HEADER VIRAL PROTEIN 25-FEB-26 28WR TITLE CRYSTAL STRUCTURE OF THE NOROVIRUS GII.17 P DOMAIN IN COMPLEX WITH TITLE 2 LACTO-N-DIFUCOHEXAOSE I COMPND MOL_ID: 1; COMPND 2 MOLECULE: VP1; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: NOROVIRUS P DOMAIN FROM GII.17 STRAIN RESIDUES 224-530 COMPND 6 GENBANK: PQ336944.1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOROVIRUS GII.17; SOURCE 3 ORGANISM_TAXID: 552592; SOURCE 4 STRAIN: GII.17; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PBADM41 KEYWDS VIRAL LECTIN DOMAIN, HMOS, NOROVIRUS, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.PISAPIA,A.VARROT REVDAT 1 11-NOV-26 28WR 0 JRNL AUTH L.PISAPIA,H.N.FLATAU,S.LIN,N.KHANZHIN,A.IMBERTY,M.FRAGAI, JRNL AUTH 2 J.ANGULO,A.VARROT JRNL TITL CRYSTAL STRUCTURE OF THE NOROVIRUS GII.17 P DOMAIN IN JRNL TITL 2 COMPLEX WITH LACTO-N-DIFUCOHEXAOSE I JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0430 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 234893 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.138 REMARK 3 FREE R VALUE : 0.161 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 12522 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.13 REMARK 3 REFLECTION IN BIN (WORKING SET) : 17365 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.59 REMARK 3 BIN R VALUE (WORKING SET) : 0.2960 REMARK 3 BIN FREE R VALUE SET COUNT : 949 REMARK 3 BIN FREE R VALUE : 0.3160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4786 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 136 REMARK 3 SOLVENT ATOMS : 1049 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 8.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.94400 REMARK 3 B22 (A**2) : -1.40500 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.78700 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.028 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.029 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.022 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.069 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.978 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.972 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5166 ; 0.012 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 4633 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7097 ; 1.697 ; 1.800 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10723 ; 0.654 ; 1.730 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 633 ; 6.987 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 30 ;11.073 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 739 ;10.473 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 798 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6174 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1230 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 832 ; 0.203 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 70 ; 0.202 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2508 ; 0.183 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 696 ; 0.144 