C4 A DC 3 ? ? N4 A DC 3 ? ? 1.401 1.335 0.066 0.009 N 9 1 N1 A DC 3 ? ? C2 A DC 3 ? ? 1.325 1.397 -0.072 0.010 N 10 1 N1 A DC 3 ? ? C6 A DC 3 ? ? 1.413 1.367 0.046 0.006 N 11 1 C4 A DC 3 ? ? C5 A DC 3 ? ? 1.359 1.425 -0.066 0.008 N 12 1 N7 A DA 5 ? ? C8 A DA 5 ? ? 1.377 1.311 0.066 0.007 N 13 1 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? 1.487 1.420 0.067 0.011 N 14 1 N3 A DA 6 ? ? C4 A DA 6 ? ? 1.386 1.344 0.042 0.006 N 15 1 C4 A DA 6 ? ? C5 A DA 6 ? ? 1.327 1.383 -0.056 0.007 N 16 1 C5 A DA 6 ? ? C6 A DA 6 ? ? 1.471 1.406 0.065 0.009 N 17 1 C5 A DA 6 ? ? N7 A DA 6 ? ? 1.424 1.388 0.036 0.006 N 18 1 N9 A DA 6 ? ? C4 A DA 6 ? ? 1.437 1.374 0.063 0.006 N 19 1 "C2'" A DU 7 ? ? "C1'" A DU 7 ? ? 1.582 1.519 0.063 0.010 N 20 1 C2 A DU 8 ? ? O2 A DU 8 ? ? 1.312 1.219 0.093 0.009 N 21 1 P A DC 9 ? ? "O5'" A DC 9 ? ? 1.532 1.593 -0.061 0.010 N 22 1 "O4'" A DC 9 ? ? "C4'" A DC 9 ? ? 1.368 1.446 -0.078 0.010 N 23 1 "O3'" A DC 9 ? ? "C3'" A DC 9 ? ? 1.378 1.419 -0.041 0.006 N 24 1 N1 A DC 9 ? ? C6 A DC 9 ? ? 1.404 1.367 0.037 0.006 N 25 1 C5 A DC 9 ? ? C6 A DC 9 ? ? 1.410 1.339 0.071 0.008 N 26 1 C6 A DG 10 ? ? N1 A DG 10 ? ? 1.344 1.391 -0.047 0.007 N 27 1 N7 A DG 10 ? ? C8 A DG 10 ? ? 1.263 1.305 -0.042 0.006 N 28 1 C8 A DG 10 ? ? N9 A DG 10 ? ? 1.328 1.374 -0.046 0.007 N 29 1 "O3'" A DG 10 ? ? P A DC 11 ? ? 1.692 1.607 0.085 0.012 Y 30 1 "O4'" A DC 11 ? ? "C4'" A DC 11 ? ? 1.361 1.446 -0.085 0.010 N 31 1 N1 A DC 11 ? ? C6 A DC 11 ? ? 1.429 1.367 0.062 0.006 N 32 1 P A DG 12 ? ? "O5'" A DG 12 ? ? 1.659 1.593 0.066 0.010 N 33 1 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? 1.533 1.420 0.113 0.011 N 34 1 "O4'" B DG 14 ? ? "C1'" B DG 14 ? ? 1.488 1.420 0.068 0.011 N 35 1 "O3'" B DG 14 ? ? "C3'" B DG 14 ? ? 1.373 1.419 -0.046 0.006 N 36 1 N1 B DG 14 ? ? C2 B DG 14 ? ? 1.316 1.373 -0.057 0.008 N 37 1 C2 B DG 14 ? ? N3 B DG 14 ? ? 1.374 1.323 0.051 0.008 N 38 1 "O4'" B DC 15 ? ? "C1'" B DC 15 ? ? 1.529 1.420 0.109 0.011 N 39 1 C2 B DA 17 ? ? N3 B DA 17 ? ? 1.395 1.331 0.064 0.009 N 40 1 N7 B DA 17 ? ? C8 B DA 17 ? ? 1.353 1.311 0.042 0.007 N 41 1 N9 B DA 17 ? ? C4 B DA 17 ? ? 1.326 1.374 -0.048 0.006 N 42 1 "O4'" B DA 18 ? ? "C4'" B DA 18 ? ? 1.377 1.446 -0.069 0.010 N 43 1 N7 B DA 18 ? ? C8 B DA 18 ? ? 1.383 1.311 0.072 0.007 N 44 1 N9 B DA 18 ? ? C4 B DA 18 ? ? 1.463 1.374 0.089 0.006 N 45 1 "O4'" B DU 19 ? ? "C1'" B DU 19 ? ? 1.505 1.420 0.085 0.011 N 46 1 "O4'" B DU 19 ? ? "C4'" B DU 19 ? ? 1.380 1.446 -0.066 0.010 N 47 1 P B DU 20 ? ? "O5'" B DU 20 ? ? 1.705 1.593 0.112 0.010 N 48 1 "O4'" B DU 20 ? ? "C1'" B DU 20 ? ? 1.496 1.420 0.076 0.011 N 49 1 "O4'" B DU 20 ? ? "C4'" B DU 20 ? ? 1.352 1.446 -0.094 0.010 N 50 1 P B DC 21 ? ? "O5'" B DC 21 ? ? 