data_27WR # _entry.id 27WR # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.415 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 27WR pdb_000027wr 10.2210/pdb27wr/pdb WWPDB D_1300075647 ? ? EMDB EMD-81518 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2026-07-22 ? 2 'EM metadata' 1 0 2026-07-22 ? 3 FSC 1 0 2026-07-22 ? 4 'Half map' 1 0 2026-07-22 1 5 'Half map' 1 0 2026-07-22 2 6 Image 1 0 2026-07-22 ? 7 'Primary map' 1 0 2026-07-22 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? 3 3 FSC repository 'Initial release' ? ? 4 4 'Half map' repository 'Initial release' ? ? 5 5 'Half map' repository 'Initial release' ? ? 6 6 Image repository 'Initial release' ? ? 7 7 'Primary map' repository 'Initial release' ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 27WR _pdbx_database_status.recvd_initial_deposition_date 2026-06-15 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBC _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'horse myoglobin amyloid fibril - PM1' _pdbx_database_related.db_id EMD-81518 _pdbx_database_related.content_type 'associated EM volume' # loop_ _pdbx_contact_author.id _pdbx_contact_author.email _pdbx_contact_author.name_first _pdbx_contact_author.name_last _pdbx_contact_author.name_mi _pdbx_contact_author.role _pdbx_contact_author.identifier_ORCID 4 caoqin@sjtu.edu.cn Qin Cao ? 'principal investigator/group leader' 0000-0003-4207-2697 5 caoyiping@sjtu.edu.cn Yiping Cao ? 'principal investigator/group leader' 0000-0002-7039-5445 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Li, S.' 1 ? 'Cao, Q.' 2 ? 'Cao, Y.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nano Lett.' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1530-6992 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Myoglobin Amyloid Fibrils Reveal a Hierarchical Principle of Polymorphism and Electrostatic Self-Assembly.' _citation.year 2026 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/acs.nanolett.6c02104 _citation.pdbx_database_id_PubMed 42378159 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Li, S.' 1 ? primary 'Li, S.' 2 ? primary 'Zhao, Y.' 3 ? primary 'Fang, Y.' 4 0000-0003-3411-7648 primary 'Cao, Q.' 5 ? primary 'Cao, Y.' 6 0000-0002-7039-5445 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description Myoglobin _entity.formula_weight 3148.549 _entity.pdbx_number_of_molecules 10 _entity.pdbx_ec 1.7.-.-,1.11.1.- _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Nitrite reductase MB,Pseudoperoxidase MB' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GEWQQVLNVWGKVEADIAGHGQEVLIRL _entity_poly.pdbx_seq_one_letter_code_can GEWQQVLNVWGKVEADIAGHGQEVLIRL _entity_poly.pdbx_strand_id A,B,C,D,E,F,G,H,I,J _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLU n 1 3 TRP n 1 4 GLN n 1 5 GLN n 1 6 VAL n 1 7 LEU n 1 8 ASN n 1 9 VAL n 1 10 TRP n 1 11 GLY n 1 12 LYS n 1 13 VAL n 1 14 GLU n 1 15 ALA n 1 16 ASP n 1 17 ILE n 1 18 ALA n 1 19 GLY n 1 20 HIS n 1 21 GLY n 1 22 GLN n 1 23 GLU n 1 24 VAL n 1 25 LEU n 1 26 ILE n 1 27 ARG n 1 28 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 28 _entity_src_gen.gene_src_common_name horse _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene MB _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Equus caballus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9796 