data_28XG # _entry.id 28XG # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.417 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 28XG pdb_000028xg 10.2210/pdb28xg/pdb WWPDB D_1292154271 ? ? EMDB EMD-56938 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2026-10-07 ? 2 'EM metadata' 1 0 2026-10-07 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 28XG _pdbx_database_status.recvd_initial_deposition_date 2026-02-26 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible N # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'nanofibril (KVRVSQINM)' _pdbx_database_related.db_id EMD-56938 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email marcus.faendrich@uni-ulm.de _pdbx_contact_author.name_first Marcus _pdbx_contact_author.name_last Faendrich _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-2123-6816 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Stoyanov, N.' 1 0009-0009-8083-0269 'Schmidt, M.' 2 0000-0002-9442-460X 'Faendrich, M.' 3 0000-0003-2123-6816 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Nature _citation.journal_id_ASTM NATUAS _citation.journal_id_CSD 0006 _citation.journal_id_ISSN 1476-4687 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 657 _citation.language ? _citation.page_first 935 _citation.page_last 943 _citation.title 'Sequence-encoded hexagonal lattices in multichannel peptide nanofibrils.' _citation.year 2026 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41586-026-11016-2 _citation.pdbx_database_id_PubMed 42778700 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Gacanin, J.' 1 ? primary 'Mazzotta, F.' 2 0000-0002-8895-1454 primary 'Baptista, L.A.' 3 0000-0002-1419-6070 primary 'Stoyanov, N.' 4 0009-0009-8083-0269 primary 'Schmidt, M.' 5 0000-0002-9442-460X primary 'Alleva, N.' 6 ? primary 'Thummaraj, T.' 7 ? primary 'Bonnicel, F.' 8 ? primary 'Zhou, C.' 9 ? primary 'Gao, L.' 10 ? primary 'Munch, J.' 11 0000-0001-7316-7141 primary 'Bonn, M.' 12 0000-0001-6851-8453 primary 'Fandrich, M.' 13 ? primary 'Lieberwirth, I.' 14 0000-0003-1323-524X primary 'Cortes-Huerto, R.' 15 ? primary 'Landfester, K.' 16 0000-0001-9591-4638 primary 'Weil, T.' 17 0000-0002-5906-7205 # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'nanofibril peptide (KVRVSQINM)' _entity.formula_weight 1076.313 _entity.pdbx_number_of_molecules 30 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details '3 layers of the asymmetrical unit of the C6 symmetrical nanofibril (KVRVSQINM)' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code KVRVSQINM _entity_poly.pdbx_seq_one_letter_code_can KVRVSQINM _entity_poly.pdbx_strand_id G2,E2,F2,G1,E1,F1,G,E,F,I2,K2,I1,K1,I,K,D2,B2,C2,H2,A2,D1,B1,C1,H1,A1,D,B,C,H,A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LYS n 1 2 VAL n 1 3 ARG n 1 4 VAL n 1 5 SER n 1 6 GLN n 1 7 ILE n 1 8 ASN n 1 9 MET n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 9 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LYS 1 19 19 LYS LYS G2 . n A 1 2 VAL 2 20 20 VAL VAL G2 . n A 1 3 ARG 3 21 21 ARG ARG G2 . n A 1 4 VAL 4 22 22 VAL VAL G2 . n A 1 5 SER 5 23 23 SER SER G2 . n A 1 6 GLN 6 24 24 GLN GLN G2 . n A 1 7 ILE 7 25 25 ILE ILE G2 . n A 1 8 ASN 8 26 26 ASN ASN G2 . n A 1 9 MET 9 27 27 MET MET G2 . n B 1 1 LYS 1 55 55 LYS LYS E2 . n B 1 2 VAL 2 56 56 VAL VAL E2 . n B 1 3 ARG 3 57 57 ARG ARG E2 . n B 1 4 VAL 4 58 58 VAL VAL E2 . n B 1 5 SER 5 59 59 SER SER E2 . n B 1 6 GLN 6 60 60 GLN GLN E2 . n B 1 7 ILE 7 61 61 ILE ILE E2 . n B 1 8 ASN 8 62 62 ASN ASN E2 . n B 1 9 MET 9 63 63 MET MET E2 . n C 1 1 LYS 1 46 46 LYS LYS