data_292D # _entry.id 292D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 292D pdb_0000292d 10.2210/pdb292d/pdb RCSB DDF027 ? ? WWPDB D_1000177705 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1996-12-02 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-14 5 'Structure model' 1 4 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_struct_conn_angle 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_site 7 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.value' 21 4 'Structure model' '_struct_conn.pdbx_dist_value' 22 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 23 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 24 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 25 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 26 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 27 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 28 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 29 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 30 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 31 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 32 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 33 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 34 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 35 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 36 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 37 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 292D _pdbx_database_status.recvd_initial_deposition_date 1991-10-09 _pdbx_database_status.deposit_site NDB _pdbx_database_status.process_site NDB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ohishi, H.' 1 'Kunisawa, S.' 2 'Van Der Marel, G.' 3 'Van Boom, J.H.' 4 'Rich, A.' 5 'Wang, A.H.-J.' 6 'Tomita, K.' 7 'Hakoshima, T.' 8 # _citation.id primary _citation.title ;Interaction between the left-handed Z-DNA and polyamine. The crystal structure of the d(CG)3 and N-(2-aminoethyl)-1,4-diamino-butane complex. ; _citation.journal_abbrev 'FEBS Lett.' _citation.journal_volume 284 _citation.page_first 238 _citation.page_last 244 _citation.year 1991 _citation.journal_id_ASTM FEBLAL _citation.country NE _citation.journal_id_ISSN 0014-5793 _citation.journal_id_CSD 0165 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 2060642 _citation.pdbx_database_id_DOI '10.1016/0014-5793(91)80694-X' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ohishi, H.' 1 ? primary 'Kunisawa, S.' 2 ? primary 'van der Marel, G.' 3 ? primary 'van Boom, J.H.' 4 ? primary 'Rich, A.' 5 ? primary 'Wang, A.H.' 6 ? primary 'Tomita, K.' 7 ? primary 'Hakoshima, T.' 8 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*GP*CP*GP*CP*G)-3') ; 1810.205 2 ? ? ? ? 2 non-polymer syn '1-(AMINOETHYL)AMINO-4-AMINOBUTANE' 131.219 1 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 3 ? ? ? ? 4 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 5 water nat water 18.015 80 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DC)(DG)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGCGCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '1-(AMINOETHYL)AMINO-4-AMINOBUTANE' P24 3 'MAGNESIUM ION' MG 4 'SODIUM ION' NA 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DC n 1 4 DG n 1 5 DC n 1 6 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 P24 non-polymer . '1-(AMINOETHYL)AMINO-4-AMINOBUTANE' 'PA(24)' 'C6 H17 N3' 131.219 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DC 5 5 5 DC C A . n A 1 6 DG 6 6 6 DG G A . n B 1 1 DC 1 7 7 DC C B . n B 1 2 DG 2 8 8 DG G B . n B 1 3 DC 3 9 9 DC C B . n B 1 4 DG 4 10 10 DG G B . n B 1 5 DC 5 11 11 DC C B . n B 1 6 DG 6 12 12 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 P24 1 13 13 P24 P24 A . D 3 MG 1 14 14 MG MO5 A . E 3 MG 1 15 15 MG MO6 A . F 3 MG 1 16 16 MG MO5 B . G 4 NA 1 17 17 NA NA5 B . H 5 HOH 1 18 18 HOH HOH A . H 5 HOH 2 20 20 HOH HOH A . H 5 HOH 3 21 21 HOH HOH A . H 5 HOH 4 22 22 HOH HOH A . H 5 HOH 5 23 23 HOH HOH A . H 5 HOH 6 24 24 HOH HOH A . H 5 HOH 7 26 26 HOH HOH A . H 5 HOH 8 28 28 HOH HOH A . H 5 HOH 9 29 29 HOH HOH A . H 5 HOH 10 30 30 HOH HOH A . H 5 HOH 11 31 31 HOH HOH A . H 5 HOH 12 33 33 HOH HOH A . H 5 HOH 13 34 34 HOH HOH A . H 5 HOH 14 36 36 HOH HOH A . H 5 HOH 15 37 37 HOH HOH A . H 5 HOH 16 40 40 HOH HOH A . H 5 HOH 17 41 41 HOH HOH A . H 5 HOH 18 43 43 HOH HOH A . H 5 HOH 19 44 44 HOH HOH A . H 5 HOH 20 47 47 HOH HOH A . H 5 HOH 21 53 53 HOH HOH A . H 5 HOH 22 54 54 HOH HOH A . H 5 HOH 23 55 55 HOH HOH A . H 5 HOH 24 59 59 HOH HOH A . H 5 HOH 25 61 61 HOH HOH A . H 5 HOH 26 62 62 HOH HOH A . H 5 HOH 27 64 64 HOH HOH A . H 5 HOH 28 65 65 HOH HOH A . H 5 HOH 29 66 66 HOH HOH A . H 5 HOH 30 67 67 HOH HOH A . H 5 HOH 31 68 68 HOH HOH A . H 5 HOH 32 71 71 HOH HOH A . H 5 HOH 33 72 72 HOH HOH A . H 5 HOH 34 73 73 HOH HOH A . H 5 HOH 35 74 74 HOH HOH A . H 5 HOH 36 75 75 HOH HOH A . H 5 HOH 37 76 76 HOH HOH A . H 5 HOH 38 78 78 HOH HOH A . H 5 HOH 39 79 14 HOH MO5 A . H 5 HOH 40 80 14 HOH MO5 A . H 5 HOH 41 81 14 HOH MO5 A . H 5 HOH 42 82 14 HOH MO5 A . H 5 HOH 43 83 14 HOH MO5 A . H 5 HOH 44 84 15 HOH MO6 A . H 5 HOH 45 85 15 HOH MO6 A . H 5 HOH 46 86 15 HOH MO6 A . H 5 HOH 47 87 15 HOH MO6 A . I 5 HOH 1 19 19 HOH HOH B . I 5 HOH 2 25 25 HOH HOH B . I 5 HOH 3 27 27 HOH HOH B . I 5 HOH 4 32 32 HOH HOH B . I 5 HOH 5 35 35 HOH HOH B . I 5 HOH 6 38 38 HOH HOH B . I 5 HOH 7 39 39 HOH HOH B . I 5 HOH 8 42 42 HOH HOH B . I 5 HOH 9 45 45 HOH HOH B . I 5 HOH 10 46 46 HOH HOH B . I 5 HOH 11 48 48 HOH HOH B . I 5 HOH 12 49 49 HOH HOH B . I 5 HOH 13 50 50 HOH HOH B . I 5 HOH 14 51 51 HOH HOH B . I 5 HOH 15 52 52 HOH HOH B . I 5 HOH 16 56 56 HOH HOH B . I 5 HOH 17 57 57 HOH HOH B . I 5 HOH 18 58 58 HOH HOH B . I 5 HOH 19 60 60 HOH HOH B . I 5 HOH 20 63 63 HOH HOH B . I 5 HOH 21 69 69 HOH HOH B . I 5 HOH 22 70 70 HOH HOH B . I 5 HOH 23 77 77 HOH HOH B . I 5 HOH 24 88 16 HOH MO5 B . I 5 HOH 25 89 16 HOH MO5 B . I 5 HOH 26 90 16 HOH MO5 B . I 5 HOH 27 91 16 HOH MO5 B . I 5 HOH 28 92 16 HOH MO5 B . I 5 HOH 29 93 17 HOH NA5 B . I 5 HOH 30 94 17 HOH NA5 B . I 5 HOH 31 95 17 HOH NA5 B . I 5 HOH 32 96 17 HOH NA5 B . I 5 HOH 33 97 17 HOH NA5 B . # _software.name NUCLSQ _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # _cell.entry_id 292D _cell.length_a 17.940 _cell.length_b 31.230 _cell.length_c 44.550 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 292D _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # _exptl.entry_id 292D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.72 _exptl_crystal.density_percent_sol 28.64 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.00 _exptl_crystal_grow.pdbx_details 'pH 7.00, VAPOR DIFFUSION' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 MGCL2 ? ? ? 1 3 1 'NA CACODYLATE' ? ? ? 1 4 1 'N-(2-AMINOETHYL)-1,4-DIAMINOBUTANE_HCL' ? ? ? # _diffrn.id 1 _diffrn.crystal_id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector DIFFRACTOMETER _diffrn_detector.type ? _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source ? _diffrn_source.type ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 292D _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low ? _reflns.d_resolution_high 1.000 _reflns.number_obs ? _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 292D _refine.ls_number_reflns_obs 8921 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 3.