data_280D # _entry.id 280D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 280D pdb_0000280d 10.2210/pdb280d/pdb RCSB URL050 ? ? WWPDB D_1000177692 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1996-09-30 2 'Structure model' 1 1 2008-05-23 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2018-04-04 5 'Structure model' 1 4 2024-02-14 6 'Structure model' 1 5 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 6 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' diffrn_source 2 5 'Structure model' chem_comp_atom 3 5 'Structure model' chem_comp_bond 4 5 'Structure model' database_2 5 6 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_diffrn_source.type' 2 5 'Structure model' '_database_2.pdbx_DOI' 3 5 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 280D _pdbx_database_status.recvd_initial_deposition_date 1996-08-22 _pdbx_database_status.deposit_site NDB _pdbx_database_status.process_site NDB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Lietzke, S.E.' 1 'Barnes, C.L.' 2 'Kundrot, C.E.' 3 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;The structure of an RNA dodecamer shows how tandem U-U base pairs increase the range of stable RNA structures and the diversity of recognition sites. ; Structure 4 917 930 1996 STRUE6 UK 0969-2126 2005 ? 8805576 '10.1016/S0969-2126(96)00099-8' 1 'Data reduction from twinned RNA crystals' 'Acta Crystallogr.,Sect.D' 52 687 ? 1996 ABCRE6 DK 0907-4449 0766 ? ? ? 2 'Crystallization of Ribozymes and Small RNA Motifs by a Sparse Matrix Approach' Proc.Natl.Acad.Sci.USA 90 7829 7833 1993 PNASA6 US 0027-8424 0040 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Lietzke, S.E.' 1 ? primary 'Barnes, C.L.' 2 ? primary 'Berglund, J.A.' 3 ? primary 'Kundrot, C.E.' 4 ? 1 'Lietzke, S.E.' 5 ? 1 'Carperos, V.E.' 6 ? 1 'Kundrot, C.E.' 7 ? 2 'Doudna, J.A.' 8 ? 2 'Grosshans, C.' 9 ? 2 'Gooding, A.' 10 ? 2 'Kundrot, C.E.' 11 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man ;RNA (5'-R(*GP*GP*CP*GP*CP*UP*UP*GP*CP*GP*UP*C)-3') ; 3820.296 4 ? ? ? ? 2 water nat water 18.015 158 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGCGCUUGCGUC _entity_poly.pdbx_seq_one_letter_code_can GGCGCUUGCGUC _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 C n 1 4 G n 1 5 C n 1 6 U n 1 7 U n 1 8 G n 1 9 C n 1 10 G n 1 11 U n 1 12 C n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name ? _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id ? _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PAR1219 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'THE DODECAMER WAS PREPARED BY TRANSCRIPTION WITH T7 RNA POLYMERASE FROM A SINGLE STRANDED DNA TEMPLATE.' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 C 3 3 3 C C A . n A 1 4 G 4 4 4 G G A . n A 1 5 C 5 5 5 C C A . n A 1 6 U 6 6 6 U U A . n A 1 7 U 7 7 7 U U A . n A 1 8 G 8 8 8 G G A . n A 1 9 C 9 9 9 C C A . n A 1 10 G 10 10 10 G G A . n A 1 11 U 11 11 11 U U A . n A 1 12 C 12 12 12 C C A . n B 1 1 G 1 13 13 G G B . n B 1 2 G 2 14 14 G G B . n B 1 3 C 3 15 15 C C B . n B 1 4 G 4 16 16 G G B . n B 1 5 C 5 17 17 C C B . n B 1 6 U 6 18 18 U U B . n B 1 7 U 7 19 19 U U B . n B 1 8 G 8 20 20 G G B . n B 1 9 C 9 21 21 C C B . n B 1 10 G 10 22 22 G G B . n B 1 11 U 11 23 23 U U B . n B 1 12 C 12 24 24 C C B . n C 1 1 G 1 25 25 G G C . n C 1 2 G 2 26 26 G G C . n C 1 3 C 3 27 27 C C C . n C 1 4 G 4 28 28 G G C . n C 1 5 C 5 29 29 C C C . n C 1 6 U 6 30 30 U U C . n C 1 7 U 7 31 31 U U C . n C 1 8 G 8 32 32 G G C . n C 1 9 C 9 33 33 C C C . n C 1 10 G 10 34 34 G G C . n C 1 11 U 11 35 35 U U C . n C 1 12 C 12 36 36 C C C . n D 1 1 G 1 37 37 G G D . n D 1 2 G 2 38 38 G G D . n D 1 3 C 3 39 39 C C D . n D 1 4 G 4 40 40 G G D . n D 1 5 C 5 41 41 C C D . n D 1 6 U 6 42 42 U U D . n D 1 7 U 7 43 43 U U D . n D 1 8 G 8 44 44 G G D . n D 1 9 C 9 45 45 C C D . n D 1 10 G 10 46 46 G G D . n D 1 11 U 11 47 47 U U D . n D 1 12 C 12 48 48 C C D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HOH 1 50 50 HOH HOH A . E 2 HOH 2 57 57 HOH HOH A . E 2 HOH 