data_293D # _entry.id 293D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 293D pdb_0000293d 10.2210/pdb293d/pdb RCSB ZDF052 ? ? WWPDB D_1000177706 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1996-12-02 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-14 5 'Structure model' 1 4 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_struct_conn_angle 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_site 7 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.value' 16 4 'Structure model' '_struct_conn.pdbx_dist_value' 17 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 18 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 19 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 20 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 21 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 22 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 23 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 24 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 25 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 26 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 27 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 28 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 29 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 30 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 31 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 293D _pdbx_database_status.recvd_initial_deposition_date 1996-10-09 _pdbx_database_status.deposit_site NDB _pdbx_database_status.process_site NDB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ohishi, H.' 1 'Nakanishi, I.' 2 'Inubushi, K.' 3 'Van Der Marel, G.A.' 4 'Van Boom, J.H.' 5 'Rich, A.' 6 'Wang, A.H.-J.' 7 'Hakoshima, T.' 8 'Tomita, K.' 9 # _citation.id primary _citation.title 'Interaction between the left-handed Z-DNA and polyamine-2. The crystal structure of the d(CG)3 and spermidine complex.' _citation.journal_abbrev 'FEBS Lett.' _citation.journal_volume 391 _citation.page_first 153 _citation.page_last 156 _citation.year 1996 _citation.journal_id_ASTM FEBLAL _citation.country NE _citation.journal_id_ISSN 0014-5793 _citation.journal_id_CSD 0165 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 8706905 _citation.pdbx_database_id_DOI '10.1016/0014-5793(96)00723-5' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ohishi, H.' 1 ? primary 'Nakanishi, I.' 2 ? primary 'Inubushi, K.' 3 ? primary 'van der Marel, G.' 4 ? primary 'van Boom, J.H.' 5 ? primary 'Rich, A.' 6 ? primary 'Wang, A.H.' 7 ? primary 'Hakoshima, T.' 8 ? primary 'Tomita, K.' 9 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*GP*CP*GP*CP*G)-3') ; 1810.205 2 ? ? ? ? 2 non-polymer syn SPERMIDINE 145.246 1 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 3 ? ? ? ? 4 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 5 water nat water 18.015 95 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DC)(DG)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGCGCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 SPERMIDINE SPD 3 'MAGNESIUM ION' MG 4 'SODIUM ION' NA 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DC n 1 4 DG n 1 5 DC n 1 6 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 SPD non-polymer . SPERMIDINE 'N-(2-AMINO-PROPYL)-1,4-DIAMINOBUTANE; PA(34)' 'C7 H19 N3' 145.246 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DC 5 5 5 DC C A . n A 1 6 DG 6 6 6 DG G A . n B 1 1 DC 1 7 7 DC C B . n B 1 2 DG 2 8 8 DG G B . n B 1 3 DC 3 9 9 DC C B . n B 1 4 DG 4 10 10 DG G B . n B 1 5 DC 5 11 11 DC C B . n B 1 6 DG 6 12 12 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SPD 1 13 13 SPD SPD A . D 3 MG 1 15 15 MG MO6 A . E 4 NA 1 17 17 NA NA6 A . F 3 MG 1 14 14 MG MO5 B . G 3 MG 1 16 16 MG MO6 B . H 5 HOH 1 18 18 HOH HOH A . H 5 HOH 2 19 19 HOH HOH A . H 5 HOH 3 22 22 HOH HOH A . H 5 HOH 4 23 23 HOH HOH A . H 5 HOH 5 24 24 HOH HOH A . H 5 HOH 6 28 28 HOH HOH A . H 5 HOH 7 29 29 HOH HOH A . H 5 HOH 8 30 30 HOH HOH A . H 5 HOH 9 32 32 HOH HOH A . H 5 HOH 10 33 33 HOH HOH A . H 5 HOH 11 34 34 HOH HOH A . H 5 HOH 12 35 35 HOH HOH A . H 5 HOH 13 37 37 HOH HOH A . H 5 HOH 14 39 39 HOH HOH A . H 5 HOH 15 40 40 HOH HOH A . H 5 HOH 16 41 41 HOH HOH A . H 5 HOH 17 43 43 HOH HOH A . H 5 HOH 18 44 44 HOH HOH A . H 5 HOH 19 45 45 HOH HOH A . H 5 HOH 20 46 46 HOH HOH A . H 5 HOH 21 49 49 HOH HOH A . H 5 HOH 22 50 50 HOH HOH A . H 5 HOH 23 51 51 HOH HOH A . H 5 HOH 24 52 52 HOH HOH A . H 5 HOH 25 55 55 HOH HOH A . H 5 HOH 26 58 58 HOH HOH A . H 5 HOH 27 59 59 HOH HOH A . H 5 HOH 28 64 64 HOH HOH A . H 5 HOH 29 68 68 HOH HOH A . H 5 HOH 30 69 69 HOH HOH A . H 5 HOH 31 70 70 HOH HOH A . H 5 HOH 32 74 74 HOH HOH A . H 5 HOH 33 75 75 HOH HOH A . H 5 HOH 34 76 76 HOH HOH A . H 5 HOH 35 77 77 HOH HOH A . H 5 HOH 36 78 78 HOH HOH A . H 5 HOH 37 79 79 HOH HOH A . H 5 HOH 38 80 80 HOH HOH A . H 5 HOH 39 81 81 HOH HOH A . H 5 HOH 40 82 82 HOH HOH A . H 5 HOH 41 83 83 HOH HOH A . H 5 HOH 42 84 84 HOH HOH A . H 5 HOH 43 85 85 HOH HOH A . H 5 HOH 44 86 86 HOH HOH A . H 5 HOH 45 87 87 HOH