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high 1.000 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.1610000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ZDF001 _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 240 _refine_hist.pdbx_number_atoms_ligand 32 _refine_hist.number_atoms_solvent 61 _refine_hist.number_atoms_total 333 _refine_hist.d_res_high 1.000 _refine_hist.d_res_low . # _database_PDB_matrix.entry_id 292D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 292D _struct.title ;INTERACTION BETWEEN THE LEFT-HANDED Z-DNA AND POLYAMINE:THE CRYSTAL STRUCTURE OF THE D(CG)3 AND N-(2-AMINOETHYL)-1,4-DIAMINOBUTANE COMPLEX ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 292D _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'Z-DNA, DOUBLE HELIX, COMPLEXED WITH N-(2-AMINOETHYL)-1, 4-DIAMINOBUTANE, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 4 ? H N N 5 ? I N N 5 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 292D _struct_ref.pdbx_db_accession 292D _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 292D A 1 ? 6 ? 292D 1 ? 6 ? 1 6 2 1 292D B 1 ? 6 ? 292D 7 ? 12 ? 7 12 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 6 N7 ? ? ? 1_555 D MG . MG ? ? A DG 6 A MG 14 1_555 ? ? ? ? ? ? ? 2.343 ? ? metalc2 metalc ? ? D MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 14 A HOH 79 1_555 ? ? ? ? ? ? ? 2.163 ? ? metalc3 metalc ? ? D MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 14 A HOH 80 1_555 ? ? ? ? ? ? ? 2.109 ? ? metalc4 metalc ? ? D MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 14 A HOH 81 1_555 ? ? ? ? ? ? ? 2.157 ? ? metalc5 metalc ? ? D MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 14 A HOH 82 1_555 ? ? ? ? ? ? ? 1.837 ? ? metalc6 metalc ? ? D MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 14 A HOH 83 1_555 ? ? ? ? ? ? ? 2.145 ? ? metalc7 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 15 A HOH 82 1_555 ? ? ? ? ? ? ? 1.948 ? ? metalc8 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 15 A HOH 83 1_555 ? ? ? ? ? ? ? 2.097 ? ? metalc9 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 15 A HOH 84 1_555 ? ? ? ? ? ? ? 2.214 ? ? metalc10 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 15 A HOH 85 1_555 ? ? ? ? ? ? ? 2.292 ? ? metalc11 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 15 A HOH 86 1_555 ? ? ? ? ? ? ? 2.067 ? ? metalc12 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 15 A HOH 87 1_555 ? ? ? ? ? ? ? 2.051 ? ? metalc13 metalc ? ? B DC 3 OP2 ? ? ? 1_555 G NA . NA ? ? B DC 9 B NA 17 1_555 ? ? ? ? ? ? ? 2.881 ? ? metalc14 metalc ? ? F MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 16 B HOH 88 1_555 ? ? ? ? ? ? ? 2.046 ? ? metalc15 metalc ? ? F MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 16 B HOH 89 1_555 ? ? ? ? ? ? ? 2.116 ? ? metalc16 metalc ? ? F MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 16 B HOH 90 1_555 ? ? ? ? ? ? ? 2.098 ? ? metalc17 metalc ? ? F MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 16 B HOH 91 1_555 ? ? ? ? ? ? ? 2.044 ? ? metalc18 metalc ? ? F MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 16 B HOH 92 1_555 ? ? ? ? ? ? ? 2.146 ? ? metalc19 metalc ? ? G NA . NA ? ? ? 1_555 I HOH . O ? ? B NA 17 B HOH 93 1_555 ? ? ? ? ? ? ? 2.473 ? ? metalc20 metalc ? ? G NA . NA ? ? ? 1_555 I HOH . O ? ? B NA 17 B HOH 94 1_555 ? ? ? ? ? ? ? 2.623 ? ? metalc21 metalc ? ? G NA . NA ? ? ? 1_555 I HOH . O ? ? B NA 17 B HOH 95 1_555 ? ? ? ? ? ? ? 2.425 ? ? metalc22 metalc ? ? G NA . NA ? ? ? 1_555 I HOH . O ? ? B NA 17 B HOH 96 1_555 ? ? ? ? ? ? ? 2.528 ? ? metalc23 metalc ? ? G NA . NA ? ? ? 1_555 I HOH . O ? ? B NA 17 B HOH 97 1_555 ? ? ? ? ? ? ? 2.350 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 6 N1 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 6 O6 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 6 N2 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 5 N3 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 5 O2 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 5 N4 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 6 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 6 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 6 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N7 ? A DG 6 ? A DG 6 ? 1_555 MG ? D MG . ? A MG 14 ? 1_555 O ? H HOH . ? A HOH 79 ? 1_555 86.6 ? 