1.657 1.593 0.064 0.010 N 51 1 "O4'" B DC 21 ? ? "C4'" B DC 21 ? ? 1.373 1.446 -0.073 0.010 N 52 1 N1 B DC 21 ? ? C6 B DC 21 ? ? 1.451 1.367 0.084 0.006 N 53 1 C4 B DG 22 ? ? C5 B DG 22 ? ? 1.428 1.379 0.049 0.007 N 54 1 N7 B DG 22 ? ? C8 B DG 22 ? ? 1.360 1.305 0.055 0.006 N 55 1 "O3'" B DC 23 ? ? P B DG 24 ? ? 1.699 1.607 0.092 0.012 Y 56 1 C5 B DG 24 ? ? N7 B DG 24 ? ? 1.457 1.388 0.069 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" A DC 1 ? ? "C5'" A DC 1 ? ? "C4'" A DC 1 ? ? 102.43 109.40 -6.97 0.80 N 2 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.93 108.30 2.63 0.30 N 3 1 N3 A DC 1 ? ? C4 A DC 1 ? ? C5 A DC 1 ? ? 118.47 121.90 -3.43 0.40 N 4 1 C4 A DC 1 ? ? C5 A DC 1 ? ? C6 A DC 1 ? ? 120.68 117.40 3.28 0.50 N 5 1 N1 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 122.54 118.90 3.64 0.60 N 6 1 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 117.50 121.90 -4.40 0.70 N 7 1 "C3'" A DC 1 ? ? "O3'" A DC 1 ? ? P A DG 2 ? ? 138.79 119.70 19.09 1.20 Y 8 1 "O5'" A DG 2 ? ? "C5'" A DG 2 ? ? "C4'" A DG 2 ? ? 103.87 109.40 -5.53 0.80 N 9 1 "O4'" A DG 2 ? ? "C4'" A DG 2 ? ? "C3'" A DG 2 ? ? 101.32 104.50 -3.18 0.40 N 10 1 "C5'" A DG 2 ? ? "C4'" A DG 2 ? ? "O4'" A DG 2 ? ? 117.40 109.80 7.60 1.10 N 11 1 "C1'" A DG 2 ? ? "O4'" A DG 2 ? ? "C4'" A DG 2 ? ? 116.93 110.30 6.63 0.70 N 12 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 114.98 108.30 6.68 0.30 N 13 1 C6 A DG 2 ? ? N1 A DG 2 ? ? C2 A DG 2 ? ? 118.54 125.10 -6.56 0.60 N 14 1 N1 A DG 2 ? ? C2 A DG 2 ? ? N3 A DG 2 ? ? 129.79 123.90 5.89 0.60 N 15 1 C5 A DG 2 ? ? C6 A DG 2 ? ? N1 A DG 2 ? ? 116.67 111.50 5.17 0.50 N 16 1 N7 A DG 2 ? ? C8 A DG 2 ? ? N9 A DG 2 ? ? 116.38 113.10 3.28 0.50 N 17 1 C8 A DG 2 ? ? N9 A DG 2 ? ? C4 A DG 2 ? ? 103.27 106.40 -3.13 0.40 N 18 1 N3 A DG 2 ? ? C2 A DG 2 ? ? N2 A DG 2 ? ? 112.70 119.90 -7.20 0.70 N 19 1 N1 A DG 2 ? ? C6 A DG 2 ? ? O6 A DG 2 ? ? 115.21 119.90 -4.69 0.60 N 20 1 C8 A DG 2 ? ? N9 A DG 2 ? ? "C1'" A DG 2 ? ? 136.19 127.00 9.19 1.30 N 21 1 "C3'" A DG 2 ? ? "O3'" A DG 2 ? ? P A DC 3 ? ? 132.73 119.70 13.03 1.20 Y 22 1 C2 A DC 3 ? ? N3 A DC 3 ? ? C4 A DC 3 ? ? 123.57 119.90 3.67 0.50 N 23 1 N3 A DC 3 ? ? C4 A DC 3 ? ? N4 A DC 3 ? ? 112.60 118.00 -5.40 0.70 N 24 1 C5 A DC 3 ? ? C4 A DC 3 ? ? N4 A DC 3 ? ? 125.96 120.20 5.76 0.70 N 25 1 "C3'" A DC 3 ? ? "O3'" A DC 3 ? ? P A DG 4 ? ? 128.33 119.70 8.63 1.20 Y 26 1 "O5'" A DG 4 ? ? "C5'" A DG 4 ? ? "C4'" A DG 4 ? ? 100.32 109.40 -9.08 0.80 N 27 1 P A DG 4 ? ? "O5'" A DG 4 ? ? "C5'" A DG 4 ? ? 108.90 120.90 -12.00 1.60 N 28 1 "C3'" A DG 4 ? ? "C2'" A DG 4 ? ? "C1'" A DG 4 ? ? 96.82 102.40 -5.58 0.80 N 29 1 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? "C2'" A DG 4 ? ? 112.02 106.80 5.22 0.50 N 30 1 C6 A DG 4 ? ? N1 A DG 4 ? ? C2 A DG 4 ? ? 