HOH A . H 5 HOH 46 88 88 HOH HOH A . H 5 HOH 47 91 91 HOH HOH A . H 5 HOH 48 93 14 HOH MO5 A . H 5 HOH 49 95 14 HOH MO5 A . H 5 HOH 50 97 15 HOH MO6 A . H 5 HOH 51 98 15 HOH MO6 A . H 5 HOH 52 99 15 HOH MO6 A . H 5 HOH 53 101 16 HOH MO6 A . H 5 HOH 54 104 16 HOH MO6 A . H 5 HOH 55 105 16 HOH MO6 A . H 5 HOH 56 107 17 HOH NA6 A . H 5 HOH 57 108 17 HOH NA6 A . H 5 HOH 58 109 17 HOH NA6 A . H 5 HOH 59 110 17 HOH NA6 A . H 5 HOH 60 111 17 HOH NA6 A . H 5 HOH 61 112 17 HOH NA6 A . I 5 HOH 1 20 20 HOH HOH B . I 5 HOH 2 21 21 HOH HOH B . I 5 HOH 3 25 25 HOH HOH B . I 5 HOH 4 26 26 HOH HOH B . I 5 HOH 5 27 27 HOH HOH B . I 5 HOH 6 31 31 HOH HOH B . I 5 HOH 7 36 36 HOH HOH B . I 5 HOH 8 38 38 HOH HOH B . I 5 HOH 9 42 42 HOH HOH B . I 5 HOH 10 47 47 HOH HOH B . I 5 HOH 11 48 48 HOH HOH B . I 5 HOH 12 53 53 HOH HOH B . I 5 HOH 13 54 54 HOH HOH B . I 5 HOH 14 56 56 HOH HOH B . I 5 HOH 15 57 57 HOH HOH B . I 5 HOH 16 60 60 HOH HOH B . I 5 HOH 17 61 61 HOH HOH B . I 5 HOH 18 62 62 HOH HOH B . I 5 HOH 19 63 63 HOH HOH B . I 5 HOH 20 65 65 HOH HOH B . I 5 HOH 21 66 66 HOH HOH B . I 5 HOH 22 67 67 HOH HOH B . I 5 HOH 23 71 71 HOH HOH B . I 5 HOH 24 72 72 HOH HOH B . I 5 HOH 25 73 73 HOH HOH B . I 5 HOH 26 89 89 HOH HOH B . I 5 HOH 27 90 90 HOH HOH B . I 5 HOH 28 92 14 HOH MO5 B . I 5 HOH 29 94 14 HOH MO5 B . I 5 HOH 30 96 14 HOH MO5 B . I 5 HOH 31 100 15 HOH MO6 B . I 5 HOH 32 102 16 HOH MO6 B . I 5 HOH 33 103 16 HOH MO6 B . I 5 HOH 34 106 16 HOH MO6 B . # _software.name NUCLSQ _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # _cell.entry_id 293D _cell.length_a 17.930 _cell.length_b 31.230 _cell.length_c 44.640 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 293D _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # _exptl.entry_id 293D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.73 _exptl_crystal.density_percent_sol 28.74 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.00 _exptl_crystal_grow.pdbx_details 'pH 7.00, VAPOR DIFFUSION' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 MGCL2 ? ? ? 1 3 1 'NA CACODYLATE' ? ? ? 1 4 1 SPERMIDINE_HCL ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 283.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector DIFFRACTOMETER _diffrn_detector.type 'NICOLET P3' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source ? _diffrn_source.type ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 293D _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low ? _reflns.d_resolution_high 1.000 _reflns.number_obs ? _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 293D _refine.ls_number_reflns_obs 6301 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 3.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high 1.000 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.1910000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ZDF001 _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 240 _refine_hist.pdbx_number_atoms_ligand 35 _refine_hist.number_atoms_solvent 74 _refine_hist.number_atoms_total 349 _refine_hist.d_res_high 1.000 _refine_hist.d_res_low . # _database_PDB_matrix.entry_id 293D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 293D _struct.title 'INTERACTION BETWEEN THE LEFT-HANDED Z-DNA AND POLYAMINE-2: THE CRYSTAL STRUCTURE OF THE D(CG)3 AND SPERMIDINE COMPLEX' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 293D _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'Z-DNA, DOUBLE HELIX, COMPLEXED WITH SPERMIDINE, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 3 ? G N N 3 ? H N N 5 ? I N N 5 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 293D _struct_ref.pdbx_db_accession 293D _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 293D A 1 ? 6 ? 293D 1 ? 6 ? 1 6 2 1 293D B 1 ? 6 ? 293D 7 ? 12 ? 7 12 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? D MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 15 A HOH 95 1_555 ? ? ? ? ? ? ? 2.002 ? ? metalc2 metalc ? ? D MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 15 A HOH 99 1_555 ? ? ? ? ? ? ? 2.411 ? ? metalc3 metalc ? ? D MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 15 B HOH 96 1_555 ? ? ? ? ? ? ? 2.394 ? ? metalc4 metalc ? ? E NA . NA ? ? ? 1_555 H HOH . O ? ? A NA 17 A HOH 107 1_555 ? ? ? ? ? ? ? 2.413 ? ? metalc5 metalc ? ? E NA . NA ? ? ? 1_555 H HOH . O ? ? A NA 17 A HOH 108 1_555 ? ? ? ? ? ? ? 2.142 ? ? metalc6 metalc ? ? E NA . NA ? ? ? 1_555 H HOH . O ? ? A NA 17 A HOH 109 1_555 ? ? ? ? ? ? ? 2.220 ? ? metalc7 metalc ? ? E NA . NA ? ? ? 1_555 H HOH . O ? ? A NA 17 A HOH 110 1_555 ? ? ? ? ? ? ? 2.290 ? ? metalc8 metalc ? ? E NA . NA ? ? ? 1_555 H HOH . O ? ? A NA 17 A HOH 111 1_555 ? ? ? ? ? ? ? 2.540 ? ? metalc9 metalc ? ? E NA . NA ? ? ? 1_555 H HOH . O ? ? A NA 17 A HOH 112 1_555 ? ? ? ? ? ? ? 2.191 ? ? metalc10 metalc ? ? H HOH . O ? ? ? 1_555 F MG . MG ? ? A HOH 93 B MG 14 1_555 ? ? ? ? ? ? ? 2.339 ? ? metalc11 metalc ? ? H HOH . O ? ? ? 1_555 F MG . MG ? ? A HOH 95 B MG 14 1_555 ? ? ? ? ? ? ? 2.032 ? ? metalc12 metalc ? ? H HOH . O ? ? ? 