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Equus caballus' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 9796 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 5 5 GLY GLY A . n A 1 2 GLU 2 6 6 GLU GLU A . n A 1 3 TRP 3 7 7 TRP TRP A . n A 1 4 GLN 4 8 8 GLN GLN A . n A 1 5 GLN 5 9 9 GLN GLN A . n A 1 6 VAL 6 10 10 VAL VAL A . n A 1 7 LEU 7 11 11 LEU LEU A . n A 1 8 ASN 8 12 12 ASN ASN A . n A 1 9 VAL 9 13 13 VAL VAL A . n A 1 10 TRP 10 14 14 TRP TRP A . n A 1 11 GLY 11 15 15 GLY GLY A . n A 1 12 LYS 12 16 16 LYS LYS A . n A 1 13 VAL 13 17 17 VAL VAL A . n A 1 14 GLU 14 18 18 GLU GLU A . n A 1 15 ALA 15 19 19 ALA ALA A . n A 1 16 ASP 16 20 20 ASP ASP A . n A 1 17 ILE 17 21 21 ILE ILE A . n A 1 18 ALA 18 22 22 ALA ALA A . n A 1 19 GLY 19 23 23 GLY GLY A . n A 1 20 HIS 20 24 24 HIS HIS A . n A 1 21 GLY 21 25 25 GLY GLY A . n A 1 22 GLN 22 26 26 GLN GLN A . n A 1 23 GLU 23 27 27 GLU GLU A . n A 1 24 VAL 24 28 28 VAL VAL A . n A 1 25 LEU 25 29 29 LEU LEU A . n A 1 26 ILE 26 30 30 ILE ILE A . n A 1 27 ARG 27 31 31 ARG ARG A . n A 1 28 LEU 28 32 32 LEU LEU A . n B 1 1 GLY 1 5 5 GLY GLY B . n B 1 2 GLU 2 6 6 GLU GLU B . n B 1 3 TRP 3 7 7 TRP TRP B . n B 1 4 GLN 4 8 8 GLN GLN B . n B 1 5 GLN 5 9 9 GLN GLN B . n B 1 6 VAL 6 10 10 VAL VAL B . n B 1 7 LEU 7 11 11 LEU LEU B . n B 1 8 ASN 8 12 12 ASN ASN B . n B 1 9 VAL 9 13 13 VAL VAL B . n B 1 10 TRP 10 14 14 TRP TRP B . n B 1 11 GLY 11 15 15 GLY GLY B . n B 1 12 LYS 12 16 16 LYS LYS B . n B 1 13 VAL 13 17 17 VAL VAL B . n B 1 14 GLU 14 18 18 GLU GLU B . n B 1 15 ALA 15 19 19 ALA ALA B . n B 1 16 ASP 16 20 20 ASP ASP B . n B 1 17 ILE 17 21 21 ILE ILE B . n B 1 18 ALA 18 22 22 ALA ALA B . n B 1 19 GLY 19 23 23 GLY GLY B . n B 1 20 HIS 20 24 24 HIS HIS B . n B 1 21 GLY 21 25 25 GLY GLY B . n B 1 22 GLN 22 26 26 GLN GLN B . n B 1 23 GLU 23 27 27 GLU GLU B . n B 1 24 VAL 24 28 28 VAL VAL B . n B 1 25 LEU 25 29 29 LEU LEU B . n B 1 26 ILE 26 30 30 ILE ILE B . n B 1 27 ARG 27 31 31 ARG ARG B . n B 1 28 LEU 28 32 32 LEU LEU B . n C 1 1 GLY 1 5 5 GLY GLY C . n C 1 2 GLU 2 6 6 GLU GLU C . n C 1 3 TRP 3 7 7 TRP TRP C . n C 1 4 GLN 4 8 8 GLN GLN C . n C 1 5 GLN 5 9 9 GLN GLN C . n C 1 6 VAL 6 10 10 VAL VAL C . n C 1 7 LEU 7 11 11 LEU LEU C . n C 1 8 ASN 8 12 12 ASN ASN C . n C 1 9 VAL 9 13 13 VAL VAL C . n C 1 10 TRP 10 14 14 TRP TRP C . n C 1 11 GLY 11 15 15 GLY GLY C . n C 1 12 LYS 12 16 16 LYS LYS C . n C 1 13 VAL 13 17 17 VAL VAL C . n C 1 14 GLU 14 18 18 GLU GLU C . n C 1 15 ALA 15 19 19 ALA ALA C . n C 1 16 ASP 16 20 20 ASP ASP C . n C 1 17 ILE 17 21 21 ILE ILE C . n C 1 18 ALA 18 22 22 ALA ALA C . n C 1 19 GLY 19 23 23 GLY GLY C . n C 1 20 HIS 20 24 24 HIS HIS C . n C 1 21 GLY 21 25 25 GLY GLY C . n C 1 22 GLN 22 26 26 GLN GLN C . n C 1 23 GLU 23 27 27 GLU GLU C . n C 1 24 VAL 24 28 28 VAL VAL C . n C 1 25 LEU 25 29 29 LEU LEU C . n C 1 26 ILE 26 30 30 ILE ILE C . n C 1 27 ARG 27 31 31 ARG ARG C . n C 1 28 LEU 28 32 32 LEU LEU C . n D 1 1 GLY 1 5 5 GLY GLY D . n D 1 2 GLU 2 6 6 GLU GLU D . n D 1 3 TRP 3 7 7 TRP TRP D . n D 1 4 GLN 4 8 8 GLN GLN D . n D 1 5 GLN 5 9 9 GLN GLN D . n D 1 6 VAL 6 10 10 VAL VAL D . n D 1 7 LEU 7 11 11 LEU LEU D . n D 1 8 ASN 8 12 12 ASN ASN D . n D 1 9 VAL 9 13 13 VAL VAL D . n D 1 10 TRP 10 14 14 TRP TRP D . n D 1 11 GLY 11 15 15 GLY GLY D . n D 1 12 LYS 12 16 16 