data_297D # _entry.id 297D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 297D pdb_0000297d 10.2210/pdb297d/pdb RCSB BDLB82 ? ? WWPDB D_1000177710 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1997-02-19 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 297D _pdbx_database_status.recvd_initial_deposition_date 1996-11-19 _pdbx_database_status.deposit_site NDB _pdbx_database_status.process_site NDB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Arbuckle, N.D.' 1 'Luisi, B.F.' 2 # _citation.id primary _citation.title 'X-ray and solution studies of DNA oligomers and implications for the structural basis of A-tract-dependent curvature.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 267 _citation.page_first 595 _citation.page_last 623 _citation.year 1997 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 9126841 _citation.pdbx_database_id_DOI 10.1006/jmbi.1996.0878 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Shatzky-Schwartz, M.' 1 ? primary 'Arbuckle, N.D.' 2 ? primary 'Eisenstein, M.' 3 ? primary 'Rabinovich, D.' 4 ? primary 'Bareket-Samish, A.' 5 ? primary 'Haran, T.E.' 6 ? primary 'Luisi, B.F.' 7 ? primary 'Shakked, Z.' 8 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*GP*CP*AP*IP*AP*TP*(5CM)P*TP*GP*CP*G)-3') ; 3662.405 2 ? ? ? ? 2 water nat water 18.015 93 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DC)(DA)(DI)(DA)(DT)(5CM)(DT)(DG)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGCAIATCTGCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DC n 1 4 DA n 1 5 DI n 1 6 DA n 1 7 DT n 1 8 5CM n 1 9 DT n 1 10 DG n 1 11 DC n 1 12 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5CM 'DNA linking' n "5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE" ? 'C10 H16 N3 O7 P' 321.224 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DI 'DNA linking' y "2'-DEOXYINOSINE-5'-MONOPHOSPHATE" ? 'C10 H13 N4 O7 P' 332.207 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DA 4 4 4 DA A A . n A 1 5 DI 5 5 5 DI I A . n A 1 6 DA 6 6 6 DA A A . n A 1 7 DT 7 7 7 DT T A . n A 1 8 5CM 8 8 8 5CM +C A . n A 1 9 DT 9 9 9 DT T A . n A 1 10 DG 10 10 10 DG G A . n A 1 11 DC 11 11 11 DC C A . n A 1 12 DG 12 12 12 DG G A . n B 1 1 DC 1 13 13 DC C B . n B 1 2 DG 2 14 14 DG G B . n B 1 3 DC 3 15 15 DC C B . n B 1 4 DA 4 16 16 DA A B . n B 1 5 DI 5 17 17 DI I B . n B 1 6 DA 6 18 18 DA A B . n B 1 7 DT 7 19 19 DT T B . n B 1 8 5CM 8 20 20 5CM +C B . n B 1 9 DT 9 21 21 DT T B . n B 1 10 DG 10 22 22 DG G B . n B 1 11 DC 11 23 23 DC C B . n B 1 12 DG 12 24 24 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 26 26 HOH HOH A . C 2 HOH 2 31 31 HOH HOH A . C 2 HOH 3 33 33 HOH HOH A . C 2 HOH 4 34 34 HOH HOH A . C 2 HOH 5 36 36 HOH HOH A . C 2 HOH 6 38 38 HOH HOH A . C 2 HOH 7 40 40 HOH HOH A . C 2 HOH 8 45 45 HOH HOH A . C 2 HOH 9 50 50 HOH HOH A . C 2 HOH 10 52 52 HOH HOH A . C 2 HOH 11 58 58 HOH HOH A . C 2 HOH 12 59 59 HOH HOH A . C 2 HOH 13 61 61 HOH HOH A . C 2 HOH 14 64 64 HOH HOH A . C 2 HOH 15 65 65 HOH HOH A . C 2 HOH 16 66 66 HOH HOH A . C 2 HOH 17 68 68 HOH HOH A . C 2 HOH 18 69 69 HOH HOH A . C 2 HOH 19 70 70 HOH HOH A . C 2 HOH 20 72 72 HOH HOH A . C 2 HOH 21 74 74 HOH HOH A . C 2 HOH 22 75 75 HOH HOH A . C 2 HOH 23 76 76 HOH HOH A . C 2 HOH 24 77 77 HOH HOH A . C 2 HOH 25 79 79 HOH HOH A . C 2 HOH 26 81 81 HOH HOH A . C 2 HOH 27 86 86 HOH HOH A . C 2 HOH 28 89 89 HOH HOH A . C 2 HOH 29 96 96 HOH HOH A . C 2 HOH 30 97 97 HOH HOH A . C 2 HOH 31 100 100 HOH HOH A . C 2 HOH 32 106 106 HOH HOH A . C 2 HOH 33 107 107 HOH HOH A . C 2 HOH 34 108 108 HOH HOH A . C 2 HOH 35 109 109 HOH HOH A . C 2 HOH 36 110 110 HOH HOH A . C 2 HOH 37 111 111 HOH HOH A . C 2 HOH 38 112 112 HOH HOH A . C 2 HOH 39 113 113 HOH HOH A . C 2 HOH 40 114 114 HOH HOH A . C 2 HOH 41 115 115 HOH HOH A . C 2 HOH 42 117 117 HOH HOH A . D 2 HOH 1 25 25 HOH HOH B . D 2 HOH 2 27 27 HOH HOH B . D 2 HOH 3 28 28 HOH HOH B . D 2 HOH 4 29 29 HOH HOH B . D 2 HOH 5 30 30 HOH HOH B . D 2 HOH 6 32 32 HOH HOH B . D 2 HOH 7 35 35 HOH HOH B . D 2 HOH 8 37 37 HOH HOH B . D 2 HOH 9 39 39 HOH HOH B . D 2 HOH 10 41 41 HOH HOH B . D 2 HOH 11 42 42 HOH HOH B . D 2 HOH 12 43 43 HOH HOH B . D 2 HOH 13 44 44 HOH HOH B . D 2 HOH 14 46 46 HOH HOH B . D 2 HOH 15 47 47 HOH HOH B . D 2 HOH 16 48 48 HOH HOH B . D 2 HOH 17 49 49 HOH HOH B . D 2 HOH 18 51 51 HOH HOH B . D 2 HOH 19 53 53 HOH HOH B . D 2 HOH 20 54 54 HOH HOH B . D 2 HOH 21 55 55 HOH HOH B . D 2 HOH 22 56 56 HOH HOH B . D 2 HOH 23 57 57 HOH HOH B . D 2 HOH 24 60 60 HOH HOH B . D 2 HOH 25 62 62 HOH HOH B . D 2 HOH 26 63 63 HOH HOH B . D 2 HOH 27 67 67 HOH HOH B . D 2 HOH 28 71 71 HOH HOH B . D 2 HOH 29 73 73 HOH HOH B . D 2 HOH 30 78 78 HOH HOH B . D 2 HOH 31 80 80 HOH HOH B . D 2 HOH 32 82 82 HOH HOH B . D 2 HOH 33 83 83 HOH HOH B . D 2 HOH 34 84 84 HOH HOH B . D 2 HOH 35 85 85 HOH HOH B . D 2 HOH 36 87 87 HOH HOH B . D 2 HOH 37 88 88 HOH HOH B . D 2 HOH 38 90 90 HOH HOH B . D 2 HOH 39 91 91 HOH HOH B . D 2 HOH 40 92 92 HOH HOH B . D 2 HOH 41 93 93 HOH HOH B . D 2 HOH 42 94 94 HOH HOH B . D 2 HOH 43 95 95 HOH HOH B . D 2 HOH 44 98 98 HOH HOH B . D 2 HOH 45 99 99 HOH HOH B . D 2 HOH 46 101 101 HOH HOH B . D 2 HOH 47 102 102 HOH HOH B . D 2 HOH 48 103 103 HOH HOH B . D 2 HOH 49 104 104 HOH HOH B . D 2 HOH 50 105 105 HOH HOH B . D 2 HOH 51 116 116 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal NUCLSQ refinement . ? 1 DENZO 'data reduction' . ? 2 # _cell.entry_id 297D _cell.length_a 24.943 _cell.length_b 40.544 _cell.length_c 65.003 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 297D _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # _exptl.entry_id 297D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.24 _exptl_crystal.density_percent_sol 45.18 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277.00 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.00 _exptl_crystal_grow.pdbx_details 'pH 7.00, VAPOR DIFFUSION, HANGING DROP, temperature 277.00K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 MPD ? ? ? 1 3 1 MGCL2 ? ? ? 1 4 1 SPERMINE_HCL ? ? ? 1 5 1 'NA CACODYLATE' ? ? ? 1 6 2 WATER ? ? ? 1 7 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1995-07-25 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SRS BEAMLINE PX9.6' _diffrn_source.pdbx_synchrotron_site SRS _diffrn_source.pdbx_synchrotron_beamline PX9.6 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 297D _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low ? _reflns.d_resolution_high 2.500 _reflns.number_obs 2427 _reflns.number_all ? _reflns.percent_possible_obs 96.800 _reflns.pdbx_Rmerge_I_obs 0.062 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 5.700 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 297D _refine.ls_number_reflns_obs 2298 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 8.000 _refine.ls_d_res_high 2.500 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.221 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free 0.216 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 14.60 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 484 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 93 _refine_hist.number_atoms_total 579 _refine_hist.d_res_high 2.500 _refine_hist.d_res_low 8.000 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function n_bond_d 0.008 0.020 ? ? 'X-RAY DIFFRACTION' ? n_angle_d 0.048 0.050 ? ? 'X-RAY DIFFRACTION' ? n_planar_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_hb_or_metal_coord ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_angle_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_phos_angle_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_bond_angle_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_dihedral_angle_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_impr_tor ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_plane_restr 0.015 0.030 ? ? 'X-RAY DIFFRACTION' ? n_chiral_restr ? 0.100 ? ? 'X-RAY DIFFRACTION' ? n_singtor_nbd ? 0.200 ? ? 'X-RAY DIFFRACTION' ? n_multtor_nbd ? 0.200 ? ? 