1_555 G MG . MG ? ? A HOH 101 B MG 16 1_555 ? ? ? ? ? ? ? 2.216 ? ? metalc13 metalc ? ? H HOH . O ? ? ? 1_555 G MG . MG ? ? A HOH 104 B MG 16 1_555 ? ? ? ? ? ? ? 2.165 ? ? metalc14 metalc ? ? H HOH . O ? ? ? 1_555 G MG . MG ? ? A HOH 105 B MG 16 1_555 ? ? ? ? ? ? ? 2.262 ? ? metalc15 metalc ? ? F MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 14 B HOH 92 1_555 ? ? ? ? ? ? ? 2.179 ? ? metalc16 metalc ? ? F MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 14 B HOH 94 1_555 ? ? ? ? ? ? ? 2.369 ? ? metalc17 metalc ? ? F MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 14 B HOH 96 1_555 ? ? ? ? ? ? ? 2.181 ? ? metalc18 metalc ? ? G MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 16 B HOH 102 1_555 ? ? ? ? ? ? ? 2.311 ? ? metalc19 metalc ? ? G MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 16 B HOH 103 1_555 ? ? ? ? ? ? ? 2.215 ? ? metalc20 metalc ? ? G MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 16 B HOH 106 1_555 ? ? ? ? ? ? ? 2.334 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 6 N1 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 6 O6 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 6 N2 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 5 N3 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 5 O2 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 5 N4 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 6 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 6 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 6 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? H HOH . ? A HOH 95 ? 1_555 MG ? D MG . ? A MG 15 ? 1_555 O ? H HOH . ? A HOH 99 ? 1_555 75.7 ? 2 O ? H HOH . ? A HOH 95 ? 1_555 MG ? D MG . ? A MG 15 ? 1_555 O ? I HOH . ? B HOH 96 ? 1_555 89.4 ? 3 O ? H HOH . ? A HOH 99 ? 1_555 MG ? D MG . ? A MG 15 ? 1_555 O ? I HOH . ? B HOH 96 ? 1_555 152.5 ? 4 O ? H HOH . ? A HOH 107 ? 1_555 NA ? E NA . ? A NA 17 ? 1_555 O ? H HOH . ? A HOH 108 ? 1_555 165.2 ? 5 O ? H HOH . ? A HOH 107 ? 1_555 NA ? E NA . ? A NA 17 ? 1_555 O ? H HOH . ? A HOH 109 ? 1_555 86.5 ? 6 O ? H HOH . ? A HOH 108 ? 1_555 NA ? E NA . ? A NA 17 ? 1_555 O ? H HOH . ? A HOH 109 ? 1_555 89.6 ? 7 O ? H HOH . ? A HOH 107 ? 1_555 NA ? E NA . ? A NA 17 ? 1_555 O ? H HOH . ? A HOH 110 ? 1_555 87.6 ? 8 O ? H HOH . ? A HOH 108 ? 1_555 NA ? E NA . ? A NA 17 ? 1_555 O ? H HOH . ? A HOH 110 ? 1_555 95.7 ? 9 O ? H HOH . ? A HOH 109 ? 1_555 NA ? E NA . ? A NA 17 ? 1_555 O ? H HOH . ? A HOH 110 ? 1_555 174.0 ? 10 O ? H HOH . ? A HOH 107 ? 1_555 NA ? E NA . ? A NA 17 ? 1_555 O ? H HOH . ? A HOH 111 ? 1_555 87.9 ? 11 O ? H HOH . ? A HOH 108 ? 1_555 NA ? E NA . ? A NA 17 ? 1_555 O ? H HOH . ? A HOH 111 ? 1_555 77.5 ? 12 O ? H HOH . ? A HOH 109 ? 1_555 NA ? E NA . ? A NA 17 ? 1_555 O ? H HOH . ? A HOH 111 ? 1_555 83.2 ? 13 O ? H HOH . ? A HOH 110 ? 1_555 NA ? E NA . ? A NA 17 ? 1_555 O ? H HOH . ? A HOH 111 ? 1_555 95.2 ? 14 O ? H HOH . ? A HOH 107 ? 1_555 NA ? E NA . ? A NA 17 ? 1_555 O ? H HOH . ? A HOH 112 ? 1_555 85.4 ? 15 O ? H HOH . ? A HOH 108 ? 1_555 NA ? E NA . ? A NA 17 ? 1_555 O ? H HOH . ? A HOH 112 ? 1_555 107.2 ? 16 O ? H HOH . ? A HOH 109 ? 1_555 NA ? E NA . ? A NA 17 ? 1_555 O ? H HOH . ? A HOH 112 ? 1_555 73.8 ? 17 O ? H HOH . ? A HOH 110 ? 1_555 NA ? E NA . ? A NA 17 ? 1_555 O ? H HOH . ? A HOH 112 ? 1_555 107.1 ? 18 O ? H HOH . ? A HOH 111 ? 1_555 NA ? E NA . ? A NA 17 ? 1_555 O ? H HOH . ? A HOH 112 ? 1_555 156.4 ? 19 O ? H HOH . ? A HOH 93 ? 1_555 MG ? F MG . ? B MG 14 ? 1_555 O ? H HOH . ? A HOH 95 ? 1_555 87.5 ? 20 O ? H HOH . ? A HOH 93 ? 1_555 MG ? F MG . ? B MG 14 ? 1_555 O ? I HOH . ? B HOH 92 ? 1_555 172.2 ? 21 O ? H HOH . ? A HOH 95 ? 1_555 MG ? F MG . ? B MG 14 ? 1_555 O ? I HOH . ? B HOH 92 ? 1_555 98.7 ? 22 O ? H HOH . ? A HOH 93 ? 1_555 MG ? F MG . ? B MG 14 ? 1_555 O ? I HOH . ? B HOH 94 ? 1_555 95.0 ? 23 O ? H HOH . ? A HOH 95 ? 1_555 MG ? F MG . ? B MG 14 ? 1_555 O ? I HOH . ? B HOH 94 ? 1_555 176.9 ? 24 O ? I HOH . ? B HOH 92 ? 1_555 MG ? F MG . ? B MG 14 ? 1_555 O ? I HOH . ? B HOH 94 ? 1_555 78.7 ? 25 O ? H HOH . ? A HOH 93 ? 1_555 MG ? F MG . ? B MG 14 ? 1_555 O ? I HOH . ? B HOH 96 ? 1_555 97.1 ? 26 O ? H HOH . ? A HOH 95 ? 1_555 MG ? F MG . ? B MG 14 ? 1_555 O ? I HOH . ? B HOH 96 ? 1_555 94.9 ? 27 O ? I HOH . ? B HOH 92 ? 1_555 MG ? F MG . ? B MG 14 ? 1_555 O ? I HOH . ? B HOH 96 ? 1_555 87.0 ? 28 O ? I HOH . ? B HOH 94 ? 1_555 MG ? F MG . ? B MG 14 ? 1_555 O ? I HOH . ? B HOH 96 ? 1_555 86.6 ? 29 O ? H HOH . ? A HOH 101 ? 1_555 MG ? G MG . ? B MG 16 ? 1_555 O ? H HOH . ? A HOH 104 ? 1_555 80.8 ? 30 O ? H HOH . ? A HOH 101 ? 1_555 MG ? G MG . ? B MG 16 ? 1_555 O ? H HOH . ? A HOH 105 ? 1_555 79.5 ? 31 O ? H HOH . ? A HOH 104 ? 1_555 MG ? G MG . ? B MG 16 ? 1_555 O ? H HOH . ? A HOH 105 ? 1_555 79.4 ? 32 O ? H HOH . ? A HOH 101 ? 1_555 MG ? G MG . ? B MG 16 ? 1_555 O ? I HOH . ? B HOH 102 ? 1_555 177.6 ? 33 O ? H HOH . ? A HOH 104 ? 1_555 MG ? G MG . ? B MG 16 ? 1_555 O ? I HOH . ? B HOH 102 ? 1_555 101.6 ? 34 O ? H HOH . ? A HOH 105 ? 1_555 MG ? G MG . ? B MG 16 ? 1_555 O ? I HOH . ? B HOH 102 ? 