120.30 125.10 -4.80 0.60 N 31 1 C5 A DG 4 ? ? C6 A DG 4 ? ? N1 A DG 4 ? ? 114.52 111.50 3.02 0.50 N 32 1 C4 A DG 4 ? ? C5 A DG 4 ? ? N7 A DG 4 ? ? 108.40 110.80 -2.40 0.40 N 33 1 N3 A DG 4 ? ? C2 A DG 4 ? ? N2 A DG 4 ? ? 114.01 119.90 -5.89 0.70 N 34 1 N1 A DG 4 ? ? C6 A DG 4 ? ? O6 A DG 4 ? ? 115.17 119.90 -4.73 0.60 N 35 1 "C3'" A DG 4 ? ? "O3'" A DG 4 ? ? P A DA 5 ? ? 128.62 119.70 8.92 1.20 Y 36 1 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? "C2'" A DA 5 ? ? 100.22 105.90 -5.68 0.80 N 37 1 C6 A DA 5 ? ? N1 A DA 5 ? ? C2 A DA 5 ? ? 125.56 118.60 6.96 0.60 N 38 1 N1 A DA 5 ? ? C2 A DA 5 ? ? N3 A DA 5 ? ? 123.61 129.30 -5.69 0.50 N 39 1 C5 A DA 5 ? ? C6 A DA 5 ? ? N1 A DA 5 ? ? 113.28 117.70 -4.42 0.50 N 40 1 N9 A DA 5 ? ? C4 A DA 5 ? ? C5 A DA 5 ? ? 108.43 105.80 2.63 0.40 N 41 1 "C3'" A DA 5 ? ? "O3'" A DA 5 ? ? P A DA 6 ? ? 135.55 119.70 15.85 1.20 Y 42 1 OP1 A DA 6 ? ? P A DA 6 ? ? OP2 A DA 6 ? ? 108.99 119.60 -10.61 1.50 N 43 1 "O5'" A DA 6 ? ? P A DA 6 ? ? OP2 A DA 6 ? ? 123.49 110.70 12.79 1.20 N 44 1 "O5'" A DA 6 ? ? "C5'" A DA 6 ? ? "C4'" A DA 6 ? ? 103.17 109.40 -6.23 0.80 N 45 1 C6 A DA 6 ? ? N1 A DA 6 ? ? C2 A DA 6 ? ? 128.24 118.60 9.64 0.60 N 46 1 N1 A DA 6 ? ? C2 A DA 6 ? ? N3 A DA 6 ? ? 123.51 129.30 -5.79 0.50 N 47 1 N3 A DA 6 ? ? C4 A DA 6 ? ? C5 A DA 6 ? ? 131.07 126.80 4.27 0.70 N 48 1 C5 A DA 6 ? ? C6 A DA 6 ? ? N1 A DA 6 ? ? 111.29 117.70 -6.41 0.50 N 49 1 C4 A DA 6 ? ? C5 A DA 6 ? ? N7 A DA 6 ? ? 114.16 110.70 3.46 0.50 N 50 1 C5 A DA 6 ? ? N7 A DA 6 ? ? C8 A DA 6 ? ? 99.67 103.90 -4.23 0.50 N 51 1 N7 A DA 6 ? ? C8 A DA 6 ? ? N9 A DA 6 ? ? 117.31 113.80 3.51 0.50 N 52 1 N1 A DA 6 ? ? C6 A DA 6 ? ? N6 A DA 6 ? ? 127.82 118.60 9.22 0.60 N 53 1 "C3'" A DA 6 ? ? "O3'" A DA 6 ? ? P A DU 7 ? ? 127.57 119.70 7.87 1.20 Y 54 1 "O3'" A DA 6 ? ? P A DU 7 ? ? OP1 A DU 7 ? ? 118.11 110.50 7.61 1.10 Y 55 1 OP1 A DU 7 ? ? P A DU 7 ? ? OP2 A DU 7 ? ? 102.14 119.60 -17.46 1.50 N 56 1 "O5'" A DU 7 ? ? "C5'" A DU 7 ? ? "C4'" A DU 7 ? ? 97.58 109.40 -11.82 0.80 N 57 1 N3 A DU 7 ? ? C4 A DU 7 ? ? C5 A DU 7 ? ? 119.08 114.60 4.48 0.60 N 58 1 C4 A DU 7 ? ? C5 A DU 7 ? ? C6 A DU 7 ? ? 114.20 119.70 -5.50 0.60 N 59 1 N3 A DU 7 ? ? C4 A DU 7 ? ? O4 A DU 7 ? ? 113.07 119.40 -6.33 0.70 N 60 1 OP1 A DU 8 ? ? P A DU 8 ? ? OP2 A DU 8 ? ? 108.67 119.60 -10.93 1.50 N 61 1 "O5'" A DU 8 ? ? "C5'" A DU 8 ? ? "C4'" A DU 8 ? ? 102.83 109.40 -6.57 0.80 N 62 1 N1 A DU 8 ? ? C2 A DU 8 ? ? N3 A DU 8 ? ? 122.53 114.90 7.63 0.60 N 63 1 C2 A DU 8 ? ? N3 A DU 8 ? ? C4 A DU 8 ? ? 116.82 127.00 -10.18 0.60 N 64 1 N3 A DU 8 ? ? C4 A DU 8 ? ? C5 A DU 8 ? ? 121.44 114.60 6.84 0.60 N 65 1 N3 A DU 8 ? ? C2 A DU 8 ? ? O2 A DU 8 ? ? 117.86 122.20 -4.34 0.70 N 66 1 N3 A DU 8 ? ? C4 A DU 8 ? ? O4 A DU 8 ? ? 