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2507 ; 4.047 ; 1.238 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2507 ; 4.047 ; 1.238 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3149 ; 5.609 ; 2.229 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3150 ; 5.609 ; 2.229 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2659 ; 5.689 ; 1.470 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2660 ; 5.688 ; 1.470 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3948 ; 7.897 ; 2.613 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3949 ; 7.896 ; 2.613 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 9799 ; 4.622 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 28WR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-FEB-26. REMARK 100 THE DEPOSITION ID IS D_1292154647. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-FEB-25 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.8.2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 247453 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.100 REMARK 200 RESOLUTION RANGE LOW (A) : 47.240 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.83100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: SQUARE/RECTANGULAR PLATE-SHAPED CRYSTALS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MAGNESIUM ACETATE, 14% PSM, 0.1 REMARK 280 M TRIS PH 8.5. CRYO: 30% PSM. 20MM LIGAND, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 42.96150 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 221 REMARK 465 ALA B 222 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET B 223 N CA CB CG SD CE REMARK 470 ASP B 295 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 844 O HOH B 965 2.07 REMARK 500 O THR B 483 O HOH B 601 2.08 REMARK 500 O HOH A 993 O HOH A 1068 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 338 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 MET A 414 CG - SD - CE ANGL. DEV. = -10.5 DEGREES REMARK 500 TYR A 475 CB - CG - CD2 ANGL. DEV. = 3.9 DEGREES REMARK 500 TYR A 475 CB - CG - CD1 ANGL. DEV. = -4.6 DEGREES REMARK 500 ARG A 491 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 491 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG B 384 NE - CZ - NH2 ANGL. DEV. = 4.9 DEGREES REMARK 500 ARG B 399 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 260 42.45 -152.17 REMARK 500 ASP A 295 59.12 -91.86 REMARK 500 ASP A 317 55.98 -90.52 REMARK 500 SER A 439 46.16 -101.74 REMARK 500 VAL A 519 -147.58 -116.15 REMARK 500 GLN B 260 43.30 -150.84 REMARK 500 ASP B 393 79.43 -112.23 REMARK 500 ASP B 516 -64.08 -105.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 289 0.13 SIDE CHAIN REMARK 500 ARG A 433 0.08 SIDE CHAIN REMARK 500 ARG A 491 0.20 SIDE CHAIN REMARK 500 ARG B 433 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1071 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A1072 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH A1073 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH A1074 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH A1075 