F2 . n C 1 2 VAL 2 47 47 VAL VAL F2 . n C 1 3 ARG 3 48 48 ARG ARG F2 . n C 1 4 VAL 4 49 49 VAL VAL F2 . n C 1 5 SER 5 50 50 SER SER F2 . n C 1 6 GLN 6 51 51 GLN GLN F2 . n C 1 7 ILE 7 52 52 ILE ILE F2 . n C 1 8 ASN 8 53 53 ASN ASN F2 . n C 1 9 MET 9 54 54 MET MET F2 . n D 1 1 LYS 1 19 19 LYS LYS G1 . n D 1 2 VAL 2 20 20 VAL VAL G1 . n D 1 3 ARG 3 21 21 ARG ARG G1 . n D 1 4 VAL 4 22 22 VAL VAL G1 . n D 1 5 SER 5 23 23 SER SER G1 . n D 1 6 GLN 6 24 24 GLN GLN G1 . n D 1 7 ILE 7 25 25 ILE ILE G1 . n D 1 8 ASN 8 26 26 ASN ASN G1 . n D 1 9 MET 9 27 27 MET MET G1 . n E 1 1 LYS 1 55 55 LYS LYS E1 . n E 1 2 VAL 2 56 56 VAL VAL E1 . n E 1 3 ARG 3 57 57 ARG ARG E1 . n E 1 4 VAL 4 58 58 VAL VAL E1 . n E 1 5 SER 5 59 59 SER SER E1 . n E 1 6 GLN 6 60 60 GLN GLN E1 . n E 1 7 ILE 7 61 61 ILE ILE E1 . n E 1 8 ASN 8 62 62 ASN ASN E1 . n E 1 9 MET 9 63 63 MET MET E1 . n F 1 1 LYS 1 46 46 LYS LYS F1 . n F 1 2 VAL 2 47 47 VAL VAL F1 . n F 1 3 ARG 3 48 48 ARG ARG F1 . n F 1 4 VAL 4 49 49 VAL VAL F1 . n F 1 5 SER 5 50 50 SER SER F1 . n F 1 6 GLN 6 51 51 GLN GLN F1 . n F 1 7 ILE 7 52 52 ILE ILE F1 . n F 1 8 ASN 8 53 53 ASN ASN F1 . n F 1 9 MET 9 54 54 MET MET F1 . n G 1 1 LYS 1 19 19 LYS LYS G . n G 1 2 VAL 2 20 20 VAL VAL G . n G 1 3 ARG 3 21 21 ARG ARG G . n G 1 4 VAL 4 22 22 VAL VAL G . n G 1 5 SER 5 23 23 SER SER G . n G 1 6 GLN 6 24 24 GLN GLN G . n G 1 7 ILE 7 25 25 ILE ILE G . n G 1 8 ASN 8 26 26 ASN ASN G . n G 1 9 MET 9 27 27 MET MET G . n H 1 1 LYS 1 55 55 LYS LYS E . n H 1 2 VAL 2 56 56 VAL VAL E . n H 1 3 ARG 3 57 57 ARG ARG E . n H 1 4 VAL 4 58 58 VAL VAL E . n H 1 5 SER 5 59 59 SER SER E . n H 1 6 GLN 6 60 60 GLN GLN E . n H 1 7 ILE 7 61 61 ILE ILE E . n H 1 8 ASN 8 62 62 ASN ASN E . n H 1 9 MET 9 63 63 MET MET E . n I 1 1 LYS 1 46 46 LYS LYS F . n I 1 2 VAL 2 47 47 VAL VAL F . n I 1 3 ARG 3 48 48 ARG ARG F . n I 1 4 VAL 4 49 49 VAL VAL F . n I 1 5 SER 5 50 50 SER SER F . n I 1 6 GLN 6 51 51 GLN GLN F . n I 1 7 ILE 7 52 52 ILE ILE F . n I 1 8 ASN 8 53 53 ASN ASN F . n I 1 9 MET 9 54 54 MET MET F . n J 1 1 LYS 1 55 55 LYS LYS I2 . n J 1 2 VAL 2 56 56 VAL VAL I2 . n J 1 3 ARG 3 57 57 ARG ARG I2 . n J 1 4 VAL 4 58 58 VAL VAL I2 . n J 1 5 SER 5 59 59 SER SER I2 . n J 1 6 GLN 6 60 60 GLN GLN I2 . n J 1 7 ILE 7 61 61 ILE ILE I2 . n J 1 8 ASN 8 62 62 ASN ASN I2 . n J 1 9 MET 9 63 63 MET MET I2 . n K 1 1 LYS 1 64 64 LYS LYS K2 . n K 1 2 VAL 2 65 65 VAL VAL K2 . n K 1 3 ARG 3 66 66 ARG ARG K2 . n K 1 4 VAL 4 67 67 VAL VAL K2 . n K 1 5 SER 5 68 68 SER SER K2 . n K 1 6 GLN 6 69 69 GLN GLN K2 . n K 1 7 ILE 7 70 70 ILE ILE K2 . n K 1 8 ASN 8 71 71 ASN ASN K2 . n K 1 9 MET 9 72 72 MET MET K2 . n L 1 1 LYS 1 55 55 LYS LYS I1 . n L 1 2 VAL 2 56 56 VAL VAL I1 . n L 1 3 ARG 3 57 57 ARG ARG I1 . n L 1 4 VAL 4 58 58 VAL VAL I1 . n L 1 5 SER 5 59 59 SER SER I1 . n L 1 6 GLN 6 60 60 GLN GLN I1 . n L 1 7 ILE 7 61 61 ILE ILE I1 . n L 1 8 ASN 8 62 62 ASN ASN I1 . n L 1 9 MET 9 63 63 MET MET I1 . n M 1 1 LYS 1 64 64 LYS LYS K1 . n M 1 2 VAL 2 65 65 VAL VAL K1 . n M 1 3 ARG 3 66 66 ARG ARG K1 . n M 1 4 VAL 4 67 67 VAL VAL K1 . n M 1 5 SER 5 68 68 SER SER K1 . n M 1 6 GLN 6 69 69 GLN GLN K1 . n M 1 7 ILE 7 70 70 ILE ILE K1 . n M 1 8 ASN 8 71 71 ASN ASN K1 . n M 1 9 MET 9 72 72 MET MET K1 . n N 1 1 LYS 1 55 55 LYS LYS I . n N 1 2 VAL 2 56 56 VAL VAL I . n N 1 3 ARG 3 57 57 ARG ARG I . n N 1 4 VAL 4 58 58 VAL VAL I . n N 1 5 SER 5 59 59 SER SER I . n N 1 6 GLN 6 60 60 GLN GLN I . n N 1 7 ILE 7 61 61 ILE ILE I . n N 1 8 ASN 8 62 62 ASN ASN I . n N 1 9 MET 9 63 63 MET MET I . n O 1 1 LYS 1 64 64 LYS LYS K . n O 1 2 VAL 2 65 65 VAL VAL K . n O 