112.35 119.40 -7.05 0.70 N 67 1 OP1 A DC 9 ? ? P A DC 9 ? ? OP2 A DC 9 ? ? 105.89 119.60 -13.71 1.50 N 68 1 "O5'" A DC 9 ? ? P A DC 9 ? ? OP1 A DC 9 ? ? 130.04 110.70 19.34 1.20 N 69 1 "O5'" A DC 9 ? ? P A DC 9 ? ? OP2 A DC 9 ? ? 99.77 105.70 -5.93 0.90 N 70 1 "O5'" A DC 9 ? ? "C5'" A DC 9 ? ? "C4'" A DC 9 ? ? 102.43 109.40 -6.97 0.80 N 71 1 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 102.56 108.00 -5.44 0.70 N 72 1 C5 A DC 9 ? ? C6 A DC 9 ? ? N1 A DC 9 ? ? 117.87 121.00 -3.13 0.50 N 73 1 "C3'" A DC 9 ? ? "O3'" A DC 9 ? ? P A DG 10 ? ? 139.02 119.70 19.32 1.20 Y 74 1 "O5'" A DG 10 ? ? P A DG 10 ? ? OP2 A DG 10 ? ? 123.05 110.70 12.35 1.20 N 75 1 "O5'" A DG 10 ? ? "C5'" A DG 10 ? ? "C4'" A DG 10 ? ? 101.73 109.40 -7.67 0.80 N 76 1 "C3'" A DG 10 ? ? "C2'" A DG 10 ? ? "C1'" A DG 10 ? ? 92.03 102.40 -10.37 0.80 N 77 1 C5 A DG 10 ? ? C6 A DG 10 ? ? O6 A DG 10 ? ? 123.02 128.60 -5.58 0.60 N 78 1 C5 A DC 11 ? ? C6 A DC 11 ? ? N1 A DC 11 ? ? 117.56 121.00 -3.44 0.50 N 79 1 "C3'" A DC 11 ? ? "O3'" A DC 11 ? ? P A DG 12 ? ? 131.28 119.70 11.58 1.20 Y 80 1 "O5'" A DG 12 ? ? "C5'" A DG 12 ? ? "C4'" A DG 12 ? ? 97.71 109.40 -11.69 0.80 N 81 1 "C1'" A DG 12 ? ? "O4'" A DG 12 ? ? "C4'" A DG 12 ? ? 102.29 110.10 -7.81 1.00 N 82 1 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 101.76 108.00 -6.24 0.70 N 83 1 C6 A DG 12 ? ? N1 A DG 12 ? ? C2 A DG 12 ? ? 120.84 125.10 -4.26 0.60 N 84 1 C5 A DG 12 ? ? C6 A DG 12 ? ? N1 A DG 12 ? ? 115.34 111.50 3.84 0.50 N 85 1 C5 A DG 12 ? ? C6 A DG 12 ? ? O6 A DG 12 ? ? 124.05 128.60 -4.55 0.60 N 86 1 "O5'" B DC 13 ? ? "C5'" B DC 13 ? ? "C4'" B DC 13 ? ? 104.13 109.40 -5.27 0.80 N 87 1 "C3'" B DC 13 ? ? "C2'" B DC 13 ? ? "C1'" B DC 13 ? ? 95.33 102.40 -7.07 0.80 N 88 1 "O4'" B DC 13 ? ? "C1'" B DC 13 ? ? N1 B DC 13 ? ? 113.97 108.30 5.67 0.30 N 89 1 N1 B DC 13 ? ? C2 B DC 13 ? ? O2 B DC 13 ? ? 122.96 118.90 4.06 0.60 N 90 1 "O5'" B DG 14 ? ? "C5'" B DG 14 ? ? "C4'" B DG 14 ? ? 98.96 109.40 -10.44 0.80 N 91 1 N3 B DG 14 ? ? C2 B DG 14 ? ? N2 B DG 14 ? ? 113.29 119.90 -6.61 0.70 N 92 1 N1 B DG 14 ? ? C6 B DG 14 ? ? O6 B DG 14 ? ? 124.94 119.90 5.04 0.60 N 93 1 C5 B DG 14 ? ? C6 B DG 14 ? ? O6 B DG 14 ? ? 120.82 128.60 -7.78 0.60 N 94 1 "O5'" B DC 15 ? ? "C5'" B DC 15 ? ? "C4'" B DC 15 ? ? 100.49 109.40 -8.91 0.80 N 95 1 "C1'" B DC 15 ? ? "O4'" B DC 15 ? ? "C4'" B DC 15 ? ? 102.09 110.10 -8.01 1.00 N 96 1 "O4'" B DC 15 ? ? "C1'" B DC 15 ? ? "C2'" B DC 15 ? ? 110.96 106.80 4.16 0.50 N 97 1 "O4'" B DC 15 ? ? "C1'" B DC 15 ? ? N1 B DC 15 ? ? 102.28 108.00 -5.72 0.70 N 98 1 N1 B DC 15 ? ? C2 B DC 15 ? ? O2 B DC 15 ? ? 110.89 118.90 -8.01 0.60 N 99 1 N3 B DC 15 ? ? C2 B DC 15 ? ? O2 B DC 15 ? ? 130.24 121.90 8.34 0.70 N 100 1 N3 B DC 15 ? ? C4 B DC 15 ? ? N4 B DC 15 ? ? 