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH A1076 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH A1078 DISTANCE = 6.21 ANGSTROMS REMARK 525 HOH A1079 DISTANCE = 6.21 ANGSTROMS REMARK 525 HOH A1080 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH A1081 DISTANCE = 6.28 ANGSTROMS REMARK 525 HOH A1082 DISTANCE = 6.31 ANGSTROMS REMARK 525 HOH A1083 DISTANCE = 6.35 ANGSTROMS REMARK 525 HOH A1084 DISTANCE = 6.38 ANGSTROMS REMARK 525 HOH A1085 DISTANCE = 6.50 ANGSTROMS REMARK 525 HOH A1086 DISTANCE = 6.51 ANGSTROMS REMARK 525 HOH A1087 DISTANCE = 6.73 ANGSTROMS REMARK 525 HOH B1129 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH B1130 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH B1131 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH B1133 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH B1134 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH B1135 DISTANCE = 6.16 ANGSTROMS REMARK 525 HOH B1137 DISTANCE = 6.25 ANGSTROMS REMARK 525 HOH B1138 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH B1140 DISTANCE = 6.46 ANGSTROMS REMARK 525 HOH B1141 DISTANCE = 6.59 ANGSTROMS REMARK 525 HOH B1143 DISTANCE = 6.71 ANGSTROMS REMARK 525 HOH B1144 DISTANCE = 6.79 ANGSTROMS REMARK 525 HOH B1145 DISTANCE = 6.82 ANGSTROMS REMARK 525 HOH B1147 DISTANCE = 6.86 ANGSTROMS REMARK 525 HOH B1151 DISTANCE = 8.20 ANGSTROMS DBREF1 28WR A 225 528 UNP A0A1C9M2L7_NORV DBREF2 28WR A A0A1C9M2L7 225 528 DBREF1 28WR B 225 528 UNP A0A1C9M2L7_NORV DBREF2 28WR B A0A1C9M2L7 225 528 SEQADV 28WR GLY A 221 UNP A0A1C9M2L EXPRESSION TAG SEQADV 28WR ALA A 222 UNP A0A1C9M2L EXPRESSION TAG SEQADV 28WR MET A 223 UNP A0A1C9M2L EXPRESSION TAG SEQADV 28WR ALA A 224 UNP A0A1C9M2L EXPRESSION TAG SEQADV 28WR MET A 334 UNP A0A1C9M2L VAL 334 CONFLICT SEQADV 28WR SER A 350 UNP A0A1C9M2L ALA 350 CONFLICT SEQADV 28WR ARG A 361 UNP A0A1C9M2L LYS 361 CONFLICT SEQADV 28WR LYS A 372 UNP A0A1C9M2L ARG 372 CONFLICT SEQADV 28WR GLN A 396 UNP A0A1C9M2L HIS 396 CONFLICT SEQADV 28WR PHE A 431 UNP A0A1C9M2L LEU 431 CONFLICT SEQADV 28WR SER A 435 UNP A0A1C9M2L PHE 435 CONFLICT SEQADV 28WR GLU A 469 UNP A0A1C9M2L ASP 469 CONFLICT SEQADV 28WR GLY B 221 UNP A0A1C9M2L EXPRESSION TAG SEQADV 28WR ALA B 222 UNP A0A1C9M2L EXPRESSION TAG SEQADV 28WR MET B 223 UNP A0A1C9M2L EXPRESSION TAG SEQADV 28WR ALA B 224 UNP A0A1C9M2L EXPRESSION TAG SEQADV 28WR MET B 334 UNP A0A1C9M2L VAL 334 CONFLICT SEQADV 28WR SER B 350 UNP A0A1C9M2L ALA 350 CONFLICT SEQADV 28WR ARG B 361 UNP A0A1C9M2L LYS 361 CONFLICT SEQADV 28WR LYS B 372 UNP A0A1C9M2L ARG 372 CONFLICT SEQADV 28WR GLN B 396 UNP A0A1C9M2L HIS 396 CONFLICT SEQADV 28WR PHE B 431 UNP A0A1C9M2L LEU 431 CONFLICT SEQADV 28WR SER B 435 UNP A0A1C9M2L PHE 435 CONFLICT SEQADV 28WR GLU B 469 UNP A0A1C9M2L ASP 469 CONFLICT SEQRES 1 A 308 GLY ALA MET ALA LYS PRO PHE SER LEU PRO ILE LEU THR SEQRES 2 A 308 LEU SER GLU LEU THR ASN SER ARG PHE PRO VAL PRO ILE SEQRES 3 A 308 ASP SER LEU PHE THR ALA GLN ASN ASN VAL LEU GLN VAL SEQRES 4 A 308 GLN CYS GLN ASN GLY ARG CYS THR LEU ASP