'X-RAY DIFFRACTION' ? n_xhyhbond_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 297D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 297D _struct.title 'X-RAY AND SOLUTION STUDIES OF DNA OLIGOMERS AND IMPLICATIONS FOR THE STRUCTURAL BASIS OF A-TRACT-DEPENDENT CURVATURE' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 297D _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'B-DNA, DOUBLE HELIX, MODIFIED, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 297D _struct_ref.pdbx_db_accession 297D _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 297D A 1 ? 12 ? 297D 1 ? 12 ? 1 12 2 1 297D B 1 ? 12 ? 297D 13 ? 24 ? 13 24 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DT 7 "O3'" ? ? ? 1_555 A 5CM 8 P ? ? A DT 7 A 5CM 8 1_555 ? ? ? ? ? ? ? 1.692 ? ? covale2 covale both ? A 5CM 8 "O3'" ? ? ? 1_555 A DT 9 P ? ? A 5CM 8 A DT 9 1_555 ? ? ? ? ? ? ? 1.676 ? ? covale3 covale both ? B DT 7 "O3'" ? ? ? 1_555 B 5CM 8 P ? ? B DT 19 B 5CM 20 1_555 ? ? ? ? ? ? ? 1.703 ? ? covale4 covale both ? B 5CM 8 "O3'" ? ? ? 1_555 B DT 9 P ? ? B 5CM 20 B DT 21 1_555 ? ? ? ? ? ? ? 1.684 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 12 N1 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 12 O6 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 12 N2 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 11 N3 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 11 O2 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 11 N4 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DT 9 N3 ? ? A DA 4 B DT 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DT 9 O4 ? ? A DA 4 B DT 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 7 N3 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 7 O4 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? hydrog15 hydrog ? ? A DT 9 N3 ? ? ? 1_555 B DA 4 N1 ? ? A DT 9 B DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DT 9 O4 ? ? ? 1_555 B DA 4 N6 ? ? A DT 9 B DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 P A DG 2 ? ? OP2 A DG 2 ? ? 1.594 1.485 0.109 0.017 N 2 1 "O3'" A DG 2 ? ? P A DC 3 ? ? 1.682 1.607 0.075 0.012 Y 3 1 P A DC 3 ? ? OP2 A DC 3 ? ? 1.591 1.485 0.106 0.017 N 4 1 P A DA 4 ? ? OP2 A DA 4 ? ? 1.602 1.485 0.117 0.017 N 5 1 P A DA 6 ? ? OP1 A DA 6 ? ? 1.604 1.485 0.119 0.017 N 6 1 "O4'" A DT 7 ? ? "C4'" A DT 7 ? ? 1.384 1.446 -0.062 0.010 N 7 1 "O3'" A DT 7 ? ? P A 5CM 8 ? ? 1.692 1.607 0.085 0.012 Y 8 1 "O3'" A DT 9 ? ? P A DG 10 ? ? 1.686 1.607 0.079 0.012 Y 9 1 P A DG 10 ? ? OP2 A DG 10 ? ? 1.591 1.485 0.106 0.017 N 10 1 "O3'" A DG 10 ? ? P A DC 11 ? ? 1.688 1.607 0.081 0.012 Y 11 1 P A DC 11 ? ? OP2 A DC 11 ? ? 1.600 1.485 0.115 0.017 N 12 1 "O3'" B DC 13 ? ? P B DG 14 ? ? 1.679 1.607 0.072 0.012 Y 13 1 "O3'" B DG 14 ? ? P B DC 15 ? ? 1.687 1.607 0.080 0.012 Y 14 1 P B DA 16 ? ? OP2 B DA 16 ? ? 1.609 1.485 0.124 0.017 N 15 1 "O3'" B DA 16 ? ? P B DI 17 ? ? 1.681 1.607 0.074 0.012 Y 16 1 "O3'" B DI 17 ? ? P B DA 18 ? ? 1.682 1.607 0.075 0.012 Y 17 1 P B DA 18 ? ? OP2 B DA 18 ? ? 1.604 1.485 0.119 0.017 N 18 1 "O3'" B DA 18 ? ? P B DT 19 ? ? 1.695 1.607 0.088 0.012 Y 19 1 "O3'" B DT 19 ? ? P B 5CM 20 ? ? 1.703 1.607 0.096 0.012 Y 20 1 "O3'" B 5CM 20 ? ? P B DT 21 ? ? 1.684 1.607 0.077 0.012 Y 21 1 "O4'" B DT 21 ? ? "C4'" B DT 21 ? ? 1.380 1.446 -0.066 0.010 N 22 1 "O3'" B DT 21 ? ? P B DG 22 ? ? 1.685 1.607 0.078 0.012 Y 23 1 "O3'" B DG 22 ? ? P B DC 23 ? ? 1.688 1.607 0.081 0.012 Y 24 1 P B DC 23 ? ? OP2 B DC 23 ? ? 1.596 1.485 0.111 0.017 N 25 1 "O3'" B DC 23 ? ? P B DG 24 ? ? 1.698 1.607 0.091 0.012 Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N3 A DC 1 ? ? C4 A DC 1 ? ? C5 A DC 1 ? ? 118.76 121.90 -3.14 0.40 N 2 1 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 126.33 121.90 4.43 0.70 N 3 1 "C3'" A DC 1 ? ? "O3'" A DC 1 ? ? P A DG 2 ? ? 131.36 119.70 11.66 1.20 Y 4 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 110.28 108.30 1.98 0.30 N 5 1 "C5'" A DC 3 ? ? "C4'" A DC 3 ? ? "O4'" A DC 3 ? ? 118.56 109.80 8.76 1.10 N 6 1 C2 A DC 3 ? ? N3 A DC 3 ? ? C4 A DC 3 ? ? 123.29 119.90 3.39 0.50 N 7 1 N3 A DC 3 ? ? C4 A DC 3 ? ? C5 A DC 3 ? ? 