data_282D # _entry.id 282D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 282D pdb_0000282d 10.2210/pdb282d/pdb RCSB DDF069 ? ? WWPDB D_1000177694 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1996-10-23 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-14 5 'Structure model' 1 4 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' struct_site 5 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 282D _pdbx_database_status.recvd_initial_deposition_date 1996-08-26 _pdbx_database_status.deposit_site NDB _pdbx_database_status.process_site NDB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Cruse, W.' 1 'Saludjian, P.' 2 'Leroux, Y.' 3 'Leger, Y.' 4 'El Manouni, D.' 5 'Prange, T.' 6 # _citation.id primary _citation.title 'A continuous transition from A-DNA to B-DNA in the 1:1 complex between nogalamycin and the hexamer dCCCGGG.' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 271 _citation.page_first 15558 _citation.page_last 15567 _citation.year 1996 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 8662899 _citation.pdbx_database_id_DOI 10.1074/jbc.271.26.15558 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Cruse, W.B.' 1 ? primary 'Saludjian, P.' 2 ? primary 'Leroux, Y.' 3 ? primary 'Leger, G.' 4 ? primary 'Manouni, D.E.' 5 ? primary 'Prange, T.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*CP*CP*GP*GP*G)-3') ; 1810.205 2 ? ? ? ? 2 non-polymer syn NOGALAMYCIN 787.803 1 ? ? ? ? 3 water nat water 18.015 47 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DC)(DC)(DG)(DG)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CCCGGG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 NOGALAMYCIN NGM 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DC n 1 3 DC n 1 4 DG n 1 5 DG n 1 6 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 HOH non-polymer . WATER ? 'H2 O' 18.015 NGM non-polymer . NOGALAMYCIN ? 'C39 H49 N O16' 787.803 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DC 2 2 2 DC C A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DG 5 5 5 DG G A . n A 1 6 DG 6 6 6 DG G A . n B 1 1 DC 1 7 7 DC C B . n B 1 2 DC 2 8 8 DC C B . n B 1 3 DC 3 9 9 DC C B . n B 1 4 DG 4 10 10 DG G B . n B 1 5 DG 5 11 11 DG G B . n B 1 6 DG 6 12 12 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NGM 1 13 13 NGM NGM A . D 3 HOH 1 14 14 HOH HOH A . D 3 HOH 2 17 17 HOH HOH A . D 3 HOH 3 20 20 HOH HOH A . D 3 HOH 4 21 21 HOH HOH A . D 3 HOH 5 22 22 HOH HOH A . D 3 HOH 6 23 23 HOH HOH A . D 3 HOH 7 24 24 HOH HOH A . D 3 HOH 8 26 26 HOH HOH A . D 3 HOH 9 30 30 HOH HOH A . D 3 HOH 10 31 31 HOH HOH A . D 3 HOH 11 33 33 HOH HOH A . D 3 HOH 12 34 34 HOH HOH A . D 3 HOH 13 38 38 HOH HOH A . D 3 HOH 14 39 39 HOH HOH A . D 3 HOH 15 40 40 HOH HOH A . D 3 HOH 16 41 41 HOH HOH A . D 3 HOH 17 44 44 HOH HOH A . D 3 HOH 18 45 45 HOH HOH A . D 3 HOH 19 48 48 HOH HOH A . D 3 HOH 20 49 49 HOH HOH A . D 3 HOH 21 50 50 HOH HOH A . D 3 HOH 22 51 51 HOH HOH A . D 3 HOH 23 52 52 HOH HOH A . D 3 HOH 24 53 53 HOH HOH A . D 3 HOH 25 54 54 HOH HOH A . D 3 HOH 26 55 55 HOH HOH A . D 3 HOH 27 56 56 HOH HOH A . D 3 HOH 28 59 59 HOH HOH