3 59 59 HOH HOH A . E 2 HOH 4 60 60 HOH HOH A . E 2 HOH 5 68 68 HOH HOH A . E 2 HOH 6 70 70 HOH HOH A . E 2 HOH 7 71 71 HOH HOH A . E 2 HOH 8 74 74 HOH HOH A . E 2 HOH 9 78 78 HOH HOH A . E 2 HOH 10 87 87 HOH HOH A . E 2 HOH 11 96 96 HOH HOH A . E 2 HOH 12 100 100 HOH HOH A . E 2 HOH 13 101 101 HOH HOH A . E 2 HOH 14 103 103 HOH HOH A . E 2 HOH 15 104 104 HOH HOH A . E 2 HOH 16 110 110 HOH HOH A . E 2 HOH 17 112 112 HOH HOH A . E 2 HOH 18 115 115 HOH HOH A . E 2 HOH 19 116 116 HOH HOH A . E 2 HOH 20 117 117 HOH HOH A . E 2 HOH 21 120 120 HOH HOH A . E 2 HOH 22 130 130 HOH HOH A . E 2 HOH 23 132 132 HOH HOH A . E 2 HOH 24 133 133 HOH HOH A . E 2 HOH 25 135 135 HOH HOH A . E 2 HOH 26 136 136 HOH HOH A . E 2 HOH 27 140 140 HOH HOH A . E 2 HOH 28 146 146 HOH HOH A . E 2 HOH 29 150 150 HOH HOH A . E 2 HOH 30 151 151 HOH HOH A . E 2 HOH 31 152 152 HOH HOH A . E 2 HOH 32 155 155 HOH HOH A . E 2 HOH 33 157 157 HOH HOH A . E 2 HOH 34 166 166 HOH HOH A . E 2 HOH 35 167 167 HOH HOH A . E 2 HOH 36 171 171 HOH HOH A . E 2 HOH 37 172 172 HOH HOH A . E 2 HOH 38 173 173 HOH HOH A . E 2 HOH 39 174 174 HOH HOH A . E 2 HOH 40 180 180 HOH HOH A . E 2 HOH 41 183 183 HOH HOH A . E 2 HOH 42 190 190 HOH HOH A . E 2 HOH 43 191 191 HOH HOH A . E 2 HOH 44 192 192 HOH HOH A . E 2 HOH 45 193 193 HOH HOH A . E 2 HOH 46 196 196 HOH HOH A . E 2 HOH 47 197 197 HOH HOH A . E 2 HOH 48 199 199 HOH HOH A . E 2 HOH 49 203 203 HOH HOH A . E 2 HOH 50 204 204 HOH HOH A . E 2 HOH 51 205 205 HOH HOH A . F 2 HOH 1 51 51 HOH HOH B . F 2 HOH 2 56 56 HOH HOH B . F 2 HOH 3 58 58 HOH HOH B . F 2 HOH 4 62 62 HOH HOH B . F 2 HOH 5 63 63 HOH HOH B . F 2 HOH 6 64 64 HOH HOH B . F 2 HOH 7 66 66 HOH HOH B . F 2 HOH 8 69 69 HOH HOH B . F 2 HOH 9 77 77 HOH HOH B . F 2 HOH 10 80 80 HOH HOH B . F 2 HOH 11 86 86 HOH HOH B . F 2 HOH 12 91 91 HOH HOH B . F 2 HOH 13 98 98 HOH HOH B . F 2 HOH 14 99 99 HOH HOH B . F 2 HOH 15 113 113 HOH HOH B . F 2 HOH 16 118 118 HOH HOH B . F 2 HOH 17 119 119 HOH HOH B . F 2 HOH 18 121 121 HOH HOH B . F 2 HOH 19 123 123 HOH HOH B . F 2 HOH 20 126 126 HOH HOH B . F 2 HOH 21 128 128 HOH HOH B . F 2 HOH 22 129 129 HOH HOH B . F 2 HOH 23 131 131 HOH HOH B . F 2 HOH 24 134 134 HOH HOH B . F 2 HOH 25 137 137 HOH HOH B . F 2 HOH 26 142 142 HOH HOH B . F 2 HOH 27 144 144 HOH HOH B . F 2 HOH 28 149 149 HOH HOH B . F 2 HOH 29 154 154 HOH HOH B . F 2 HOH 30 158 158 HOH HOH B . F 2 HOH 31 160 160 HOH HOH B . F 2 HOH 32 161 161 HOH HOH B . F 2 HOH 33 164 164 HOH HOH B . F 2 HOH 34 195 195 HOH HOH B . F 2 HOH 35 206 206 HOH HOH B . G 2 HOH 1 54 54 HOH HOH C . G 2 HOH 2 61 61 HOH HOH C . G 2 HOH 3 65 65 HOH HOH C . G 2 HOH 4 73 73 HOH HOH C . G 2 HOH 5 76 76 HOH HOH C . G 2 HOH 6 82 82 HOH HOH C . G 2 HOH 7 85 85 HOH HOH C . G 2 HOH 8 88 88 HOH HOH C . G 2 HOH 9 89 89 HOH HOH C . G 2 HOH 10 90 90 HOH HOH C . G 2 HOH 11 97 97 HOH HOH C . G 2 HOH 12 102 102 HOH HOH C . G 2 HOH 13 105 105 HOH HOH C . G 2 HOH 14 108 108 HOH HOH C . G 2 HOH 15 114 114 HOH HOH C . G 2 HOH 16 125 125 HOH HOH C . G 2 HOH 17 127 127 HOH HOH C . G 2 HOH 18 139 139 HOH HOH C . G 2 HOH 19 141 141 HOH HOH C . G 2 HOH 20 143 143 HOH HOH C . G 2 HOH 21 145 145 HOH HOH C . G 2 HOH 22 148 148 HOH HOH C . G 2 HOH 23 156 156 HOH HOH C . G 2 HOH 24 165 165 HOH HOH C . G 2 HOH 25 168 168 HOH HOH C . G 2 HOH 26 169 169 HOH HOH C . G 2 HOH 27 170 170 HOH HOH C . G 2 HOH 28 175 175 HOH HOH C . G 2 HOH 29 176 176 HOH HOH C . G 2 HOH 30 182 182 HOH HOH C . G 2 HOH 31 184 184 HOH HOH C . G 2 HOH 32 187 187 HOH HOH C . G 2 HOH 33 189 189 HOH HOH C . G 2 HOH 34 198 198 HOH HOH C . G 2 HOH 35 201 201 HOH HOH C . H 2 HOH 1 49 49 HOH HOH D . H 2 HOH 2 52 52 HOH HOH D . H 2 HOH 3 53 53 HOH HOH D . H 2 HOH 4 55 55 HOH HOH D . H 2 HOH 5 67 67 HOH HOH D . H 2 HOH 6 72 72 HOH HOH D . H 2 HOH 7 75 75 HOH HOH D . H 2 HOH 8 79 79 HOH HOH D . H 2 HOH 9 81 81 HOH HOH D . H 2 HOH 10 83 83 HOH HOH D . H 2 HOH 11 84 84 HOH HOH D . H 2 HOH 12 92 92 HOH HOH D . H 2 HOH 13 93 93 HOH HOH D . H 2 HOH 14 94 94 HOH HOH D . H 2 HOH 15 95 95 HOH HOH D . H 2 HOH 