119.18 121.90 -2.72 0.40 N 8 1 "C3'" A DC 3 ? ? "O3'" A DC 3 ? ? P A DA 4 ? ? 126.94 119.70 7.24 1.20 Y 9 1 "O5'" A DA 4 ? ? P A DA 4 ? ? OP1 A DA 4 ? ? 121.26 110.70 10.56 1.20 N 10 1 "O5'" A DA 4 ? ? "C5'" A DA 4 ? ? "C4'" A DA 4 ? ? 102.91 109.40 -6.49 0.80 N 11 1 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? N9 A DA 4 ? ? 113.45 108.30 5.15 0.30 N 12 1 C6 A DA 4 ? ? N1 A DA 4 ? ? C2 A DA 4 ? ? 125.00 118.60 6.40 0.60 N 13 1 N1 A DA 4 ? ? C2 A DA 4 ? ? N3 A DA 4 ? ? 125.29 129.30 -4.01 0.50 N 14 1 N3 A DA 4 ? ? C4 A DA 4 ? ? C5 A DA 4 ? ? 131.30 126.80 4.50 0.70 N 15 1 C5 A DA 4 ? ? C6 A DA 4 ? ? N1 A DA 4 ? ? 113.39 117.70 -4.31 0.50 N 16 1 C4 A DA 4 ? ? C5 A DA 4 ? ? N7 A DA 4 ? ? 113.96 110.70 3.26 0.50 N 17 1 C5 A DA 4 ? ? N7 A DA 4 ? ? C8 A DA 4 ? ? 100.36 103.90 -3.54 0.50 N 18 1 N9 A DA 4 ? ? C4 A DA 4 ? ? C5 A DA 4 ? ? 103.08 105.80 -2.72 0.40 N 19 1 N1 A DA 4 ? ? C6 A DA 4 ? ? N6 A DA 4 ? ? 125.78 118.60 7.18 0.60 N 20 1 "C3'" A DI 5 ? ? "O3'" A DI 5 ? ? P A DA 6 ? ? 130.46 119.70 10.76 1.20 Y 21 1 "O5'" A DA 6 ? ? "C5'" A DA 6 ? ? "C4'" A DA 6 ? ? 102.22 109.40 -7.18 0.80 N 22 1 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 113.97 108.30 5.67 0.30 N 23 1 C6 A DA 6 ? ? N1 A DA 6 ? ? C2 A DA 6 ? ? 122.32 118.60 3.72 0.60 N 24 1 C5 A DA 6 ? ? C6 A DA 6 ? ? N1 A DA 6 ? ? 113.18 117.70 -4.52 0.50 N 25 1 "C3'" A DA 6 ? ? "O3'" A DA 6 ? ? P A DT 7 ? ? 128.90 119.70 9.20 1.20 Y 26 1 OP1 A DT 7 ? ? P A DT 7 ? ? OP2 A DT 7 ? ? 108.58 119.60 -11.02 1.50 N 27 1 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.28 108.30 2.98 0.30 N 28 1 N1 A DT 7 ? ? C2 A DT 7 ? ? N3 A DT 7 ? ? 118.82 114.60 4.22 0.60 N 29 1 C2 A DT 7 ? ? N3 A DT 7 ? ? C4 A DT 7 ? ? 120.61 127.20 -6.59 0.60 N 30 1 N3 A DT 7 ? ? C4 A DT 7 ? ? C5 A DT 7 ? ? 121.02 115.20 5.82 0.60 N 31 1 C5 A DT 7 ? ? C4 A DT 7 ? ? O4 A DT 7 ? ? 119.76 124.90 -5.14 0.70 N 32 1 "C3'" A DT 7 ? ? "O3'" A DT 7 ? ? P A 5CM 8 ? ? 130.52 119.70 10.82 1.20 Y 33 1 "C3'" A 5CM 8 ? ? "O3'" A 5CM 8 ? ? P A DT 9 ? ? 134.84 119.70 15.14 1.20 Y 34 1 OP1 A DT 9 ? ? P A DT 9 ? ? OP2 A DT 9 ? ? 108.22 119.60 -11.38 1.50 N 35 1 N3 A DT 9 ? ? C4 A DT 9 ? ? C5 A DT 9 ? ? 120.08 115.20 4.88 0.60 N 36 1 N3 A DT 9 ? ? C2 A DT 9 ? ? O2 A DT 9 ? ? 126.98 122.30 4.68 0.60 N 37 1 C4 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 124.12 119.00 5.12 0.60 N 38 1 "C3'" A DT 9 ? ? "O3'" A DT 9 ? ? P A DG 10 ? ? 129.23 119.70 9.53 1.20 Y 39 1 "C3'" A DG 10 ? ? "C2'" A DG 10 ? ? "C1'" A DG 10 ? ? 93.49 102.40 -8.91 0.80 N 40 1 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 112.15 108.30 3.85 0.30 N 41 1 N1 A DG 10 ? ? C6 A DG 10 ? ? O6 A DG 10 ? ? 124.86 119.90 4.96 0.60 N 42 1 C5 A DG 10 ? ? C6 A DG 10 ? ? O6 A DG 10 ? ? 124.16 128.60 -4.44 0.60 N 43 1 P A DC 11 ? ? "O5'" A DC 11 ? ? "C5'" A DC 11 ? ? 132.17 120.90 11.27 1.60 N 44 1 "C5'" A DC 11 ? ? "C4'" A DC 11 ? ? "O4'" A DC 11 ? ? 116.52 109.80 6.72 1.10 N 45 1 C2 A DC 11 ? ? N3 A DC 11 ? ? C4 A DC 11 ? ? 123.50 119.90 3.60 0.50 N 46 1 N3 A DC 11 ? ? C4 A DC 11 ? ? C5 A DC 11 ? ? 119.06 121.90 -2.84 0.40 N 47 1 C8 A DG 12 ? ? N9 A DG 12 ? ? C4 A DG 12 ? ? 103.42 106.40 -2.98 0.40 N 48 1 N3 A DG 12 ? ? C4 A DG 12 ? ? N9 A DG 12 ? ? 121.58 126.00 -4.42 0.60 N 49 1 "O4'" B DC 13 ? ? "C1'" B DC 13 ? ? N1 B DC 13 ? ? 113.72 108.30 5.42 0.30 N 50 1 N3 B DC 13 ? ? C4 B DC 13 ? ? C5 B DC 13 ? ? 117.78 121.90 -4.12 0.40 N 51 1 "C3'" B DC 13 ? ? "O3'" B DC 13 ? ? P B DG 14 ? ? 129.99 119.70 10.29 1.20 Y 52 1 "O4'" B DG 14 ? ? "C1'" B DG 14 ? ? N9 B DG 14 ? ? 113.25 108.30 4.95 0.30 N 53 1 N1 B DG 14 ? ? C6 B DG 14 ? ? O6 B DG 14 ? ? 124.31 119.90 4.41 0.60 N 54 1 "C3'" B DG 14 ? ? "O3'" B DG 14 ? ? P B DC 15 ? ? 128.80 119.70 9.10 1.20 Y 55 1 "C5'" B DC 15 ? ? "C4'" B DC 15 ? ? "O4'" B DC 15 ? ? 116.70 109.80 6.90 1.10 N 56 1 "O4'" B DC 15 ? ? "C1'" B DC 15 ? ? N1 B DC 15 ? ? 103.50 108.00 -4.50 0.70 N 57 1 C2 B DC 15 ? ? N3 B DC 15 ? ? C4 B DC 15 ? ? 124.85 119.90 4.95 0.50 N 58 1 N3 B DC 15 ? ? C4 B DC 15 ? ? C5 B DC 15 ? ? 