1_555 101.0 ? 35 O ? H HOH . ? A HOH 101 ? 1_555 MG ? G MG . ? B MG 16 ? 1_555 O ? I HOH . ? B HOH 103 ? 1_555 97.2 ? 36 O ? H HOH . ? A HOH 104 ? 1_555 MG ? G MG . ? B MG 16 ? 1_555 O ? I HOH . ? B HOH 103 ? 1_555 177.1 ? 37 O ? H HOH . ? A HOH 105 ? 1_555 MG ? G MG . ? B MG 16 ? 1_555 O ? I HOH . ? B HOH 103 ? 1_555 102.4 ? 38 O ? I HOH . ? B HOH 102 ? 1_555 MG ? G MG . ? B MG 16 ? 1_555 O ? I HOH . ? B HOH 103 ? 1_555 80.4 ? 39 O ? H HOH . ? A HOH 101 ? 1_555 MG ? G MG . ? B MG 16 ? 1_555 O ? I HOH . ? B HOH 106 ? 1_555 98.4 ? 40 O ? H HOH . ? A HOH 104 ? 1_555 MG ? G MG . ? B MG 16 ? 1_555 O ? I HOH . ? B HOH 106 ? 1_555 107.2 ? 41 O ? H HOH . ? A HOH 105 ? 1_555 MG ? G MG . ? B MG 16 ? 1_555 O ? I HOH . ? B HOH 106 ? 1_555 172.7 ? 42 O ? I HOH . ? B HOH 102 ? 1_555 MG ? G MG . ? B MG 16 ? 1_555 O ? I HOH . ? B HOH 106 ? 1_555 80.8 ? 43 O ? I HOH . ? B HOH 103 ? 1_555 MG ? G MG . ? B MG 16 ? 1_555 O ? I HOH . ? B HOH 106 ? 1_555 70.9 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SPD 13 ? 12 'BINDING SITE FOR RESIDUE SPD A 13' AC2 Software B MG 14 ? 7 'BINDING SITE FOR RESIDUE MG B 14' AC3 Software A MG 15 ? 7 'BINDING SITE FOR RESIDUE MG A 15' AC4 Software B MG 16 ? 6 'BINDING SITE FOR RESIDUE MG B 16' AC5 Software A NA 17 ? 7 'BINDING SITE FOR RESIDUE NA A 17' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 12 DC A 3 ? DC A 3 . ? 1_655 ? 2 AC1 12 HOH H . ? HOH A 18 . ? 4_565 ? 3 AC1 12 HOH H . ? HOH A 28 . ? 1_655 ? 4 AC1 12 HOH H . ? HOH A 34 . ? 1_655 ? 5 AC1 12 HOH H . ? HOH A 35 . ? 4_565 ? 6 AC1 12 HOH H . ? HOH A 43 . ? 1_655 ? 7 AC1 12 HOH H . ? HOH A 68 . ? 1_655 ? 8 AC1 12 HOH H . ? HOH A 82 . ? 1_555 ? 9 AC1 12 HOH H . ? HOH A 83 . ? 4_565 ? 10 AC1 12 HOH H . ? HOH A 88 . ? 1_655 ? 11 AC1 12 DG B 2 ? DG B 8 . ? 3_755 ? 12 AC1 12 HOH I . ? HOH B 36 . ? 4_565 ? 13 AC2 7 DG A 6 ? DG A 6 . ? 3_645 ? 14 AC2 7 MG D . ? MG A 15 . ? 1_555 ? 15 AC2 7 HOH H . ? HOH A 93 . ? 1_555 ? 16 AC2 7 HOH H . ? HOH A 95 . ? 1_555 ? 17 AC2 7 HOH I . ? HOH B 92 . ? 1_555 ? 18 AC2 7 HOH I . ? HOH B 94 . ? 1_555 ? 19 AC2 7 HOH I . ? HOH B 96 . ? 1_555 ? 20 AC3 7 HOH H . ? HOH A 95 . ? 1_555 ? 21 AC3 7 HOH H . ? HOH A 97 . ? 1_555 ? 22 AC3 7 HOH H . ? HOH A 98 . ? 1_555 ? 23 AC3 7 HOH H . ? HOH A 99 . ? 1_555 ? 24 AC3 7 MG F . ? MG B 14 . ? 1_555 ? 25 AC3 7 HOH I . ? HOH B 96 . ? 1_555 ? 26 AC3 7 HOH I . ? HOH B 100 . ? 1_555 ? 27 AC4 6 HOH H . ? HOH A 101 . ? 1_555 ? 28 AC4 6 HOH H . ? HOH A 104 . ? 1_555 ? 29 AC4 6 HOH H . ? HOH A 105 . ? 1_555 ? 30 AC4 6 HOH I . ? HOH B 102 . ? 1_555 ? 31 AC4 6 HOH I . ? HOH B 103 . ? 1_555 ? 32 AC4 6 HOH I . ? HOH B 106 . ? 1_555 ? 33 AC5 7 HOH H . ? HOH A 79 . ? 1_655 ? 34 AC5 7 HOH H . ? HOH A 107 . ? 1_555 ? 35 AC5 7 HOH H . ? HOH A 108 . ? 1_555 ? 36 AC5 7 HOH H . ? HOH A 109 . ? 1_555 ? 37 AC5 7 HOH H . ? HOH A 110 . ? 1_555 ? 38 AC5 7 HOH H . ? HOH A 111 . ? 1_555 ? 39 AC5 7 HOH H . ? HOH A 112 . ? 1_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 58 ? ? O A HOH 109 ? ? 1.93 2 1 OP1 A DG 6 ? ? O A HOH 112 ? ? 2.05 3 1 O A HOH 41 ? ? O A HOH 87 ? ? 2.10 4 1 O A HOH 68 ? ? O A HOH 79 ? ? 2.12 5 1 O A HOH 77 ? ? O B HOH 27 ? ? 2.17 6 1 O A HOH 18 ? ? O B HOH 25 ? ? 2.19 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 79 ? ? 1_555 O A HOH 112 ? ? 1_455 1.09 2 1 O A HOH 37 ? ? 1_555 O B HOH 36 ? ? 4_465 1.72 3 1 O A HOH 111 ? ? 1_555 O B HOH 90 ? ? 3_655 2.11 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C5'" A DC 1 ? ? "C4'" A DC 1 ? ? 1.580 1.512 0.068 0.007 N 2 1 C2 A DC 1 ? ? O2 A DC 1 ? ? 1.170 1.240 -0.070 0.009 N 3 1 C4 A DC 1 ? ? N4 A DC 1 ? ? 1.394 1.335 0.059 0.009 N 4 1 C4 A DC 1 ? ? C5 A DC 1 ? ? 1.494 1.425 0.069 0.008 N 5 1 "O4'" A DG 2 ? ? "C4'" A DG 2 ? ? 1.357 1.446 -0.089 0.010 N 6 1 N1 A DG 2 ? ? C2 A DG 2 ? ? 1.304 1.373 -0.069 0.008 N 7 1 C2 A DG 2 ? ? N3 A DG 2 ? ? 1.405 1.323 0.082 0.008 N 8 1 C4 A DG 2 ? ? C5 A DG 2 ? ? 1.317 1.379 -0.062 0.007 N 9 1 C5 A DG 2 ? ? C6 A DG 2 ? ? 1.493 1.419 0.074 0.010 N 10 1 C8 A DG 2 ? ? N9 A DG 2 ? ? 1.322 1.374 -0.052 0.007 N 11 1 N9 A DG 2 ? ? C4 A DG 2 ? ? 1.497 1.375 0.122 0.008 N 12 1 "C5'" A DC 3 ? ? "C4'" A DC 3 ? ? 1.629 1.512 0.117 0.007 N 13 1 N1 A DC 3 ? ? C6 A DC 3 ? ? 1.422 1.367 0.055 0.006 N 14 1 N3 A DC 3 ? ? C4 A DC 3 ? ? 1.434 1.335 0.099 0.007 N 15 1 C5 A DC 3 ? ? C6 A DC 3 ? ? 1.291 1.339 -0.048 0.008 N 16 1 P A DG 4 ? ? OP1 A DG 4 ? ? 1.381 1.485 -0.104 0.017 N 17 1 P A DG 4 ? ? "O5'" A DG 4 ? ? 1.663 1.593 0.070 0.010 N 18 1 "C4'" A DG 4 ? ? "C3'" A DG 4 ? ? 1.435 1.521 -0.086 0.010 N 19 1 C2 A DG 4 ? ? N3 A DG 4 ? ? 1.259 1.323 -0.064 0.008 N 20 1 N3 A DG 4 ? ? C4 A DG 4 ? ? 1.418 1.350 0.068 0.007 N 21 1 C5 A DG 4 ? ? C6 A DG 4 ? ? 1.351 1.419 -0.068 0.010 N 22 1 C6 A DG 4 ? ? N1 A DG 4 ? ? 1.468 1.391 0.077 0.007 N 23 1 C8 A DG 4 ? ? N9 A DG 4 ? ? 1.421 1.374 0.047 0.007 N 24 1 "C2'" A DC 5 ? ? "C1'" A DC 5 ? ? 1.585 1.519 0.066 0.010 N 25 1 "O4'" A DC 5 ? ? "C4'" A DC 5 ? ? 1.516 1.449 0.067 0.009 N 26 1 "C1'" A DC 5 ? ? N1 A DC 5 ? ? 1.602 1.488 0.114 0.013 N 27 1 C4 A DC 5 ? ? N4 A DC 5 ? ? 