16 106 106 HOH HOH D . H 2 HOH 17 107 107 HOH HOH D . H 2 HOH 18 109 109 HOH HOH D . H 2 HOH 19 111 111 HOH HOH D . H 2 HOH 20 122 122 HOH HOH D . H 2 HOH 21 124 124 HOH HOH D . H 2 HOH 22 138 138 HOH HOH D . H 2 HOH 23 147 147 HOH HOH D . H 2 HOH 24 153 153 HOH HOH D . H 2 HOH 25 159 159 HOH HOH D . H 2 HOH 26 162 162 HOH HOH D . H 2 HOH 27 163 163 HOH HOH D . H 2 HOH 28 177 177 HOH HOH D . H 2 HOH 29 178 178 HOH HOH D . H 2 HOH 30 179 179 HOH HOH D . H 2 HOH 31 181 181 HOH HOH D . H 2 HOH 32 185 185 HOH HOH D . H 2 HOH 33 186 186 HOH HOH D . H 2 HOH 34 188 188 HOH HOH D . H 2 HOH 35 194 194 HOH HOH D . H 2 HOH 36 200 200 HOH HOH D . H 2 HOH 37 202 202 HOH HOH D . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal AMoRE phasing . ? 1 X-PLOR refinement . ? 2 XDS 'data reduction' . ? 3 XSCALE 'data scaling' . ? 4 # _cell.entry_id 280D _cell.length_a 29.440 _cell.length_b 28.910 _cell.length_c 46.460 _cell.angle_alpha 98.87 _cell.angle_beta 72.95 _cell.angle_gamma 96.16 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 280D _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.entry_id 280D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 2 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.44 _exptl_crystal.density_percent_sol 49.57 _exptl_crystal.description ;THE CRYSTALS WERE TWINNED; DATA FROM EACH LATTICE WAS INDIVIDUALLY PROCESSED WITH XDS AND A SET OF PROGRAMS DESCRIBED IN REFERENCE 1. DATA FROM THE TWO LATTICES WERE THEN MERGED WITH XSCALE. ; # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details 'ROOM TEMPERATURE' _exptl_crystal_grow.pH 7.00 _exptl_crystal_grow.pdbx_details 'pH 7.00, VAPOR DIFFUSION' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 MPD ? ? ? 1 3 1 MGCL2 ? ? ? 1 4 1 'NA CACODYLATE' ? ? ? 1 5 1 'NH4 ACETATE' ? ? ? 1 6 2 WATER ? ? ? 1 7 2 MPD ? ? ? 1 8 2 MGCL2 ? ? ? 1 9 2 'NA CACODYLATE' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'AREA DETECTOR' _diffrn_detector.type 'SIEMENS-NICOLET X100' _diffrn_detector.pdbx_collection_date 1995-03-22 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator GRAPHITE _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 280D _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 15.000 _reflns.d_resolution_high 2.400 _reflns.number_obs 5429 _reflns.number_all ? _reflns.percent_possible_obs 95.400 _reflns.pdbx_Rmerge_I_obs 0.0760000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 44.600 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.900 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.400 _reflns_shell.d_res_low 2.600 _reflns_shell.percent_possible_all 95.50 _reflns_shell.Rmerge_I_obs 0.1820000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 8.050 _reflns_shell.pdbx_redundancy 2.400 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 280D _refine.ls_number_reflns_obs 5142 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 8.000 _refine.ls_d_res_high 2.400 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.1910000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1910000 _refine.ls_R_factor_R_free 0.2400000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 0.10 _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ;HELIX 1 OF THE RNA DODECAMER CONTAINING THE E. COLI SHINE DALGARNO SEQUENCE (NDB ID ARL062) WITH THE SEQUENCE MUTATED TO R(GGCGCUUGCGUC). ; _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1008 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 158 _refine_hist.number_atoms_total 1166 _refine_hist.d_res_high 2.400 _refine_hist.d_res_low 8.000 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.010 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.26 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d 8.0 ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d 1.50 ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.d_res_high 2.40 _refine_ls_shell.d_res_low 2.51 _refine_ls_shell.number_reflns_R_work 458 _refine_ls_shell.R_factor_R_work 0.3600000 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.4100000 