118.46 121.90 -3.44 0.40 N 59 1 C5 B DC 15 ? ? C6 B DC 15 ? ? N1 B DC 15 ? ? 124.40 121.00 3.40 0.50 N 60 1 N1 B DC 15 ? ? C2 B DC 15 ? ? O2 B DC 15 ? ? 114.72 118.90 -4.18 0.60 N 61 1 N3 B DC 15 ? ? C2 B DC 15 ? ? O2 B DC 15 ? ? 129.28 121.90 7.38 0.70 N 62 1 "C3'" B DC 15 ? ? "O3'" B DC 15 ? ? P B DA 16 ? ? 129.36 119.70 9.66 1.20 Y 63 1 "O5'" B DA 16 ? ? "C5'" B DA 16 ? ? "C4'" B DA 16 ? ? 104.38 109.40 -5.02 0.80 N 64 1 "O4'" B DA 16 ? ? "C1'" B DA 16 ? ? N9 B DA 16 ? ? 113.39 108.30 5.09 0.30 N 65 1 C6 B DA 16 ? ? N1 B DA 16 ? ? C2 B DA 16 ? ? 122.61 118.60 4.01 0.60 N 66 1 C5 B DA 16 ? ? C6 B DA 16 ? ? N1 B DA 16 ? ? 113.71 117.70 -3.99 0.50 N 67 1 "C3'" B DA 16 ? ? "O3'" B DA 16 ? ? P B DI 17 ? ? 130.80 119.70 11.10 1.20 Y 68 1 "C3'" B DI 17 ? ? "O3'" B DI 17 ? ? P B DA 18 ? ? 130.47 119.70 10.77 1.20 Y 69 1 OP1 B DA 18 ? ? P B DA 18 ? ? OP2 B DA 18 ? ? 108.12 119.60 -11.48 1.50 N 70 1 "O4'" B DA 18 ? ? "C1'" B DA 18 ? ? N9 B DA 18 ? ? 114.10 108.30 5.80 0.30 N 71 1 C6 B DA 18 ? ? N1 B DA 18 ? ? C2 B DA 18 ? ? 122.87 118.60 4.27 0.60 N 72 1 N1 B DA 18 ? ? C2 B DA 18 ? ? N3 B DA 18 ? ? 126.30 129.30 -3.00 0.50 N 73 1 C5 B DA 18 ? ? C6 B DA 18 ? ? N1 B DA 18 ? ? 113.90 117.70 -3.80 0.50 N 74 1 C5 B DA 18 ? ? N7 B DA 18 ? ? C8 B DA 18 ? ? 100.03 103.90 -3.87 0.50 N 75 1 C6 B DA 18 ? ? C5 B DA 18 ? ? N7 B DA 18 ? ? 127.55 132.30 -4.75 0.70 N 76 1 N1 B DA 18 ? ? C6 B DA 18 ? ? N6 B DA 18 ? ? 125.84 118.60 7.24 0.60 N 77 1 "C3'" B DA 18 ? ? "O3'" B DA 18 ? ? P B DT 19 ? ? 127.95 119.70 8.25 1.20 Y 78 1 OP1 B DT 19 ? ? P B DT 19 ? ? OP2 B DT 19 ? ? 106.90 119.60 -12.70 1.50 N 79 1 "O4'" B DT 19 ? ? "C1'" B DT 19 ? ? N1 B DT 19 ? ? 115.69 108.30 7.39 0.30 N 80 1 C4 B DT 19 ? ? C5 B DT 19 ? ? C7 B DT 19 ? ? 124.91 119.00 5.91 0.60 N 81 1 C6 B DT 19 ? ? C5 B DT 19 ? ? C7 B DT 19 ? ? 116.40 122.90 -6.50 0.60 N 82 1 OP1 B DT 21 ? ? P B DT 21 ? ? OP2 B DT 21 ? ? 109.76 119.60 -9.84 1.50 N 83 1 N3 B DT 21 ? ? C4 B DT 21 ? ? C5 B DT 21 ? ? 119.42 115.20 4.22 0.60 N 84 1 N1 B DT 21 ? ? C2 B DT 21 ? ? O2 B DT 21 ? ? 116.30 123.10 -6.80 0.80 N 85 1 N3 B DT 21 ? ? C2 B DT 21 ? ? O2 B DT 21 ? ? 129.66 122.30 7.36 0.60 N 86 1 N3 B DT 21 ? ? C4 B DT 21 ? ? O4 B DT 21 ? ? 116.11 119.90 -3.79 0.60 N 87 1 C4 B DT 21 ? ? C5 B DT 21 ? ? C7 B DT 21 ? ? 126.17 119.00 7.17 0.60 N 88 1 C6 B DT 21 ? ? C5 B DT 21 ? ? C7 B DT 21 ? ? 118.84 122.90 -4.06 0.60 N 89 1 "C3'" B DT 21 ? ? "O3'" B DT 21 ? ? P B DG 22 ? ? 128.53 119.70 8.83 1.20 Y 90 1 "C3'" B DG 22 ? ? "C2'" B DG 22 ? ? "C1'" B DG 22 ? ? 96.07 102.40 -6.33 0.80 N 91 1 "O4'" B DG 22 ? ? "C1'" B DG 22 ? ? N9 B DG 22 ? ? 113.64 108.30 5.34 0.30 N 92 1 "O4'" B DC 23 ? ? "C1'" B DC 23 ? ? N1 B DC 23 ? ? 112.52 108.30 4.22 0.30 N 93 1 C5 B DC 23 ? ? C6 B DC 23 ? ? N1 B DC 23 ? ? 125.09 121.00 4.09 0.50 N 94 1 C5 B DG 24 ? ? N7 B DG 24 ? ? C8 B DG 24 ? ? 100.65 104.30 -3.65 0.50 N 95 1 N7 B DG 24 ? ? C8 B DG 24 ? ? N9 B DG 24 ? ? 117.67 113.10 4.57 0.50 N 96 1 C8 B DG 24 ? ? N9 B DG 24 ? ? C4 B DG 24 ? ? 102.92 106.40 -3.48 0.40 N 97 1 N3 B DG 24 ? ? C2 B DG 24 ? ? N2 B DG 24 ? ? 124.57 119.90 4.67 0.70 N # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A 5CM 8 A 5CM 8 ? DC ? 2 B 5CM 8 B 5CM 20 ? DC ? # loop_ _refine_B_iso.class _refine_B_iso.details _refine_B_iso.treatment _refine_B_iso.pdbx_refine_id 'ALL ATOMS' TR isotropic 'X-RAY DIFFRACTION' 'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION' # loop_ _refine_occupancy.class _refine_occupancy.treatment _refine_occupancy.pdbx_refine_id 'ALL ATOMS' fix 'X-RAY DIFFRACTION' 'ALL WATERS' fix 'X-RAY DIFFRACTION' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 5CM N1 N N N 1 5CM C2 C N N 2 5CM N3 N N N 3 5CM C4 C N N 4 5CM C5 C N N 5 5CM C5A C N N 6 5CM C6 C N N 7 5CM O2 O N N 8 5CM N4 N N N 9 5CM "C1'" C N R 10 5CM "C2'" C N N 11 5CM "C3'" C N S 12 5CM "C4'" C N R 13 5CM "O4'" O N N 14 5CM "O3'" O N N 15 5CM "C5'" C N N 16 5CM "O5'" O N N 17 5CM P P N N 18 5CM OP1 O N N 19 5CM OP2 O N N 20 5CM OP3 O N N 21 5CM H5A1 H N N 22 5CM H5A2 H N N 23 5CM H5A3 H N N 24 5CM H6 H N N 25 5CM HN41 H N N 26 5CM HN42 