1.407 1.335 0.072 0.009 N 28 1 N1 A DC 5 ? ? C2 A DC 5 ? ? 1.324 1.397 -0.073 0.010 N 29 1 C2 A DC 5 ? ? N3 A DC 5 ? ? 1.425 1.353 0.072 0.008 N 30 1 N3 A DC 5 ? ? C4 A DC 5 ? ? 1.385 1.335 0.050 0.007 N 31 1 C4 A DC 5 ? ? C5 A DC 5 ? ? 1.346 1.425 -0.079 0.008 N 32 1 C5 A DC 5 ? ? C6 A DC 5 ? ? 1.410 1.339 0.071 0.008 N 33 1 "O3'" A DC 5 ? ? P A DG 6 ? ? 1.708 1.607 0.101 0.012 Y 34 1 P A DG 6 ? ? OP2 A DG 6 ? ? 1.372 1.485 -0.113 0.017 N 35 1 "C2'" A DG 6 ? ? "C1'" A DG 6 ? ? 1.621 1.519 0.102 0.010 N 36 1 "O4'" A DG 6 ? ? "C4'" A DG 6 ? ? 1.505 1.449 0.056 0.009 N 37 1 N3 A DG 6 ? ? C4 A DG 6 ? ? 1.280 1.350 -0.070 0.007 N 38 1 C6 A DG 6 ? ? N1 A DG 6 ? ? 1.327 1.391 -0.064 0.007 N 39 1 N7 A DG 6 ? ? C8 A DG 6 ? ? 1.378 1.305 0.073 0.006 N 40 1 C2 A DG 6 ? ? N2 A DG 6 ? ? 1.241 1.341 -0.100 0.010 N 41 1 C6 A DG 6 ? ? O6 A DG 6 ? ? 1.302 1.237 0.065 0.009 N 42 1 "C5'" B DC 7 ? ? "C4'" B DC 7 ? ? 1.632 1.512 0.120 0.007 N 43 1 "O4'" B DC 7 ? ? "C4'" B DC 7 ? ? 1.342 1.446 -0.104 0.010 N 44 1 C2 B DC 7 ? ? O2 B DC 7 ? ? 1.297 1.240 0.057 0.009 N 45 1 N1 B DC 7 ? ? C6 B DC 7 ? ? 1.435 1.367 0.068 0.006 N 46 1 N3 B DC 7 ? ? C4 B DC 7 ? ? 1.430 1.335 0.095 0.007 N 47 1 P B DG 8 ? ? OP2 B DG 8 ? ? 1.594 1.485 0.109 0.017 N 48 1 "C2'" B DG 8 ? ? "C1'" B DG 8 ? ? 1.660 1.519 0.141 0.010 N 49 1 "O4'" B DG 8 ? ? "C1'" B DG 8 ? ? 1.321 1.418 -0.097 0.012 N 50 1 "O4'" B DG 8 ? ? "C4'" B DG 8 ? ? 1.509 1.449 0.060 0.009 N 51 1 P B DC 9 ? ? OP2 B DC 9 ? ? 1.380 1.485 -0.105 0.017 N 52 1 C4 B DC 9 ? ? N4 B DC 9 ? ? 1.402 1.335 0.067 0.009 N 53 1 N1 B DC 9 ? ? C2 B DC 9 ? ? 1.278 1.397 -0.119 0.010 N 54 1 C2 B DC 9 ? ? N3 B DC 9 ? ? 1.435 1.353 0.082 0.008 N 55 1 C5 B DC 9 ? ? C6 B DC 9 ? ? 1.391 1.339 0.052 0.008 N 56 1 P B DG 10 ? ? OP1 B DG 10 ? ? 1.323 1.485 -0.162 0.017 N 57 1 "O4'" B DG 10 ? ? "C4'" B DG 10 ? ? 1.526 1.449 0.077 0.009 N 58 1 "O3'" B DG 10 ? ? "C3'" B DG 10 ? ? 1.554 1.435 0.119 0.013 N 59 1 N1 B DG 10 ? ? C2 B DG 10 ? ? 1.438 1.373 0.065 0.008 N 60 1 N3 B DG 10 ? ? C4 B DG 10 ? ? 1.284 1.350 -0.066 0.007 N 61 1 C4 B DG 10 ? ? C5 B DG 10 ? ? 1.429 1.379 0.050 0.007 N 62 1 C6 B DG 10 ? ? N1 B DG 10 ? ? 1.299 1.391 -0.092 0.007 N 63 1 C5 B DG 10 ? ? N7 B DG 10 ? ? 1.327 1.388 -0.061 0.006 N 64 1 N7 B DG 10 ? ? C8 B DG 10 ? ? 1.367 1.305 0.062 0.006 N 65 1 C2 B DG 10 ? ? N2 B DG 10 ? ? 1.237 1.341 -0.104 0.010 N 66 1 "C3'" B DC 11 ? ? "C2'" B DC 11 ? ? 1.635 1.518 0.117 0.012 N 67 1 "O4'" B DC 11 ? ? "C4'" B DC 11 ? ? 1.506 1.449 0.057 0.009 N 68 1 C2 B DC 11 ? ? O2 B DC 11 ? ? 1.177 1.240 -0.063 0.009 N 69 1 N1 B DC 11 ? ? C2 B DC 11 ? ? 1.458 1.397 0.061 0.010 N 70 1 C4 B DC 11 ? ? C5 B DC 11 ? ? 1.478 1.425 0.053 0.008 N 71 1 P B DG 12 ? ? OP1 B DG 12 ? ? 1.362 1.485 -0.123 0.017 N 72 1 P B DG 12 ? ? "O5'" B DG 12 ? ? 1.657 1.593 0.064 0.010 N 73 1 "C5'" B DG 12 ? ? "C4'" B DG 12 ? ? 1.566 1.512 0.054 0.007 N 74 1 "O4'" B DG 12 ? ? "C4'" B DG 12 ? ? 1.379 1.446 -0.067 0.010 N 75 1 "O3'" B DG 12 ? ? "C3'" B DG 12 ? ? 1.544 1.435 0.109 0.013 N 76 1 N1 B DG 12 ? ? C2 B DG 12 ? ? 1.319 1.373 -0.054 0.008 N 77 1 C2 B DG 12 ? ? N3 B DG 12 ? ? 1.418 1.323 0.095 0.008 N 78 1 N3 B DG 12 ? ? C4 B DG 12 ? ? 1.295 1.350 -0.055 0.007 N 79 1 C5 B DG 12 ? ? C6 B DG 12 ? ? 1.495 1.419 0.076 0.010 N 80 1 C6 B DG 12 ? ? N1 B DG 12 ? ? 1.332 1.391 -0.059 0.007 N 81 1 C8 B DG 12 ? ? N9 B DG 12 ? ? 1.321 1.374 -0.053 0.007 N 82 1 N9 B DG 12 ? ? C4 B DG 12 ? ? 1.495 1.375 0.120 0.008 N 83 1 C2 B DG 12 ? ? N2 B DG 12 ? ? 1.253 1.341 -0.088 0.010 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" A DC 1 ? ? "C2'" A DC 1 ? ? "C1'" A DC 1 ? ? 95.48 102.40 -6.92 0.80 N 2 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 100.76 108.00 -7.24 0.70 N 3 1 N1 A DC 1 ? ? C2 A DC 1 ? ? N3 A DC 1 ? ? 112.14 119.20 -7.06 0.70 N 4 1 C2 A DC 1 ? ? N3 A DC 1 ? ? C4 A DC 1 ? ? 130.57 119.90 10.67 0.50 N 5 1 N3 A DC 1 ? ? C4 A DC 1 ? ? C5 A DC 1 ? ? 117.92 121.90 -3.98 0.40 N 6 1 C4 A DC 1 ? ? C5 A DC 1 ? ? C6 A DC 1 ? ? 112.38 117.40 -5.02 0.50 N 7 1 C5 A DC 1 ? ? C6 A DC 1 ? ? N1 A DC 1 ? ? 128.31 121.00 7.31 0.50 N 8 1 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 131.39 121.90 9.49 0.70 N 9 1 N3 A DC 1 ? ? C4 A DC 1 ? ? N4 A DC 1 ? ? 124.01 118.00 6.01 0.70 N 10 1 "C3'" A DG 2 ? ? "C2'" A DG 2 ? ? "C1'" A DG 2 ? ? 95.76 102.40 -6.64 0.80 N 11 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? "C2'" A DG 2 ? ? 114.67 106.80 7.87 0.50 N 12 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 110.40 108.30 2.10 0.30 N 13 1 C2 A DG 2 ? ? N3 A DG 2 ? ? C4 A DG 2 ? ? 106.75 111.90 -5.15 0.50 N 14 1 N3 A DG 2 ? ? C4 A DG 2 ? ? C5 A DG 2 ? ? 134.26 128.60 5.66 0.50 N 15 1 C4 A DG 2 ? ? C5 A DG 2 ? ? C6 A DG 2 ? ? 115.03 118.80 -3.77 0.60 N 16 1 C4 A DG 2 ? ? C5 A DG 2 ? ? N7 A DG 2 ? ? 114.87 110.80 4.07 0.40 N 17 1 C5 A DG 2 ? ? N7 A DG 2 ? ? C8 A DG 2 ? ? 100.00 104.30 -4.30 0.50 N 18 1 N7 A DG 2 ? ? C8 A DG 2 ? ? N9 A DG 2 ? ? 119.55 113.10 6.45 0.50 N 19 1 C8 A DG 2 ? ? N9 A DG 2 ? ? C4 A DG 2 ? ? 100.36 106.40 -6.04 0.40 N 20 1 N3 A DG 2 ? ? C4 A DG 2 ? ? N9 A DG 2 ? ? 