1 3 ARG 3 66 66 ARG ARG K . n O 1 4 VAL 4 67 67 VAL VAL K . n O 1 5 SER 5 68 68 SER SER K . n O 1 6 GLN 6 69 69 GLN GLN K . n O 1 7 ILE 7 70 70 ILE ILE K . n O 1 8 ASN 8 71 71 ASN ASN K . n O 1 9 MET 9 72 72 MET MET K . n P 1 1 LYS 1 37 37 LYS LYS D2 . n P 1 2 VAL 2 38 38 VAL VAL D2 . n P 1 3 ARG 3 39 39 ARG ARG D2 . n P 1 4 VAL 4 40 40 VAL VAL D2 . n P 1 5 SER 5 41 41 SER SER D2 . n P 1 6 GLN 6 42 42 GLN GLN D2 . n P 1 7 ILE 7 43 43 ILE ILE D2 . n P 1 8 ASN 8 44 44 ASN ASN D2 . n P 1 9 MET 9 45 45 MET MET D2 . n Q 1 1 LYS 1 37 37 LYS LYS B2 . n Q 1 2 VAL 2 38 38 VAL VAL B2 . n Q 1 3 ARG 3 39 39 ARG ARG B2 . n Q 1 4 VAL 4 40 40 VAL VAL B2 . n Q 1 5 SER 5 41 41 SER SER B2 . n Q 1 6 GLN 6 42 42 GLN GLN B2 . n Q 1 7 ILE 7 43 43 ILE ILE B2 . n Q 1 8 ASN 8 44 44 ASN ASN B2 . n Q 1 9 MET 9 45 45 MET MET B2 . n R 1 1 LYS 1 37 37 LYS LYS C2 . n R 1 2 VAL 2 38 38 VAL VAL C2 . n R 1 3 ARG 3 39 39 ARG ARG C2 . n R 1 4 VAL 4 40 40 VAL VAL C2 . n R 1 5 SER 5 41 41 SER SER C2 . n R 1 6 GLN 6 42 42 GLN GLN C2 . n R 1 7 ILE 7 43 43 ILE ILE C2 . n R 1 8 ASN 8 44 44 ASN ASN C2 . n R 1 9 MET 9 45 45 MET MET C2 . n S 1 1 LYS 1 37 37 LYS LYS H2 . n S 1 2 VAL 2 38 38 VAL VAL H2 . n S 1 3 ARG 3 39 39 ARG ARG H2 . n S 1 4 VAL 4 40 40 VAL VAL H2 . n S 1 5 SER 5 41 41 SER SER H2 . n S 1 6 GLN 6 42 42 GLN GLN H2 . n S 1 7 ILE 7 43 43 ILE ILE H2 . n S 1 8 ASN 8 44 44 ASN ASN H2 . n S 1 9 MET 9 45 45 MET MET H2 . n T 1 1 LYS 1 46 46 LYS LYS A2 . n T 1 2 VAL 2 47 47 VAL VAL A2 . n T 1 3 ARG 3 48 48 ARG ARG A2 . n T 1 4 VAL 4 49 49 VAL VAL A2 . n T 1 5 SER 5 50 50 SER SER A2 . n T 1 6 GLN 6 51 51 GLN GLN A2 . n T 1 7 ILE 7 52 52 ILE ILE A2 . n T 1 8 ASN 8 53 53 ASN ASN A2 . n T 1 9 MET 9 54 54 MET MET A2 . n U 1 1 LYS 1 37 37 LYS LYS D1 . n U 1 2 VAL 2 38 38 VAL VAL D1 . n U 1 3 ARG 3 39 39 ARG ARG D1 . n U 1 4 VAL 4 40 40 VAL VAL D1 . n U 1 5 SER 5 41 41 SER SER D1 . n U 1 6 GLN 6 42 42 GLN GLN D1 . n U 1 7 ILE 7 43 43 ILE ILE D1 . n U 1 8 ASN 8 44 44 ASN ASN D1 . n U 1 9 MET 9 45 45 MET MET D1 . n V 1 1 LYS 1 37 37 LYS LYS B1 . n V 1 2 VAL 2 38 38 VAL VAL B1 . n V 1 3 ARG 3 39 39 ARG ARG B1 . n V 1 4 VAL 4 40 40 VAL VAL B1 . n V 1 5 SER 5 41 41 SER SER B1 . n V 1 6 GLN 6 42 42 GLN GLN B1 . n V 1 7 ILE 7 43 43 ILE ILE B1 . n V 1 8 ASN 8 44 44 ASN ASN B1 . n V 1 9 MET 9 45 45 MET MET B1 . n W 1 1 LYS 1 37 37 LYS LYS C1 . n W 1 2 VAL 2 38 38 VAL VAL C1 . n W 1 3 ARG 3 39 39 ARG ARG C1 . n W 1 4 VAL 4 40 40 VAL VAL C1 . n W 1 5 SER 5 41 41 SER SER C1 . n W 1 6 GLN 6 42 42 GLN GLN C1 . n W 1 7 ILE 7 43 43 ILE ILE C1 . n W 1 8 ASN 8 44 44 ASN ASN C1 . n W 1 9 MET 9 45 45 MET MET C1 . n X 1 1 LYS 1 37 37 LYS LYS H1 . n X 1 2 VAL 2 38 38 VAL VAL H1 . n X 1 3 ARG 3 39 39 ARG ARG H1 . n X 1 4 VAL 4 40 40 VAL VAL H1 . n X 1 5 SER 5 41 41 SER SER H1 . n X 1 6 GLN 6 42 42 GLN GLN H1 . n X 1 7 ILE 7 43 43 ILE ILE H1 . n X 1 8 ASN 8 44 44 ASN ASN H1 . n X 1 9 MET 9 45 45 MET MET H1 . n Y 1 1 LYS 1 46 46 LYS LYS A1 . n Y 1 2 VAL 2 47 47 VAL VAL A1 . n Y 1 3 ARG 3 48 48 ARG ARG A1 . n Y 1 4 VAL 4 49 49 VAL VAL A1 . n Y 1 5 SER 5 50 50 SER SER A1 . n Y 1 6 GLN 6 51 51 GLN GLN A1 . n Y 1 7 ILE 7 52 52 ILE ILE A1 . n Y 1 8 ASN 8 53 53 ASN ASN A1 . n Y 1 9 MET 9 54 54 MET MET A1 . n Z 1 1 LYS 1 37 37 LYS LYS D . n Z 1 2 VAL 2 38 38 VAL VAL D . n Z 1 3 ARG 3 39 39 ARG ARG D . n Z 1 4 VAL 4 40 40 VAL VAL D . n Z 1 5 SER 5 41 41 SER SER D . n Z 1 6 GLN 6 42 42 GLN GLN D . n Z 1 7 ILE 7 43 43 ILE ILE D . n Z 1 8 ASN 8 44 44 ASN ASN D . n Z 1 9 MET 9 45 45 MET MET D . n AA 1 1 LYS 1 37 37 LYS LYS B . n AA 1 2 VAL 2 38 38 VAL VAL B . n AA 1 3 ARG 3 39 39 ARG