H N N 27 5CM "H1'" H N N 28 5CM "H2'" H N N 29 5CM "H2''" H N N 30 5CM "H3'" H N N 31 5CM "H4'" H N N 32 5CM "HO3'" H N N 33 5CM "H5'" H N N 34 5CM "H5''" H N N 35 5CM HOP2 H N N 36 5CM HOP3 H N N 37 DA OP3 O N N 38 DA P P N N 39 DA OP1 O N N 40 DA OP2 O N N 41 DA "O5'" O N N 42 DA "C5'" C N N 43 DA "C4'" C N R 44 DA "O4'" O N N 45 DA "C3'" C N S 46 DA "O3'" O N N 47 DA "C2'" C N N 48 DA "C1'" C N R 49 DA N9 N Y N 50 DA C8 C Y N 51 DA N7 N Y N 52 DA C5 C Y N 53 DA C6 C Y N 54 DA N6 N N N 55 DA N1 N Y N 56 DA C2 C Y N 57 DA N3 N Y N 58 DA C4 C Y N 59 DA HOP3 H N N 60 DA HOP2 H N N 61 DA "H5'" H N N 62 DA "H5''" H N N 63 DA "H4'" H N N 64 DA "H3'" H N N 65 DA "HO3'" H N N 66 DA "H2'" H N N 67 DA "H2''" H N N 68 DA "H1'" H N N 69 DA H8 H N N 70 DA H61 H N N 71 DA H62 H N N 72 DA H2 H N N 73 DC OP3 O N N 74 DC P P N N 75 DC OP1 O N N 76 DC OP2 O N N 77 DC "O5'" O N N 78 DC "C5'" C N N 79 DC "C4'" C N R 80 DC "O4'" O N N 81 DC "C3'" C N S 82 DC "O3'" O N N 83 DC "C2'" C N N 84 DC "C1'" C N R 85 DC N1 N N N 86 DC C2 C N N 87 DC O2 O N N 88 DC N3 N N N 89 DC C4 C N N 90 DC N4 N N N 91 DC C5 C N N 92 DC C6 C N N 93 DC HOP3 H N N 94 DC HOP2 H N N 95 DC "H5'" H N N 96 DC "H5''" H N N 97 DC "H4'" H N N 98 DC "H3'" H N N 99 DC "HO3'" H N N 100 DC "H2'" H N N 101 DC "H2''" H N N 102 DC "H1'" H N N 103 DC H41 H N N 104 DC H42 H N N 105 DC H5 H N N 106 DC H6 H N N 107 DG OP3 O N N 108 DG P P N N 109 DG OP1 O N N 110 DG OP2 O N N 111 DG "O5'" O N N 112 DG "C5'" C N N 113 DG "C4'" C N R 114 DG "O4'" O N N 115 DG "C3'" C N S 116 DG "O3'" O N N 117 DG "C2'" C N N 118 DG "C1'" C N R 119 DG N9 N Y N 120 DG C8 C Y N 121 DG N7 N Y N 122 DG C5 C Y N 123 DG C6 C N N 124 DG O6 O N N 125 DG N1 N N N 126 DG C2 C N N 127 DG N2 N N N 128 DG N3 N N N 129 DG C4 C Y N 130 DG HOP3 H N N 131 DG HOP2 H N N 132 DG "H5'" H N N 133 DG "H5''" H N N 134 DG "H4'" H N N 135 DG "H3'" H N N 136 DG "HO3'" H N N 137 DG "H2'" H N N 138 DG "H2''" H N N 139 DG "H1'" H N N 140 DG H8 H N N 141 DG H1 H N N 142 DG H21 H N N 143 DG H22 H N N 144 DI OP3 O N N 145 DI P P N N 146 DI OP1 O N N 147 DI OP2 O N N 148 DI "O5'" O N N 149 DI "C5'" C N N 150 DI "C4'" C N R 151 DI "O4'" O N N 152 DI "C3'" C N S 153 DI "O3'" O N N 154 DI "C2'" C N N 155 DI "C1'" C N R 156 DI N9 N Y N 157 DI C8 C Y N 158 DI N7 N Y N 159 DI C5 C Y N 160 DI C6 C N N 161 DI O6 O N N 162 DI N1 N N N 163 DI C2 C N N 164 DI N3 N N N 165 DI C4 C Y N 166 DI HOP3 H N N 167 DI HOP2 H N N 168 DI "H5'" H N N 169 DI "H5''" H N N 170 DI "H4'" H N N 171 DI "H3'" H N N 172 DI "HO3'" H N N 173 DI "H2'" H N N 174 DI "H2''" H N N 175 DI "H1'" H N N 176 DI H8 H N N 177 DI H1 H N N 178 DI H2 H N N 179 DT OP3 O N N 180 DT P P N N 181 DT OP1 O N N 182 DT OP2 O N N 183 DT "O5'" O N N 184 DT "C5'" C N N 185 DT "C4'" C N R 186 DT "O4'" O N N 187 DT "C3'" C N S 188 DT "O3'" O N N 189 DT "C2'" C N N 190 DT "C1'" C N R 191 DT N1 N N N 192 DT C2 C N N 193 DT O2 O N N 194 DT N3 N N N 195 DT C4 C N N 196 DT O4 O N N 197 DT C5 C N N 198 DT C7 C N N 199 DT C6 C N N 200 DT HOP3 H N N 201 DT HOP2 H N N 202 DT "H5'" H N N 203 DT "H5''" H N N 204 DT "H4'" H N N 205 DT "H3'" H N N 206 DT "HO3'" H N N 207 DT "H2'" H N N 208 DT "H2''" H N N 209 DT "H1'" H N N 210 DT H3 H N N 211 DT H71 H N N 212 DT H72 H N N 213 DT H73 H N N 214 DT H6 H N N 215 HOH O O N N 216 HOH H1 H N N 217 HOH H2 H N N 218 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5CM N1 C2 sing N N 1 5CM N1 C6 sing N N 2 5CM N1 "C1'" sing N N 3 5CM C2 N3 sing N N 4 5CM C2 O2 doub N N 5 5CM N3 C4 doub N N 6 5CM C4 C5 sing N N 7 5CM C4 N4 sing N N 8 5CM C5 C5A sing N N 9 5CM C5 C6 doub N N 10 5CM C5A H5A1 sing N N 11 5CM C5A H5A2 sing N N 12 5CM C5A H5A3 sing N N 13 5CM C6 H6 sing N N 14 5CM N4 HN41 sing N N 15 5CM N4 HN42 sing N N 16 5CM "C1'" "C2'" sing N N 17 5CM "C1'" "O4'" sing N N 18 5CM "C1'" "H1'" sing N N 19 5CM "C2'" "C3'" sing N N 20 5CM "C2'" "H2'" sing N N 21 5CM "C2'" "H2''" sing N N 22 5CM "C3'" "C4'" sing N N 23 5CM "C3'" "O3'" sing N N 24 5CM "C3'" "H3'" sing N N 25 5CM "C4'" "O4'" sing N N 26 5CM "C4'" "C5'" sing N N 27 5CM "C4'" "H4'" sing N N 28 5CM "O3'" "HO3'" sing N N 29 5CM "C5'" "O5'" sing N N 30 5CM "C5'" "H5'" sing N N 31 5CM "C5'" "H5''" sing N N 32 5CM "O5'" P sing N N 33 5CM P OP1 doub N N 34 5CM P OP2 sing N N 35 5CM P OP3 sing N N 36 5CM OP2 HOP2 sing N N 37 5CM OP3 HOP3 sing N N 38 DA OP3 P sing N N 39 DA OP3 HOP3 sing N N 40 DA P OP1 doub N N 41 DA P OP2 sing N N 42 DA P "O5'" sing N N 43 DA OP2 HOP2 sing N N 44 DA "O5'" "C5'" sing N N 45 DA "C5'" "C4'" sing N N 46 DA "C5'" "H5'" sing N N 47 DA "C5'" "H5''" sing N N 48 DA "C4'" "O4'" sing N N 49 DA "C4'" "C3'" sing N N 50 DA "C4'" "H4'" sing N N 51 DA "O4'" "C1'" sing N N 52 DA "C3'" "O3'" sing N N 53 DA "C3'" "C2'" sing N N 54 DA "C3'" "H3'" sing N N 55 DA "O3'" "HO3'" sing N N 56 DA "C2'" "C1'" sing N N 57 DA "C2'" "H2'" sing N N 58 DA "C2'" "H2''" sing N N 59 DA "C1'" N9 sing N N 60 DA "C1'" "H1'" sing N N 61 DA N9 C8 sing Y N 62 DA N9 C4 sing Y N 63 DA C8 N7 doub Y N 64 DA C8 H8 sing N N 65 DA N7 C5 sing Y N 66 DA C5 C6 sing Y N 67 DA C5 C4 doub Y N 68 DA C6 N6 sing N N 69 DA C6 N1 doub Y N 70 DA N6 H61 sing N N 71 DA N6 H62 sing N N 72 DA N1 C2 sing Y N 73 DA C2 N3 doub Y N 74 DA C2 H2 sing N N 75 DA N3 C4 sing Y N 76 DC OP3 P sing N N 77 DC OP3 HOP3 sing N N 78 DC P OP1 doub N N 79 DC P OP2 sing N N 80 DC P "O5'" sing N N 81 DC OP2 HOP2 sing N N 82 DC "O5'" "C5'" sing N N 83 DC "C5'" "C4'" sing N N 84 DC "C5'" "H5'" sing N N 85 DC "C5'" "H5''" sing N N 86 DC "C4'" "O4'" sing N N 87 DC "C4'" "C3'" sing N N 88 DC "C4'" "H4'" sing N N 89 DC "O4'" "C1'" sing N N 90 DC "C3'" "O3'" sing N N 91 DC "C3'" "C2'" sing N N 92 DC "C3'" "H3'" sing N N 93 DC "O3'" "HO3'" sing N N 94 DC "C2'" "C1'" sing N N 95 DC "C2'" "H2'" sing N N 96 DC "C2'" "H2''" sing N N 97 DC "C1'" N1 sing N N 98 DC "C1'" "H1'" sing N N 99 DC N1 C2 sing N N 100 DC N1 C6 sing N N 101 DC C2 O2 doub N N 102 DC C2 N3 sing N N 103 DC N3 C4 doub N N 104 DC C4 N4 sing N N 105 DC C4 C5 sing N N 106 DC N4 H41 sing N N 107 DC N4 H42 sing N N 108 DC C5 C6 doub N N 109 DC C5 H5 sing N N 110 DC C6 H6 sing N N 111 DG OP3 P sing N N 112 DG OP3 HOP3 sing N N 113 DG P OP1 doub N N 114 DG P OP2 sing N N 115 DG P "O5'" sing N N 116 DG OP2 HOP2 sing N N 117 DG "O5'" "C5'" sing N N 118 DG "C5'" "C4'" sing N N 119 DG "C5'" "H5'" sing N N 120 DG "C5'" "H5''" sing N N 121 DG "C4'" "O4'" sing N N 122 DG "C4'" "C3'" sing N N 123 DG "C4'" "H4'" sing N N 124 DG "O4'" "C1'" sing N N 125 DG "C3'" "O3'" sing N N 126 DG "C3'" "C2'" sing N N 127 DG "C3'" "H3'" sing N N 128 DG "O3'" "HO3'" sing N N 129 DG "C2'" "C1'" sing N N 130 DG "C2'" "H2'" sing N N 131 DG "C2'" "H2''" sing N N 132 DG "C1'" N9 sing N N 133 DG "C1'" "H1'" sing N N 134 DG N9 C8 sing Y N 135 DG N9 C4 sing Y N 136 DG C8 N7 doub Y N 137 DG C8 H8 sing N N 138 DG N7 C5 sing Y N 139 DG C5 C6 sing N N 140 DG C5 C4 doub Y N 141 DG C6 O6 doub N N 142 DG C6 N1 sing N N 143 DG N1 C2 sing N N 144 DG N1 H1 sing N N 145 DG C2 N2 sing N N 146 DG C2 N3 doub N N 147 DG N2 H21 sing N N 148 DG N2 H22 sing N N 149 DG N3 C4 sing N N 150 DI OP3 P sing N N 151 DI OP3 HOP3 sing N N 152 DI P OP1 doub N N 153 DI P OP2 sing N N 154 DI P "O5'" sing N N 155 DI OP2 HOP2 sing N N 156 DI "O5'" "C5'" sing N N 157 DI "C5'" "C4'" sing N N 158 DI "C5'" "H5'" sing N N 159 DI "C5'" "H5''" sing N N 160 DI "C4'" "O4'" sing N N 161 DI "C4'" "C3'" sing N N 162 DI "C4'" "H4'" sing N N 163 DI "O4'" "C1'" sing N N 164 DI "C3'" "O3'" sing N N 165 DI "C3'" "C2'" sing N N 166 DI "C3'" "H3'" sing N N 167 DI "O3'" "HO3'" sing N N 168 DI "C2'" "C1'" sing N N 169 DI "C2'" "H2'" sing N N 170 DI "C2'" "H2''" sing N N 171 DI "C1'" N9 sing N N 172 DI "C1'" "H1'" sing N N 173 DI N9 C8 sing Y N 174 DI N9 C4 sing Y N 175 DI C8 N7 doub Y N 176 DI C8 H8 sing N N 177 DI N7 C5 sing Y N 178 DI C5 C6 sing N N 179 DI C5 C4 doub Y N 180 DI C6 O6 doub N N 181 DI C6 N1 sing N N 182 DI N1 C2 sing N N 183 DI N1 H1 sing N N 184 DI C2 N3 doub N N 185 DI C2 H2 sing N N 186 DI N3 C4 sing N N 187 DT OP3 P sing N N 188 DT OP3 HOP3 sing N N 189 DT P OP1 doub N N 