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 BERMAN BERMAN 'X-RAY DIFFRACTION' 2 BERMAN BERMAN 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 280D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 280D _struct.title ;THE STRUCTURE OF AN RNA DODECAMER SHOWS HOW TANDEM U-U BASE PAIRS INCREASE THE RANGE OF STABLE RNA STRUCTURES AND THE DIVERSITY OF RECOGNITION SITES ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 280D _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'UNUSUAL RNA, DOUBLE HELIX, INTERNAL LOOP, MISMATCHED, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 280D _struct_ref.pdbx_db_accession 280D _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 280D A 1 ? 12 ? 280D 1 ? 12 ? 1 12 2 1 280D B 1 ? 12 ? 280D 13 ? 24 ? 13 24 3 1 280D C 1 ? 12 ? 280D 25 ? 36 ? 25 36 4 1 280D D 1 ? 12 ? 280D 37 ? 48 ? 37 48 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 author_defined_assembly ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E,F 2 1 C,D,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_biol.id 1 2 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 B C 12 N3 ? ? A G 1 B C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 B C 12 O2 ? ? A G 1 B C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 B C 12 N4 ? ? A G 1 B C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 B U 11 O2 ? ? A G 2 B U 23 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog5 hydrog ? ? A G 2 O6 ? ? ? 1_555 B U 11 N3 ? ? A G 2 B U 23 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog6 hydrog ? ? A C 3 N3 ? ? ? 1_555 B G 10 N1 ? ? A C 3 B G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 3 N4 ? ? ? 1_555 B G 10 O6 ? ? A C 3 B G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 3 O2 ? ? ? 1_555 B G 10 N2 ? ? A C 3 B G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 4 N1 ? ? ? 1_555 B C 9 N3 ? ? A G 4 B C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 N2 ? ? ? 1_555 B C 9 O2 ? ? A G 4 B C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 4 O6 ? ? ? 1_555 B C 9 N4 ? ? A G 4 B C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 5 N3 ? ? ? 1_555 B G 8 N1 ? ? A C 5 B G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 5 N4 ? ? ? 1_555 B G 8 O6 ? ? A C 5 B G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 5 O2 ? ? ? 1_555 B G 8 N2 ? ? A C 5 B G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A U 6 N3 ? ? ? 1_555 B U 7 O4 ? ? A U 6 B U 19 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog16 hydrog ? ? A U 6 O2 ? ? ? 1_555 B U 7 N3 ? ? A U 6 B U 19 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog17 hydrog ? ? A U 7 N3 ? ? ? 1_555 B U 6 O2 ? ? A U 7 B U 18 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog18 hydrog ? ? A U 7 O4 ? ? ? 1_555 B U 6 N3 ? ? A U 7 B U 18 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog19 hydrog ? ? A G 8 N1 ? ? ? 1_555 B C 5 N3 ? ? A G 8 B C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 8 N2 ? ? ? 1_555 B C 5 O2 ? ? A G 8 B C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 8 O6 ? ? ? 1_555 B C 5 N4 ? ? A G 8 B C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 9 N3 ? ? ? 1_555 B G 4 N1 ? ? A C 9 B G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 9 N4 ? ? ? 1_555 B G 4 O6 ? ? A C 9 B G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 9 O2 ? ? ? 1_555 B G 4 N2 ? ? A C 9 B G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 10 N1 ? ? ? 1_555 B C 3 N3 ? ? A G 10 B C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 10 N2 ? ? ? 1_555 B C 3 O2 ? ? A G 10 B C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 10 O6 ? ? ? 1_555 B C 3 N4 ? ? A G 10 B C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A U 11 N3 ? ? ? 1_555 B G 2 O6 ? ? A U 11 B G 14 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog29 hydrog ? ? A U 11 O2 ? ? ? 1_555 B G 2 N1 ? ? A U 11 B G 14 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog30 hydrog ? ? A C 12 N3 ? ? ? 