ARG B . n AA 1 4 VAL 4 40 40 VAL VAL B . n AA 1 5 SER 5 41 41 SER SER B . n AA 1 6 GLN 6 42 42 GLN GLN B . n AA 1 7 ILE 7 43 43 ILE ILE B . n AA 1 8 ASN 8 44 44 ASN ASN B . n AA 1 9 MET 9 45 45 MET MET B . n BA 1 1 LYS 1 37 37 LYS LYS C . n BA 1 2 VAL 2 38 38 VAL VAL C . n BA 1 3 ARG 3 39 39 ARG ARG C . n BA 1 4 VAL 4 40 40 VAL VAL C . n BA 1 5 SER 5 41 41 SER SER C . n BA 1 6 GLN 6 42 42 GLN GLN C . n BA 1 7 ILE 7 43 43 ILE ILE C . n BA 1 8 ASN 8 44 44 ASN ASN C . n BA 1 9 MET 9 45 45 MET MET C . n CA 1 1 LYS 1 37 37 LYS LYS H . n CA 1 2 VAL 2 38 38 VAL VAL H . n CA 1 3 ARG 3 39 39 ARG ARG H . n CA 1 4 VAL 4 40 40 VAL VAL H . n CA 1 5 SER 5 41 41 SER SER H . n CA 1 6 GLN 6 42 42 GLN GLN H . n CA 1 7 ILE 7 43 43 ILE ILE H . n CA 1 8 ASN 8 44 44 ASN ASN H . n CA 1 9 MET 9 45 45 MET MET H . n DA 1 1 LYS 1 46 46 LYS LYS A . n DA 1 2 VAL 2 47 47 VAL VAL A . n DA 1 3 ARG 3 48 48 ARG ARG A . n DA 1 4 VAL 4 49 49 VAL VAL A . n DA 1 5 SER 5 50 50 SER SER A . n DA 1 6 GLN 6 51 51 GLN GLN A . n DA 1 7 ILE 7 52 52 ILE ILE A . n DA 1 8 ASN 8 53 53 ASN ASN A . n DA 1 9 MET 9 54 54 MET MET A . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 28XG _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 28XG _struct.title 'DIT3 nanofibril' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 28XG _struct_keywords.text 'nanofibrils, synthetic peptide, peptide origami, STRUCTURAL PROTEIN' _struct_keywords.pdbx_keywords 'STRUCTURAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 1 ? H N N 1 ? I N N 1 ? J N N 1 ? K N N 1 ? L N N 1 ? M N N 1 ? N N N 1 ? O N N 1 ? P N N 1 ? Q N N 1 ? R N N 1 ? S N N 1 ? T N N 1 ? U N N 1 ? V N N 1 ? W N N 1 ? X N N 1 ? Y N N 1 ? Z N N 1 ? AA N N 1 ? BA N N 1 ? CA N N 1 ? DA N N 1 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 28XG _struct_ref.pdbx_db_accession 28XG _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 28XG G2 1 ? 9 ? 28XG 19 ? 27 ? 19 27 2 1 28XG E2 1 ? 9 ? 28XG 55 ? 63 ? 55 63 3 1 28XG F2 1 ? 9 ? 28XG 46 ? 54 ? 46 54 4 1 28XG G1 1 ? 9 ? 28XG 19 ? 27 ? 19 27 5 1 28XG E1 1 ? 9 ? 28XG 55 ? 63 ? 55 63 6 1 28XG F1 1 ? 9 ? 28XG 46 ? 54 ? 46 54 7 1 28XG G 1 ? 9 ? 28XG 19 ? 27 ? 19 27 8 1 28XG E 1 ? 9 ? 28XG 55 ? 63 ? 55 63 9 1 28XG F 1 ? 9 ? 28XG 46 ? 54 ? 46 54 10 1 28XG I2 1 ? 9 ? 28XG 55 ? 63 ? 55 63 11 1 28XG K2 1 ? 9 ? 28XG 64 ? 72 ? 64 72 12 1 28XG I1 1 ? 9 ? 28XG 55 ? 63 ? 55 63 13 1 28XG K1 1 ? 9 ? 28XG 64 ? 72 ? 64 72 14 1 28XG I 1 ? 9 ? 28XG 55 ? 63 ? 55 63 15 1 28XG K 1 ? 9 ? 28XG 64 ? 72 ? 64 72 16 1 28XG D2 1 ? 9 ? 28XG 37 ? 45 ? 37 45 17 1 28XG B2 1 ? 9 ? 28XG 37 ? 45 ? 37 45 18 1 28XG C2 1 ? 9 ? 28XG 37 ? 45 ? 37 45 19 1 28XG H2 1 ? 9 ? 28XG 37 ? 45 ? 37 45 20 1 28XG A2 1 ? 9 ? 28XG 46 ? 54 ? 46 54 21 1 28XG D1 1 ? 9 ? 28XG 37 ? 45 ? 37 45 22 1 28XG B1 1 ? 9 ? 28XG 37 ? 45 ? 37 45 23 1 28XG C1 1 ? 9 ? 28XG 37 ? 45 ? 37 45 24 1 28XG H1 1 ? 9 ? 28XG 37 ? 45 ? 37 45 25 1 28XG A1 1 ? 9 ? 28XG 46 ? 54 ? 46 54 26 1 28XG D 1 ? 9 ? 28XG 37 ? 45 ? 37 45 27 1 28XG B 1 ? 9 ? 28XG 37 ? 45 ? 37 45 28 1 28XG C 1 ? 9 ? 28XG 37 ? 45 ? 37 45 29 1 28XG H 1 ? 9 ? 28XG 37 ? 45 ? 37 45 30 1 28XG A 1 ? 9 ? 28XG 46 ? 54 ? 46 54 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 30-meric _pdbx_struct_assembly.oligomeric_count 30 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0 _pdbx_struct_oper_list.matrix[1][2] 0.0 _pdbx_struct_oper_list.matrix[1][3] 0.0 _pdbx_struct_oper_list.vector[1] 0.0 _pdbx_struct_oper_list.matrix[2][1] 0.0 _pdbx_struct_oper_list.matrix[2][2] 1.0 _pdbx_struct_oper_list.matrix[2][3] 0.0 _pdbx_struct_oper_list.vector[2] 0.0 _pdbx_struct_oper_list.matrix[3][1] 0.0 _pdbx_struct_oper_list.matrix[3][2] 0.0 _pdbx_struct_oper_list.matrix[3][3] 1.0 _pdbx_struct_oper_list.vector[3] 0.0 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 3 ? AA3 ? 