A . E 3 HOH 1 15 15 HOH HOH B . E 3 HOH 2 16 16 HOH HOH B . E 3 HOH 3 18 18 HOH HOH B . E 3 HOH 4 19 19 HOH HOH B . E 3 HOH 5 25 25 HOH HOH B . E 3 HOH 6 27 27 HOH HOH B . E 3 HOH 7 28 28 HOH HOH B . E 3 HOH 8 29 29 HOH HOH B . E 3 HOH 9 32 32 HOH HOH B . E 3 HOH 10 35 35 HOH HOH B . E 3 HOH 11 36 36 HOH HOH B . E 3 HOH 12 37 37 HOH HOH B . E 3 HOH 13 42 42 HOH HOH B . E 3 HOH 14 43 43 HOH HOH B . E 3 HOH 15 46 46 HOH HOH B . E 3 HOH 16 47 47 HOH HOH B . E 3 HOH 17 57 57 HOH HOH B . E 3 HOH 18 58 58 HOH HOH B . E 3 HOH 19 60 60 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal AMoRE phasing . ? 1 NUCLSQ refinement . ? 2 MOSFLM 'data reduction' . ? 3 CCP4 'data reduction' . ? 4 SCALF 'data scaling' . ? 5 # _cell.entry_id 282D _cell.length_a 45.845 _cell.length_b 45.845 _cell.length_c 58.075 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 282D _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 # _exptl.entry_id 282D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 2 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.10 _exptl_crystal.density_percent_sol 55.0000 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 277.00 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.50 _exptl_crystal_grow.pdbx_details 'pH 6.50, VAPOR DIFFUSION, SITTING DROP, temperature 277.00K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 MPD ? ? ? 1 3 1 MGCL2 ? ? ? 1 4 1 SPERMINE ? ? ? 1 5 2 WATER ? ? ? 1 6 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 277.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1994-01-01 _diffrn_detector.details 'MULTILAYER MIRROR' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI(III)' _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'LURE BEAMLINE DW32' _diffrn_source.pdbx_synchrotron_site LURE _diffrn_source.pdbx_synchrotron_beamline DW32 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 282D _reflns.observed_criterion_sigma_I 2.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 25.000 _reflns.d_resolution_high 2.400 _reflns.number_obs 2492 _reflns.number_all ? _reflns.percent_possible_obs 80.000 _reflns.pdbx_Rmerge_I_obs 0.0520000 _reflns.pdbx_Rsym_value 0.0720000 _reflns.pdbx_netI_over_sigmaI 19.000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.200 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.300 _reflns_shell.d_res_low 2.500 _reflns_shell.percent_possible_all 45.00 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.1800000 _reflns_shell.meanI_over_sigI_obs 3.000 _reflns_shell.pdbx_redundancy 2.500 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 282D _refine.ls_number_reflns_obs 2365 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 18.000 _refine.ls_d_res_high 2.400 _refine.ls_percent_reflns_obs 92.000 _refine.ls_R_factor_obs 0.1830000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 25.70 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'PARTS FROM DIFFERENT SOURCES: E.G. DDF001, DDF019' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 240 _refine_hist.pdbx_number_atoms_ligand 56 _refine_hist.number_atoms_solvent 47 _refine_hist.number_atoms_total 343 _refine_hist.d_res_high 2.400 _refine_hist.d_res_low 18.000 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function n_bond_d 0.011 ? ? ? 