121.08 126.00 -4.92 0.60 N 21 1 N3 A DG 2 ? ? C2 A DG 2 ? ? N2 A DG 2 ? ? 114.28 119.90 -5.62 0.70 N 22 1 N1 A DG 2 ? ? C6 A DG 2 ? ? O6 A DG 2 ? ? 123.61 119.90 3.71 0.60 N 23 1 C5 A DG 2 ? ? C6 A DG 2 ? ? O6 A DG 2 ? ? 123.11 128.60 -5.49 0.60 N 24 1 "O5'" A DC 3 ? ? P A DC 3 ? ? OP1 A DC 3 ? ? 99.76 105.70 -5.94 0.90 N 25 1 "O5'" A DC 3 ? ? "C5'" A DC 3 ? ? "C4'" A DC 3 ? ? 104.39 109.40 -5.01 0.80 N 26 1 "O4'" A DC 3 ? ? "C4'" A DC 3 ? ? "C3'" A DC 3 ? ? 109.63 106.00 3.63 0.60 N 27 1 C6 A DC 3 ? ? N1 A DC 3 ? ? C2 A DC 3 ? ? 117.10 120.30 -3.20 0.40 N 28 1 N3 A DC 3 ? ? C4 A DC 3 ? ? C5 A DC 3 ? ? 112.86 121.90 -9.04 0.40 N 29 1 C4 A DC 3 ? ? C5 A DC 3 ? ? C6 A DC 3 ? ? 126.86 117.40 9.46 0.50 N 30 1 N3 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 116.12 121.90 -5.78 0.70 N 31 1 C5 A DC 3 ? ? C4 A DC 3 ? ? N4 A DC 3 ? ? 128.21 120.20 8.01 0.70 N 32 1 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 102.30 108.00 -5.70 0.70 N 33 1 C6 A DG 4 ? ? N1 A DG 4 ? ? C2 A DG 4 ? ? 114.99 125.10 -10.11 0.60 N 34 1 N1 A DG 4 ? ? C2 A DG 4 ? ? N3 A DG 4 ? ? 130.07 123.90 6.17 0.60 N 35 1 N3 A DG 4 ? ? C4 A DG 4 ? ? C5 A DG 4 ? ? 124.19 128.60 -4.41 0.50 N 36 1 C5 A DG 4 ? ? C6 A DG 4 ? ? N1 A DG 4 ? ? 116.18 111.50 4.68 0.50 N 37 1 C4 A DG 4 ? ? C5 A DG 4 ? ? N7 A DG 4 ? ? 106.72 110.80 -4.08 0.40 N 38 1 C5 A DG 4 ? ? N7 A DG 4 ? ? C8 A DG 4 ? ? 108.07 104.30 3.77 0.50 N 39 1 N9 A DG 4 ? ? C4 A DG 4 ? ? C5 A DG 4 ? ? 109.80 105.40 4.40 0.40 N 40 1 N1 A DG 4 ? ? C6 A DG 4 ? ? O6 A DG 4 ? ? 110.10 119.90 -9.80 0.60 N 41 1 C5 A DG 4 ? ? C6 A DG 4 ? ? O6 A DG 4 ? ? 133.69 128.60 5.09 0.60 N 42 1 "O3'" A DG 4 ? ? P A DC 5 ? ? OP1 A DC 5 ? ? 117.56 110.50 7.06 1.10 Y 43 1 "O4'" A DC 5 ? ? "C4'" A DC 5 ? ? "C3'" A DC 5 ? ? 102.10 104.50 -2.40 0.40 N 44 1 "C4'" A DC 5 ? ? "C3'" A DC 5 ? ? "C2'" A DC 5 ? ? 110.61 103.10 7.51 0.90 N 45 1 "C3'" A DC 5 ? ? "C2'" A DC 5 ? ? "C1'" A DC 5 ? ? 93.11 102.40 -9.29 0.80 N 46 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 100.98 108.00 -7.02 0.70 N 47 1 C6 A DC 5 ? ? N1 A DC 5 ? ? C2 A DC 5 ? ? 127.74 120.30 7.44 0.40 N 48 1 N1 A DC 5 ? ? C2 A DC 5 ? ? N3 A DC 5 ? ? 114.75 119.20 -4.45 0.70 N 49 1 N3 A DC 5 ? ? C4 A DC 5 ? ? C5 A DC 5 ? ? 125.22 121.90 3.32 0.40 N 50 1 C5 A DC 5 ? ? C6 A DC 5 ? ? N1 A DC 5 ? ? 116.87 121.00 -4.13 0.50 N 51 1 N1 A DC 5 ? ? C2 A DC 5 ? ? O2 A DC 5 ? ? 130.41 118.90 11.51 0.60 N 52 1 N3 A DC 5 ? ? C2 A DC 5 ? ? O2 A DC 5 ? ? 114.84 121.90 -7.06 0.70 N 53 1 N3 A DC 5 ? ? C4 A DC 5 ? ? N4 A DC 5 ? ? 112.65 118.00 -5.35 0.70 N 54 1 "O3'" A DC 5 ? ? P A DG 6 ? ? OP2 A DG 6 ? ? 89.70 105.20 -15.50 2.20 Y 55 1 OP1 A DG 6 ? ? P A DG 6 ? ? OP2 A DG 6 ? ? 133.55 119.60 13.95 1.50 N 56 1 "C4'" A DG 6 ? ? "C3'" A DG 6 ? ? "C2'" A DG 6 ? ? 109.98 103.10 6.88 0.90 N 57 1 "C3'" A DG 6 ? ? "C2'" A DG 6 ? ? "C1'" A DG 6 ? ? 94.83 102.40 -7.57 0.80 N 58 1 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? "C2'" A DG 6 ? ? 112.02 106.80 5.22 0.50 N 59 1 N1 A DG 6 ? ? C2 A DG 6 ? ? N3 A DG 6 ? ? 119.10 123.90 -4.80 0.60 N 60 1 C2 A DG 6 ? ? N3 A DG 6 ? ? C4 A DG 6 ? ? 118.87 111.90 6.97 0.50 N 61 1 N3 A DG 6 ? ? C4 A DG 6 ? ? C5 A DG 6 ? ? 124.31 128.60 -4.29 0.50 N 62 1 C5 A DG 6 ? ? C6 A DG 6 ? ? N1 A DG 6 ? ? 116.60 111.50 5.10 0.50 N 63 1 N7 A DG 6 ? ? C8 A DG 6 ? ? N9 A DG 6 ? ? 106.94 113.10 -6.16 0.50 N 64 1 C8 A DG 6 ? ? N9 A DG 6 ? ? C4 A DG 6 ? ? 113.12 106.40 6.72 0.40 N 65 1 N9 A DG 6 ? ? C4 A DG 6 ? ? C5 A DG 6 ? ? 102.24 105.40 -3.16 0.40 N 66 1 N3 A DG 6 ? ? C4 A DG 6 ? ? N9 A DG 6 ? ? 133.33 126.00 7.33 0.60 N 67 1 N1 A DG 6 ? ? C2 A DG 6 ? ? N2 A DG 6 ? ? 122.12 116.20 5.92 0.90 N 68 1 C5 A DG 6 ? ? C6 A DG 6 ? ? O6 A DG 6 ? ? 123.85 128.60 -4.75 0.60 N 69 1 C6 B DC 7 ? ? N1 B DC 7 ? ? C2 B DC 7 ? ? 116.86 120.30 -3.44 0.40 N 70 1 N3 B DC 7 ? ? C4 B DC 7 ? ? C5 B DC 7 ? ? 115.69 121.90 -6.21 0.40 N 71 1 C4 B DC 7 ? ? C5 B DC 7 ? ? C6 B DC 7 ? ? 120.59 117.40 3.19 0.50 N 72 1 C5 B DC 7 ? ? C4 B DC 7 ? ? N4 B DC 7 ? ? 128.34 120.20 8.14 0.70 N 73 1 "O4'" B DG 8 ? ? "C4'" B DG 8 ? ? "C3'" B DG 8 ? ? 99.53 104.50 -4.97 0.40 N 74 1 "C4'" B DG 8 ? ? "C3'" B DG 8 ? ? "C2'" B DG 8 ? ? 114.04 103.10 10.94 0.90 N 75 1 "C3'" B DG 8 ? ? "C2'" B DG 8 ? ? "C1'" B DG 8 ? ? 94.45 102.40 -7.95 0.80 N 76 1 "O4'" B DG 8 ? ? "C1'" B DG 8 ? ? "C2'" B DG 8 ? ? 112.90 106.80 6.10 0.50 N 77 1 "O4'" B DG 8 ? ? "C1'" B DG 8 ? ? N9 B DG 8 ? ? 111.69 108.30 3.39 0.30 N 78 1 C6 B DG 8 ? ? N1 B DG 8 ? ? C2 B DG 8 ? ? 116.91 125.10 -8.19 0.60 N 79 1 N1 B DG 8 ? ? C2 B DG 8 ? ? N3 B DG 8 ? ? 131.56 123.90 7.66 0.60 N 80 1 N3 B DG 8 ? ? C4 B DG 8 ? ? C5 B DG 8 ? ? 124.71 128.60 -3.89 0.50 N 81 1 C5 B DG 8 ? ? C6 B DG 8 ? ? N1 B DG 8 ? ? 114.82 111.50 3.32 0.50 N 82 1 C4 B DG 8 ? ? C5 B DG 8 ? ? N7 B DG 8 ? ? 108.25 110.80 -2.55 0.40 N 83 1 C8 B DG 8 ? ? N9 B DG 8 ? ? C4 B DG 8 ? ? 102.77 106.40 -3.63 0.40 N 84 1 N9 B DG 8 ? ? C4 B DG 8 ? ? C5 B DG 8 ? ? 109.73 105.40 4.33 0.40 N 85 1 N3 B DG 8 ? ? C2 B DG 8 ? ? N2 B DG 8 ? ? 115.23 119.90 -4.67 0.70 N 86 1 "C3'" B DG 8 ? ? "O3'" B DG 8 ? ? P B DC 9 ? ? 