125.41 118.00 7.41 0.70 N 101 1 C5 B DC 15 ? ? C4 B DC 15 ? ? N4 B DC 15 ? ? 113.56 120.20 -6.64 0.70 N 102 1 "O3'" B DC 15 ? ? P B DG 16 ? ? OP1 B DG 16 ? ? 117.67 110.50 7.17 1.10 Y 103 1 OP1 B DG 16 ? ? P B DG 16 ? ? OP2 B DG 16 ? ? 110.40 119.60 -9.20 1.50 N 104 1 "O5'" B DG 16 ? ? "C5'" B DG 16 ? ? "C4'" B DG 16 ? ? 101.00 109.40 -8.40 0.80 N 105 1 P B DG 16 ? ? "O5'" B DG 16 ? ? "C5'" B DG 16 ? ? 107.06 120.90 -13.84 1.60 N 106 1 "C3'" B DG 16 ? ? "C2'" B DG 16 ? ? "C1'" B DG 16 ? ? 95.13 102.40 -7.27 0.80 N 107 1 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 116.09 108.30 7.79 0.30 N 108 1 C6 B DG 16 ? ? N1 B DG 16 ? ? C2 B DG 16 ? ? 120.58 125.10 -4.52 0.60 N 109 1 N1 B DG 16 ? ? C2 B DG 16 ? ? N3 B DG 16 ? ? 128.04 123.90 4.14 0.60 N 110 1 N1 B DG 16 ? ? C2 B DG 16 ? ? N2 B DG 16 ? ? 110.49 116.20 -5.71 0.90 N 111 1 N1 B DG 16 ? ? C6 B DG 16 ? ? O6 B DG 16 ? ? 114.94 119.90 -4.96 0.60 N 112 1 "C3'" B DG 16 ? ? "O3'" B DG 16 ? ? P B DA 17 ? ? 136.96 119.70 17.26 1.20 Y 113 1 "O5'" B DA 17 ? ? P B DA 17 ? ? OP1 B DA 17 ? ? 124.92 110.70 14.22 1.20 N 114 1 "O4'" B DA 17 ? ? "C1'" B DA 17 ? ? N9 B DA 17 ? ? 98.02 108.00 -9.98 0.70 N 115 1 C2 B DA 17 ? ? N3 B DA 17 ? ? C4 B DA 17 ? ? 105.76 110.60 -4.84 0.50 N 116 1 N3 B DA 17 ? ? C4 B DA 17 ? ? C5 B DA 17 ? ? 131.41 126.80 4.61 0.70 N 117 1 C5 B DA 17 ? ? N7 B DA 17 ? ? C8 B DA 17 ? ? 100.15 103.90 -3.75 0.50 N 118 1 N3 B DA 17 ? ? C4 B DA 17 ? ? N9 B DA 17 ? ? 122.05 127.40 -5.35 0.80 N 119 1 N1 B DA 17 ? ? C6 B DA 17 ? ? N6 B DA 17 ? ? 123.27 118.60 4.67 0.60 N 120 1 "O5'" B DA 18 ? ? P B DA 18 ? ? OP1 B DA 18 ? ? 120.71 110.70 10.01 1.20 N 121 1 "O4'" B DA 18 ? ? "C1'" B DA 18 ? ? N9 B DA 18 ? ? 110.57 108.30 2.27 0.30 N 122 1 C6 B DA 18 ? ? N1 B DA 18 ? ? C2 B DA 18 ? ? 122.69 118.60 4.09 0.60 N 123 1 N1 B DA 18 ? ? C6 B DA 18 ? ? N6 B DA 18 ? ? 122.37 118.60 3.77 0.60 N 124 1 "O5'" B DU 19 ? ? P B DU 19 ? ? OP2 B DU 19 ? ? 121.57 110.70 10.87 1.20 N 125 1 "C1'" B DU 19 ? ? "O4'" B DU 19 ? ? "C4'" B DU 19 ? ? 100.81 110.10 -9.29 1.00 N 126 1 "O4'" B DU 19 ? ? "C1'" B DU 19 ? ? "C2'" B DU 19 ? ? 110.98 106.80 4.18 0.50 N 127 1 "O4'" B DU 19 ? ? "C1'" B DU 19 ? ? N1 B DU 19 ? ? 102.42 108.00 -5.58 0.70 N 128 1 C2 B DU 19 ? ? N3 B DU 19 ? ? C4 B DU 19 ? ? 120.79 127.00 -6.21 0.60 N 129 1 N3 B DU 19 ? ? C4 B DU 19 ? ? C5 B DU 19 ? ? 121.35 114.60 6.75 0.60 N 130 1 N1 B DU 19 ? ? C2 B DU 19 ? ? O2 B DU 19 ? ? 115.74 122.80 -7.06 0.70 N 131 1 C5 B DU 19 ? ? C4 B DU 19 ? ? O4 B DU 19 ? ? 116.12 125.90 -9.78 0.60 N 132 1 OP1 B DU 20 ? ? P B DU 20 ? ? OP2 B DU 20 ? ? 133.50 119.60 13.90 1.50 N 133 1 "O5'" B DU 20 ? ? "C5'" B DU 20 ? ? "C4'" B DU 20 ? ? 101.65 109.40 -7.75 0.80 N 134 1 "C5'" B DU 20 ? ? "C4'" B DU 20 ? ? "O4'" B DU 20 ? ? 