1_555 B G 1 N1 ? ? A C 12 B G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A C 12 N4 ? ? ? 1_555 B G 1 O6 ? ? A C 12 B G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 12 O2 ? ? ? 1_555 B G 1 N2 ? ? A C 12 B G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? C G 1 N1 ? ? ? 1_555 D C 12 N3 ? ? C G 25 D C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? C G 1 N2 ? ? ? 1_555 D C 12 O2 ? ? C G 25 D C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? C G 1 O6 ? ? ? 1_555 D C 12 N4 ? ? C G 25 D C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C G 2 N1 ? ? ? 1_555 D U 11 O2 ? ? C G 26 D U 47 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog37 hydrog ? ? C G 2 O6 ? ? ? 1_555 D U 11 N3 ? ? C G 26 D U 47 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog38 hydrog ? ? C C 3 N3 ? ? ? 1_555 D G 10 N1 ? ? C C 27 D G 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? C C 3 N4 ? ? ? 1_555 D G 10 O6 ? ? C C 27 D G 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? C C 3 O2 ? ? ? 1_555 D G 10 N2 ? ? C C 27 D G 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? C G 4 N1 ? ? ? 1_555 D C 9 N3 ? ? C G 28 D C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? C G 4 N2 ? ? ? 1_555 D C 9 O2 ? ? C G 28 D C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? C G 4 O6 ? ? ? 1_555 D C 9 N4 ? ? C G 28 D C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? C C 5 N3 ? ? ? 1_555 D G 8 N1 ? ? C C 29 D G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? C C 5 N4 ? ? ? 1_555 D G 8 O6 ? ? C C 29 D G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? C C 5 O2 ? ? ? 1_555 D G 8 N2 ? ? C C 29 D G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? C U 6 N3 ? ? ? 1_555 D U 7 O4 ? ? C U 30 D U 43 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog48 hydrog ? ? C U 6 O2 ? ? ? 1_555 D U 7 N3 ? ? C U 30 D U 43 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog49 hydrog ? ? C U 7 N3 ? ? ? 1_555 D U 6 O2 ? ? C U 31 D U 42 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog50 hydrog ? ? C U 7 O4 ? ? ? 1_555 D U 6 N3 ? ? C U 31 D U 42 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog51 hydrog ? ? C G 8 N1 ? ? ? 1_555 D C 5 N3 ? ? C G 32 D C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? C G 8 N2 ? ? ? 1_555 D C 5 O2 ? ? C G 32 D C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? C G 8 O6 ? ? ? 1_555 D C 5 N4 ? ? C G 32 D C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? C C 9 N3 ? ? ? 1_555 D G 4 N1 ? ? C C 33 D G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? C C 9 N4 ? ? ? 1_555 D G 4 O6 ? ? C C 33 D G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? C C 9 O2 ? ? ? 1_555 D G 4 N2 ? ? C C 33 D G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? C G 10 N1 ? ? ? 1_555 D C 3 N3 ? ? C G 34 D C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? C G 10 N2 ? ? ? 1_555 D C 3 O2 ? ? C G 34 D C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? C G 10 O6 ? ? ? 1_555 D C 3 N4 ? ? C G 34 D C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? C U 11 N3 ? ? ? 1_555 D G 2 O6 ? ? C U 35 D G 38 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog61 hydrog ? ? C U 11 O2 ? ? ? 1_555 D G 2 N1 ? ? C U 35 D G 38 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog62 hydrog ? ? C C 12 N3 ? ? ? 1_555 D G 1 N1 ? ? C C 36 D G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? C C 12 N4 ? ? ? 1_555 D G 1 O6 ? ? C C 36 D G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? C C 12 O2 ? ? ? 1_555 D G 1 N2 ? ? C C 36 D G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 173 ? ? O A HOH 180 ? ? 1.54 2 1 O C HOH 82 ? ? O C HOH 156 ? ? 1.96 3 1 O C HOH 89 ? ? O D HOH 53 ? ? 2.01 4 1 O A HOH 196 ? ? O B HOH 195 ? ? 2.02 5 1 O C HOH 73 ? ? O C HOH 168 ? ? 2.05 6 1 O D HOH 52 ? ? O D HOH 93 ? ? 2.12 7 1 O D HOH 84 ? ? O D HOH 188 ? ? 