2 N7 ? A DG 6 ? A DG 6 ? 1_555 MG ? D MG . ? A MG 14 ? 1_555 O ? H HOH . ? A HOH 80 ? 1_555 86.6 ? 3 O ? H HOH . ? A HOH 79 ? 1_555 MG ? D MG . ? A MG 14 ? 1_555 O ? H HOH . ? A HOH 80 ? 1_555 167.4 ? 4 N7 ? A DG 6 ? A DG 6 ? 1_555 MG ? D MG . ? A MG 14 ? 1_555 O ? H HOH . ? A HOH 81 ? 1_555 90.3 ? 5 O ? H HOH . ? A HOH 79 ? 1_555 MG ? D MG . ? A MG 14 ? 1_555 O ? H HOH . ? A HOH 81 ? 1_555 77.7 ? 6 O ? H HOH . ? A HOH 80 ? 1_555 MG ? D MG . ? A MG 14 ? 1_555 O ? H HOH . ? A HOH 81 ? 1_555 91.8 ? 7 N7 ? A DG 6 ? A DG 6 ? 1_555 MG ? D MG . ? A MG 14 ? 1_555 O ? H HOH . ? A HOH 82 ? 1_555 91.8 ? 8 O ? H HOH . ? A HOH 79 ? 1_555 MG ? D MG . ? A MG 14 ? 1_555 O ? H HOH . ? A HOH 82 ? 1_555 91.0 ? 9 O ? H HOH . ? A HOH 80 ? 1_555 MG ? D MG . ? A MG 14 ? 1_555 O ? H HOH . ? A HOH 82 ? 1_555 99.8 ? 10 O ? H HOH . ? A HOH 81 ? 1_555 MG ? D MG . ? A MG 14 ? 1_555 O ? H HOH . ? A HOH 82 ? 1_555 168.4 ? 11 N7 ? A DG 6 ? A DG 6 ? 1_555 MG ? D MG . ? A MG 14 ? 1_555 O ? H HOH . ? A HOH 83 ? 1_555 175.9 ? 12 O ? H HOH . ? A HOH 79 ? 1_555 MG ? D MG . ? A MG 14 ? 1_555 O ? H HOH . ? A HOH 83 ? 1_555 96.1 ? 13 O ? H HOH . ? A HOH 80 ? 1_555 MG ? D MG . ? A MG 14 ? 1_555 O ? H HOH . ? A HOH 83 ? 1_555 90.2 ? 14 O ? H HOH . ? A HOH 81 ? 1_555 MG ? D MG . ? A MG 14 ? 1_555 O ? H HOH . ? A HOH 83 ? 1_555 87.3 ? 15 O ? H HOH . ? A HOH 82 ? 1_555 MG ? D MG . ? A MG 14 ? 1_555 O ? H HOH . ? A HOH 83 ? 1_555 91.2 ? 16 O ? H HOH . ? A HOH 82 ? 1_555 MG ? E MG . ? A MG 15 ? 1_555 O ? H HOH . ? A HOH 83 ? 1_555 89.6 ? 17 O ? H HOH . ? A HOH 82 ? 1_555 MG ? E MG . ? A MG 15 ? 1_555 O ? H HOH . ? A HOH 84 ? 1_555 118.4 ? 18 O ? H HOH . ? A HOH 83 ? 1_555 MG ? E MG . ? A MG 15 ? 1_555 O ? H HOH . ? A HOH 84 ? 1_555 98.1 ? 19 O ? H HOH . ? A HOH 82 ? 1_555 MG ? E MG . ? A MG 15 ? 1_555 O ? H HOH . ? A HOH 85 ? 1_555 69.3 ? 20 O ? H HOH . ? A HOH 83 ? 1_555 MG ? E MG . ? A MG 15 ? 1_555 O ? H HOH . ? A HOH 85 ? 1_555 102.8 ? 21 O ? H HOH . ? A HOH 84 ? 1_555 MG ? E MG . ? A MG 15 ? 1_555 O ? H HOH . ? A HOH 85 ? 1_555 157.9 ? 22 O ? H HOH . ? A HOH 82 ? 1_555 MG ? E MG . ? A MG 15 ? 1_555 O ? H HOH . ? A HOH 86 ? 1_555 80.0 ? 23 O ? H HOH . ? A HOH 83 ? 1_555 MG ? E MG . ? A MG 15 ? 1_555 O ? H HOH . ? A HOH 86 ? 1_555 164.6 ? 24 O ? H HOH . ? A HOH 84 ? 1_555 MG ? E MG . ? A MG 15 ? 1_555 O ? H HOH . ? A HOH 86 ? 1_555 77.4 ? 25 O ? H HOH . ? A HOH 85 ? 1_555 MG ? E MG . ? A MG 15 ? 1_555 O ? H HOH . ? A HOH 86 ? 1_555 84.2 ? 26 O ? H HOH . ? A HOH 82 ? 1_555 MG ? E MG . ? A MG 15 ? 1_555 O ? H HOH . ? A HOH 87 ? 1_555 150.7 ? 27 O ? H HOH . ? A HOH 83 ? 1_555 MG ? E MG . ? A MG 15 ? 1_555 O ? H HOH . ? A HOH 87 ? 1_555 89.9 ? 28 O ? H HOH . ? A HOH 84 ? 1_555 MG ? E MG . ? A MG 15 ? 1_555 O ? H HOH . ? A HOH 87 ? 1_555 90.7 ? 29 O ? H HOH . ? A HOH 85 ? 1_555 MG ? E MG . ? A MG 15 ? 1_555 O ? H HOH . ? A HOH 87 ? 1_555 82.2 ? 30 O ? H HOH . ? A HOH 86 ? 1_555 MG ? E MG . ? A MG 15 ? 1_555 O ? H HOH . ? A HOH 87 ? 1_555 104.7 ? 31 OP2 ? B DC 3 ? B DC 9 ? 1_555 NA ? G NA . ? B NA 17 ? 1_555 O ? I HOH . ? B HOH 93 ? 1_555 163.4 ? 32 OP2 ? B DC 3 ? B DC 9 ? 1_555 NA ? G NA . ? B NA 17 ? 1_555 O ? I HOH . ? B HOH 94 ? 1_555 107.0 ? 33 O ? I HOH . ? B HOH 93 ? 1_555 NA ? G NA . ? B NA 17 ? 1_555 O ? I HOH . ? B HOH 94 ? 1_555 76.3 ? 34 OP2 ? B DC 3 ? B DC 9 ? 1_555 NA ? G NA . ? B NA 17 ? 1_555 O ? I HOH . ? B HOH 95 ? 1_555 92.2 ? 35 O ? I HOH . ? B HOH 93 ? 1_555 NA ? G NA . ? B NA 17 ? 1_555 O ? I HOH . ? B HOH 95 ? 1_555 82.2 ? 36 O ? I HOH . ? B HOH 94 ? 1_555 NA ? G NA . ? B NA 17 ? 1_555 O ? I HOH . ? B HOH 95 ? 1_555 157.9 ? 37 OP2 ? B DC 3 ? B DC 9 ? 1_555 NA ? G NA . ? B NA 17 ? 1_555 O ? I HOH . ? B HOH 96 ? 1_555 80.0 ? 38 O ? I HOH . ? B HOH 93 ? 1_555 NA ? G NA . ? B NA 17 ? 1_555 O ? I HOH . ? B HOH 96 ? 1_555 85.0 ? 39 O ? I HOH . ? B HOH 94 ? 1_555 NA ? G NA . ? B NA 17 ? 1_555 O ? I HOH . ? B HOH 96 ? 1_555 77.3 ? 40 O ? I HOH . ? B HOH 95 ? 