GLY GLU LEU SEQRES 5 A 308 GLN GLY THR THR GLN LEU LEU PRO SER GLY ILE CYS ALA SEQRES 6 A 308 PHE ARG GLY ARG VAL THR ALA GLU THR ASP ASN PRO ASP SEQRES 7 A 308 LYS TRP HIS MET GLN LEU GLN ASN LEU ASN GLY THR THR SEQRES 8 A 308 TYR ASP PRO THR ASP ASP VAL PRO ALA PRO LEU GLY THR SEQRES 9 A 308 PRO ASP PHE LYS GLY VAL VAL PHE GLY MET ALA SER GLN SEQRES 10 A 308 ARG ASN VAL GLY ASN ASP ALA PRO GLY SER THR ARG SER SEQRES 11 A 308 HIS GLU ALA VAL ILE SER THR TYR SER PRO ARG PHE VAL SEQRES 12 A 308 PRO LYS LEU GLY SER VAL ASN PHE LYS SER ASN ASP ASP SEQRES 13 A 308 ASP PHE GLN LEU GLN PRO THR ARG PHE THR PRO VAL GLY SEQRES 14 A 308 ILE ASN ASP ASP GLY ASN GLN PRO PHE ARG GLN TRP GLU SEQRES 15 A 308 LEU PRO ASP TYR SER GLY VAL LEU THR LEU ASN MET ASN SEQRES 16 A 308 LEU ALA PRO PRO VAL ALA PRO ASN PHE PRO GLY GLU GLN SEQRES 17 A 308 LEU LEU PHE PHE ARG SER SER VAL PRO CYS SER GLY GLY SEQRES 18 A 308 TYR ASN GLN GLY ILE ILE ASP CYS LEU ILE PRO GLN GLU SEQRES 19 A 308 TRP ILE GLN HIS PHE TYR GLN GLU SER ALA PRO SER GLN SEQRES 20 A 308 SER GLU VAL ALA LEU ILE ARG TYR VAL ASN PRO ASP THR SEQRES 21 A 308 GLY ARG THR LEU PHE GLU ALA LYS LEU HIS ARG SER GLY SEQRES 22 A 308 TYR ILE THR VAL ALA HIS SER GLY ASP TYR PRO LEU VAL SEQRES 23 A 308 VAL PRO ALA ASN GLY TYR PHE ARG PHE ASP SER TRP VAL SEQRES 24 A 308 ASN GLN PHE TYR SER LEU ALA PRO MET SEQRES 1 B 308 GLY ALA MET ALA LYS PRO PHE SER LEU PRO ILE LEU THR SEQRES 2 B 308 LEU SER GLU LEU THR ASN SER ARG PHE PRO VAL PRO ILE SEQRES 3 B 308 ASP SER LEU PHE THR ALA GLN ASN ASN VAL LEU GLN VAL SEQRES 4 B 308 GLN CYS GLN ASN GLY ARG CYS THR LEU ASP GLY GLU LEU SEQRES 5 B 308 GLN GLY THR THR GLN LEU LEU PRO SER GLY ILE CYS ALA SEQRES 6 B 308 PHE ARG GLY ARG VAL THR ALA GLU THR ASP ASN PRO ASP SEQRES 7 B 308 LYS TRP HIS MET GLN LEU GLN ASN LEU ASN GLY THR THR SEQRES 8 B 308 TYR ASP PRO THR ASP ASP VAL PRO ALA PRO LEU GLY THR SEQRES 9 B 308 PRO ASP PHE LYS GLY VAL VAL PHE GLY MET ALA SER GLN SEQRES 10 B 308 ARG ASN VAL GLY ASN ASP ALA PRO GLY SER THR ARG SER SEQRES 11 B 308 HIS GLU ALA VAL ILE SER THR TYR SER PRO ARG PHE VAL SEQRES 12 B 308 PRO LYS LEU GLY SER VAL ASN PHE LYS SER ASN ASP ASP SEQRES 13 B 308 ASP PHE GLN LEU GLN PRO THR ARG PHE THR PRO VAL GLY SEQRES 14 B 308 ILE ASN ASP ASP GLY ASN GLN PRO PHE ARG GLN TRP GLU SEQRES 15 B 308 LEU PRO ASP TYR SER GLY VAL LEU THR LEU ASN MET ASN SEQRES 16 B 308 LEU ALA PRO PRO VAL ALA PRO ASN PHE PRO GLY GLU GLN SEQRES 17 B 308 LEU LEU PHE PHE ARG SER SER VAL PRO CYS SER GLY GLY SEQRES 18 B 308 TYR ASN GLN GLY ILE ILE ASP CYS LEU ILE PRO GLN GLU SEQRES 19 B 308 TRP ILE GLN HIS PHE TYR GLN GLU SER ALA PRO SER GLN SEQRES 20 B 308 SER GLU VAL ALA LEU ILE ARG TYR VAL ASN PRO ASP THR SEQRES 21 B 308 GLY ARG THR LEU PHE GLU ALA LYS LEU HIS ARG SER GLY SEQRES 22 B 308 TYR ILE THR VAL ALA HIS SER GLY ASP TYR PRO LEU VAL SEQRES 23 B 308 VAL PRO ALA ASN GLY TYR PHE ARG PHE ASP SER TRP VAL SEQRES 24 B 308 ASN GLN PHE TYR SER LEU ALA PRO MET HET BGC C 1 12 HET GAL C 2 11 HET NAG C 3 14 HET GAL C 4 11 HET FUC C 5 10 HET