'X-RAY DIFFRACTION' ? n_angle_d 0.023 ? ? ? 'X-RAY DIFFRACTION' ? n_planar_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_hb_or_metal_coord ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_angle_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_phos_angle_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_bond_angle_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_dihedral_angle_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_impr_tor ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_d 0.011 ? ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_angle_d 0.033 ? ? ? 'X-RAY DIFFRACTION' ? n_plane_restr 0.036 ? ? ? 'X-RAY DIFFRACTION' ? n_chiral_restr 0.170 ? ? ? 'X-RAY DIFFRACTION' ? n_singtor_nbd 0.080 ? ? ? 'X-RAY DIFFRACTION' ? n_multtor_nbd 0.230 ? ? ? 'X-RAY DIFFRACTION' ? n_xhyhbond_nbd 0.180 ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 282D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 282D _struct.title 'A CONTINOUS TRANSITION FROM A-DNA TO B-DNA IN THE 1:1 COMPLEX BETWEEN NOGALAMYCIN AND THE HEXAMER DCCCGGG' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 282D _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'RIGHT HANDED DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 282D _struct_ref.pdbx_db_accession 282D _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 282D A 1 ? 6 ? 282D 1 ? 6 ? 1 6 2 1 282D B 1 ? 6 ? 282D 7 ? 12 ? 7 12 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 6 N1 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 6 O6 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 6 N2 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 5 N1 ? ? A DC 2 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 5 O6 ? ? A DC 2 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 5 N2 ? ? A DC 2 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B DC 2 N3 ? ? A DG 5 B DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B DC 2 O2 ? ? A DG 5 B DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B DC 2 N4 ? ? A DG 5 B DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 6 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 6 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 6 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A NGM 13 ? 12 'BINDING SITE FOR RESIDUE NGM A 13' 'DRUG BINDING SITE' ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 12 DC A 2 ? DC A 2 . ? 7_555 ? 2 AC1 12 DC A 3 ? DC A 3 . ? 1_555 ? 3 AC1 12 DC A 3 ? DC A 3 . ? 7_555 ? 4 AC1 12 DG A 4 ? DG A 4 . ? 1_555 ? 5 AC1 12 DG A 5 ? DG A 5 . ? 1_555 ? 6 AC1 12 DG A 6 ? DG A 6 . ? 1_555 ? 7 AC1 12 HOH D . ? HOH A 30 . ? 1_555 ? 8 AC1 12 HOH D . ? HOH A 41 . ? 1_555 ? 9 AC1 12 HOH D . ? HOH A 53 . ? 1_555 ? 10 AC1 12 DC B 2 ? DC B 8 . ? 1_555 ? 11 AC1 12 DC B 3 ? DC B 9 . ? 1_555 ? 12 AC1 12 DG B 4 ? DG B 10 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 111.89 108.30 3.59 0.30 N 2 1 "O4'" A DC 2 ? ? "C4'" A DC 2 ? ? "C3'" A DC 2 ? ? 