1_555 NA ? G NA . ? B NA 17 ? 1_555 O ? I HOH . ? B HOH 96 ? 1_555 95.6 ? 41 OP2 ? B DC 3 ? B DC 9 ? 1_555 NA ? G NA . ? B NA 17 ? 1_555 O ? I HOH . ? B HOH 97 ? 1_555 133.5 ? 42 O ? I HOH . ? B HOH 93 ? 1_555 NA ? G NA . ? B NA 17 ? 1_555 O ? I HOH . ? B HOH 97 ? 1_555 62.2 ? 43 O ? I HOH . ? B HOH 94 ? 1_555 NA ? G NA . ? B NA 17 ? 1_555 O ? I HOH . ? B HOH 97 ? 1_555 85.9 ? 44 O ? I HOH . ? B HOH 95 ? 1_555 NA ? G NA . ? B NA 17 ? 1_555 O ? I HOH . ? B HOH 97 ? 1_555 88.9 ? 45 O ? I HOH . ? B HOH 96 ? 1_555 NA ? G NA . ? B NA 17 ? 1_555 O ? I HOH . ? B HOH 97 ? 1_555 146.1 ? 46 O ? I HOH . ? B HOH 88 ? 1_555 MG ? F MG . ? B MG 16 ? 1_555 O ? I HOH . ? B HOH 89 ? 1_555 178.2 ? 47 O ? I HOH . ? B HOH 88 ? 1_555 MG ? F MG . ? B MG 16 ? 1_555 O ? I HOH . ? B HOH 90 ? 1_555 93.1 ? 48 O ? I HOH . ? B HOH 89 ? 1_555 MG ? F MG . ? B MG 16 ? 1_555 O ? I HOH . ? B HOH 90 ? 1_555 85.4 ? 49 O ? I HOH . ? B HOH 88 ? 1_555 MG ? F MG . ? B MG 16 ? 1_555 O ? I HOH . ? B HOH 91 ? 1_555 84.2 ? 50 O ? I HOH . ? B HOH 89 ? 1_555 MG ? F MG . ? B MG 16 ? 1_555 O ? I HOH . ? B HOH 91 ? 1_555 97.1 ? 51 O ? I HOH . ? B HOH 90 ? 1_555 MG ? F MG . ? B MG 16 ? 1_555 O ? I HOH . ? B HOH 91 ? 1_555 169.9 ? 52 O ? I HOH . ? B HOH 88 ? 1_555 MG ? F MG . ? B MG 16 ? 1_555 O ? I HOH . ? B HOH 92 ? 1_555 83.7 ? 53 O ? I HOH . ? B HOH 89 ? 1_555 MG ? F MG . ? B MG 16 ? 1_555 O ? I HOH . ? B HOH 92 ? 1_555 97.5 ? 54 O ? I HOH . ? B HOH 90 ? 1_555 MG ? F MG . ? B MG 16 ? 1_555 O ? I HOH . ? B HOH 92 ? 1_555 99.4 ? 55 O ? I HOH . ? B HOH 91 ? 1_555 MG ? F MG . ? B MG 16 ? 1_555 O ? I HOH . ? B HOH 92 ? 1_555 90.0 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A P24 13 ? 11 'BINDING SITE FOR RESIDUE P24 A 13' AC2 Software A MG 14 ? 7 'BINDING SITE FOR RESIDUE MG A 14' AC3 Software A MG 15 ? 7 'BINDING SITE FOR RESIDUE MG A 15' AC4 Software B MG 16 ? 5 'BINDING SITE FOR RESIDUE MG B 16' AC5 Software B NA 17 ? 6 'BINDING SITE FOR RESIDUE NA B 17' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 11 DG A 2 ? DG A 2 . ? 1_555 ? 2 AC1 11 DC A 3 ? DC A 3 . ? 1_555 ? 3 AC1 11 DG A 4 ? DG A 4 . ? 4_465 ? 4 AC1 11 DG A 4 ? DG A 4 . ? 1_555 ? 5 AC1 11 HOH H . ? HOH A 18 . ? 1_555 ? 6 AC1 11 HOH H . ? HOH A 20 . ? 1_555 ? 7 AC1 11 HOH H . ? HOH A 55 . ? 4_565 ? 8 AC1 11 HOH H . ? HOH A 72 . ? 4_565 ? 9 AC1 11 HOH H . ? HOH A 73 . ? 4_565 ? 10 AC1 11 HOH H . ? HOH A 74 . ? 4_565 ? 11 AC1 11 HOH H . ? HOH A 78 . ? 4_465 ? 12 AC2 7 DG A 6 ? DG A 6 . ? 1_555 ? 13 AC2 7 MG E . ? MG A 15 . ? 1_555 ? 14 AC2 7 HOH H . ? HOH A 79 . ? 1_555 ? 15 AC2 7 HOH H . ? HOH A 80 . ? 1_555 ? 16 AC2 7 HOH H . ? HOH A 81 . ? 1_555 ? 17 AC2 7 HOH H . ? HOH A 82 . ? 1_555 ? 18 AC2 7 HOH H . ? HOH A 83 . ? 1_555 ? 19 AC3 7 MG D . ? MG A 14 . ? 1_555 ? 20 AC3 7 HOH H . ? HOH A 82 . ? 1_555 ? 21 AC3 7 HOH H . ? HOH A 83 . ? 1_555 ? 22 AC3 7 HOH H . ? HOH A 84 . ? 1_555 ? 23 AC3 7 HOH H . ? HOH A 85 . ? 1_555 ? 24 AC3 7 HOH H . ? HOH A 86 . ? 1_555 ? 25 AC3 7 HOH H . ? HOH A 87 . ? 1_555 ? 26 AC4 5 HOH I . ? HOH B 88 . ? 1_555 ? 27 AC4 5 HOH I . ? HOH B 89 . ? 1_555 ? 28 AC4 5 HOH I . ? HOH B 90 . ? 1_555 ? 29 AC4 5 HOH I . ? HOH B 91 . ? 1_555 ? 30 AC4 5 HOH I . ? HOH B 92 . ? 1_555 ? 31 AC5 6 DC B 3 ? DC B 9 . ? 1_555 ? 32 AC5 6 HOH I . ? HOH B 93 . ? 1_555 ? 33 AC5 6 HOH I . ? HOH B 94 . ? 1_555 ? 34 AC5 6 HOH I . ? HOH B 95 . ? 1_555 ? 35 AC5 6 HOH I . ? HOH B 96 . ? 1_555 ? 36 AC5 6 HOH I . ? HOH B 97 . ? 1_555 ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 26 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 71 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.04 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 OP1 _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 DG _pdbx_validate_symm_contact.auth_seq_id_1 6 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 B _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 95 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 3_755 _pdbx_validate_symm_contact.dist 2.03 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O4'" A DG 2 ? ? "C4'" A DG 2 ? ? 