LYS LYS D . n D 1 13 VAL 13 17 17 VAL VAL D . n D 1 14 GLU 14 18 18 GLU GLU D . n D 1 15 ALA 15 19 19 ALA ALA D . n D 1 16 ASP 16 20 20 ASP ASP D . n D 1 17 ILE 17 21 21 ILE ILE D . n D 1 18 ALA 18 22 22 ALA ALA D . n D 1 19 GLY 19 23 23 GLY GLY D . n D 1 20 HIS 20 24 24 HIS HIS D . n D 1 21 GLY 21 25 25 GLY GLY D . n D 1 22 GLN 22 26 26 GLN GLN D . n D 1 23 GLU 23 27 27 GLU GLU D . n D 1 24 VAL 24 28 28 VAL VAL D . n D 1 25 LEU 25 29 29 LEU LEU D . n D 1 26 ILE 26 30 30 ILE ILE D . n D 1 27 ARG 27 31 31 ARG ARG D . n D 1 28 LEU 28 32 32 LEU LEU D . n E 1 1 GLY 1 5 5 GLY GLY E . n E 1 2 GLU 2 6 6 GLU GLU E . n E 1 3 TRP 3 7 7 TRP TRP E . n E 1 4 GLN 4 8 8 GLN GLN E . n E 1 5 GLN 5 9 9 GLN GLN E . n E 1 6 VAL 6 10 10 VAL VAL E . n E 1 7 LEU 7 11 11 LEU LEU E . n E 1 8 ASN 8 12 12 ASN ASN E . n E 1 9 VAL 9 13 13 VAL VAL E . n E 1 10 TRP 10 14 14 TRP TRP E . n E 1 11 GLY 11 15 15 GLY GLY E . n E 1 12 LYS 12 16 16 LYS LYS E . n E 1 13 VAL 13 17 17 VAL VAL E . n E 1 14 GLU 14 18 18 GLU GLU E . n E 1 15 ALA 15 19 19 ALA ALA E . n E 1 16 ASP 16 20 20 ASP ASP E . n E 1 17 ILE 17 21 21 ILE ILE E . n E 1 18 ALA 18 22 22 ALA ALA E . n E 1 19 GLY 19 23 23 GLY GLY E . n E 1 20 HIS 20 24 24 HIS HIS E . n E 1 21 GLY 21 25 25 GLY GLY E . n E 1 22 GLN 22 26 26 GLN GLN E . n E 1 23 GLU 23 27 27 GLU GLU E . n E 1 24 VAL 24 28 28 VAL VAL E . n E 1 25 LEU 25 29 29 LEU LEU E . n E 1 26 ILE 26 30 30 ILE ILE E . n E 1 27 ARG 27 31 31 ARG ARG E . n E 1 28 LEU 28 32 32 LEU LEU E . n F 1 1 GLY 1 5 5 GLY GLY F . n F 1 2 GLU 2 6 6 GLU GLU F . n F 1 3 TRP 3 7 7 TRP TRP F . n F 1 4 GLN 4 8 8 GLN GLN F . n F 1 5 GLN 5 9 9 GLN GLN F . n F 1 6 VAL 6 10 10 VAL VAL F . n F 1 7 LEU 7 11 11 LEU LEU F . n F 1 8 ASN 8 12 12 ASN ASN F . n F 1 9 VAL 9 13 13 VAL VAL F . n F 1 10 TRP 10 14 14 TRP TRP F . n F 1 11 GLY 11 15 15 GLY GLY F . n F 1 12 LYS 12 16 16 LYS LYS F . n F 1 13 VAL 13 17 17 VAL VAL F . n F 1 14 GLU 14 18 18 GLU GLU F . n F 1 15 ALA 15 19 19 ALA ALA F . n F 1 16 ASP 16 20 20 ASP ASP F . n F 1 17 ILE 17 21 21 ILE ILE F . n F 1 18 ALA 18 22 22 ALA ALA F . n F 1 19 GLY 19 23 23 GLY GLY F . n F 1 20 HIS 20 24 24 HIS HIS F . n F 1 21 GLY 21 25 25 GLY GLY F . n F 1 22 GLN 22 26 26 GLN GLN F . n F 1 23 GLU 23 27 27 GLU GLU F . n F 1 24 VAL 24 28 28 VAL VAL F . n F 1 25 LEU 25 29 29 LEU LEU F . n F 1 26 ILE 26 30 30 ILE ILE F . n F 1 27 ARG 27 31 31 ARG ARG F . n F 1 28 LEU 28 32 32 LEU LEU F . n G 1 1 GLY 1 5 5 GLY GLY G . n G 1 2 GLU 2 6 6 GLU GLU G . n G 1 3 TRP 3 7 7 TRP TRP G . n G 1 4 GLN 4 8 8 GLN GLN G . n G 1 5 GLN 5 9 9 GLN GLN G . n G 1 6 VAL 6 10 10 VAL VAL G . n G 1 7 LEU 7 11 11 LEU LEU G . n G 1 8 ASN 8 12 12 ASN ASN G . n G 1 9 VAL 9 13 13 VAL VAL G . n G 1 10 TRP 10 14 14 TRP TRP G . n G 1 11 GLY 11 15 15 GLY GLY G . n G 1 12 LYS 12 16 16 LYS LYS G . n G 1 13 VAL 13 17 17 VAL VAL G . n G 1 14 GLU 14 18 18 GLU GLU G . n G 1 15 ALA 15 19 19 ALA ALA G . n G 1 16 ASP 16 20 20 ASP ASP G . n G 1 17 ILE 17 21 21 ILE ILE G . n G 1 18 ALA 18 22 22 ALA ALA G . n G 1 19 GLY 19 23 23 GLY GLY G . n G 1 20 HIS 20 24 24 HIS HIS G . n G 1 21 GLY 21 25 25 GLY GLY G . n G 1 22 GLN 22 26 26 GLN GLN G . n G 1 23 GLU 23 27 27 GLU GLU G . n G 1 24 VAL 24 28 28 VAL VAL G . n G 1 25 LEU 25 29 29 LEU LEU G . n G 1 26 ILE 26 30 30 ILE ILE G . n G 1 27 ARG 27 31 31 ARG ARG G . n G 1 28 LEU 28 32 32 