101.37 104.50 -3.13 0.40 N 3 1 N1 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 124.26 118.90 5.36 0.60 N 4 1 N3 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 117.46 121.90 -4.44 0.70 N 5 1 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 110.70 108.30 2.40 0.30 N 6 1 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? "C2'" A DG 4 ? ? 100.78 105.90 -5.12 0.80 N 7 1 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 114.76 108.30 6.46 0.30 N 8 1 "C3'" A DG 4 ? ? "O3'" A DG 4 ? ? P A DG 5 ? ? 128.63 119.70 8.93 1.20 Y 9 1 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 111.95 108.30 3.65 0.30 N 10 1 N1 B DC 7 ? ? C2 B DC 7 ? ? O2 B DC 7 ? ? 122.97 118.90 4.07 0.60 N 11 1 "O4'" B DC 9 ? ? "C1'" B DC 9 ? ? N1 B DC 9 ? ? 111.17 108.30 2.87 0.30 N 12 1 N1 B DC 9 ? ? C2 B DC 9 ? ? O2 B DC 9 ? ? 122.69 118.90 3.79 0.60 N 13 1 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 113.74 108.30 5.44 0.30 N 14 1 "O4'" B DG 11 ? ? "C1'" B DG 11 ? ? N9 B DG 11 ? ? 112.94 108.30 4.64 0.30 N 15 1 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? N9 B DG 12 ? ? 110.56 108.30 2.26 0.30 N # loop_ _pdbx_validate_chiral.id _pdbx_validate_chiral.PDB_model_num _pdbx_validate_chiral.auth_atom_id _pdbx_validate_chiral.label_alt_id _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_comp_id _pdbx_validate_chiral.auth_seq_id _pdbx_validate_chiral.PDB_ins_code _pdbx_validate_chiral.details _pdbx_validate_chiral.omega 1 1 C31 ? A NGM 13 ? PLANAR . 2 1 C32 ? A NGM 13 ? 'WRONG HAND' . 3 1 "C4'" ? A NGM 13 ? PLANAR . # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id DG _pdbx_validate_planes.auth_asym_id B _pdbx_validate_planes.auth_seq_id 10 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.058 _pdbx_validate_planes.type 'SIDE CHAIN' # _struct_site_keywords.site_id 'DRUG BINDING SITE' _struct_site_keywords.text INTERCALATION # loop_ _refine_B_iso.class _refine_B_iso.details _refine_B_iso.treatment _refine_B_iso.pdbx_refine_id 'ALL ATOMS' TR isotropic 'X-RAY DIFFRACTION' 'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION' # loop_ _refine_occupancy.class _refine_occupancy.treatment _refine_occupancy.pdbx_refine_id 'ALL ATOMS' fix 'X-RAY DIFFRACTION' 'ALL WATERS' fix 'X-RAY DIFFRACTION' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DC OP3 O N N 1 DC P P N N 2 DC OP1 O N N 3 DC OP2 O N N 4 DC "O5'" O N N 5 DC "C5'" C N N 6 DC "C4'" C N R 7 DC "O4'" O N N 8 DC "C3'" C N S 9 DC "O3'" O N N 10 DC "C2'" C N N 11 DC "C1'" C N R 12 DC N1 N N N 13 DC C2 C N N 14 DC O2 O N N 15 DC N3 N N N 16 DC C4 C N N 17 DC N4 N N N 18 DC C5 C N N 19 DC C6 C N N 20 DC HOP3 H N N 21 DC HOP2 H N N 22 DC "H5'" H N N 23 DC "H5''" H N N 24 DC "H4'" H N N 25 DC "H3'" H N N 26 DC "HO3'" H N N 27 DC "H2'" H N N 28 DC "H2''" H N N 29 DC "H1'" H N N 30 DC H41 H N N 31 DC H42 H N N 32 DC H5 H N N 33 DC H6 H N N 34 DG OP3 O N N 35 DG P P N N 36 DG OP1 O N N 37 DG OP2 O N N 38 DG "O5'" O N N 39 DG "C5'" C N N 40 DG "C4'" C N R 41 DG "O4'" O N N 42 DG "C3'" C N S 43 DG "O3'" O N N 44 DG "C2'" C N N 45 DG "C1'" C N R 46 DG N9 N Y N 47 DG