1.377 1.446 -0.069 0.010 N 2 1 N9 A DG 2 ? ? C4 A DG 2 ? ? 1.425 1.375 0.050 0.008 N 3 1 "C2'" A DC 3 ? ? "C1'" A DC 3 ? ? 1.589 1.519 0.070 0.010 N 4 1 N3 A DG 4 ? ? C4 A DG 4 ? ? 1.392 1.350 0.042 0.007 N 5 1 N7 A DG 4 ? ? C8 A DG 4 ? ? 1.352 1.305 0.047 0.006 N 6 1 N9 A DG 4 ? ? C4 A DG 4 ? ? 1.424 1.375 0.049 0.008 N 7 1 "C5'" A DC 5 ? ? "C4'" A DC 5 ? ? 1.601 1.512 0.089 0.007 N 8 1 "C1'" A DC 5 ? ? N1 A DC 5 ? ? 1.574 1.488 0.086 0.013 N 9 1 P A DG 6 ? ? OP2 A DG 6 ? ? 1.358 1.485 -0.127 0.017 N 10 1 N7 A DG 6 ? ? C8 A DG 6 ? ? 1.344 1.305 0.039 0.006 N 11 1 "C2'" B DC 7 ? ? "C1'" B DC 7 ? ? 1.583 1.519 0.064 0.010 N 12 1 N1 B DC 7 ? ? C6 B DC 7 ? ? 1.404 1.367 0.037 0.006 N 13 1 N3 B DC 7 ? ? C4 B DC 7 ? ? 1.398 1.335 0.063 0.007 N 14 1 "C2'" B DG 8 ? ? "C1'" B DG 8 ? ? 1.590 1.519 0.071 0.010 N 15 1 "O3'" B DG 8 ? ? P B DC 9 ? ? 1.683 1.607 0.076 0.012 Y 16 1 P B DC 9 ? ? OP1 B DC 9 ? ? 1.283 1.485 -0.202 0.017 N 17 1 "C5'" B DC 9 ? ? "C4'" B DC 9 ? ? 1.576 1.512 0.064 0.007 N 18 1 "C2'" B DC 9 ? ? "C1'" B DC 9 ? ? 1.597 1.519 0.078 0.010 N 19 1 "O4'" B DC 9 ? ? "C4'" B DC 9 ? ? 1.379 1.446 -0.067 0.010 N 20 1 "C2'" B DG 10 ? ? "C1'" B DG 10 ? ? 1.601 1.519 0.082 0.010 N 21 1 C6 B DG 10 ? ? N1 B DG 10 ? ? 1.339 1.391 -0.052 0.007 N 22 1 C5 B DG 10 ? ? N7 B DG 10 ? ? 1.344 1.388 -0.044 0.006 N 23 1 C8 B DG 10 ? ? N9 B DG 10 ? ? 1.294 1.374 -0.080 0.007 N 24 1 P B DG 12 ? ? OP1 B DG 12 ? ? 1.361 1.485 -0.124 0.017 N 25 1 "C2'" B DG 12 ? ? "C1'" B DG 12 ? ? 1.591 1.519 0.072 0.010 N 26 1 C2 B DG 12 ? ? N3 B DG 12 ? ? 1.393 1.323 0.070 0.008 N 27 1 N3 B DG 12 ? ? C4 B DG 12 ? ? 1.304 1.350 -0.046 0.007 N 28 1 N9 B DG 12 ? ? C4 B DG 12 ? ? 1.426 1.375 0.051 0.008 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" A DC 1 ? ? "C2'" A DC 1 ? ? "C1'" A DC 1 ? ? 97.36 102.40 -5.04 0.80 N 2 1 N7 A DG 2 ? ? C8 A DG 2 ? ? N9 A DG 2 ? ? 108.13 113.10 -4.97 0.50 N 3 1 C8 A DG 2 ? ? N9 A DG 2 ? ? C4 A DG 2 ? ? 109.37 106.40 2.97 0.40 N 4 1 N9 A DG 2 ? ? C4 A DG 2 ? ? C5 A DG 2 ? ? 102.24 105.40 -3.16 0.40 N 5 1 N1 A DG 2 ? ? C6 A DG 2 ? ? O6 A DG 2 ? ? 123.90 119.90 4.00 0.60 N 6 1 C5 A DG 2 ? ? C6 A DG 2 ? ? O6 A DG 2 ? ? 123.03 128.60 -5.57 0.60 N 7 1 C2 A DC 3 ? ? N3 A DC 3 ? ? C4 A DC 3 ? ? 125.36 119.90 5.46 0.50 N 8 1 N3 A DC 3 ? ? C4 A DC 3 ? ? C5 A DC 3 ? ? 115.22 121.90 -6.68 0.40 N 9 1 C4 A DC 3 ? ? C5 A DC 3 ? ? C6 A DC 3 ? ? 122.34 117.40 4.94 0.50 N 10 1 N1 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 122.52 118.90 3.62 0.60 N 11 1 C5 A DC 3 ? ? C4 A DC 3 ? ? N4 A DC 3 ? ? 124.55 120.20 4.35 0.70 N 12 1 C5 A DG 4 ? ? C6 A DG 4 ? ? N1 A DG 4 ? ? 115.49 111.50 3.99 0.50 N 13 1 N3 A DG 4 ? ? C2 A DG 4 ? ? N2 A DG 4 ? ? 115.09 119.90 -4.81 0.70 N 14 1 N1 A DG 4 ? ? C6 A DG 4 ? ? O6 A DG 4 ? ? 116.27 119.90 -3.63 0.60 N 15 1 "C3'" A DC 5 ? ? "C2'" A DC 5 ? ? "C1'" A DC 5 ? ? 95.72 102.40 -6.68 0.80 N 16 1 N1 A DC 5 ? ? C2 A DC 5 ? ? O2 A DC 5 ? ? 123.97 118.90 5.07 0.60 N 17 1 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 111.11 108.30 2.81 0.30 N 18 1 N1 A DG 6 ? ? C2 A DG 6 ? ? N2 A DG 6 ? ? 122.35 116.20 6.15 0.90 N 19 1 N3 A DG 6 ? ? C2 A DG 6 ? ? N2 A DG 6 ? ? 115.70 119.90 -4.20 0.70 N 20 1 C5 B DC 7 ? ? C4 B DC 7 ? ? N4 B DC 7 ? ? 124.93 120.20 4.73 0.70 N 21 1 "C4'" B DG 8 ? ? "C3'" B DG 8 ? ? "C2'" B DG 8 ? ? 108.83 103.10 5.73 0.90 N 22 1 "O4'" B DG 8 ? ? "C1'" B DG 8 ? ? "C2'" B DG 8 ? ? 110.43 106.80 3.63 0.50 N 23 1 "O4'" B DG 8 ? ? "C1'" B DG 8 ? ? N9 B DG 8 ? ? 110.82 108.30 2.52 0.30 N 24 1 "O3'" B DG 8 ? ? P B DC 9 ? ? OP2 B DC 9 ? ? 117.44 110.50 6.94 1.10 Y 25 1 C6 B DC 9 ? ? N1 B DC 9 ? ? C2 B DC 9 ? ? 117.80 120.30 -2.50 0.40 N 26 1 C4 B DC 9 ? ? C5 B DC 9 ? ? C6 B DC 9 ? ? 112.86 117.40 -4.54 0.50 N 27 1 C5 B DC 9 ? ? C6 B DC 9 ? ? N1 B DC 9 ? ? 