FUC C 6 10 HET BGC D 1 12 HET GAL D 2 11 HET NAG D 3 14 HET GAL D 4 11 HET FUC D 5 10 HET FUC D 6 10 HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 3 BGC 2(C6 H12 O6) FORMUL 3 GAL 4(C6 H12 O6) FORMUL 3 NAG 2(C8 H15 N O6) FORMUL 3 FUC 4(C6 H12 O5) FORMUL 5 HOH *1049(H2 O) HELIX 1 AA1 THR A 233 LEU A 237 5 5 HELIX 2 AA2 LEU A 279 ILE A 283 5 5 HELIX 3 AA3 PRO A 452 SER A 463 1 12 HELIX 4 AA4 THR B 233 LEU B 237 5 5 HELIX 5 AA5 LEU B 279 ILE B 283 5 5 HELIX 6 AA6 PRO B 452 SER B 463 1 12 SHEET 1 AA1 4 ILE A 446 CYS A 449 0 SHEET 2 AA1 4 GLU A 427 SER A 435 -1 N SER A 434 O ILE A 447 SHEET 3 AA1 4 SER A 248 THR A 251 -1 N PHE A 250 O PHE A 431 SHEET 4 AA1 4 TYR A 503 PRO A 504 -1 O TYR A 503 N THR A 251 SHEET 1 AA2 6 ILE A 446 CYS A 449 0 SHEET 2 AA2 6 GLU A 427 SER A 435 -1 N SER A 434 O ILE A 447 SHEET 3 AA2 6 TYR A 494 ALA A 498 -1 O VAL A 497 N GLN A 428 SHEET 4 AA2 6 THR A 483 HIS A 490 -1 N HIS A 490 O TYR A 494 SHEET 5 AA2 6 VAL A 470 VAL A 476 -1 N ALA A 471 O LEU A 489 SHEET 6 AA2 6 TYR A 512 VAL A 519 -1 O SER A 517 N LEU A 472 SHEET 1 AA3 6 THR A 348 SER A 356 0 SHEET 2 AA3 6 VAL A 330 ARG A 338 -1 N GLN A 337 O ARG A 349 SHEET 3 AA3 6 PRO A 382 ASN A 391 -1 O VAL A 388 N PHE A 332 SHEET 4 AA3 6 PHE A 286 GLU A 293 -1 N PHE A 286 O PHE A 385 SHEET 5 AA3 6 TRP A 300 GLN A 305 -1 O GLN A 305 N ARG A 287 SHEET 6 AA3 6 SER A 368 PHE A 371 -1 O VAL A 369 N MET A 302 SHEET 1 AA4 4 ILE B 446 CYS B 449 0 SHEET 2 AA4 4 GLU B 427 SER B 435 -1 N SER B 434 O ILE B 447 SHEET 3 AA4 4 SER B 248 THR B 251 -1 N PHE B 250 O PHE B 431 SHEET 4 AA4 4 TYR B 503 PRO B 504 -1 O TYR B 503 N THR B 251 SHEET 1 AA5 6 ILE B 446 CYS B 449 0 SHEET 2 AA5 6 GLU B 427 SER B 435 -1 N SER B 434 O ILE B 447 SHEET 3 AA5 6 TYR B 494 ALA B 498 -1 O VAL B 497 N GLN B 428 SHEET 4 AA5 6 THR B 483 HIS B 490 -1 N HIS B 490 O TYR B 494 SHEET 5 AA5 6 VAL B 470 VAL B 476 -1 N TYR B 475 O LEU B 484 SHEET 6 AA5 6 TYR B 512 VAL B 519 -1 O SER B 517 N LEU B 472 SHEET 1 AA6 6 THR B 348 SER B 356 0 SHEET 2 AA6 6 VAL B 330 ARG B 338 -1 N GLN B 337 O ARG B 349 SHEET 3 AA6 6 PRO B 382 ASN B 391 -1 O VAL B 388 N PHE B 332 SHEET 4 AA6 6 PHE B 286 GLU B 293 -1 N PHE B 286 O PHE B 385 SHEET 5 AA6 6 TRP B 300 GLN B 305 -1 O GLN B 305 N ARG B 287 SHEET 6 AA6 6 SER B 368 PHE B 371 -1 O VAL B 369 N MET B 302 LINK O4 BGC C 1 C1 GAL C 2 1555 1555 1.39 LINK O3 GAL C 2 C1 NAG C 3 1555 1555 1.40 LINK O3 NAG C 3 C1 GAL C 4 1555 1555 1.39 LINK O4 NAG C 3 C1 FUC C 6 1555 1555 1.37 LINK O2 GAL C 4 C1 FUC C 5 1555 1555 1.40 LINK O4 BGC D 1 C1 GAL D 2 1555 1555 1.39 LINK O3 GAL D 2 C1 NAG D 3 1555 1555 1.40 LINK O3 NAG D 3 C1 GAL D 4 1555 1555 1.40 LINK O4 NAG D 3 C1 FUC D 6 1555 1555 1.40 LINK O2 GAL D 4 C1 FUC D 5 1555 1555 1.39 CRYST1 58.811 85.923 64.213 90.00 105.91 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017004 0.000000 0.004846 0.00000 SCALE2 0.000000 0.011638 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016193 0.00000 CONECT 4874 4875 4879 4881 CONECT 4875 4874 4876 4882 CONECT 4876 4875 4877 4883 CONECT 4877 4876 