C8 C Y N 48 DG N7 N Y N 49 DG C5 C Y N 50 DG C6 C N N 51 DG O6 O N N 52 DG N1 N N N 53 DG C2 C N N 54 DG N2 N N N 55 DG N3 N N N 56 DG C4 C Y N 57 DG HOP3 H N N 58 DG HOP2 H N N 59 DG "H5'" H N N 60 DG "H5''" H N N 61 DG "H4'" H N N 62 DG "H3'" H N N 63 DG "HO3'" H N N 64 DG "H2'" H N N 65 DG "H2''" H N N 66 DG "H1'" H N N 67 DG H8 H N N 68 DG H1 H N N 69 DG H21 H N N 70 DG H22 H N N 71 HOH O O N N 72 HOH H1 H N N 73 HOH H2 H N N 74 NGM C1 C Y N 75 NGM C2 C Y N 76 NGM C3 C Y N 77 NGM C4 C Y N 78 NGM C5 C N N 79 NGM C6 C Y N 80 NGM C7 C N S 81 NGM C8 C N N 82 NGM C9 C N S 83 NGM C10 C N R 84 NGM C11 C Y N 85 NGM C12 C N N 86 NGM C13 C N N 87 NGM C14 C N N 88 NGM C15 C N N 89 NGM C16 C Y N 90 NGM C17 C Y N 91 NGM C18 C Y N 92 NGM C19 C Y N 93 NGM C20 C Y N 94 NGM C21 C Y N 95 NGM C22 C N N 96 NGM C23 C N N 97 NGM C24 C N N 98 NGM C25 C N N 99 NGM C26 C N N 100 NGM C27 C N N 101 NGM C28 C N N 102 NGM C29 C N N 103 NGM C30 C N S 104 NGM C31 C N S 105 NGM C32 C N R 106 NGM C33 C N R 107 NGM C34 C N R 108 NGM "C1'" C N R 109 NGM "C2'" C N R 110 NGM "C3'" C N R 111 NGM "C4'" C N S 112 NGM "C5'" C N S 113 NGM N1 N N N 114 NGM O1 O N N 115 NGM O2 O N N 116 NGM O4 O N N 117 NGM O5 O N N 118 NGM O6 O N N 119 NGM O7 O N N 120 NGM O9 O N N 121 NGM O10 O N N 122 NGM O14 O N N 123 NGM O12 O N N 124 NGM O15 O N N 125 NGM O16 O N N 126 NGM "O1'" O N N 127 NGM "O2'" O N N 128 NGM "O3'" O N N 129 NGM "O4'" O N N 130 NGM H3 H N N 131 NGM H7 H N N 132 NGM H81 H N N 133 NGM H82 H N N 134 NGM H10 H N N 135 NGM H11 H N N 136 NGM H131 H N N 137 NGM H132 H N N 138 NGM H133 H N N 139 NGM H151 H N N 140 NGM H152 H N N 141 NGM H153 H N N 142 NGM H221 H N N 143 NGM H222 H N N 144 NGM H223 H N N 145 NGM H231 H N N 146 NGM H232 H N N 147 NGM H233 H N N 148 NGM H241 H N N 149 NGM H242 H N N 150 NGM H243 H N N 151 NGM H251 H N N 152 NGM H252 H N N 153 NGM H253 H N N 154 NGM H261 H N N 155 NGM H262 H N N 156 NGM H263 H N N 157 NGM H271 H N N 158 NGM H272 H N N 159 NGM H273 H N N 160 NGM H281 H N N 161 NGM H282 H N N 162 NGM H283 H N N 163 NGM H291 H N N 164 NGM H292 H N N 165 NGM H293 H N N 166 NGM H30 H N N 167 NGM H31 H N N 168 NGM H32 H N N 169 NGM H33 H N N 170 NGM "H1'" H N N 171 NGM "H2'" H N N 172 NGM "H4'" H N N 173 NGM "H5'" H N N 174 NGM HO4 H N N 175 NGM HO6 H N N 176 NGM HO9 H N N 177 NGM H15 H N N 178 NGM H16 H N N 179 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DC OP3 P sing N N 1 DC OP3 HOP3 sing N N 2 DC P OP1 doub N N 3 DC P OP2 sing N N 4 DC P "O5'" sing N N 5 DC OP2 HOP2 sing N N 6 DC "O5'" "C5'" sing N N 7 DC "C5'" "C4'" sing N N 8 DC "C5'" "H5'" sing N N 9 DC "C5'" "H5''" sing N N 10 DC "C4'" "O4'" sing N N 11 DC "C4'" "C3'" sing N N 12 DC "C4'" "H4'" sing N N 13 DC "O4'" "C1'" sing N N 14 DC "C3'" "O3'" sing N N 15 DC "C3'" "C2'" sing N N 16 DC "C3'" "H3'" sing N N 17 DC "O3'" "HO3'" sing N N 18 DC "C2'" "C1'" sing N N 19 DC "C2'" "H2'" sing N N 20 DC "C2'" "H2''" sing N N 21 DC "C1'" N1 sing N N 22 DC "C1'" "H1'" sing N N 23 DC N1 C2 sing N N 24 DC N1 C6 sing N N 25 DC C2 O2 doub N N 26 DC C2 N3 sing N N 27 DC N3 C4 doub N N 28 DC C4 N4 sing N N 29 