LEU LEU G . n H 1 1 GLY 1 5 5 GLY GLY H . n H 1 2 GLU 2 6 6 GLU GLU H . n H 1 3 TRP 3 7 7 TRP TRP H . n H 1 4 GLN 4 8 8 GLN GLN H . n H 1 5 GLN 5 9 9 GLN GLN H . n H 1 6 VAL 6 10 10 VAL VAL H . n H 1 7 LEU 7 11 11 LEU LEU H . n H 1 8 ASN 8 12 12 ASN ASN H . n H 1 9 VAL 9 13 13 VAL VAL H . n H 1 10 TRP 10 14 14 TRP TRP H . n H 1 11 GLY 11 15 15 GLY GLY H . n H 1 12 LYS 12 16 16 LYS LYS H . n H 1 13 VAL 13 17 17 VAL VAL H . n H 1 14 GLU 14 18 18 GLU GLU H . n H 1 15 ALA 15 19 19 ALA ALA H . n H 1 16 ASP 16 20 20 ASP ASP H . n H 1 17 ILE 17 21 21 ILE ILE H . n H 1 18 ALA 18 22 22 ALA ALA H . n H 1 19 GLY 19 23 23 GLY GLY H . n H 1 20 HIS 20 24 24 HIS HIS H . n H 1 21 GLY 21 25 25 GLY GLY H . n H 1 22 GLN 22 26 26 GLN GLN H . n H 1 23 GLU 23 27 27 GLU GLU H . n H 1 24 VAL 24 28 28 VAL VAL H . n H 1 25 LEU 25 29 29 LEU LEU H . n H 1 26 ILE 26 30 30 ILE ILE H . n H 1 27 ARG 27 31 31 ARG ARG H . n H 1 28 LEU 28 32 32 LEU LEU H . n I 1 1 GLY 1 5 5 GLY GLY I . n I 1 2 GLU 2 6 6 GLU GLU I . n I 1 3 TRP 3 7 7 TRP TRP I . n I 1 4 GLN 4 8 8 GLN GLN I . n I 1 5 GLN 5 9 9 GLN GLN I . n I 1 6 VAL 6 10 10 VAL VAL I . n I 1 7 LEU 7 11 11 LEU LEU I . n I 1 8 ASN 8 12 12 ASN ASN I . n I 1 9 VAL 9 13 13 VAL VAL I . n I 1 10 TRP 10 14 14 TRP TRP I . n I 1 11 GLY 11 15 15 GLY GLY I . n I 1 12 LYS 12 16 16 LYS LYS I . n I 1 13 VAL 13 17 17 VAL VAL I . n I 1 14 GLU 14 18 18 GLU GLU I . n I 1 15 ALA 15 19 19 ALA ALA I . n I 1 16 ASP 16 20 20 ASP ASP I . n I 1 17 ILE 17 21 21 ILE ILE I . n I 1 18 ALA 18 22 22 ALA ALA I . n I 1 19 GLY 19 23 23 GLY GLY I . n I 1 20 HIS 20 24 24 HIS HIS I . n I 1 21 GLY 21 25 25 GLY GLY I . n I 1 22 GLN 22 26 26 GLN GLN I . n I 1 23 GLU 23 27 27 GLU GLU I . n I 1 24 VAL 24 28 28 VAL VAL I . n I 1 25 LEU 25 29 29 LEU LEU I . n I 1 26 ILE 26 30 30 ILE ILE I . n I 1 27 ARG 27 31 31 ARG ARG I . n I 1 28 LEU 28 32 32 LEU LEU I . n J 1 1 GLY 1 5 5 GLY GLY J . n J 1 2 GLU 2 6 6 GLU GLU J . n J 1 3 TRP 3 7 7 TRP TRP J . n J 1 4 GLN 4 8 8 GLN GLN J . n J 1 5 GLN 5 9 9 GLN GLN J . n J 1 6 VAL 6 10 10 VAL VAL J . n J 1 7 LEU 7 11 11 LEU LEU J . n J 1 8 ASN 8 12 12 ASN ASN J . n J 1 9 VAL 9 13 13 VAL VAL J . n J 1 10 TRP 10 14 14 TRP TRP J . n J 1 11 GLY 11 15 15 GLY GLY J . n J 1 12 LYS 12 16 16 LYS LYS J . n J 1 13 VAL 13 17 17 VAL VAL J . n J 1 14 GLU 14 18 18 GLU GLU J . n J 1 15 ALA 15 19 19 ALA ALA J . n J 1 16 ASP 16 20 20 ASP ASP J . n J 1 17 ILE 17 21 21 ILE ILE J . n J 1 18 ALA 18 22 22 ALA ALA J . n J 1 19 GLY 19 23 23 GLY GLY J . n J 1 20 HIS 20 24 24 HIS HIS J . n J 1 21 GLY 21 25 25 GLY GLY J . n J 1 22 GLN 22 26 26 GLN GLN J . n J 1 23 GLU 23 27 27 GLU GLU J . n J 1 24 VAL 24 28 28 VAL VAL J . n J 1 25 LEU 25 29 29 LEU LEU J . n J 1 26 ILE 26 30 30 ILE ILE J . n J 1 27 ARG 27 31 31 ARG ARG J . n J 1 28 LEU 28 32 32 LEU LEU J . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 27WR _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 27WR _struct.title 'horse myoglobin amyloid fibril - PM1' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 27WR _struct_keywords.text 'protein fibril' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 1 ? H N N 1 ? I N N 1 ? J N N 1 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code MYG_HORSE _struct_ref.pdbx_db_accession P68082 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code GEWQQVLNVWGKVEADIAGHGQEVLIRL _struct_ref.pdbx_align_begin 6 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 27WR A 1 ? 