117.66 109.80 7.86 1.10 N 135 1 "O4'" B DU 20 ? ? "C1'" B DU 20 ? ? "C2'" B DU 20 ? ? 99.20 105.90 -6.70 0.80 N 136 1 C2 B DU 20 ? ? N3 B DU 20 ? ? C4 B DU 20 ? ? 121.28 127.00 -5.72 0.60 N 137 1 N3 B DU 20 ? ? C4 B DU 20 ? ? C5 B DU 20 ? ? 119.77 114.60 5.17 0.60 N 138 1 C4 B DU 20 ? ? C5 B DU 20 ? ? C6 B DU 20 ? ? 115.33 119.70 -4.37 0.60 N 139 1 C5 B DU 20 ? ? C4 B DU 20 ? ? O4 B DU 20 ? ? 121.86 125.90 -4.04 0.60 N 140 1 "C3'" B DU 20 ? ? "O3'" B DU 20 ? ? P B DC 21 ? ? 131.96 119.70 12.26 1.20 Y 141 1 P B DC 21 ? ? "O5'" B DC 21 ? ? "C5'" B DC 21 ? ? 104.94 120.90 -15.96 1.60 N 142 1 "O4'" B DC 21 ? ? "C4'" B DC 21 ? ? "C3'" B DC 21 ? ? 100.65 104.50 -3.85 0.40 N 143 1 "C5'" B DC 21 ? ? "C4'" B DC 21 ? ? "O4'" B DC 21 ? ? 117.77 109.80 7.97 1.10 N 144 1 "C4'" B DC 21 ? ? "C3'" B DC 21 ? ? "C2'" B DC 21 ? ? 109.92 103.10 6.82 0.90 N 145 1 "O4'" B DC 21 ? ? "C1'" B DC 21 ? ? "C2'" B DC 21 ? ? 99.91 105.90 -5.99 0.80 N 146 1 "O5'" B DG 22 ? ? P B DG 22 ? ? OP1 B DG 22 ? ? 119.56 110.70 8.86 1.20 N 147 1 "O5'" B DG 22 ? ? P B DG 22 ? ? OP2 B DG 22 ? ? 100.21 105.70 -5.49 0.90 N 148 1 "C3'" B DG 22 ? ? "C2'" B DG 22 ? ? "C1'" B DG 22 ? ? 92.22 102.40 -10.18 0.80 N 149 1 "O4'" B DG 22 ? ? "C1'" B DG 22 ? ? N9 B DG 22 ? ? 114.03 108.30 5.73 0.30 N 150 1 C6 B DG 22 ? ? N1 B DG 22 ? ? C2 B DG 22 ? ? 120.62 125.10 -4.48 0.60 N 151 1 C5 B DG 22 ? ? C6 B DG 22 ? ? N1 B DG 22 ? ? 116.69 111.50 5.19 0.50 N 152 1 C8 B DG 22 ? ? N9 B DG 22 ? ? C4 B DG 22 ? ? 109.53 106.40 3.13 0.40 N 153 1 N3 B DG 22 ? ? C4 B DG 22 ? ? N9 B DG 22 ? ? 129.60 126.00 3.60 0.60 N 154 1 N1 B DG 22 ? ? C2 B DG 22 ? ? N2 B DG 22 ? ? 109.17 116.20 -7.03 0.90 N 155 1 N3 B DG 22 ? ? C2 B DG 22 ? ? N2 B DG 22 ? ? 124.44 119.90 4.54 0.70 N 156 1 C5 B DG 22 ? ? C6 B DG 22 ? ? O6 B DG 22 ? ? 123.78 128.60 -4.82 0.60 N 157 1 "O4'" B DC 23 ? ? "C1'" B DC 23 ? ? N1 B DC 23 ? ? 102.43 108.00 -5.57 0.70 N 158 1 N3 B DC 23 ? ? C4 B DC 23 ? ? C5 B DC 23 ? ? 119.31 121.90 -2.59 0.40 N 159 1 C5 B DC 23 ? ? C4 B DC 23 ? ? N4 B DC 23 ? ? 124.74 120.20 4.54 0.70 N 160 1 C6 B DC 23 ? ? N1 B DC 23 ? ? "C1'" B DC 23 ? ? 128.66 120.80 7.86 1.20 N 161 1 C2 B DC 23 ? ? N1 B DC 23 ? ? "C1'" B DC 23 ? ? 110.63 118.80 -8.17 1.10 N 162 1 "O5'" B DG 24 ? ? "C5'" B DG 24 ? ? "C4'" B DG 24 ? ? 100.75 109.40 -8.65 0.80 N 163 1 C6 B DG 24 ? ? N1 B DG 24 ? ? C2 B DG 24 ? ? 120.02 125.10 -5.08 0.60 N 164 1 N1 B DG 24 ? ? C2 B DG 24 ? ? N3 B DG 24 ? ? 129.53 123.90 5.63 0.60 N 165 1 C2 B DG 24 ? ? N3 B DG 24 ? ? C4 B DG 24 ? ? 108.11 111.90 -3.79 0.50 N 166 1 C5 B DG 24 ? ? N7 B DG 24 ? ? C8 B DG 24 ? ? 100.06 104.30 -4.24 0.50 N 167 1 N3 B DG 24 ? ? C2 B DG 24 ? ? N2 B DG 24 ? ? 111.57 119.90 -8.33 0.70 N 168 1 C5 B DG 24 ? ? C6 B DG 24 ? ? O6 B DG 24 ? ? 