3 ? AA4 ? 3 ? AA5 ? 3 ? AA6 ? 3 ? AA7 ? 3 ? AA8 ? 3 ? AA9 ? 3 ? AB1 ? 3 ? AB2 ? 3 ? AB3 ? 3 ? AB4 ? 3 ? AB5 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA2 1 2 ? parallel AA2 2 3 ? parallel AA3 1 2 ? parallel AA3 2 3 ? parallel AA4 1 2 ? parallel AA4 2 3 ? parallel AA5 1 2 ? parallel AA5 2 3 ? parallel AA6 1 2 ? parallel AA6 2 3 ? parallel AA7 1 2 ? parallel AA7 2 3 ? parallel AA8 1 2 ? parallel AA8 2 3 ? parallel AA9 1 2 ? parallel AA9 2 3 ? parallel AB1 1 2 ? parallel AB1 2 3 ? parallel AB2 1 2 ? parallel AB2 2 3 ? parallel AB3 1 2 ? parallel AB3 2 3 ? parallel AB4 1 2 ? parallel AB4 2 3 ? parallel AB5 1 2 ? parallel AB5 2 3 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL A 2 ? ASN A 8 ? VAL G2 20 ASN G2 26 AA1 2 VAL D 2 ? ASN D 8 ? VAL G1 20 ASN G1 26 AA1 3 VAL G 2 ? ASN G 8 ? VAL G 20 ASN G 26 AA2 1 VAL B 2 ? ASN B 8 ? VAL E2 56 ASN E2 62 AA2 2 VAL E 2 ? ASN E 8 ? VAL E1 56 ASN E1 62 AA2 3 VAL H 2 ? ASN H 8 ? VAL E 56 ASN E 62 AA3 1 VAL C 2 ? ASN C 8 ? VAL F2 47 ASN F2 53 AA3 2 VAL F 2 ? ASN F 8 ? VAL F1 47 ASN F1 53 AA3 3 VAL I 2 ? ASN I 8 ? VAL F 47 ASN F 53 AA4 1 VAL J 2 ? ASN J 8 ? VAL I2 56 ASN I2 62 AA4 2 VAL L 2 ? ASN L 8 ? VAL I1 56 ASN I1 62 AA4 3 VAL N 2 ? ASN N 8 ? VAL I 56 ASN I 62 AA5 1 VAL K 2 ? ASN K 8 ? VAL K2 65 ASN K2 71 AA5 2 VAL M 2 ? ASN M 8 ? VAL K1 65 ASN K1 71 AA5 3 VAL O 2 ? ASN O 8 ? VAL K 65 ASN K 71 AA6 1 VAL P 2 ? ARG P 3 ? VAL D2 38 ARG D2 39 AA6 2 VAL U 2 ? ARG U 3 ? VAL D1 38 ARG D1 39 AA6 3 VAL Z 2 ? ARG Z 3 ? VAL D 38 ARG D 39 AA7 1 ILE P 7 ? ASN P 8 ? ILE D2 43 ASN D2 44 AA7 2 ILE U 7 ? ASN U 8 ? ILE D1 43 ASN D1 44 AA7 3 ILE Z 7 ? ASN Z 8 ? ILE D 43 ASN D 44 AA8 1 VAL Q 2 ? ARG Q 3 ? VAL B2 38 ARG B2 39 AA8 2 VAL V 2 ? ARG V 3 ? VAL B1 38 ARG B1 39 AA8 3 VAL AA 2 ? ARG AA 3 ? VAL B 38 ARG B 39 AA9 1 ILE Q 7 ? ASN Q 8 ? ILE B2 43 ASN B2 44 AA9 2 ILE V 7 ? ASN V 8 ? ILE B1 43 ASN B1 44 AA9 3 ILE AA 7 ? ASN AA 8 ? ILE B 43 ASN B 44 AB1 1 VAL R 2 ? ARG R 3 ? VAL C2 38 ARG C2 39 AB1 2 VAL W 2 ? ARG W 3 ? VAL C1 38 ARG C1 39 AB1 3 VAL BA 2 ? ARG BA 3 ? VAL C 38 ARG C 39 AB2 1 ILE R 7 ? ASN R 8 ? ILE C2 43 ASN C2 44 AB2 2 ILE W 7 ? ASN W 8 ? ILE C1 43 ASN C1 44 AB2 3 ILE BA 7 ? ASN BA 8 ? ILE C 43 ASN C 44 AB3 1 VAL S 2 ? ARG S 3 ? VAL H2 38 ARG H2 39 AB3 2 VAL X 2 ? ARG X 3 ? VAL H1 38 ARG H1 39 AB3 3 VAL CA 2 ? ARG CA 3 ? VAL H 38 ARG H 39 AB4 1 ILE S 7 ? ASN S 8 ? ILE H2 43 ASN H2 44 AB4 2 ILE X 7 ? ASN X 8 ? ILE H1 43 ASN H1 44 AB4 3 ILE CA 7 ? ASN CA 8 ? ILE H 43 ASN H 44 AB5 1 VAL T 2 ? ASN T 8 ? VAL A2 47 ASN A2 53 AB5 2 VAL Y 2 ? ASN Y 8 ? VAL A1 47 ASN A1 53 AB5 3 VAL DA 2 ? ASN DA 8 ? VAL A 47 ASN A 53 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ILE A 7 ? N ILE G2 25 O ASN D 8 ? O ASN G1 26 AA1 2 3 N ILE D 7 ? N ILE G1 25 O ASN G 8 ? O ASN G 26 AA2 1 2 N ILE B 7 ? N ILE E2 61 O ASN E 8 ? O ASN E1 62 AA2 2 3 N ILE E 7 ? N ILE E1 61 O ASN H 8 ? O ASN E 62 AA3 1 2 N ARG C 3 ? N ARG F2 48 O VAL F 2 ? O VAL F1 47 AA3 2 3 N ARG F 3 ? N ARG F1 48 O VAL I 2 ? O VAL F 47 AA4 1 2 N ILE J 7 ? N ILE I2 61 O ASN L 8 ? O ASN I1 62 AA4 2 3 N ILE L 7 ? N ILE I1 61 O ASN N 8 ? O ASN I 62 AA5 1 2 N ILE K 7 ? N ILE K2 70 O ASN M 8 ? O ASN K1 71 AA5 2 3 N ILE M 7 ? N ILE K1 70 O ASN O 8 ? O ASN K 71 AA6 1 2 N ARG P 3 ? N ARG D2 39 O VAL U 2 ? O VAL D1 38 AA6 2 3 N ARG U 3 ? N ARG D1 39 O VAL Z 2 ? O VAL D 38 AA7 1 2 N ILE P 7 ? N ILE D2 43 O ASN U 8 ? O ASN