126.03 121.00 5.03 0.50 N 28 1 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 112.73 108.30 4.43 0.30 N 29 1 C6 B DG 10 ? ? N1 B DG 10 ? ? C2 B DG 10 ? ? 120.50 125.10 -4.60 0.60 N 30 1 C5 B DG 10 ? ? C6 B DG 10 ? ? N1 B DG 10 ? ? 115.85 111.50 4.35 0.50 N 31 1 N7 B DG 10 ? ? C8 B DG 10 ? ? N9 B DG 10 ? ? 117.02 113.10 3.92 0.50 N 32 1 C5 B DG 10 ? ? C6 B DG 10 ? ? O6 B DG 10 ? ? 124.10 128.60 -4.50 0.60 N 33 1 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? N1 B DC 11 ? ? 103.47 108.00 -4.53 0.70 N 34 1 C2 B DC 11 ? ? N3 B DC 11 ? ? C4 B DC 11 ? ? 123.31 119.90 3.41 0.50 N 35 1 N3 B DC 11 ? ? C4 B DC 11 ? ? C5 B DC 11 ? ? 118.36 121.90 -3.54 0.40 N 36 1 C5 B DC 11 ? ? C4 B DC 11 ? ? N4 B DC 11 ? ? 125.97 120.20 5.77 0.70 N 37 1 "O4'" B DG 12 ? ? "C4'" B DG 12 ? ? "C3'" B DG 12 ? ? 110.00 106.00 4.00 0.60 N 38 1 C5 B DG 12 ? ? C6 B DG 12 ? ? N1 B DG 12 ? ? 116.92 111.50 5.42 0.50 N 39 1 N9 B DG 12 ? ? C4 B DG 12 ? ? C5 B DG 12 ? ? 102.82 105.40 -2.58 0.40 N 40 1 N3 B DG 12 ? ? C4 B DG 12 ? ? N9 B DG 12 ? ? 129.96 126.00 3.96 0.60 N 41 1 C5 B DG 12 ? ? C6 B DG 12 ? ? O6 B DG 12 ? ? 124.20 128.60 -4.40 0.60 N # loop_ _refine_B_iso.class _refine_B_iso.details _refine_B_iso.treatment _refine_B_iso.pdbx_refine_id 'ALL ATOMS' TR isotropic 'X-RAY DIFFRACTION' 'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION' 'ALL IONS' TR isotropic 'X-RAY DIFFRACTION' # loop_ _refine_occupancy.class _refine_occupancy.treatment _refine_occupancy.pdbx_refine_id 'ALL ATOMS' fix 'X-RAY DIFFRACTION' 'ALL WATERS' fix 'X-RAY DIFFRACTION' 'ALL IONS' fix 'X-RAY DIFFRACTION' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DC OP3 O N N 1 DC P P N N 2 DC OP1 O N N 3 DC OP2 O N N 4 DC "O5'" O N N 5 DC "C5'" C N N 6 DC "C4'" C N R 7 DC "O4'" O N N 8 DC "C3'" C N S 9 DC "O3'" O N N 10 DC "C2'" C N N 11 DC "C1'" C N R 12 DC N1 N N N 13 DC C2 C N N 14 DC O2 O N N 15 DC N3 N N N 16 DC C4 C N N 17 DC N4 N N N 18 DC C5 C N N 19 DC C6 C N N 20 DC HOP3 H N N 21 DC HOP2 H N N 22 DC "H5'" H N N 23 DC "H5''" H N N 24 DC "H4'" H N N 25 DC "H3'" H N N 26 DC "HO3'" H N N 27 DC "H2'" H N N 28 DC "H2''" H N N 29 DC "H1'" H N N 30 DC H41 H N N 31 DC H42 H N N 32 DC H5 H N N 33 DC H6 H N N 34 DG OP3 O N N 35 DG P P N N 36 DG OP1 O N N 37 DG OP2 O N N 38 DG "O5'" O N N 39 DG "C5'" C N N 40 DG "C4'" C N R 41 DG "O4'" O N N 42 DG "C3'" C N S 43 DG "O3'" O N N 44 DG "C2'" C N N 45 DG "C1'" C N R 46 DG N9 N Y N 47 DG C8 C Y N 48 DG N7 N Y N 49 DG C5 C Y N 50 DG C6 C N N 51 DG O6 O N N 52 DG N1 N N N 53 DG C2 C N N 54 DG N2 N N N 55 DG N3 N N N 56 DG C4 C Y N 57 DG HOP3 H N N 58 DG HOP2 H N N 59 DG "H5'" H N N 60 DG "H5''" H N N 61 DG "H4'" H N N 62 DG "H3'" H N N 63 DG "HO3'" H N N 64 DG "H2'" H N N 65 DG "H2''" H N N 66 DG "H1'" H N N 67 DG H8 H N N 68 DG H1 H N N 69 DG H21 H N N 70 DG H22 H N N 71 HOH O O N N 72 HOH H1 H N N 73 HOH H2 H N N 74 MG MG MG N N 75 NA NA NA N N 76 P24 N1 N N N 77 P24 C2 C N N 78 P24 C3 C N N 79 P24 N4 N N N 80 P24 C5 C N N 81 P24 C6 C N N 82 P24 C7 C N N 83 P24 C8 C N N 84 P24 N9 N N N 85 P24 HN11 H N N 86 P24 HN12 H N N 87 P24 H21 H N N 88 P24 H22 H N N 89 P24 H31 H N N 90 P24 H32 H N N 91 P24 HN4 H N N 92 P24 H51 H N N 93 P24 H52 H N N 94 P24 H61 H N N 95 P24 H62 H N N 96 P24 H71 H N N 97 P24 H72 H N N 98 P24 H81 H N N 99 P24 H82 H N N 100 P24 HN91 H N N 101 P24 HN92 H N N 102 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DC OP3 P sing N N 1 DC OP3 HOP3 sing N N 2 DC P OP1 doub N N 3 DC P OP2 sing N N 4 DC P "O5'" sing N N 5 DC OP2 HOP2 sing N N 6 DC "O5'" "C5'" sing N N 7 DC "C5'" "C4'" sing N N 8 DC "C5'" "H5'" sing N N 9 DC "C5'" "H5''" sing N N 10 DC "C4'" "O4'" sing N N 11 DC "C4'" "C3'" sing N N 12 DC "C4'" "H4'" sing N N 13 DC "O4'" "C1'" sing N N 14 DC "C3'" "O3'" sing N N 15 DC "C3'" "C2'" sing N N 16 DC "C3'" "H3'" sing N N 17 DC "O3'" "HO3'" sing N N 18 DC "C2'" "C1'" sing N N 19 DC "C2'" "H2'" sing N N 20 DC "C2'" "H2''" sing N N 21 DC "C1'" N1 sing N N 22 DC "C1'" "H1'" sing N N 23 DC N1 C2 sing N N 24 DC N1 C6 sing N N 25 DC C2 O2 doub N N 26 DC C2 N3 sing N N 27 DC N3 C4 doub N N 28 DC C4 N4 sing N N 29 DC C4 C5 sing N N 30 DC N4 H41 sing N N 31 DC N4 H42 sing N N 32 DC C5 C6 doub N N 33 DC C5 H5 sing N N 34 DC C6 H6 sing N N 35 DG OP3 P sing N N 36 DG OP3 HOP3 sing N N 37 DG P OP1 doub N N 38 DG P OP2 sing N N 39 DG P "O5'" sing N N 40 DG OP2 HOP2 sing N N 41 DG "O5'" "C5'" sing N N 42 DG "C5'" "C4'" sing N N 43 DG "C5'" "H5'" sing N N 44 DG "C5'" "H5''" sing N N 45 DG "C4'" "O4'" sing N N 46 DG "C4'" "C3'" sing N N 47 DG "C4'" "H4'" sing N N 48 DG "O4'" "C1'" sing N N 49 DG "C3'" "O3'" sing N N 50 DG "C3'" "C2'" sing N N 51 DG "C3'" "H3'" sing N N 52 DG "O3'" "HO3'" sing N N 53 DG "C2'" "C1'" sing N N 54 DG "C2'" "H2'" sing N N 55 DG "C2'" "H2''" sing N N 56 DG "C1'" N9 sing N N 57 DG "C1'" "H1'" sing N N 58 DG N9 C8 sing Y N 59 DG N9 C4 sing Y N 60 DG C8 N7 doub Y N 61 DG C8 H8 sing N N 62 DG N7 C5 sing Y N 63 DG C5 C6 sing N N 64 DG C5 C4 doub Y N 65 DG C6 O6 doub N N 66 DG C6 N1 sing N N 67 DG N1 C2 sing N N 68 DG N1 H1 sing N N 69 DG C2 N2 sing N N 70 DG C2 N3 doub N N 71 DG N2 H21 sing N N 72 DG N2 H22 sing N N 73 DG N3 C4 sing N N 74 HOH O H1 sing N N 75 HOH O H2 sing N N 76 P24 N1 C2 sing N N 77 P24 N1 HN11 sing N N 78 P24 N1 HN12 sing N N 79 P24 C2 C3 sing N N 80 P24 C2 H21 sing N N 81 P24 C2 H22 sing N N 82 P24 C3 N4 sing N N 83 P24 C3 H31 sing N N 84 P24 C3 H32 sing N N 85 P24 N4 C5 sing N N 86 P24 N4 HN4 sing N N 87 P24 C5 C6 sing N N 88 P24 C5 H51 sing N N 89 P24 C5 H52 sing N N 90 P24 C6 C7 sing N N 91 P24 C6 H61 sing N N 92 P24 C6 H62 sing N N 93 P24 C7 C8 sing N N 94 P24 C7 H71 sing N N 95 P24 C7 H72 sing N N 96 P24 C8 N9 sing N N 97 P24 C8 H81 sing N N 98 P24 C8 H82 sing N N 99 P24 N9 HN91 sing N N 100 P24 N9 HN92 sing N N 101 # _ndb_struct_conf_na.entry_id 292D _ndb_struct_conf_na.feature 'z-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 6 1_555 -0.211 -0.198 0.021 2.887 -0.843 2.088 1 A_DC1:DG12_B A 1 ? B 12 ? 19 1 1 A DG 2 1_555 B DC 5 1_555 0.334 -0.165 -0.003 -4.474 -3.653 1.379 2 A_DG2:DC11_B A 2 ? B 11 ? 19 1 1 A DC 3 1_555 B DG 4 1_555 -0.250 -0.184 -0.013 5.428 -3.931 2.043 3 A_DC3:DG10_B A 3 ? B 10 ? 19 1 1 A DG 4 1_555 B DC 3 1_555 0.205 -0.102 0.174 -6.622 0.845 2.121 4 A_DG4:DC9_B A 4 ? B 9 ? 19 1 1 A DC 5 1_555 B DG 2 1_555 -0.172 -0.131 0.069 1.742 -0.038 2.255 5 A_DC5:DG8_B A 5 ? B 8 ? 19 1 1 A DG 6 1_555 B DC 1 1_555 0.336 -0.091 0.088 0.239 1.690 1.089 6 A_DG6:DC7_B A 6 ? B 7 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 6 1_555 A DG 2 1_555 B DC 5 1_555 0.017 5.310 3.611 -1.141 -5.187 -5.319 -10.222 -6.534 6.222 43.937 -9.668 -7.515 1 AA_DC1DG2:DC11DG12_BB A 1 ? B 12 ? A 2 ? B 11 ? 1 A DG 2 1_555 B DC 5 1_555 A DC 3 1_555 B DG 4 1_555 -0.010 -1.030 3.320 -0.065 -4.161 -52.472 1.434 -0.016 3.235 4.698 -0.073 -52.625 2 AA_DG2DC3:DG10DC11_BB A 2 ? B 11 ? A 3 ? B 10 ? 1 A DC 3 1_555 B DG 4 1_555 A DG 4 1_555 B DC 3 1_555 0.033 5.415 3.824 -0.370 -3.505 -6.711 -22.964 -1.649 5.890 27.576 -2.913 -7.580 3 AA_DC3DG4:DC9DG10_BB A 3 ? B 10 ? A 4 ? B 9 ? 1 A DG 4 1_555 B DC 3 1_555 A DC 5 1_555 B DG 2 1_555 -0.043 -0.799 3.272 0.325 -2.033 -52.396 1.037 -0.027 3.242 2.302 0.367 -52.433 4 AA_DG4DC5:DG8DC9_BB A 4 ? B 9 ? A 5 ? B 8 ? 1 A DC 5 1_555 B DG 2 1_555 A DG 6 1_555 B DC 1 1_555 0.084 5.322 3.538 0.622 -0.947 -9.146 -30.692 2.121 4.052 5.907 3.881 -9.216 5 AA_DC5DG6:DC7DG8_BB A 5 ? B 8 ? A 6 ? B 7 ? # _pdbx_initial_refinement_model.accession_code 2DCG _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.details ZDF001 # _atom_sites.entry_id 292D _atom_sites.fract_transf_matrix[1][1] 0.055741 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.032020 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022447 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N NA O P # loop_