122.57 128.60 -6.03 0.60 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DU OP3 O N N 108 DU P P N N 109 DU OP1 O N N 110 DU OP2 O N N 111 DU "O5'" O N N 112 DU "C5'" C N N 113 DU "C4'" C N R 114 DU "O4'" O N N 115 DU "C3'" C N S 116 DU "O3'" O N N 117 DU "C2'" C N N 118 DU "C1'" C N R 119 DU N1 N N N 120 DU C2 C N N 121 DU O2 O N N 122 DU N3 N N N 123 DU C4 C N N 124 DU O4 O N N 125 DU C5 C N N 126 DU C6 C N N 127 DU HOP3 H N N 128 DU HOP2 H N N 129 DU "H5'" H N N 130 DU "H5''" H N N 131 DU "H4'" H N N 132 DU "H3'" H N N 133 DU "HO3'" H N N 134 DU "H2'" H N N 135 DU "H2''" H N N 136 DU "H1'" H N N 137 DU H3 H N N 138 DU H5 H N N 139 DU H6 H N N 140 HOH O O N N 141 HOH H1 H N N 142 HOH H2 H N N 143 MG MG MG N N 144 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DU OP3 P sing N N 113 DU OP3 HOP3 sing N N 114 DU P OP1 doub N N 115 DU P OP2 sing N N 116 DU P "O5'" sing N N 117 DU OP2 HOP2 sing N N 118 DU "O5'" "C5'" sing N N 119 DU "C5'" "C4'" sing N N 120 DU "C5'" "H5'" sing N N 121 DU "C5'" "H5''" sing N N 122 DU "C4'" "O4'" sing N N 123 DU "C4'" "C3'" sing N N 124 DU "C4'" "H4'" sing N N 125 DU "O4'" "C1'" sing N N 126 DU "C3'" "O3'" sing N N 127 DU "C3'" "C2'" sing N N 128 DU "C3'" "H3'" sing N N 129 DU "O3'" "HO3'" sing N N 130 DU "C2'" "C1'" sing N N 131 DU "C2'" "H2'" sing N N 132 DU "C2'" "H2''" sing N N 133 DU "C1'" N1 sing N N 134 DU "C1'" "H1'" sing N N 135 DU N1 C2 sing N N 136 DU N1 C6 sing N N 137 DU C2 O2 doub N N 138 DU C2 N3 sing N N 139 DU N3 C4 sing N N 140 DU N3 H3 sing N N 141 DU C4 O4 doub N N 142 DU C4 C5 sing N N 143 DU C5 C6 doub N N 144 DU C5 H5 sing N N 145 DU C6 H6 sing N N 146 HOH O H1 sing N N 147 HOH O H2 sing N N 148 # _ndb_struct_conf_na.entry_id 271D _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 12 1_555 0.367 -0.198 0.021 7.525 -23.019 -1.391 1 A_DC1:DG24_B A 1 ? B 24 ? 19 1 1 A DG 2 1_555 B DC 11 1_555 -0.312 -0.185 0.748 8.866 -14.957 -4.397 2 A_DG2:DC23_B A 2 ? B 23 ? 19 1 1 A DC 3 1_555 B DG 10 1_555 0.073 -0.307 0.200 -3.080 -8.218 0.023 3 A_DC3:DG22_B A 3 ? B 22 ? 19 1 1 A DG 4 1_555 B DC 9 1_555 -0.169 -0.314 -0.425 10.310 -10.541 3.359 4 A_DG4:DC21_B A 4 ? B 21 ? 19 1 1 A DA 5 1_555 B DU 8 1_555 0.290 -0.127 0.015 7.293 -11.673 3.501 5 A_DA5:DU20_B A 5 ? B 20 ? 20 1 1 A DA 6 1_555 B DU 7 1_555 0.103 -0.284 0.066 3.224 -15.244 1.719 6 A_DA6:DU19_B A 6 ? B 19 ? 20 1 1 A DU 7 1_555 B DA 6 1_555 0.036 -0.260 0.049 -10.450 -23.343 -0.619 7 A_DU7:DA18_B A 7 ? B 18 ? 20 1 1 A DU 8 1_555 B DA 5 1_555 -0.101 -0.192 -0.106 -8.449 -9.951 -0.833 8 A_DU8:DA17_B A 8 ? B 17 ? 20 1 1 A DC 9 1_555 B DG 4 1_555 0.302 -0.104 0.012 -10.286 -3.030 -0.054 9 A_DC9:DG16_B A 9 ? B 16 ? 19 1 1 A DG 10 1_555 B DC 3 1_555 0.191 -0.247 0.330 6.213 -5.885 0.470 10 A_DG10:DC15_B A 10 ? B 15 ? 