D1 44 AA7 2 3 N ILE U 7 ? N ILE D1 43 O ASN Z 8 ? O ASN D 44 AA8 1 2 N ARG Q 3 ? N ARG B2 39 O VAL V 2 ? O VAL B1 38 AA8 2 3 N ARG V 3 ? N ARG B1 39 O VAL AA 2 ? O VAL B 38 AA9 1 2 N ILE Q 7 ? N ILE B2 43 O ASN V 8 ? O ASN B1 44 AA9 2 3 N ILE V 7 ? N ILE B1 43 O ASN AA 8 ? O ASN B 44 AB1 1 2 N ARG R 3 ? N ARG C2 39 O VAL W 2 ? O VAL C1 38 AB1 2 3 N ARG W 3 ? N ARG C1 39 O VAL BA 2 ? O VAL C 38 AB2 1 2 N ILE R 7 ? N ILE C2 43 O ASN W 8 ? O ASN C1 44 AB2 2 3 N ILE W 7 ? N ILE C1 43 O ASN BA 8 ? O ASN C 44 AB3 1 2 N ARG S 3 ? N ARG H2 39 O VAL X 2 ? O VAL H1 38 AB3 2 3 N ARG X 3 ? N ARG H1 39 O VAL CA 2 ? O VAL H 38 AB4 1 2 N ILE S 7 ? N ILE H2 43 O ASN X 8 ? O ASN H1 44 AB4 2 3 N ILE X 7 ? N ILE H1 43 O ASN CA 8 ? O ASN H 44 AB5 1 2 N ILE T 7 ? N ILE A2 52 O ASN Y 8 ? O ASN A1 53 AB5 2 3 N ILE Y 7 ? N ILE A1 52 O ASN DA 8 ? O ASN A 53 # _pdbx_entry_details.entry_id 28XG _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification N # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 28XG _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 28XG _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details 'FSC estimation in RELION' _em_3d_reconstruction.resolution 1.78 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 171312 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type HELICAL # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details 'phosphate-buffered saline (PBS) and DMSO' _em_buffer.pH 7.4 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'nanofibril (KVRVSQINM)' _em_entity_assembly.details 'nanofibril with sequence KVRVSQINM' _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 28XG _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_min 500 _em_imaging.nominal_defocus_max 2000 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter 100 _em_imaging.specimen_id 1 _em_imaging.cryogen ? _em_imaging.objective_aperture ? _em_imaging.microscope_serial_number ? _em_imaging.microscope_version ? # _em_sample_support.id 1 _em_sample_support.film_material ? _em_sample_support.method ? _em_sample_support.grid_material ? _em_sample_support.grid_mesh_size ? _em_sample_support.grid_type C-flat-1.2/1.3 _em_sample_support.details ? _em_sample_support.specimen_id 1 _em_sample_support.citation_id ? # _em_vitrification.entry_id 28XG _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 28XG _em_experiment.id 1 _em_experiment.reconstruction_method HELICAL _em_experiment.aggregation_state 'HELICAL ARRAY' _em_experiment.entity_assembly_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ARG N N N N 1 ARG CA C N S 2 ARG C C N N 3 ARG O O N N 4 ARG CB C N N 5 ARG CG C N N 6 ARG CD C N N 7 ARG NE N N N 8 ARG CZ C N N 9 ARG NH1 N N N 10 ARG NH2 N N N 11 ARG OXT O N N 12 ARG H H N N 13 ARG H2 H N N 14 ARG HA H N N 15 ARG HB2 H N N 16 ARG HB3 H N N 17 ARG HG2 H N N 18 ARG HG3 H N N 19 ARG HD2 H N N 20 ARG HD3 H N N 21 ARG HE H N N 22 ARG HH11 H N N 23 ARG HH12 H N N 24 ARG HH21 H N N 25 ARG HH22 H N N 26 ARG HXT H N N 27 ASN N N N N 28 ASN CA C N S 29 ASN C C N N 30 ASN O O N N 31 ASN CB C N N 32 ASN CG C N N 33 ASN OD1 O N N 34 ASN ND2 N N N 35 ASN OXT O N N 36 ASN H H N N 37 ASN H2 H N N 38 ASN HA H N N 39 ASN HB2 H N N 40 ASN HB3 H N N 41 ASN HD21 H N N 42 ASN HD22 H N N 43 ASN HXT H N N 44 GLN N N N N 45 GLN CA C N S 46 GLN C C N N 47 GLN O O N N 48 GLN CB C N N 49 GLN CG C N N 50 GLN CD C N N 51 GLN OE1 O N N 52 GLN NE2 N N N 53 GLN OXT O N N 54 GLN H H N N 55 GLN H2 H N N 56 GLN HA H N N 57 GLN HB2 H N N 58 GLN HB3 H N N 59 GLN HG2 H N N 60 GLN HG3 H N N 61 GLN HE21 H N N 62 GLN HE22 