2.19 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id U _pdbx_validate_planes.auth_asym_id C _pdbx_validate_planes.auth_seq_id 30 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.067 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _refine_B_iso.class _refine_B_iso.details _refine_B_iso.treatment _refine_B_iso.pdbx_refine_id 'ALL ATOMS' TR isotropic 'X-RAY DIFFRACTION' 'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION' # loop_ _refine_occupancy.class _refine_occupancy.treatment _refine_occupancy.pdbx_refine_id 'ALL ATOMS' fix 'X-RAY DIFFRACTION' 'ALL WATERS' fix 'X-RAY DIFFRACTION' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal C OP3 O N N 1 C P P N N 2 C OP1 O N N 3 C OP2 O N N 4 C "O5'" O N N 5 C "C5'" C N N 6 C "C4'" C N R 7 C "O4'" O N N 8 C "C3'" C N S 9 C "O3'" O N N 10 C "C2'" C N R 11 C "O2'" O N N 12 C "C1'" C N R 13 C N1 N N N 14 C C2 C N N 15 C O2 O N N 16 C N3 N N N 17 C C4 C N N 18 C N4 N N N 19 C C5 C N N 20 C C6 C N N 21 C HOP3 H N N 22 C HOP2 H N N 23 C "H5'" H N N 24 C "H5''" H N N 25 C "H4'" H N N 26 C "H3'" H N N 27 C "HO3'" H N N 28 C "H2'" H N N 29 C "HO2'" H N N 30 C "H1'" H N N 31 C H41 H N N 32 C H42 H N N 33 C H5 H N N 34 C H6 H N N 35 G OP3 O N N 36 G P P N N 37 G OP1 O N N 38 G OP2 O N N 39 G "O5'" O N N 40 G "C5'" C N N 41 G "C4'" C N R 42 G "O4'" O N N 43 G "C3'" C N S 44 G "O3'" O N N 45 G "C2'" C N R 46 G "O2'" O N N 47 G "C1'" C N R 48 G N9 N Y N 49 G C8 C Y N 50 G N7 N Y N 51 G C5 C Y N 52 G C6 C N N 53 G O6 O N N 54 G N1 N N N 55 G C2 C N N 56 G N2 N N N 57 G N3 N N N 58 G C4 C Y N 59 G HOP3 H N N 60 G HOP2 H N N 61 G "H5'" H N N 62 G "H5''" H N N 63 G "H4'" H N N 64 G "H3'" H N N 65 G "HO3'" H N N 66 G "H2'" H N N 67 G "HO2'" H N N 68 G "H1'" H N N 69 G H8 H N N 70 G H1 H N N 71 G H21 H N N 72 G H22 H N N 73 HOH O O N N 74 HOH H1 H N N 75 HOH H2 H N N 76 U OP3 O N N 77 U P P N N 78 U OP1 O N N 79 U OP2 O N N 80 U "O5'" O N N 81 U "C5'" C N N 82 U "C4'" C N R 83 U "O4'" O N N 84 U "C3'" C N S 85 U "O3'" O N N 86 U "C2'" C N R 87 U "O2'" O N N 88 U "C1'" C N R 89 U N1 N N N 90 U C2 C N N 91 U O2 O N N 92 U N3 N N N 93 U C4 C N N 94 U O4 O N N 95 U C5 C N N 96 U C6 C N N 97 U HOP3 H N N 98 U HOP2 H N N 99 U "H5'" H N N 100 U "H5''" H N N 101 U "H4'" H N N 102 U "H3'" H N N 103 U "HO3'" H N N 104 U "H2'" H N N 105 U "HO2'" H N N 106 U "H1'" H N N 107 U H3 H N N 108 U H5 H N N 109 U H6 H N N 110 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal C OP3 P sing N N 1 C OP3 HOP3 sing N N 2 C P OP1 doub N N 3 C P OP2 sing N N 4 C P "O5'" sing N N 5 C OP2 HOP2 sing N N 6 C "O5'" "C5'" sing N N 7 C "C5'" "C4'" sing N N 8 C "C5'" "H5'" sing N N 9 C "C5'" "H5''" sing N N 10 C "C4'" "O4'" sing N N 11 C "C4'" "C3'" sing N N 12 C "C4'" "H4'" sing N N 13 C "O4'" "C1'" sing N N 14 C "C3'" "O3'" sing N N 15 C "C3'" "C2'" sing N N 16 C "C3'" "H3'" sing N N 17 C "O3'" "HO3'" sing N N 18 C "C2'" "O2'" sing N N 19 C "C2'" "C1'" sing N N 20 C "C2'" "H2'" sing N N 21 C "O2'" "HO2'" sing N N 22 C "C1'" N1 sing N N 23 C "C1'" "H1'" sing N N 24 C N1 C2 sing N N 25 C N1 C6 sing N N 26 C C2 O2 doub N N 27 C C2 N3 sing N N 28 C N3 C4 doub N N 29 C C4 N4 sing N N 30 C C4 C5 sing N N 31 C N4 H41 sing N N 32 C N4 H42 sing N N 33 C C5 C6 doub N N 34 C C5 H5 sing N N 35 C C6 H6 sing N N 36 G OP3 P sing N N 37 G OP3 HOP3 sing N N 38 G P OP1 doub N N 39 G P OP2 sing N N 40 G P "O5'" sing N N 41 G OP2 HOP2 sing N N 42 G "O5'" "C5'" sing N N 43 G "C5'" "C4'" sing N N 44 G "C5'" "H5'" sing N N 45 G "C5'" "H5''" sing N N 46 G "C4'" "O4'" sing N N 47 G "C4'" "C3'" sing N N 48 G "C4'" "H4'" sing N N 49 G "O4'" "C1'" sing N N 50 G "C3'" "O3'" sing N N 51 G "C3'" "C2'" sing N N 52 G "C3'" "H3'" sing N N 53 G "O3'" "HO3'" sing N N 54 G "C2'" "O2'" sing N N 55 G "C2'" "C1'" sing N N 56 G "C2'" "H2'" sing N N 57 G "O2'" "HO2'" sing N N 58 G "C1'" N9 sing N N 59 G "C1'" "H1'" sing N N 60 G N9 C8 sing Y N 61 G N9 C4 sing Y N 62 G C8 N7 doub Y N 63 G C8 H8 sing N N 64 G N7 C5 sing Y N 65 G C5 C6 sing N N 66 G C5 C4 doub Y N 67 G C6 O6 doub N N 68 G C6 N1 sing N N 69 G N1 C2 sing N N 70 G N1 H1 sing N N 71 G C2 N2 sing N N 72 G C2 N3 doub N N 73 G N2 H21 sing N N 74 G N2 H22 sing N N 75 G N3 C4 sing N N 76 HOH O H1 sing N N 