DC C4 C5 sing N N 30 DC N4 H41 sing N N 31 DC N4 H42 sing N N 32 DC C5 C6 doub N N 33 DC C5 H5 sing N N 34 DC C6 H6 sing N N 35 DG OP3 P sing N N 36 DG OP3 HOP3 sing N N 37 DG P OP1 doub N N 38 DG P OP2 sing N N 39 DG P "O5'" sing N N 40 DG OP2 HOP2 sing N N 41 DG "O5'" "C5'" sing N N 42 DG "C5'" "C4'" sing N N 43 DG "C5'" "H5'" sing N N 44 DG "C5'" "H5''" sing N N 45 DG "C4'" "O4'" sing N N 46 DG "C4'" "C3'" sing N N 47 DG "C4'" "H4'" sing N N 48 DG "O4'" "C1'" sing N N 49 DG "C3'" "O3'" sing N N 50 DG "C3'" "C2'" sing N N 51 DG "C3'" "H3'" sing N N 52 DG "O3'" "HO3'" sing N N 53 DG "C2'" "C1'" sing N N 54 DG "C2'" "H2'" sing N N 55 DG "C2'" "H2''" sing N N 56 DG "C1'" N9 sing N N 57 DG "C1'" "H1'" sing N N 58 DG N9 C8 sing Y N 59 DG N9 C4 sing Y N 60 DG C8 N7 doub Y N 61 DG C8 H8 sing N N 62 DG N7 C5 sing Y N 63 DG C5 C6 sing N N 64 DG C5 C4 doub Y N 65 DG C6 O6 doub N N 66 DG C6 N1 sing N N 67 DG N1 C2 sing N N 68 DG N1 H1 sing N N 69 DG C2 N2 sing N N 70 DG C2 N3 doub N N 71 DG N2 H21 sing N N 72 DG N2 H22 sing N N 73 DG N3 C4 sing N N 74 HOH O H1 sing N N 75 HOH O H2 sing N N 76 NGM C1 C2 doub Y N 77 NGM C1 C16 sing Y N 78 NGM C1 O1 sing N N 79 NGM C2 C3 sing Y N 80 NGM C2 C34 sing N N 81 NGM C3 C4 doub Y N 82 NGM C3 H3 sing N N 83 NGM C4 C17 sing Y N 84 NGM C4 O4 sing N N 85 NGM C5 C17 sing N N 86 NGM C5 C18 sing N N 87 NGM C5 O5 doub N N 88 NGM C6 C18 doub Y N 89 NGM C6 C19 sing Y N 90 NGM C6 O6 sing N N 91 NGM C7 C8 sing N N 92 NGM C7 C19 sing N N 93 NGM C7 O7 sing N N 94 NGM C7 H7 sing N N 95 NGM C8 C9 sing N N 96 NGM C8 H81 sing N N 97 NGM C8 H82 sing N N 98 NGM C9 C10 sing N N 99 NGM C9 C13 sing N N 100 NGM C9 O9 sing N N 101 NGM C10 C14 sing N N 102 NGM C10 C20 sing N N 103 NGM C10 H10 sing N N 104 NGM C11 C20 sing Y N 105 NGM C11 C21 doub Y N 106 NGM C11 H11 sing N N 107 NGM C12 C16 sing N N 108 NGM C12 C21 sing N N 109 NGM C12 O12 doub N N 110 NGM C13 H131 sing N N 111 NGM C13 H132 sing N N 112 NGM C13 H133 sing N N 113 NGM C14 O10 sing N N 114 NGM C14 O14 doub N N 115 NGM C15 O10 sing N N 116 NGM C15 H151 sing N N 117 NGM C15 H152 sing N N 118 NGM C15 H153 sing N N 119 NGM C16 C17 doub Y N 120 NGM C18 C21 sing Y N 121 NGM C19 C20 doub Y N 122 NGM C22 C34 sing N N 123 NGM C22 H221 sing N N 124 NGM C22 H222 sing N N 125 NGM C22 H223 sing N N 126 NGM C23 N1 sing N N 127 NGM C23 H231 sing N N 128 NGM C23 H232 sing N N 129 NGM C23 H233 sing N N 130 NGM C24 N1 sing N N 131 NGM C24 H241 sing N N 132 NGM C24 H242 sing N N 133 NGM C24 H243 sing N N 134 NGM C25 "C5'" sing N N 135 NGM C25 H251 sing N N 136 NGM C25 H252 sing N N 137 NGM C25 H253 sing N N 138 NGM C26 "O4'" sing N N 139 NGM C26 H261 sing N N 140 NGM C26 H262 sing N N 141 NGM C26 H263 sing N N 142 NGM C27 "O3'" sing N N 143 NGM C27 H271 sing N N 144 NGM C27 H272 sing N N 145 NGM C27 H273 sing N N 146 NGM C28 "C3'" sing N N 147 NGM C28 H281 sing N N 148 NGM C28 H282 sing N N 149 NGM C28 H283 sing N N 150 NGM C29 "O2'" sing N N 151 NGM C29 H291 sing N N 152 NGM C29 H292 sing N N 153 NGM C29 H293 sing N N 154 NGM C30 C31 sing N N 155 NGM C30 O1 sing N N 156 NGM C30 O2 sing N N 157 NGM