H N N 63 GLN HXT H N N 64 ILE N N N N 65 ILE CA C N S 66 ILE C C N N 67 ILE O O N N 68 ILE CB C N S 69 ILE CG1 C N N 70 ILE CG2 C N N 71 ILE CD1 C N N 72 ILE OXT O N N 73 ILE H H N N 74 ILE H2 H N N 75 ILE HA H N N 76 ILE HB H N N 77 ILE HG12 H N N 78 ILE HG13 H N N 79 ILE HG21 H N N 80 ILE HG22 H N N 81 ILE HG23 H N N 82 ILE HD11 H N N 83 ILE HD12 H N N 84 ILE HD13 H N N 85 ILE HXT H N N 86 LYS N N N N 87 LYS CA C N S 88 LYS C C N N 89 LYS O O N N 90 LYS CB C N N 91 LYS CG C N N 92 LYS CD C N N 93 LYS CE C N N 94 LYS NZ N N N 95 LYS OXT O N N 96 LYS H H N N 97 LYS H2 H N N 98 LYS HA H N N 99 LYS HB2 H N N 100 LYS HB3 H N N 101 LYS HG2 H N N 102 LYS HG3 H N N 103 LYS HD2 H N N 104 LYS HD3 H N N 105 LYS HE2 H N N 106 LYS HE3 H N N 107 LYS HZ1 H N N 108 LYS HZ2 H N N 109 LYS HZ3 H N N 110 LYS HXT H N N 111 MET N N N N 112 MET CA C N S 113 MET C C N N 114 MET O O N N 115 MET CB C N N 116 MET CG C N N 117 MET SD S N N 118 MET CE C N N 119 MET OXT O N N 120 MET H H N N 121 MET H2 H N N 122 MET HA H N N 123 MET HB2 H N N 124 MET HB3 H N N 125 MET HG2 H N N 126 MET HG3 H N N 127 MET HE1 H N N 128 MET HE2 H N N 129 MET HE3 H N N 130 MET HXT H N N 131 SER N N N N 132 SER CA C N S 133 SER C C N N 134 SER O O N N 135 SER CB C N N 136 SER OG O N N 137 SER OXT O N N 138 SER H H N N 139 SER H2 H N N 140 SER HA H N N 141 SER HB2 H N N 142 SER HB3 H N N 143 SER HG H N N 144 SER HXT H N N 145 VAL N N N N 146 VAL CA C N S 147 VAL C C N N 148 VAL O O N N 149 VAL CB C N N 150 VAL CG1 C N N 151 VAL CG2 C N N 152 VAL OXT O N N 153 VAL H H N N 154 VAL H2 H N N 155 VAL HA H N N 156 VAL HB H N N 157 VAL HG11 H N N 158 VAL HG12 H N N 159 VAL HG13 H N N 160 VAL HG21 H N N 161 VAL HG22 H N N 162 VAL HG23 H N N 163 VAL HXT H N N 164 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ARG N CA sing N N 1 ARG N H sing N N 2 ARG N H2 sing N N 3 ARG CA C sing N N 4 ARG CA CB sing N N 5 ARG CA HA sing N N 6 ARG C O doub N N 7 ARG C OXT sing N N 8 ARG CB CG sing N N 9 ARG CB HB2 sing N N 10 ARG CB HB3 sing N N 11 ARG CG CD sing N N 12 ARG CG HG2 sing N N 13 ARG CG HG3 sing N N 14 ARG CD NE sing N N 15 ARG CD HD2 sing N N 16 ARG CD HD3 sing N N 17 ARG NE CZ sing N N 18 ARG NE HE sing N N 19 ARG CZ NH1 sing N N 20 ARG CZ NH2 doub N N 21 ARG NH1 HH11 sing N N 22 ARG NH1 HH12 sing N N 23 ARG NH2 HH21 sing N N 24 ARG NH2 HH22 sing N N 25 ARG OXT HXT sing N N 26 ASN N CA sing N N 27 ASN N H sing N N 28 ASN N H2 sing N N 29 ASN CA C sing N N 30 ASN CA CB sing N N 31 ASN CA HA sing N N 32 ASN C O doub N N 33 ASN C OXT sing N N 34 ASN CB CG sing N N 35 ASN CB HB2 sing N N 36 ASN CB HB3 sing N N 37 ASN CG OD1 doub N N 38 ASN CG ND2 sing N N 39 ASN ND2 HD21 sing N N 40 ASN ND2 HD22 sing N N 41 ASN OXT HXT sing N N 42 GLN N CA sing N N 43 GLN N H sing N N 44 GLN N H2 sing N N 45 GLN CA C sing N N 46 GLN CA CB sing N N 47 GLN CA HA sing N N 48 GLN C O doub N N 49 GLN C OXT sing N N 50 GLN CB CG sing N N 51 GLN CB HB2 sing N N 52 GLN CB HB3 sing N N 53 GLN CG CD sing N N 54 GLN CG HG2 sing N N 55 GLN CG HG3 sing N N 56 GLN CD OE1 doub N N 57 GLN CD NE2 sing N N 58 GLN NE2 HE21 sing N N 59 GLN NE2 HE22 sing N N 60 GLN OXT HXT sing N N 61 ILE N CA sing N N 62 ILE N H sing N N 63 ILE N H2 sing N N 64 ILE CA C sing N N 65 ILE CA CB sing N N 66 ILE CA HA sing N N 67 ILE C O doub N N 68 ILE C OXT sing N N 69 ILE CB CG1 sing N N 70 ILE CB CG2 sing N N 71 ILE CB HB sing N N 72 ILE CG1 CD1 sing N N 73 ILE CG1 HG12 sing N N 74 ILE CG1 HG13 sing N N 75 ILE CG2 HG21 sing N N 76 ILE CG2 HG22 sing N N 77 ILE CG2 HG23 sing N N 78 ILE CD1 HD11 sing N N 79 ILE CD1 