28 ? P68082 6 ? 33 ? 5 32 2 1 27WR B 1 ? 28 ? P68082 6 ? 33 ? 5 32 3 1 27WR C 1 ? 28 ? P68082 6 ? 33 ? 5 32 4 1 27WR D 1 ? 28 ? P68082 6 ? 33 ? 5 32 5 1 27WR E 1 ? 28 ? P68082 6 ? 33 ? 5 32 6 1 27WR F 1 ? 28 ? P68082 6 ? 33 ? 5 32 7 1 27WR G 1 ? 28 ? P68082 6 ? 33 ? 5 32 8 1 27WR H 1 ? 28 ? P68082 6 ? 33 ? 5 32 9 1 27WR I 1 ? 28 ? P68082 6 ? 33 ? 5 32 10 1 27WR J 1 ? 28 ? P68082 6 ? 33 ? 5 32 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details decameric _pdbx_struct_assembly.oligomeric_count 10 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0 _pdbx_struct_oper_list.matrix[1][2] 0.0 _pdbx_struct_oper_list.matrix[1][3] 0.0 _pdbx_struct_oper_list.vector[1] 0.0 _pdbx_struct_oper_list.matrix[2][1] 0.0 _pdbx_struct_oper_list.matrix[2][2] 1.0 _pdbx_struct_oper_list.matrix[2][3] 0.0 _pdbx_struct_oper_list.vector[2] 0.0 _pdbx_struct_oper_list.matrix[3][1] 0.0 _pdbx_struct_oper_list.matrix[3][2] 0.0 _pdbx_struct_oper_list.matrix[3][3] 1.0 _pdbx_struct_oper_list.vector[3] 0.0 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 5 ? AA2 ? 5 ? AA3 ? 5 ? AA4 ? 5 ? AA5 ? 5 ? AA6 ? 5 ? AA7 ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA1 3 4 ? parallel AA1 4 5 ? parallel AA2 1 2 ? parallel AA2 2 3 ? parallel AA2 3 4 ? parallel AA2 4 5 ? parallel AA3 1 2 ? parallel AA3 2 3 ? parallel AA3 3 4 ? parallel AA3 4 5 ? parallel AA4 1 2 ? parallel AA4 2 3 ? parallel AA4 3 4 ? parallel AA4 4 5 ? parallel AA5 1 2 ? parallel AA5 2 3 ? parallel AA5 3 4 ? parallel AA5 4 5 ? parallel AA6 1 2 ? parallel AA6 2 3 ? parallel AA6 3 4 ? parallel AA6 4 5 ? parallel AA7 1 2 ? parallel AA7 2 3 ? parallel AA7 3 4 ? parallel AA7 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 TRP A 3 ? VAL A 9 ? TRP A 7 VAL A 13 AA1 2 TRP C 3 ? VAL C 9 ? TRP C 7 VAL C 13 AA1 3 TRP E 3 ? VAL E 9 ? TRP E 7 VAL E 13 AA1 4 TRP G 3 ? VAL G 9 ? TRP G 7 VAL G 13 AA1 5 TRP I 3 ? VAL I 9 ? TRP I 7 VAL I 13 AA2 1 LYS A 12 ? VAL A 13 ? LYS A 16 VAL A 17 AA2 2 LYS C 12 ? VAL C 13 ? LYS C 16 VAL C 17 AA2 3 LYS E 12 ? VAL E 13 ? LYS E 16 VAL E 17 AA2 4 LYS G 12 ? VAL G 13 ? LYS G 16 VAL G 17 AA2 5 LYS I 12 ? VAL I 13 ? LYS I 16 VAL I 17 AA3 1 ASP A 16 ? HIS A 20 ? ASP A 20 HIS A 24 AA3 2 ASP C 16 ? HIS C 20 ? ASP C 20 HIS C 24 AA3 3 ASP E 16 ? HIS E 20 ? ASP E 20 HIS E 24 AA3 4 ASP G 16 ? HIS G 20 ? ASP G 20 HIS G 24 AA3 5 ASP I 16 ? HIS I 20 ? ASP I 20 HIS I 24 AA4 1 GLU A 23 ? LEU A 25 ? GLU A 27 LEU A 29 AA4 2 GLU C 23 ? LEU C 25 ? GLU C 27 LEU C 29 AA4 3 GLU E 23 ? LEU E 25 ? GLU E 27 LEU E 29 AA4 4 GLU G 23 ? LEU G 25 ? GLU G 27 LEU G 29 AA4 5 GLU I 23 ? LEU I 25 ? GLU I 27 LEU I 29 AA5 1 GLU B 2 ? TRP B 3 ? GLU B 6 TRP B 7 AA5 2 GLU D 2 ? TRP D 3 ? GLU D 6 TRP D 7 AA5 3 GLU F 2 ? TRP F 3 ? GLU F 6 TRP F 7 AA5 4 GLU H 2 ? TRP H 3 ? GLU H 6 TRP H 7 AA5 5 GLU J 2 ? TRP J 3 ? GLU J 6 TRP J 7 AA6 1 LYS B 12 ? GLY B 19 ? LYS B 16 GLY B 23 AA6 2 LYS D 12 ? GLY D 19 ? LYS D 16 GLY D 23 AA6 3 LYS F 12 ? GLY F 19 ? LYS F 16 GLY F 23 AA6 4 LYS H 12 ? GLY H 19 ? LYS H 16 GLY H 23 AA6 5 LYS J 12 ? GLY J 19 ? LYS J 16 GLY J 23 AA7 1 GLU B 23 ? ILE B 26 ? GLU B 27 ILE B 30 AA7 2 GLU D 23 ? ILE D 26 ? GLU D 27 ILE D 30 AA7 3 GLU F 23 ? ILE F 26 ? GLU F 27 ILE F 30 AA7 4 GLU H 23 ? ILE H 26 ? GLU H 