HEADER VIRAL PROTEIN 10-FEB-26 28NV TITLE HUMAN ADENOVIRUS TYPE C5 KNOB PROTEIN WITH THE KO1 MUTATION AND A20 TITLE 2 INSERTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: FIBER PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SPIKE,PROTEIN IV; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN ADENOVIRUS 5; SOURCE 3 ORGANISM_TAXID: 28285; SOURCE 4 GENE: L5; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ADENOVIRUS, C5, FIBER KNOB PROTEIN, KO1 MUTATION, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.J.RIZKALLAH,E.A.SWIFT,A.L.PARKER REVDAT 1 25-MAR-26 28NV 0 JRNL AUTH P.J.RIZKALLAH,E.A.SWIFT JRNL TITL HUMAN ADENOVIRUS TYPE C5 KNOB PROTEIN WITH THE KO1 MUTATION JRNL TITL 2 AND A20 INSERTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.27 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.27 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 51794 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.171 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2725 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.27 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.30 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3689 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.3520 REMARK 3 BIN FREE R VALUE SET COUNT : 201 REMARK 3 BIN FREE R VALUE : 0.3760 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1360 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.038 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.039 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.033 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.616 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.979 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.969 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1468 ; 0.011 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 1350 ; 0.001 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2009 ; 1.634 ; 1.643 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3122 ; 1.473 ; 1.573 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 190 ; 7.187 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 62 ;39.003 ;24.355 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 231 ;10.769 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 3 ; 7.805 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 203 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1703 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 331 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 742 ; 0.855 ; 1.195 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 741 ; 0.855 ; 1.194 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 938 ; 1.416 ; 1.790 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 939 ; 1.415 ; 1.791 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 726 ; 1.205 ; 1.334 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 727 ; 1.204 ; 1.334 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1072 ; 1.875 ; 1.936 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1641 ; 4.340 ;15.252 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1600 ; 3.950 ;14.475 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 390 A 590 REMARK 3 ORIGIN FOR THE GROUP (A): 12.9650 8.0560 -16.5655 REMARK 3 T TENSOR REMARK 3 T11: 0.0055 T22: 0.0221 REMARK 3 T33: 0.0251 T12: -0.0054 REMARK 3 T13: -0.0075 T23: -0.0063 REMARK 3 L TENSOR REMARK 3 L11: 0.9121 L22: 0.5171 REMARK 3 L33: 1.8086 L12: 0.1284 REMARK 3 L13: -0.5849 L23: -0.1207 REMARK 3 S TENSOR REMARK 3 S11: -0.0004 S12: 0.1097 S13: -0.0587 REMARK 3 S21: -0.0282 S22: 0.0055 S23: 0.0929 REMARK 3 S31: 0.0776 S32: -0.1815 S33: -0.0051 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 28NV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-FEB-26. REMARK 100 THE DEPOSITION ID IS D_1292152416. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-SEP-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97628 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : DIALS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54652 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.270 REMARK 200 RESOLUTION RANGE LOW (A) : 60.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 32.80 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.27 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 8.60 REMARK 200 R MERGE FOR SHELL (I) : 2.24000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM MALONATE DIBASIC REMARK 280 MONOHYDRATE, 0.1 M BIS-TRIS PROPANE, 20 % W/V PEG 3350, PH 7.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 42.64150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.64150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.64150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.64150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.64150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.64150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 42.64150 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 42.64150 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 42.64150 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 42.64150 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 42.64150 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 42.64150 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 42.64150 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 42.64150 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 