127.05 119.70 7.35 1.20 Y 87 1 "O3'" B DG 8 ? ? P B DC 9 ? ? OP2 B DC 9 ? ? 89.17 105.20 -16.03 2.20 Y 88 1 OP1 B DC 9 ? ? P B DC 9 ? ? OP2 B DC 9 ? ? 133.72 119.60 14.12 1.50 N 89 1 "O5'" B DC 9 ? ? P B DC 9 ? ? OP1 B DC 9 ? ? 122.38 110.70 11.68 1.20 N 90 1 "O5'" B DC 9 ? ? P B DC 9 ? ? OP2 B DC 9 ? ? 86.09 105.70 -19.61 0.90 N 91 1 C6 B DC 9 ? ? N1 B DC 9 ? ? C2 B DC 9 ? ? 127.82 120.30 7.52 0.40 N 92 1 C2 B DC 9 ? ? N3 B DC 9 ? ? C4 B DC 9 ? ? 116.22 119.90 -3.68 0.50 N 93 1 N3 B DC 9 ? ? C4 B DC 9 ? ? C5 B DC 9 ? ? 125.28 121.90 3.38 0.40 N 94 1 C5 B DC 9 ? ? C6 B DC 9 ? ? N1 B DC 9 ? ? 117.05 121.00 -3.95 0.50 N 95 1 N1 B DC 9 ? ? C2 B DC 9 ? ? O2 B DC 9 ? ? 127.26 118.90 8.36 0.60 N 96 1 N3 B DC 9 ? ? C2 B DC 9 ? ? O2 B DC 9 ? ? 115.00 121.90 -6.90 0.70 N 97 1 N3 B DC 9 ? ? C4 B DC 9 ? ? N4 B DC 9 ? ? 111.26 118.00 -6.74 0.70 N 98 1 C4 B DG 10 ? ? C5 B DG 10 ? ? C6 B DG 10 ? ? 112.42 118.80 -6.38 0.60 N 99 1 C5 B DG 10 ? ? C6 B DG 10 ? ? N1 B DG 10 ? ? 118.79 111.50 7.29 0.50 N 100 1 N7 B DG 10 ? ? C8 B DG 10 ? ? N9 B DG 10 ? ? 109.01 113.10 -4.09 0.50 N 101 1 C8 B DG 10 ? ? N9 B DG 10 ? ? C4 B DG 10 ? ? 111.22 106.40 4.82 0.40 N 102 1 N9 B DG 10 ? ? C4 B DG 10 ? ? C5 B DG 10 ? ? 101.71 105.40 -3.69 0.40 N 103 1 C6 B DG 10 ? ? C5 B DG 10 ? ? N7 B DG 10 ? ? 135.94 130.40 5.54 0.60 N 104 1 C5 B DG 10 ? ? C6 B DG 10 ? ? O6 B DG 10 ? ? 119.49 128.60 -9.11 0.60 N 105 1 C8 B DG 10 ? ? N9 B DG 10 ? ? "C1'" B DG 10 ? ? 117.70 127.00 -9.30 1.30 N 106 1 "C3'" B DC 11 ? ? "C2'" B DC 11 ? ? "C1'" B DC 11 ? ? 95.19 102.40 -7.21 0.80 N 107 1 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? "C2'" B DC 11 ? ? 111.11 106.80 4.31 0.50 N 108 1 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? N1 B DC 11 ? ? 102.02 108.00 -5.98 0.70 N 109 1 N1 B DC 11 ? ? C2 B DC 11 ? ? N3 B DC 11 ? ? 111.80 119.20 -7.40 0.70 N 110 1 C2 B DC 11 ? ? N3 B DC 11 ? ? C4 B DC 11 ? ? 127.91 119.90 8.01 0.50 N 111 1 N3 B DC 11 ? ? C4 B DC 11 ? ? C5 B DC 11 ? ? 117.77 121.90 -4.13 0.40 N 112 1 N3 B DC 11 ? ? C2 B DC 11 ? ? O2 B DC 11 ? ? 126.32 121.90 4.42 0.70 N 113 1 N3 B DC 11 ? ? C4 B DC 11 ? ? N4 B DC 11 ? ? 126.18 118.00 8.18 0.70 N 114 1 C5 B DC 11 ? ? C4 B DC 11 ? ? N4 B DC 11 ? ? 115.45 120.20 -4.75 0.70 N 115 1 "O5'" B DG 12 ? ? "C5'" B DG 12 ? ? "C4'" B DG 12 ? ? 103.04 109.40 -6.36 0.80 N 116 1 "C5'" B DG 12 ? ? "C4'" B DG 12 ? ? "O4'" B DG 12 ? ? 117.56 109.80 7.76 1.10 N 117 1 C6 B DG 12 ? ? N1 B DG 12 ? ? C2 B DG 12 ? ? 129.29 125.10 4.19 0.60 N 118 1 N3 B DG 12 ? ? C4 B DG 12 ? ? C5 B DG 12 ? ? 135.76 128.60 7.16 0.50 N 119 1 C4 B DG 12 ? ? C5 B DG 12 ? ? C6 B DG 12 ? ? 111.19 118.80 -7.61 0.60 N 120 1 C4 B DG 12 ? ? C5 B DG 12 ? ? N7 B DG 12 ? ? 116.67 110.80 5.87 0.40 N 121 1 C5 B DG 12 ? ? N7 B DG 12 ? ? C8 B DG 12 ? ? 98.47 104.30 -5.83 0.50 N 122 1 N7 B DG 12 ? ? C8 B DG 12 ? ? N9 B DG 12 ? ? 120.71 113.10 7.61 0.50 N 123 1 N9 B DG 12 ? ? C4 B DG 12 ? ? C5 B DG 12 ? ? 99.05 105.40 -6.35 0.40 N 124 1 N1 B DG 12 ? ? C2 B DG 12 ? ? N2 B DG 12 ? ? 124.30 116.20 8.10 0.90 N 125 1 N3 B DG 12 ? ? C2 B DG 12 ? ? N2 B DG 12 ? ? 114.63 119.90 -5.27 0.70 N 126 1 N1 B DG 12 ? ? C6 B DG 12 ? ? O6 B DG 12 ? ? 125.95 119.90 6.05 0.60 N 127 1 C5 B DG 12 ? ? C6 B DG 12 ? ? O6 B DG 12 ? ? 120.62 128.60 -7.98 0.60 N # loop_ _refine_B_iso.class _refine_B_iso.details _refine_B_iso.treatment _refine_B_iso.pdbx_refine_id 'ALL ATOMS' TR isotropic 'X-RAY DIFFRACTION' 'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION' 'ALL IONS' TR isotropic 'X-RAY DIFFRACTION' # loop_ _refine_occupancy.class _refine_occupancy.treatment _refine_occupancy.pdbx_refine_id 'ALL ATOMS' fix 'X-RAY DIFFRACTION' 'ALL WATERS' fix 'X-RAY DIFFRACTION' 'ALL IONS' fix 'X-RAY DIFFRACTION' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DC OP3 O N N 1 DC P P N N 2 DC OP1 O N N 3 DC OP2 O N N 4 DC "O5'" O N N 5 DC "C5'" C N N 6 DC "C4'" C N R 7 DC "O4'" O N N 8 DC "C3'" C N S 9 DC "O3'" O N N 10 DC "C2'" C N N 11 DC "C1'" C N R 12 DC N1 N N N 13 DC C2 C N N 14 DC O2 O N N 15 DC N3 N N N 16 DC C4 C N N 17 DC N4 N N N 18 DC C5 C N N 19 DC C6 C N N 20 DC HOP3 H N N 21 DC HOP2 H N N 22 DC "H5'" H N N 23 DC "H5''" H N N 24 DC "H4'" H N N 25 DC "H3'" H N N 26 DC "HO3'" H N N 27 DC "H2'" H N N 28 DC "H2''" H N N 29 DC "H1'" H N N 30 DC H41 H N N 31 DC H42 H N N 32 DC H5 H N N 33 DC H6 H N N 34 DG OP3 O N N 35 DG P P N N 36 DG OP1 O N N 37 DG OP2 O N N 38 DG "O5'" O N N 39 DG "C5'" C N N 40 DG "C4'" C N R 41 DG "O4'" O N N 42 DG "C3'" C N S 43 DG "O3'" O N N 44 DG "C2'" C N N 45 DG "C1'" C N R 46 DG N9 N Y N 47 DG C8 C Y N 48 DG N7 N Y N 49 DG C5 C Y N 50 DG C6 C N N 51 DG O6 O N N 52 DG N1 N N N 53 DG C2 C N N 54 DG N2 N N N 55 DG N3 N N N 56 DG C4 C Y N 57 DG HOP3 H N N 58 DG HOP2 H N N 59 DG "H5'" H N N 60 DG "H5''" H N N 61 DG "H4'" H N N 62 DG "H3'" H N N 63 DG "HO3'" H N N 64 DG "H2'" H N N 65 DG "H2''" H N N 66 DG "H1'" H N N 67 DG H8 H N N 68 DG H1 H N N 69 DG H21 H N N 70 DG H22 H N N 71 HOH O O N N 72 HOH H1 H N N 73 HOH H2 H N N 74 MG MG MG N N 75 NA NA NA