77 HOH O H2 sing N N 78 U OP3 P sing N N 79 U OP3 HOP3 sing N N 80 U P OP1 doub N N 81 U P OP2 sing N N 82 U P "O5'" sing N N 83 U OP2 HOP2 sing N N 84 U "O5'" "C5'" sing N N 85 U "C5'" "C4'" sing N N 86 U "C5'" "H5'" sing N N 87 U "C5'" "H5''" sing N N 88 U "C4'" "O4'" sing N N 89 U "C4'" "C3'" sing N N 90 U "C4'" "H4'" sing N N 91 U "O4'" "C1'" sing N N 92 U "C3'" "O3'" sing N N 93 U "C3'" "C2'" sing N N 94 U "C3'" "H3'" sing N N 95 U "O3'" "HO3'" sing N N 96 U "C2'" "O2'" sing N N 97 U "C2'" "C1'" sing N N 98 U "C2'" "H2'" sing N N 99 U "O2'" "HO2'" sing N N 100 U "C1'" N1 sing N N 101 U "C1'" "H1'" sing N N 102 U N1 C2 sing N N 103 U N1 C6 sing N N 104 U C2 O2 doub N N 105 U C2 N3 sing N N 106 U N3 C4 sing N N 107 U N3 H3 sing N N 108 U C4 O4 doub N N 109 U C4 C5 sing N N 110 U C5 C6 doub N N 111 U C5 H5 sing N N 112 U C6 H6 sing N N 113 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 280D 'double helix' 280D 'a-form double helix' 280D 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 B C 12 1_555 -0.447 -0.017 0.215 -6.976 -7.064 3.175 1 A_G1:C24_B A 1 ? B 24 ? 19 1 1 A G 2 1_555 B U 11 1_555 -1.816 -0.547 0.554 0.929 -8.767 4.556 2 A_G2:U23_B A 2 ? B 23 ? 28 1 1 A C 3 1_555 B G 10 1_555 0.165 -0.241 0.132 8.196 -11.372 3.256 3 A_C3:G22_B A 3 ? B 22 ? 19 1 1 A G 4 1_555 B C 9 1_555 -0.464 -0.320 0.202 7.370 -15.501 4.585 4 A_G4:C21_B A 4 ? B 21 ? 19 1 1 A C 5 1_555 B G 8 1_555 0.356 -0.297 -0.590 18.238 -16.537 6.991 5 A_C5:G20_B A 5 ? B 20 ? 19 1 1 A U 6 1_555 B U 7 1_555 2.277 -1.775 0.350 5.145 -18.280 21.951 6 A_U6:U19_B A 6 ? B 19 ? 16 1 1 A U 7 1_555 B U 6 1_555 -2.392 -1.844 0.632 -3.554 -21.037 21.065 7 A_U7:U18_B A 7 ? B 18 ? 16 1 1 A G 8 1_555 B C 5 1_555 -0.567 -0.342 0.179 2.556 -12.701 -0.526 8 A_G8:C17_B A 8 ? B 17 ? 19 1 1 A C 9 1_555 B G 4 1_555 0.319 -0.468 0.328 -0.928 -17.736 -1.485 9 A_C9:G16_B A 9 ? B 16 ? 19 1 1 A G 10 1_555 B C 3 1_555 -0.495 -0.229 0.306 -2.359 -17.433 3.952 10 A_G10:C15_B A 10 ? B 15 ? 19 1 1 A U 11 1_555 B G 2 1_555 1.894 -0.151 -0.212 1.692 -11.146 7.092 11 A_U11:G14_B A 11 ? B 14 ? 28 1 1 A C 12 1_555 B G 1 1_555 0.488 -0.388 0.044 7.625 -4.600 0.201 12 A_C12:G13_B A 12 ? B 13 ? 19 1 1 C G 1 1_555 D C 12 1_555 -0.163 -0.038 -0.289 -13.719 -12.761 -0.803 13 C_G25:C48_D C 25 ? D 48 ? 19 1 1 C G 2 1_555 D U 11 1_555 -1.969 -0.481 0.174 -0.633 -12.372 -0.323 14 C_G26:U47_D C 26 ? D 47 ? 28 1 1 C C 3 1_555 D G 10 1_555 0.264 -0.206 -0.131 4.873 -4.693 1.223 15 C_C27:G46_D C 27 ? D 46 ? 19 1 1 C G 4 1_555 D C 9 1_555 -0.251 -0.175 -0.164 -2.437 -12.312 3.309 16 C_G28:C45_D C 28 ? D 45 ? 19 1 1 C C 5 1_555 D G 8 1_555 0.340 -0.372 -0.411 14.885 -11.499 4.433 17 C_C29:G44_D C 29 ? D 44 ? 19 1 1 C U 6 1_555 D U 7 1_555 2.138 -1.593 -0.057 5.207 -13.947 19.119 18 C_U30:U43_D C 30 ? D 43 ? 16 1 1 C U 7 1_555 D U 6 1_555 -2.352 -1.622 0.094 -6.504 -13.298 14.743 19 C_U31:U42_D C 31 ? D 42 ? 16 1 1 C G 8 1_555 D C 5 1_555 -0.617 -0.337 -0.276 -7.914 -13.316 3.601 20 C_G32:C41_D C 32 ? D 41 ? 19 1 1 C C 9 1_555 D G 4 1_555 -0.079 -0.126 0.048 -6.111 -7.790 -0.939 21 C_C33:G40_D C 33 ? D 40 ? 19 1 1 C G 10 1_555 D C 3 1_555 -0.219 -0.189 -0.007 -0.987 -12.423 4.551 22 C_G34:C39_D C 34 ? D 39 ? 19 1 1 C U 11 1_555 D G 2 1_555 1.665 -0.498 0.140 -1.065 -18.169 1.357 23 C_U35:G38_D C 35 ? D 38 ? 28 1 1 C C 12 1_555 D G 1 1_555 0.399 -0.122 0.399 0.406 -4.571 -1.207 24 C_C36:G37_D C 36 ? D 37 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 B C 12 1_555 A G 2 1_555 B U 11 1_555 -0.336 -1.847 2.885 -3.830 4.443 31.255 -4.064 0.017 2.625 8.157 7.031 31.787 1 AA_G1G2:U23C24_BB A 1 ? B 24 ? A 2 ? B 23 ? 1 A G 2 1_555 B U 11 1_555 A C 3 1_555 B G 10 1_555 -0.228 -0.877 3.042 1.231 7.690 37.257 -2.230 0.492 2.804 11.879 -1.902 38.034 2 AA_G2C3:G22U23_BB A 2 ? B 23 ? A 3 ? B 22 ? 1 A C 3 1_555 B G 10 1_555 A G 4 1_555 B C 9 1_555 -0.210 -1.568 2.936 -2.277 19.161 28.714 -4.920 0.085 1.617 34.193 4.063 34.481 3 AA_C3G4:C21G22_BB A 3 ? B 22 ? A 4 ? B 21 ? 