19 1 1 A DC 11 1_555 B DG 2 1_555 -0.012 -0.361 0.205 4.365 -15.631 -5.768 11 A_DC11:DG14_B A 11 ? B 14 ? 19 1 1 A DG 12 1_555 B DC 1 1_555 -0.023 -0.269 0.638 14.047 -3.032 -5.322 12 A_DG12:DC13_B A 12 ? B 13 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 12 1_555 A DG 2 1_555 B DC 11 1_555 -0.258 0.106 3.244 -7.619 7.854 34.139 -0.965 -0.683 3.174 12.972 12.584 35.800 1 AA_DC1DG2:DC23DG24_BB A 1 ? B 24 ? A 2 ? B 23 ? 1 A DG 2 1_555 B DC 11 1_555 A DC 3 1_555 B DG 10 1_555 0.406 0.340 3.682 3.790 -8.133 41.716 1.388 -0.130 3.579 -11.264 -5.250 42.628 2 AA_DG2DC3:DG22DC23_BB A 2 ? B 23 ? A 3 ? B 22 ? 1 A DC 3 1_555 B DG 10 1_555 A DG 4 1_555 B DC 9 1_555 -0.140 0.845 3.080 6.839 8.928 27.632 -0.181 1.670 3.078 17.788 -13.625 29.792 3 AA_DC3DG4:DC21DG22_BB A 3 ? B 22 ? A 4 ? B 21 ? 1 A DG 4 1_555 B DC 9 1_555 A DA 5 1_555 B DU 8 1_555 0.168 -0.250 3.282 -4.275 3.803 36.828 -0.894 -0.828 3.203 5.975 6.717 37.254 4 AA_DG4DA5:DU20DC21_BB A 4 ? B 21 ? A 5 ? B 20 ? 1 A DA 5 1_555 B DU 8 1_555 A DA 6 1_555 B DU 7 1_555 0.078 -0.339 3.274 1.268 1.940 37.044 -0.791 0.047 3.254 3.050 -1.993 37.114 5 AA_DA5DA6:DU19DU20_BB A 5 ? B 20 ? A 6 ? B 19 ? 1 A DA 6 1_555 B DU 7 1_555 A DU 7 1_555 B DA 6 1_555 -0.121 -0.577 3.437 1.467 -0.300 32.016 -0.988 0.496 3.433 -0.543 -2.657 32.050 6 AA_DA6DU7:DA18DU19_BB A 6 ? B 19 ? A 7 ? B 18 ? 1 A DU 7 1_555 B DA 6 1_555 A DU 8 1_555 B DA 5 1_555 -0.051 -0.509 3.103 0.785 -1.081 33.084 -0.721 0.216 3.116 -1.898 -1.378 33.110 7 AA_DU7DU8:DA17DA18_BB A 7 ? B 18 ? A 8 ? B 17 ? 1 A DU 8 1_555 B DA 5 1_555 A DC 9 1_555 B DG 4 1_555 -0.101 -0.323 3.259 -0.610 -0.607 42.961 -0.381 0.077 3.264 -0.828 0.833 42.969 8 AA_DU8DC9:DG16DA17_BB A 8 ? B 17 ? A 9 ? B 16 ? 1 A DC 9 1_555 B DG 4 1_555 A DG 10 1_555 B DC 3 1_555 0.369 0.684 3.039 -3.629 3.208 28.301 0.706 -1.507 3.026 6.501 7.354 28.704 9 AA_DC9DG10:DC15DG16_BB A 9 ? B 16 ? A 10 ? B 15 ? 1 A DG 10 1_555 B DC 3 1_555 A DC 11 1_555 B DG 2 1_555 -1.291 0.426 3.421 -1.885 -11.252 38.533 1.954 1.659 3.234 -16.611 2.783 40.124 10 AA_DG10DC11:DG14DC15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A DC 11 1_555 B DG 2 1_555 A DG 12 1_555 B DC 1 1_555 0.572 0.444 3.028 -2.565 0.297 38.002 0.646 -1.175 2.988 0.456 3.933 38.087 11 AA_DC11DG12:DC13DG14_BB A 11 ? B 14 ? A 12 ? B 13 ? # _atom_sites.entry_id 271D _atom_sites.fract_transf_matrix[1][1] 0.039328 _atom_sites.fract_transf_matrix[1][2] -0.000001 _atom_sites.fract_transf_matrix[1][3] -0.000001 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.025161 _atom_sites.fract_transf_matrix[2][3] -0.000001 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015324 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P # loop_