HD12 sing N N 80 ILE CD1 HD13 sing N N 81 ILE OXT HXT sing N N 82 LYS N CA sing N N 83 LYS N H sing N N 84 LYS N H2 sing N N 85 LYS CA C sing N N 86 LYS CA CB sing N N 87 LYS CA HA sing N N 88 LYS C O doub N N 89 LYS C OXT sing N N 90 LYS CB CG sing N N 91 LYS CB HB2 sing N N 92 LYS CB HB3 sing N N 93 LYS CG CD sing N N 94 LYS CG HG2 sing N N 95 LYS CG HG3 sing N N 96 LYS CD CE sing N N 97 LYS CD HD2 sing N N 98 LYS CD HD3 sing N N 99 LYS CE NZ sing N N 100 LYS CE HE2 sing N N 101 LYS CE HE3 sing N N 102 LYS NZ HZ1 sing N N 103 LYS NZ HZ2 sing N N 104 LYS NZ HZ3 sing N N 105 LYS OXT HXT sing N N 106 MET N CA sing N N 107 MET N H sing N N 108 MET N H2 sing N N 109 MET CA C sing N N 110 MET CA CB sing N N 111 MET CA HA sing N N 112 MET C O doub N N 113 MET C OXT sing N N 114 MET CB CG sing N N 115 MET CB HB2 sing N N 116 MET CB HB3 sing N N 117 MET CG SD sing N N 118 MET CG HG2 sing N N 119 MET CG HG3 sing N N 120 MET SD CE sing N N 121 MET CE HE1 sing N N 122 MET CE HE2 sing N N 123 MET CE HE3 sing N N 124 MET OXT HXT sing N N 125 SER N CA sing N N 126 SER N H sing N N 127 SER N H2 sing N N 128 SER CA C sing N N 129 SER CA CB sing N N 130 SER CA HA sing N N 131 SER C O doub N N 132 SER C OXT sing N N 133 SER CB OG sing N N 134 SER CB HB2 sing N N 135 SER CB HB3 sing N N 136 SER OG HG sing N N 137 SER OXT HXT sing N N 138 VAL N CA sing N N 139 VAL N H sing N N 140 VAL N H2 sing N N 141 VAL CA C sing N N 142 VAL CA CB sing N N 143 VAL CA HA sing N N 144 VAL C O doub N N 145 VAL C OXT sing N N 146 VAL CB CG1 sing N N 147 VAL CB CG2 sing N N 148 VAL CB HB sing N N 149 VAL CG1 HG11 sing N N 150 VAL CG1 HG12 sing N N 151 VAL CG1 HG13 sing N N 152 VAL CG2 HG21 sing N N 153 VAL CG2 HG22 sing N N 154 VAL CG2 HG23 sing N N 155 VAL OXT HXT sing N N 156 # _em_admin.current_status REL _em_admin.deposition_date 2026-02-26 _em_admin.deposition_site PDBE _em_admin.entry_id 28XG _em_admin.last_update 2026-10-07 _em_admin.map_release_date 2026-10-07 _em_admin.title 'DIT3 nanofibril' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units ? _em_entity_assembly_molwt.value ? # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 32630 _em_entity_assembly_naturalsource.organism 'synthetic construct' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 32630 _em_entity_assembly_recombinant.organism 'synthetic construct' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.details ? _em_helical_entity.axial_symmetry C6 _em_helical_entity.angular_rotation_per_subunit -0.6115 _em_helical_entity.axial_rise_per_subunit 4.791 # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 50 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'FEI FALCON IV (4k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images 11885 # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version _em_software.reference_DOI 'PARTICLE SELECTION' ? 1 1 ? ? cryoSPARC 4.71 ? 'IMAGE ACQUISITION' ? 2 ? ? 1 SerialEM ? ? MASKING ? 3 ? ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? ? ? ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? ? 'MODEL FITTING' ? 7 ? ? ? ? ? ? 'MODEL REFINEMENT' ? 8 ? ? ? ? ? ? OTHER ? 9 ? ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? ? RECONSTRUCTION ? 13 1 ? ? cryoSPARC 4.71 ? # _em_specimen.concentration 1 _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'German Research Foundation (DFG)' _pdbx_audit_support.country Germany _pdbx_audit_support.grant_number 'SFB 1279/Z03 and A03' _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 28XG _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O S # loop_ #