1 A G 4 1_555 B C 9 1_555 A C 5 1_555 B G 8 1_555 0.241 -1.116 2.981 4.563 7.638 33.145 -2.948 0.222 2.674 13.098 -7.825 34.286 4 AA_G4C5:G20C21_BB A 4 ? B 21 ? A 5 ? B 20 ? 1 A C 5 1_555 B G 8 1_555 A U 6 1_555 B U 7 1_555 1.005 -0.779 3.607 -2.447 11.060 37.728 -2.553 -1.802 3.194 16.650 3.684 39.332 5 AA_C5U6:U19G20_BB A 5 ? B 20 ? A 6 ? B 19 ? 1 A U 6 1_555 B U 7 1_555 A U 7 1_555 B U 6 1_555 -0.092 -2.085 3.023 0.070 8.466 21.094 -7.750 0.254 2.041 22.015 -0.182 22.712 6 AA_U6U7:U18U19_BB A 6 ? B 19 ? A 7 ? B 18 ? 1 A U 7 1_555 B U 6 1_555 A G 8 1_555 B C 5 1_555 -1.266 -1.034 3.008 -0.503 7.905 40.003 -2.265 1.768 2.778 11.419 0.726 40.748 7 AA_U7G8:C17U18_BB A 7 ? B 18 ? A 8 ? B 17 ? 1 A G 8 1_555 B C 5 1_555 A C 9 1_555 B G 4 1_555 -0.350 -0.807 3.302 0.394 10.072 31.925 -3.023 0.671 2.916 17.767 -0.695 33.439 8 AA_G8C9:G16C17_BB A 8 ? B 17 ? A 9 ? B 16 ? 1 A C 9 1_555 B G 4 1_555 A G 10 1_555 B C 3 1_555 0.780 -1.953 2.937 1.093 18.378 27.944 -5.638 -1.226 1.441 33.809 -2.011 33.363 9 AA_C9G10:C15G16_BB A 9 ? B 16 ? A 10 ? B 15 ? 1 A G 10 1_555 B C 3 1_555 A U 11 1_555 B G 2 1_555 0.170 -1.083 3.155 4.538 2.314 40.102 -1.817 0.243 3.091 3.358 -6.586 40.411 10 AA_G10U11:G14C15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A U 11 1_555 B G 2 1_555 A C 12 1_555 B G 1 1_555 0.155 -1.775 2.845 3.704 8.835 31.176 -4.396 0.239 2.273 15.972 -6.696 32.580 11 AA_U11C12:G13G14_BB A 11 ? B 14 ? A 12 ? B 13 ? 1 C G 1 1_555 D C 12 1_555 C G 2 1_555 D U 11 1_555 -0.240 -1.595 2.968 -5.247 2.086 28.206 -3.631 -0.572 2.842 4.226 10.632 28.754 12 CC_G25G26:U47C48_DD C 25 ? D 48 ? C 26 ? D 47 ? 1 C G 2 1_555 D U 11 1_555 C C 3 1_555 D G 10 1_555 0.075 -1.266 2.956 -0.049 9.817 37.709 -2.921 -0.118 2.559 14.882 0.075 38.921 13 CC_G26C27:G46U47_DD C 26 ? D 47 ? C 27 ? D 46 ? 1 C C 3 1_555 D G 10 1_555 C G 4 1_555 D C 9 1_555 -0.195 -1.433 2.988 0.331 24.649 29.189 -4.607 0.331 1.401 40.927 -0.549 38.032 14 CC_C27G28:C45G46_DD C 27 ? D 46 ? C 28 ? D 45 ? 1 C G 4 1_555 D C 9 1_555 C C 5 1_555 D G 8 1_555 0.198 -1.154 2.860 0.450 8.896 29.861 -3.554 -0.297 2.427 16.799 -0.850 31.132 15 CC_G28C29:G44C45_DD C 28 ? D 45 ? C 29 ? D 44 ? 1 C C 5 1_555 D G 8 1_555 C U 6 1_555 D U 7 1_555 1.319 -0.775 3.706 1.242 6.721 39.782 -1.973 -1.755 3.571 9.788 -1.809 40.342 16 CC_C29U30:U43G44_DD C 29 ? D 44 ? C 30 ? D 43 ? 1 C U 6 1_555 D U 7 1_555 C U 7 1_555 D U 6 1_555 -0.565 -2.311 3.057 -3.599 12.955 20.973 -8.302 0.496 1.474 31.729 8.814 24.872 17 CC_U30U31:U42U43_DD C 30 ? D 43 ? C 31 ? D 42 ? 1 C U 7 1_555 D U 6 1_555 C G 8 1_555 D C 5 1_555 -0.994 -1.342 3.342 -0.310 10.348 35.907 -3.422 1.513 2.868 16.370 0.490 37.322 18 CC_U31G32:C41U42_DD C 31 ? D 42 ? C 32 ? D 41 ? 1 C G 8 1_555 D C 5 1_555 C C 9 1_555 D G 4 1_555 -0.356 -1.260 3.181 -4.328 10.933 32.330 -3.708 -0.021 2.653 18.872 7.471 34.348 19 CC_G32C33:G40C41_DD C 32 ? D 41 ? C 33 ? D 40 ? 1 C C 9 1_555 D G 4 1_555 C G 10 1_555 D C 3 1_555 0.574 -1.585 2.930 3.008 14.243 28.890 -4.867 -0.607 1.997 26.528 -5.602 32.280 20 CC_C33G34:C39G40_DD C 33 ? D 40 ? C 34 ? D 39 ? 1 C G 10 1_555 D C 3 1_555 C U 11 1_555 D G 2 1_555 0.322 -1.393 3.163 1.064 4.352 38.805 -2.580 -0.360 3.003 6.524 -1.595 39.053 21 CC_G34U35:G38C39_DD C 34 ? D 39 ? C 35 ? D 38 ? 1 C U 11 1_555 D G 2 1_555 C C 12 1_555 D G 1 1_555 0.154 -2.093 3.038 1.244 8.215 30.214 -5.192 -0.086 2.404 15.397 -2.332 31.310 22 CC_U35C36:G37G38_DD C 35 ? D 38 ? C 36 ? D 37 ? # _pdbx_initial_refinement_model.accession_code 1SDR _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.details ;HELIX 1 OF THE RNA DODECAMER CONTAINING THE E. COLI SHINE DALGARNO SEQUENCE (NDB ID ARL062) WITH THE SEQUENCE MUTATED TO R(GGCGCUUGCGUC). ; # _atom_sites.entry_id 280D _atom_sites.fract_transf_matrix[1][1] 0.033970 _atom_sites.fract_transf_matrix[1][2] 0.003670 _atom_sites.fract_transf_matrix[1][3] -0.010030 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.034790 _atom_sites.fract_transf_matrix[2][3] 0.004530 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022700 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_