4878 4884 CONECT 4878 4877 4885 CONECT 4879 4874 4880 4884 CONECT 4880 4879 CONECT 4881 4874 CONECT 4882 4875 CONECT 4883 4876 4886 CONECT 4884 4877 4879 CONECT 4885 4878 CONECT 4886 4883 4887 4895 CONECT 4887 4886 4888 4892 CONECT 4888 4887 4889 4893 CONECT 4889 4888 4890 4894 CONECT 4890 4889 4891 4895 CONECT 4891 4890 4896 CONECT 4892 4887 CONECT 4893 4888 4897 CONECT 4894 4889 CONECT 4895 4886 4890 CONECT 4896 4891 CONECT 4897 4893 4898 4908 CONECT 4898 4897 4899 4905 CONECT 4899 4898 4900 4906 CONECT 4900 4899 4901 4907 CONECT 4901 4900 4902 4908 CONECT 4902 4901 4909 CONECT 4903 4904 4905 4910 CONECT 4904 4903 CONECT 4905 4898 4903 CONECT 4906 4899 4911 CONECT 4907 4900 4932 CONECT 4908 4897 4901 CONECT 4909 4902 CONECT 4910 4903 CONECT 4911 4906 4912 4920 CONECT 4912 4911 4913 4917 CONECT 4913 4912 4914 4918 CONECT 4914 4913 4915 4919 CONECT 4915 4914 4916 4920 CONECT 4916 4915 4921 CONECT 4917 4912 4922 CONECT 4918 4913 CONECT 4919 4914 CONECT 4920 4911 4915 CONECT 4921 4916 CONECT 4922 4917 4923 4931 CONECT 4923 4922 4924 4928 CONECT 4924 4923 4925 4929 CONECT 4925 4924 4926 4930 CONECT 4926 4925 4927 4931 CONECT 4927 4926 CONECT 4928 4923 CONECT 4929 4924 CONECT 4930 4925 CONECT 4931 4922 4926 CONECT 4932 4907 4933 4941 CONECT 4933 4932 4934 4938 CONECT 4934 4933 4935 4939 CONECT 4935 4934 4936 4940 CONECT 4936 4935 4937 4941 CONECT 4937 4936 CONECT 4938 4933 CONECT 4939 4934 CONECT 4940 4935 CONECT 4941 4932 4936 CONECT 4942 4943 4947 4949 CONECT 4943 4942 4944 4950 CONECT 4944 4943 4945 4951 CONECT 4945 4944 4946 4952 CONECT 4946 4945 4953 CONECT 4947 4942 4948 4952 CONECT 4948 4947 CONECT 4949 4942 CONECT 4950 4943 CONECT 4951 4944 4954 CONECT 4952 4945 4947 CONECT 4953 4946 CONECT 4954 4951 4955 4963 CONECT 4955 4954 4956 4960 CONECT 4956 4955 4957 4961 CONECT 4957 4956 4958 4962 CONECT 4958 4957 4959 4963 CONECT 4959 4958 4964 CONECT 4960 4955 CONECT 4961 4956 4965 CONECT 4962 4957 CONECT 4963 4954 4958 CONECT 4964 4959 CONECT 4965 4961 4966 4976 CONECT 4966 4965 4967 4973 CONECT 4967 4966 4968 4974 CONECT 4968 4967 4969 4975 CONECT 4969 4968 4970 4976 CONECT 4970 4969 4977 CONECT 4971 4972 4973 4978 CONECT 4972 4971 CONECT 4973 4966 4971 CONECT 4974 4967 4979 CONECT 4975 4968 5000 CONECT 4976 4965 4969 CONECT 4977 4970 CONECT 4978 4971 CONECT 4979 4974 4980 4988 CONECT 4980 4979 4981 4985 CONECT 4981 4980 4982 4986 CONECT 4982 4981 4983 4987 CONECT 4983 4982 4984 4988 CONECT 4984 4983 4989 CONECT 4985 4980 4990 CONECT 4986 4981 CONECT 4987 4982 CONECT 4988 4979 4983 CONECT 4989 4984 CONECT 4990 4985 4991 4999 CONECT 4991 4990 4992 4996 CONECT 4992 4991 4993 4997 CONECT 4993 4992 4994 4998 CONECT 4994 4993 4995 4999 CONECT 4995 4994 CONECT 4996 4991 CONECT 4997 4992 CONECT 4998 4993 CONECT 4999 4990 4994 CONECT 5000 4975 5001 5009 CONECT 5001 5000 5002 5006 CONECT 5002 5001 5003 5007 CONECT 5003 5002 5004 5008 CONECT 5004 5003 5005 5009 CONECT 5005 5004 CONECT 5006 5001 CONECT 5007 5002 CONECT 5008 5003 CONECT 5009 5000 5004 MASTER 374 0 12 6 32 0 0 6 5971 2 136 48 END