27 ILE H 30 AA7 5 GLU J 23 ? ILE J 26 ? GLU J 27 ILE J 30 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N TRP A 3 ? N TRP A 7 O GLN C 4 ? O GLN C 8 AA1 2 3 N TRP C 3 ? N TRP C 7 O GLN E 4 ? O GLN E 8 AA1 3 4 N TRP E 3 ? N TRP E 7 O GLN G 4 ? O GLN G 8 AA1 4 5 N TRP G 3 ? N TRP G 7 O GLN I 4 ? O GLN I 8 AA2 1 2 N VAL A 13 ? N VAL A 17 O LYS C 12 ? O LYS C 16 AA2 2 3 N VAL C 13 ? N VAL C 17 O LYS E 12 ? O LYS E 16 AA2 3 4 N VAL E 13 ? N VAL E 17 O LYS G 12 ? O LYS G 16 AA2 4 5 N VAL G 13 ? N VAL G 17 O LYS I 12 ? O LYS I 16 AA3 1 2 N ILE A 17 ? N ILE A 21 O ALA C 18 ? O ALA C 22 AA3 2 3 N ILE C 17 ? N ILE C 21 O ALA E 18 ? O ALA E 22 AA3 3 4 N ILE E 17 ? N ILE E 21 O ALA G 18 ? O ALA G 22 AA3 4 5 N ILE G 17 ? N ILE G 21 O ALA I 18 ? O ALA I 22 AA4 1 2 N VAL A 24 ? N VAL A 28 O LEU C 25 ? O LEU C 29 AA4 2 3 N VAL C 24 ? N VAL C 28 O LEU E 25 ? O LEU E 29 AA4 3 4 N VAL E 24 ? N VAL E 28 O LEU G 25 ? O LEU G 29 AA4 4 5 N VAL G 24 ? N VAL G 28 O LEU I 25 ? O LEU I 29 AA5 1 2 N TRP B 3 ? N TRP B 7 O GLU D 2 ? O GLU D 6 AA5 2 3 N TRP D 3 ? N TRP D 7 O GLU F 2 ? O GLU F 6 AA5 3 4 N TRP F 3 ? N TRP F 7 O GLU H 2 ? O GLU H 6 AA5 4 5 N TRP H 3 ? N TRP H 7 O GLU J 2 ? O GLU J 6 AA6 1 2 N LYS B 12 ? N LYS B 16 O VAL D 13 ? O VAL D 17 AA6 2 3 N LYS D 12 ? N LYS D 16 O VAL F 13 ? O VAL F 17 AA6 3 4 N LYS F 12 ? N LYS F 16 O VAL H 13 ? O VAL H 17 AA6 4 5 N LYS H 12 ? N LYS H 16 O VAL J 13 ? O VAL J 17 AA7 1 2 N LEU B 25 ? N LEU B 29 O VAL D 24 ? O VAL D 28 AA7 2 3 N LEU D 25 ? N LEU D 29 O VAL F 24 ? O VAL F 28 AA7 3 4 N LEU F 25 ? N LEU F 29 O VAL H 24 ? O VAL H 28 AA7 4 5 N LEU H 25 ? N LEU H 29 O VAL J 24 ? O VAL J 28 # _pdbx_entry_details.entry_id 27WR _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification N # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 27WR _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 27WR _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 2.7 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 97055 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type HELICAL # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 2 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source NATURAL _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'horse myoglobin amyloid fibril - PM1' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 27WR _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 1500 _em_imaging.nominal_defocus_max 2500 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? _em_imaging.objective_aperture ? _em_imaging.microscope_serial_number ? _em_imaging.microscope_version ? # _em_vitrification.entry_id 27WR _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 27WR _em_experiment.id 1 _em_experiment.reconstruction_method HELICAL _em_experiment.aggregation_state FILAMENT _em_experiment.entity_assembly_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 HIS N N N N 123 HIS CA C N S 124 HIS C C N N 125 HIS O O N N 126 HIS CB C N N 127 HIS CG C Y N 128 HIS ND1 N Y N 129 HIS CD2 C Y N 130 HIS CE1 C Y N 131 HIS NE2 N Y N 132 HIS OXT O N N 133 HIS H H N N 134 HIS H2 H N N 135 HIS HA H N N 136 HIS HB2 H N N 137 HIS HB3 H N N 138 HIS HD1 H N N 139 HIS HD2 H N N 140 HIS HE1 H N N 141 HIS HE2 H N N 142 HIS HXT H N N 143 ILE N N N N 144 ILE CA C N S 145 ILE C C N N 146 ILE O O N N 147 ILE CB C N S 148 ILE