N N 76 SPD N1 N N N 77 SPD C2 C N N 78 SPD C3 C N N 79 SPD C4 C N N 80 SPD C5 C N N 81 SPD N6 N N N 82 SPD C7 C N N 83 SPD C8 C N N 84 SPD C9 C N N 85 SPD N10 N N N 86 SPD HN11 H N N 87 SPD HN12 H N N 88 SPD H21 H N N 89 SPD H22 H N N 90 SPD H31 H N N 91 SPD H32 H N N 92 SPD H41 H N N 93 SPD H42 H N N 94 SPD H51 H N N 95 SPD H52 H N N 96 SPD HN6 H N N 97 SPD H71 H N N 98 SPD H72 H N N 99 SPD H81 H N N 100 SPD H82 H N N 101 SPD H91 H N N 102 SPD H92 H N N 103 SPD H101 H N N 104 SPD H102 H N N 105 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DC OP3 P sing N N 1 DC OP3 HOP3 sing N N 2 DC P OP1 doub N N 3 DC P OP2 sing N N 4 DC P "O5'" sing N N 5 DC OP2 HOP2 sing N N 6 DC "O5'" "C5'" sing N N 7 DC "C5'" "C4'" sing N N 8 DC "C5'" "H5'" sing N N 9 DC "C5'" "H5''" sing N N 10 DC "C4'" "O4'" sing N N 11 DC "C4'" "C3'" sing N N 12 DC "C4'" "H4'" sing N N 13 DC "O4'" "C1'" sing N N 14 DC "C3'" "O3'" sing N N 15 DC "C3'" "C2'" sing N N 16 DC "C3'" "H3'" sing N N 17 DC "O3'" "HO3'" sing N N 18 DC "C2'" "C1'" sing N N 19 DC "C2'" "H2'" sing N N 20 DC "C2'" "H2''" sing N N 21 DC "C1'" N1 sing N N 22 DC "C1'" "H1'" sing N N 23 DC N1 C2 sing N N 24 DC N1 C6 sing N N 25 DC C2 O2 doub N N 26 DC C2 N3 sing N N 27 DC N3 C4 doub N N 28 DC C4 N4 sing N N 29 DC C4 C5 sing N N 30 DC N4 H41 sing N N 31 DC N4 H42 sing N N 32 DC C5 C6 doub N N 33 DC C5 H5 sing N N 34 DC C6 H6 sing N N 35 DG OP3 P sing N N 36 DG OP3 HOP3 sing N N 37 DG P OP1 doub N N 38 DG P OP2 sing N N 39 DG P "O5'" sing N N 40 DG OP2 HOP2 sing N N 41 DG "O5'" "C5'" sing N N 42 DG "C5'" "C4'" sing N N 43 DG "C5'" "H5'" sing N N 44 DG "C5'" "H5''" sing N N 45 DG "C4'" "O4'" sing N N 46 DG "C4'" "C3'" sing N N 47 DG "C4'" "H4'" sing N N 48 DG "O4'" "C1'" sing N N 49 DG "C3'" "O3'" sing N N 50 DG "C3'" "C2'" sing N N 51 DG "C3'" "H3'" sing N N 52 DG "O3'" "HO3'" sing N N 53 DG "C2'" "C1'" sing N N 54 DG "C2'" "H2'" sing N N 55 DG "C2'" "H2''" sing N N 56 DG "C1'" N9 sing N N 57 DG "C1'" "H1'" sing N N 58 DG N9 C8 sing Y N 59 DG N9 C4 sing Y N 60 DG C8 N7 doub Y N 61 DG C8 H8 sing N N 62 DG N7 C5 sing Y N 63 DG C5 C6 sing N N 64 DG C5 C4 doub Y N 65 DG C6 O6 doub N N 66 DG C6 N1 sing N N 67 DG N1 C2 sing N N 68 DG N1 H1 sing N N 69 DG C2 N2 sing N N 70 DG C2 N3 doub N N 71 DG N2 H21 sing N N 72 DG N2 H22 sing N N 73 DG N3 C4 sing N N 74 HOH O H1 sing N N 75 HOH O H2 sing N N 76 SPD N1 C2 sing N N 77 SPD N1 HN11 sing N N 78 SPD N1 HN12 sing N N 79 SPD C2 C3 sing N N 80 SPD C2 H21 sing N N 81 SPD C2 H22 sing N N 82 SPD C3 C4 sing N N 83 SPD C3 H31 sing N N 84 SPD C3 H32 sing N N 85 SPD C4 C5 sing N N 86 SPD C4 H41 sing N N 87 SPD C4 H42 sing N N 88 SPD C5 N6 sing N N 89 SPD C5 H51 sing N N 90 SPD C5 H52 sing N N 91 SPD N6 C7 sing N N 92 SPD N6 HN6 sing N N 93 SPD C7 C8 sing N N 94 SPD C7 H71 sing N N 95 SPD C7 H72 sing N N 96 SPD C8 C9 sing N N 97 SPD C8 H81 sing N N 98 SPD C8 H82 sing N N 99 SPD C9 N10 sing N N 100 SPD C9 H91 sing N N 101 SPD C9 H92 sing N N 102 SPD N10 H101 sing N N 103 SPD N10 H102 sing N N 104 # _ndb_struct_conf_na.entry_id 293D _ndb_struct_conf_na.feature 'z-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 6 1_555 -0.250 -0.175 0.151 -0.130 -0.186 0.251 1 A_DC1:DG12_B A 1 ? B 12 ? 19 1 1 A DG 2 1_555 B DC 5 1_555 0.170 -0.196 -0.093 -5.471 -2.733 2.913 2 A_DG2:DC11_B A 2 ? B 11 ? 19 1 1 A DC 3 1_555 B DG 4 1_555 -0.245 -0.149 0.006 6.639 -2.783 1.472 3 A_DC3:DG10_B A 3 ? B 10 ? 19 1 1 A DG 4 1_555 B DC 3 1_555 0.168 -0.048 0.120 -6.247 -1.434 1.114 4 A_DG4:DC9_B A 4 ? B 9 ? 19 1 1 A DC 5 1_555 B DG 2 1_555 -0.128 -0.095 -0.052 4.176 -0.128 2.369 5 A_DC5:DG8_B A 5 ? B 8 ? 19 1 1 A DG 6 1_555 B DC 1 1_555 0.227 -0.102 0.069 -0.075 4.334 2.402 6 A_DG6:DC7_B A 6 ? B 7 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 6 1_555 A DG 2 1_555 B DC 5 1_555 0.015 5.327 3.564 1.036 -3.087 -6.609 -26.018 5.298 5.426 24.886 8.355 -7.367 1 AA_DC1DG2:DC11DG12_BB A 1 ? B 12 ? A 2 ? B 11 ? 1 A DG 2 1_555 B DC 5 1_555 A DC 3 1_555 B DG 4 1_555 -0.081 -1.007 3.241 -0.250 -5.622 -51.008 1.540 -0.110 3.120 6.506 -0.289 -51.297 2 AA_DG2DC3:DG10DC11_BB A 2 ? B 11 ? A 3 ? B 10 ? 1 A DC 3 1_555 B DG 4 1_555 A DG 4 1_555 B DC 3 1_555 -0.021 5.419 3.843 -0.369 -3.392 -6.671 -23.692 -2.096 5.872 26.947 -2.930 -7.492 3 AA_DC3DG4:DC9DG10_BB A 3 ? B 10 ? A 4 ? B 9 ? 1 A DG 4 1_555 B DC 3 1_555 A DC 5 1_555 B DG 2 1_555 0.014 -0.769 3.230 1.192 -3.284 -52.002 1.090 0.094 3.178 3.741 1.358 -52.111 4 AA_DG4DC5:DG8DC9_BB A 4 ? B 9 ? A 5 ? B 8 ? 1 A DC 5 1_555 B DG 2 1_555 A DG 6 1_555 B DC 1 1_555 0.094 5.349 3.547 -0.184 -1.066 -9.985 -28.237 0.138 4.094 6.099 -1.053 -10.043 5 AA_DC5DG6:DC7DG8_BB A 5 ? B 8 ? A 6 ? B 7 ? # _pdbx_initial_refinement_model.accession_code 2DCG _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.details ZDF001 # _atom_sites.entry_id 293D _atom_sites.fract_transf_matrix[1][1] 0.055772 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.032020 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022401 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N NA O P # loop_