C30 H30 sing N N 158 NGM C31 C32 sing N N 159 NGM C31 O15 sing N N 160 NGM C31 H31 sing N N 161 NGM C32 C33 sing N N 162 NGM C32 N1 sing N N 163 NGM C32 H32 sing N N 164 NGM C33 C34 sing N N 165 NGM C33 O16 sing N N 166 NGM C33 H33 sing N N 167 NGM C34 O2 sing N N 168 NGM "C1'" "C2'" sing N N 169 NGM "C1'" O7 sing N N 170 NGM "C1'" "O1'" sing N N 171 NGM "C1'" "H1'" sing N N 172 NGM "C2'" "C3'" sing N N 173 NGM "C2'" "O2'" sing N N 174 NGM "C2'" "H2'" sing N N 175 NGM "C3'" "C4'" sing N N 176 NGM "C3'" "O3'" sing N N 177 NGM "C4'" "C5'" sing N N 178 NGM "C4'" "O4'" sing N N 179 NGM "C4'" "H4'" sing N N 180 NGM "C5'" "O1'" sing N N 181 NGM "C5'" "H5'" sing N N 182 NGM O4 HO4 sing N N 183 NGM O6 HO6 sing N N 184 NGM O9 HO9 sing N N 185 NGM O15 H15 sing N N 186 NGM O16 H16 sing N N 187 # _ndb_struct_conf_na.entry_id 282D _ndb_struct_conf_na.feature 'double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 6 1_555 0.393 -0.262 0.249 -2.318 -16.585 2.042 1 A_DC1:DG12_B A 1 ? B 12 ? 19 1 1 A DC 2 1_555 B DG 5 1_555 0.532 -0.297 0.229 -8.045 -8.679 -1.334 2 A_DC2:DG11_B A 2 ? B 11 ? 19 1 1 A DC 3 1_555 B DG 4 1_555 0.371 -0.310 0.041 14.002 -4.546 1.628 3 A_DC3:DG10_B A 3 ? B 10 ? 19 1 1 A DG 4 1_555 B DC 3 1_555 -0.392 -0.306 0.097 -10.843 3.301 0.691 4 A_DG4:DC9_B A 4 ? B 9 ? 19 1 1 A DG 5 1_555 B DC 2 1_555 -0.410 -0.238 0.155 -1.166 -5.661 2.319 5 A_DG5:DC8_B A 5 ? B 8 ? 19 1 1 A DG 6 1_555 B DC 1 1_555 -0.179 -0.273 0.084 2.299 -12.891 -2.322 6 A_DG6:DC7_B A 6 ? B 7 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 6 1_555 A DC 2 1_555 B DG 5 1_555 0.180 -0.793 3.489 1.827 3.600 37.193 -1.738 -0.026 3.405 5.624 -2.853 37.404 1 AA_DC1DC2:DG11DG12_BB A 1 ? B 12 ? A 2 ? B 11 ? 1 A DC 2 1_555 B DG 5 1_555 A DC 3 1_555 B DG 4 1_555 0.577 -0.162 2.903 3.446 4.755 29.645 -1.175 -0.483 2.890 9.181 -6.653 30.208 2 AA_DC2DC3:DG10DG11_BB A 2 ? B 11 ? A 3 ? B 10 ? 1 A DC 3 1_555 B DG 4 1_555 A DG 4 1_555 B DC 3 1_555 0.264 -0.675 6.924 4.011 -0.701 15.360 -1.335 5.376 6.792 -2.566 -14.673 15.887 3 AA_DC3DG4:DC9DG10_BB A 3 ? B 10 ? A 4 ? B 9 ? 1 A DG 4 1_555 B DC 3 1_555 A DG 5 1_555 B DC 2 1_555 -0.062 -0.118 3.286 -2.589 4.532 31.538 -1.038 -0.358 3.233 8.267 4.723 31.956 4 AA_DG4DG5:DC8DC9_BB A 4 ? B 9 ? A 5 ? B 8 ? 1 A DG 5 1_555 B DC 2 1_555 A DG 6 1_555 B DC 1 1_555 -0.588 -0.885 3.274 -0.513 4.661 38.095 -1.920 0.832 3.155 7.107 0.782 38.372 5 AA_DG5DG6:DC7DC8_BB A 5 ? B 8 ? A 6 ? B 7 ? # loop_ _pdbx_initial_refinement_model.accession_code _pdbx_initial_refinement_model.id _pdbx_initial_refinement_model.entity_id_list _pdbx_initial_refinement_model.type _pdbx_initial_refinement_model.source_name _pdbx_initial_refinement_model.details 1D12 1 ? 'experimental model' PDB 'PARTS FROM DIFFERENT SOURCES: E.G. DDF001, DDF019' 1D11 2 ? 'experimental model' PDB 'PARTS FROM DIFFERENT SOURCES: E.G. DDF001, DDF019' # _atom_sites.entry_id 282D _atom_sites.fract_transf_matrix[1][1] 0.021811 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021811 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017219 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_