190 DT P OP2 sing N N 191 DT P "O5'" sing N N 192 DT OP2 HOP2 sing N N 193 DT "O5'" "C5'" sing N N 194 DT "C5'" "C4'" sing N N 195 DT "C5'" "H5'" sing N N 196 DT "C5'" "H5''" sing N N 197 DT "C4'" "O4'" sing N N 198 DT "C4'" "C3'" sing N N 199 DT "C4'" "H4'" sing N N 200 DT "O4'" "C1'" sing N N 201 DT "C3'" "O3'" sing N N 202 DT "C3'" "C2'" sing N N 203 DT "C3'" "H3'" sing N N 204 DT "O3'" "HO3'" sing N N 205 DT "C2'" "C1'" sing N N 206 DT "C2'" "H2'" sing N N 207 DT "C2'" "H2''" sing N N 208 DT "C1'" N1 sing N N 209 DT "C1'" "H1'" sing N N 210 DT N1 C2 sing N N 211 DT N1 C6 sing N N 212 DT C2 O2 doub N N 213 DT C2 N3 sing N N 214 DT N3 C4 sing N N 215 DT N3 H3 sing N N 216 DT C4 O4 doub N N 217 DT C4 C5 sing N N 218 DT C5 C7 sing N N 219 DT C5 C6 doub N N 220 DT C7 H71 sing N N 221 DT C7 H72 sing N N 222 DT C7 H73 sing N N 223 DT C6 H6 sing N N 224 HOH O H1 sing N N 225 HOH O H2 sing N N 226 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 297D 'double helix' 297D 'b-form double helix' 297D 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 12 1_555 1.408 -0.195 -0.019 3.571 -16.392 3.714 1 A_DC1:DG24_B A 1 ? B 24 ? 19 1 1 A DG 2 1_555 B DC 11 1_555 -0.717 -0.430 0.513 4.437 -13.804 -2.367 2 A_DG2:DC23_B A 2 ? B 23 ? 19 1 1 A DC 3 1_555 B DG 10 1_555 0.175 -0.226 0.065 -0.670 -8.535 -4.930 3 A_DC3:DG22_B A 3 ? B 22 ? 19 1 1 A DA 4 1_555 B DT 9 1_555 -0.512 -0.391 -0.320 10.192 -15.504 1.681 4 A_DA4:DT21_B A 4 ? B 21 ? 20 1 1 A DA 6 1_555 B DT 7 1_555 -0.133 -0.211 0.175 3.204 -21.701 1.756 5 A_DA6:DT19_B A 6 ? B 19 ? 20 1 1 A DT 7 1_555 B DA 6 1_555 -0.083 -0.126 0.487 1.458 -23.186 8.679 6 A_DT7:DA18_B A 7 ? B 18 ? ? 1 1 A DT 9 1_555 B DA 4 1_555 -0.212 -0.393 -0.226 -10.519 -17.872 -2.207 7 A_DT9:DA16_B A 9 ? B 16 ? 20 1 1 A DG 10 1_555 B DC 3 1_555 -0.697 -0.310 0.258 2.967 -10.926 1.114 8 A_DG10:DC15_B A 10 ? B 15 ? 19 1 1 A DC 11 1_555 B DG 2 1_555 0.451 -0.365 0.351 1.694 -23.200 1.768 9 A_DC11:DG14_B A 11 ? B 14 ? 19 1 1 A DG 12 1_555 B DC 1 1_555 -0.750 -0.275 0.502 9.383 4.231 -5.154 10 A_DG12:DC13_B A 12 ? B 13 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 12 1_555 A DG 2 1_555 B DC 11 1_555 -0.417 -0.103 3.166 -6.290 8.771 29.481 -1.808 -0.388 3.035 16.553 11.871 31.353 1 AA_DC1DG2:DC23DG24_BB A 1 ? B 24 ? A 2 ? B 23 ? 1 A DG 2 1_555 B DC 11 1_555 A DC 3 1_555 B DG 10 1_555 0.351 0.543 3.532 4.147 -4.873 42.276 1.270 -0.034 3.469 -6.711 -5.711 42.736 2 AA_DG2DC3:DG22DC23_BB A 2 ? B 23 ? A 3 ? B 22 ? 1 A DC 3 1_555 B DG 10 1_555 A DA 4 1_555 B DT 9 1_555 -0.277 0.714 3.129 5.104 8.798 24.015 -0.797 1.996 3.073 20.034 -11.621 26.051 3 AA_DC3DA4:DT21DG22_BB A 3 ? B 22 ? A 4 ? B 21 ? 1 A DA 4 1_555 B DT 9 1_555 A DA 6 1_555 B DT 7 1_555 0.161 0.053 6.582 -6.542 3.614 77.976 -0.160 -0.494 6.552 2.866 5.188 78.277 4 AA_DA4DA6:DT19DT21_BB A 4 ? B 21 ? A 6 ? B 19 ? 1 A DA 6 1_555 B DT 7 1_555 A DT 7 1_555 B DA 6 1_555 0.418 -0.560 3.229 -1.695 -0.227 30.771 -1.011 -1.112 3.206 -0.428 3.191 30.817 5 AA_DA6DT7:DA18DT19_BB A 6 ? B 19 ? A 7 ? B 18 ? 1 A DT 7 1_555 B DA 6 1_555 A DT 9 1_555 B DA 4 1_555 -1.069 0.174 6.577 4.268 -2.811 78.800 0.290 1.074 6.514 -2.212 -3.359 78.939 6 AA_DT7DT9:DA16DA18_BB A 7 ? B 18 ? A 9 ? B 16 ? 1 A DT 9 1_555 B DA 4 1_555 A DG 10 1_555 B DC 3 1_555 0.596 1.021 3.073 -6.296 3.244 23.221 1.467 -3.284 2.925 7.828 15.194 24.263 7 AA_DT9DG10:DC15DA16_BB A 9 ? B 16 ? A 10 ? B 15 ? 1 A DG 10 1_555 B DC 3 1_555 A DC 11 1_555 B DG 2 1_555 -1.117 0.757 3.516 -3.559 -12.977 48.631 1.875 1.043 3.294 -15.418 4.229 50.349 8 AA_DG10DC11:DG14DC15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A DC 11 1_555 B DG 2 1_555 A DG 12 1_555 B DC 1 1_555 0.948 0.536 3.112 1.354 -2.638 33.640 1.330 -1.424 3.097 -4.547 -2.334 33.766 9 AA_DC11DG12:DC13DG14_BB A 11 ? B 14 ? A 12 ? B 13 ? # _atom_sites.entry_id 297D _atom_sites.fract_transf_matrix[1][1] 0.040091 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024665 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015384 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_