CG1 C N N 149 ILE CG2 C N N 150 ILE CD1 C N N 151 ILE OXT O N N 152 ILE H H N N 153 ILE H2 H N N 154 ILE HA H N N 155 ILE HB H N N 156 ILE HG12 H N N 157 ILE HG13 H N N 158 ILE HG21 H N N 159 ILE HG22 H N N 160 ILE HG23 H N N 161 ILE HD11 H N N 162 ILE HD12 H N N 163 ILE HD13 H N N 164 ILE HXT H N N 165 LEU N N N N 166 LEU CA C N S 167 LEU C C N N 168 LEU O O N N 169 LEU CB C N N 170 LEU CG C N N 171 LEU CD1 C N N 172 LEU CD2 C N N 173 LEU OXT O N N 174 LEU H H N N 175 LEU H2 H N N 176 LEU HA H N N 177 LEU HB2 H N N 178 LEU HB3 H N N 179 LEU HG H N N 180 LEU HD11 H N N 181 LEU HD12 H N N 182 LEU HD13 H N N 183 LEU HD21 H N N 184 LEU HD22 H N N 185 LEU HD23 H N N 186 LEU HXT H N N 187 LYS N N N N 188 LYS CA C N S 189 LYS C C N N 190 LYS O O N N 191 LYS CB C N N 192 LYS CG C N N 193 LYS CD C N N 194 LYS CE C N N 195 LYS NZ N N N 196 LYS OXT O N N 197 LYS H H N N 198 LYS H2 H N N 199 LYS HA H N N 200 LYS HB2 H N N 201 LYS HB3 H N N 202 LYS HG2 H N N 203 LYS HG3 H N N 204 LYS HD2 H N N 205 LYS HD3 H N N 206 LYS HE2 H N N 207 LYS HE3 H N N 208 LYS HZ1 H N N 209 LYS HZ2 H N N 210 LYS HZ3 H N N 211 LYS HXT H N N 212 TRP N N N N 213 TRP CA C N S 214 TRP C C N N 215 TRP O O N N 216 TRP CB C N N 217 TRP CG C Y N 218 TRP CD1 C Y N 219 TRP CD2 C Y N 220 TRP NE1 N Y N 221 TRP CE2 C Y N 222 TRP CE3 C Y N 223 TRP CZ2 C Y N 224 TRP CZ3 C Y N 225 TRP CH2 C Y N 226 TRP OXT O N N 227 TRP H H N N 228 TRP H2 H N N 229 TRP HA H N N 230 TRP HB2 H N N 231 TRP HB3 H N N 232 TRP HD1 H N N 233 TRP HE1 H N N 234 TRP HE3 H N N 235 TRP HZ2 H N N 236 TRP HZ3 H N N 237 TRP HH2 H N N 238 TRP HXT H N N 239 VAL N N N N 240 VAL CA C N S 241 VAL C C N N 242 VAL O O N N 243 VAL CB C N N 244 VAL CG1 C N N 245 VAL CG2 C N N 246 VAL OXT O N N 247 VAL H H N N 248 VAL H2 H N N 249 VAL HA H N N 250 VAL HB H N N 251 VAL HG11 H N N 252 VAL HG12 H N N 253 VAL HG13 H N N 254 VAL HG21 H N N 255 VAL HG22 H N N 256 VAL HG23 H N N 257 VAL HXT H N N 258 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 HIS N CA sing N N 116 HIS N H sing N N 117 HIS N H2 sing N N 118 HIS CA C sing N N 119 HIS CA CB sing N N 120 HIS CA HA sing N N 121 HIS C O doub N N 122 HIS C OXT sing N N 123 HIS CB CG sing N N 124 HIS CB HB2 sing N N 125 HIS CB HB3 sing N N 126 HIS CG ND1 sing Y N 127 HIS CG CD2 doub Y N 128 HIS ND1 CE1 doub Y N 129 HIS ND1 HD1 sing N N 130 HIS CD2 NE2 sing Y N 131 HIS CD2 HD2 sing N N 132 HIS CE1 NE2 sing Y N 133 HIS CE1 HE1 sing N N 134 HIS NE2 HE2 sing N N 135 HIS OXT HXT sing N N 136 ILE N CA sing N N 137 ILE N H sing N N 138 ILE N H2 sing N N 139 ILE CA C sing N N 140 ILE CA CB sing N N 141 ILE CA HA sing N N 142 ILE C O doub N N 143 ILE C OXT sing N N 144 ILE CB CG1 sing N N 145 ILE CB CG2 sing N N 146 ILE CB HB sing N N 147 ILE CG1 CD1 sing N N 148 ILE CG1 HG12 sing N N 149 ILE CG1 HG13 sing N N 150 ILE CG2 HG21 sing N N 151 ILE CG2 HG22 sing N N 152 ILE CG2 HG23 sing N N 153 ILE CD1 HD11 sing N N 154 ILE CD1 HD12 sing N N 155 ILE CD1 HD13 sing N N 156 ILE OXT HXT sing N N 157 LEU N CA sing N N 158 LEU N H sing N N 159 LEU N H2 sing N N 160 LEU CA C sing N N 161 LEU CA CB sing N N 162 LEU CA HA sing N N 163 LEU C O doub N N 164 LEU C OXT sing N N 165 LEU CB CG sing N N 166 LEU CB HB2 sing N N 167 LEU CB HB3 sing N N 168 LEU CG CD1 sing N N 169 LEU CG CD2 sing N N 170 LEU CG HG sing N N 171 LEU