42.64150 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 42.64150 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 42.64150 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 42.64150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 42.64150 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 42.64150 REMARK 350 BIOMT3 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 42.64150 REMARK 350 BIOMT2 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 -42.64150 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 702 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 703 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 850 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 885 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 886 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 890 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 538A REMARK 465 GLN A 538B REMARK 465 GLU A 538C REMARK 465 THR A 538D REMARK 465 GLY A 538E REMARK 465 ASP A 538F REMARK 465 THR A 538G REMARK 465 THR A 538H REMARK 465 ASN A 538I REMARK 465 ALA A 538J REMARK 465 VAL A 538K REMARK 465 PRO A 538L REMARK 465 ASN A 538M REMARK 465 LEU A 538N REMARK 465 ARG A 538O REMARK 465 GLY A 538P REMARK 465 ASP A 538Q REMARK 465 LEU A 538R REMARK 465 GLN A 538S REMARK 465 VAL A 538T REMARK 465 LEU A 538U REMARK 465 ALA A 538V REMARK 465 GLN A 538W REMARK 465 LYS A 538X REMARK 465 VAL A 538Y REMARK 465 ALA A 538Z REMARK 465 ARG A 539A REMARK 465 THR A 539B REMARK 465 PRO A 539C REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG1 THR A 400 OG SER A 430 6555 1.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 404 157.54 72.88 REMARK 500 CYS A 428 68.40 -116.77 REMARK 500 LEU A 485 -149.57 -126.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 890 DISTANCE = 6.64 ANGSTROMS DBREF 28NV A 397 581 UNP P11818 SPIKE_ADE05 397 581 SEQADV 28NV GLU A 408 UNP P11818 SER 408 CONFLICT SEQADV 28NV ALA A 409 UNP P11818 PRO 409 CONFLICT SEQADV 28NV THR A 437 UNP P11818 SER 437 CONFLICT SEQADV 28NV ASP A 464 UNP P11818 ASN 464 CONFLICT SEQADV 28NV THR A 538H UNP P11818 INSERTION SEQADV 28NV ASN A 538I UNP P11818 INSERTION SEQADV 28NV ALA A 538J UNP P11818 INSERTION SEQADV 28NV VAL A 538K UNP P11818 INSERTION SEQADV 28NV PRO A 538L UNP P11818 INSERTION SEQADV 28NV ASN A 538M UNP P11818 INSERTION SEQADV 28NV LEU A 538N UNP P11818 INSERTION SEQADV 28NV ARG A 538O UNP P11818 INSERTION SEQADV 28NV GLY A 538P UNP P11818 INSERTION SEQADV 28NV ASP A 538Q UNP P11818 INSERTION SEQADV 28NV LEU A 538R UNP P11818 INSERTION SEQADV 28NV GLN A 538S UNP P11818 INSERTION SEQADV 28NV VAL A 538T UNP P11818 INSERTION SEQADV 28NV LEU A 538U UNP P11818 INSERTION SEQADV 28NV ALA A 538V UNP P11818 INSERTION SEQADV 28NV GLN A 538W UNP P11818 INSERTION SEQADV 28NV LYS A 538X UNP P11818 INSERTION SEQADV 28NV VAL A 538Y UNP P11818 INSERTION SEQADV 28NV ALA A 538Z UNP P11818 INSERTION SEQADV 28NV ARG A 539A UNP P11818 INSERTION SEQRES 1 A 205 ASP LYS LEU THR LEU TRP THR THR PRO ALA PRO GLU ALA SEQRES 2 A 205 ASN CYS ARG LEU ASN ALA GLU LYS ASP ALA LYS LEU THR SEQRES 3 A 205 LEU VAL LEU THR LYS CYS GLY SER GLN ILE LEU ALA THR SEQRES 4 A 205 VAL THR VAL LEU ALA VAL LYS GLY SER LEU ALA PRO ILE SEQRES 5 A 205 SER GLY THR VAL GLN SER ALA HIS LEU ILE ILE ARG PHE SEQRES 6 A 205 ASP GLU ASP GLY VAL LEU LEU ASN ASN SER PHE LEU ASP SEQRES 7 A 205 PRO GLU TYR TRP ASN PHE ARG ASN GLY ASP LEU THR GLU SEQRES 8 A 205 GLY THR ALA TYR THR ASN ALA VAL GLY PHE MET PRO ASN SEQRES 9 A 205 LEU SER ALA TYR PRO LYS SER HIS GLY LYS THR ALA LYS SEQRES 10 A 205 SER ASN ILE VAL SER GLN VAL TYR LEU ASN GLY ASP LYS SEQRES 11 A 205 THR LYS PRO VAL THR LEU THR ILE THR LEU ASN GLY THR SEQRES 12 A 205 GLN GLU THR GLY ASP THR THR ASN ALA VAL PRO ASN LEU SEQRES 13 A 205 ARG GLY ASP LEU GLN VAL LEU ALA GLN LYS VAL ALA ARG SEQRES 14 A 205 THR PRO SER ALA TYR SER MET SER PHE SER TRP ASP TRP SEQRES 15 A 205 SER GLY HIS ASN TYR ILE ASN GLU ILE PHE ALA THR SER SEQRES 16 A 205 SER TYR THR PHE SER TYR ILE ALA GLN GLU HET EDO A 601 4 HET EDO A 602 4 HET EDO A 603 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO 3(C2 H6 O2) FORMUL 5 HOH *190(H2 O) HELIX 1 AA1 LYS A 442 ALA A 446 5 5 HELIX 2 AA2 ALA A 494 MET A 498 5 5 HELIX 3 AA3 THR A 511 LYS A 513 5 3 HELIX 4 AA4 ASN A 523 ASP A 525 5 3 SHEET 1 AA1 6 LEU A 485 THR A 486 0 SHEET 2 AA1 6 ASN A 479 ASN A 482 -1 N ASN A 482 O LEU A 485 SHEET 3 AA1 6 THR A 400 TRP A 402 -1 N TRP A 402 O ASN A 479 SHEET 4 AA1 6 ALA A 419 CYS A 428 -1 O LEU A 425 N LEU A 401 SHEET 5 AA1 6 GLN A 431 ALA A 440 -1 O LEU A 433 N THR A 426 SHEET 6 AA1 6 TYR A 573 ILE A 578 -1 O PHE A 575 N ALA A 434 SHEET 1 AA2 4 SER A 454 PHE A 461 0 SHEET 2 AA2 4 TYR A 550 ASP A 557 -1 O MET A 552 N ILE A 459 SHEET 3 AA2 4 PRO A 529 LEU A 536 -1 N THR A 533 O SER A 555 SHEET 4 AA2 4 ASN A 515 TYR A 521 -1 N ILE A 516 O ILE A 534 CISPEP 1 ALA A 446 PRO A 447 0 1.30 CRYST1 85.283 85.283 85.283 90.00 90.00 90.00 P 21 3 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011726 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011726 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011726 0.00000 CONECT 1421 1422 1423 CONECT 1422 1421 CONECT 1423 1421 1424 CONECT 1424 1423 CONECT 1425 1426 1427 CONECT 1426 1425 CONECT 1427 1425 1428 CONECT 1428 1427 CONECT 1429 1430 1431 CONECT 1430 1429 CONECT 1431 1429 1432 CONECT 1432 1431 MASTER 392 0 3 4 10 0 0 6 1562 1 12 16 END