CD1 HD11 sing N N 172 LEU CD1 HD12 sing N N 173 LEU CD1 HD13 sing N N 174 LEU CD2 HD21 sing N N 175 LEU CD2 HD22 sing N N 176 LEU CD2 HD23 sing N N 177 LEU OXT HXT sing N N 178 LYS N CA sing N N 179 LYS N H sing N N 180 LYS N H2 sing N N 181 LYS CA C sing N N 182 LYS CA CB sing N N 183 LYS CA HA sing N N 184 LYS C O doub N N 185 LYS C OXT sing N N 186 LYS CB CG sing N N 187 LYS CB HB2 sing N N 188 LYS CB HB3 sing N N 189 LYS CG CD sing N N 190 LYS CG HG2 sing N N 191 LYS CG HG3 sing N N 192 LYS CD CE sing N N 193 LYS CD HD2 sing N N 194 LYS CD HD3 sing N N 195 LYS CE NZ sing N N 196 LYS CE HE2 sing N N 197 LYS CE HE3 sing N N 198 LYS NZ HZ1 sing N N 199 LYS NZ HZ2 sing N N 200 LYS NZ HZ3 sing N N 201 LYS OXT HXT sing N N 202 TRP N CA sing N N 203 TRP N H sing N N 204 TRP N H2 sing N N 205 TRP CA C sing N N 206 TRP CA CB sing N N 207 TRP CA HA sing N N 208 TRP C O doub N N 209 TRP C OXT sing N N 210 TRP CB CG sing N N 211 TRP CB HB2 sing N N 212 TRP CB HB3 sing N N 213 TRP CG CD1 doub Y N 214 TRP CG CD2 sing Y N 215 TRP CD1 NE1 sing Y N 216 TRP CD1 HD1 sing N N 217 TRP CD2 CE2 doub Y N 218 TRP CD2 CE3 sing Y N 219 TRP NE1 CE2 sing Y N 220 TRP NE1 HE1 sing N N 221 TRP CE2 CZ2 sing Y N 222 TRP CE3 CZ3 doub Y N 223 TRP CE3 HE3 sing N N 224 TRP CZ2 CH2 doub Y N 225 TRP CZ2 HZ2 sing N N 226 TRP CZ3 CH2 sing Y N 227 TRP CZ3 HZ3 sing N N 228 TRP CH2 HH2 sing N N 229 TRP OXT HXT sing N N 230 VAL N CA sing N N 231 VAL N H sing N N 232 VAL N H2 sing N N 233 VAL CA C sing N N 234 VAL CA CB sing N N 235 VAL CA HA sing N N 236 VAL C O doub N N 237 VAL C OXT sing N N 238 VAL CB CG1 sing N N 239 VAL CB CG2 sing N N 240 VAL CB HB sing N N 241 VAL CG1 HG11 sing N N 242 VAL CG1 HG12 sing N N 243 VAL CG1 HG13 sing N N 244 VAL CG2 HG21 sing N N 245 VAL CG2 HG22 sing N N 246 VAL CG2 HG23 sing N N 247 VAL OXT HXT sing N N 248 # _em_admin.current_status REL _em_admin.deposition_date 2026-06-15 _em_admin.deposition_site PDBJ _em_admin.entry_id 27WR _em_admin.last_update 2026-07-22 _em_admin.map_release_date 2026-07-22 _em_admin.title 'horse myoglobin amyloid fibril - PM1' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 9796 _em_entity_assembly_naturalsource.organism 'Equus caballus' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.details ? _em_helical_entity.axial_symmetry C1 _em_helical_entity.angular_rotation_per_subunit -0.8046 _em_helical_entity.axial_rise_per_subunit 4.779 # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 40 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'FEI FALCON IV (4k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version _em_software.reference_DOI 'PARTICLE SELECTION' ? 1 1 ? ? RELION 4.0 ? 'IMAGE ACQUISITION' ? 2 ? ? 1 ? ? ? MASKING ? 3 ? ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? ? ? ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? ? 'MODEL FITTING' ? 7 ? ? ? ? ? ? 'MODEL REFINEMENT' ? 8 ? ? ? ? ? ? OTHER ? 9 ? ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? ? RECONSTRUCTION ? 13 1 ? ? RELION 4.0 ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'National Natural Science Foundation of China (NSFC)' _pdbx_audit_support.country China _pdbx_audit_support.grant_number 32572505 _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 27WR _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O # loop_ #