data_29HQ # _entry.id 29HQ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.416 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 29HQ pdb_000029hq 10.2210/pdb29hq/pdb WWPDB D_1292155198 ? ? EMDB EMD-57189 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2026-08-26 ? 2 'EM metadata' 1 0 2026-08-26 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 29HQ _pdbx_database_status.recvd_initial_deposition_date 2026-03-12 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'IAPP S20G growth-phase fibril polymorph 3PF-LJ' _pdbx_database_related.db_id EMD-57189 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email scheres@mrc-lmb.cam.ac.uk _pdbx_contact_author.name_first Sjors _pdbx_contact_author.name_last Scheres _pdbx_contact_author.name_mi H.W. _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-0462-6540 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Lovestam, S.' 1 ? 'Scheres, S.H.W.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Cryo-EM image processing of amyloid filaments in RELION-5.1' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Lovestam, S.' 1 ? primary 'Shi, J.' 2 ? primary 'Li, D.B.' 3 ? primary 'Scheres, S.H.W.' 4 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'Islet amyloid polypeptide' _entity.formula_weight 3083.354 _entity.pdbx_number_of_molecules 15 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'IAPP,Amylin,Diabetes-associated peptide,DAP,Insulinoma amyloid peptide' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'TQRLANFLVHSGNNFGAILSSTNVGSNTY(NH2)' _entity_poly.pdbx_seq_one_letter_code_can TQRLANFLVHSGNNFGAILSSTNVGSNTYX _entity_poly.pdbx_strand_id A,B,C,E,F,G,I,J,K,M,N,O,Q,R,S _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 THR n 1 2 GLN n 1 3 ARG n 1 4 LEU n 1 5 ALA n 1 6 ASN n 1 7 PHE n 1 8 LEU n 1 9 VAL n 1 10 HIS n 1 11 SER n 1 12 GLY n 1 13 ASN n 1 14 ASN n 1 15 PHE n 1 16 GLY n 1 17 ALA n 1 18 ILE n 1 19 LEU n 1 20 SER n 1 21 SER n 1 22 THR n 1 23 ASN n 1 24 VAL n 1 25 GLY n 1 26 SER n 1 27 ASN n 1 28 THR n 1 29 TYR n 1 30 NH2 n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 30 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 THR 1 9 9 THR THR A . n A 1 2 GLN 2 10 10 GLN GLN A . n A 1 3 ARG 3 11 11 ARG ARG A . n A 1 4 LEU 4 12 12 LEU LEU A . n A 1 5 ALA 5 13 13 ALA ALA A . n A 1 6 ASN 6 14 14 ASN ASN A . n A 1 7 PHE 7 15 15 PHE PHE A . n A 1 8 LEU 8 16 16 LEU LEU A . n A 1 9 VAL 9 17 17 VAL VAL A . n A 1 10 HIS 10 18 18 HIS HIS A . n A 1 11 SER 11 19 19 SER SER A . n A 1 12 GLY 12 20 20 GLY GLY A . n A 1 13 ASN 13 21 21 ASN ASN A . n A 1 14 ASN 14 22 22 ASN ASN A . n A 1 15 PHE 15 23 23 PHE PHE A . n A 1 16 GLY 16 24 24 GLY GLY A . n A 1 17 ALA 17 25 25 ALA ALA A . n A 1 18 ILE 18 26 26 ILE ILE A . n A 1 19 LEU 19 27 27 LEU LEU A . n A 1 20 SER 20 28 28 SER SER A . n A 1 21 SER 21 29 29 SER SER A . n A 1 22 THR 22 30 30 THR THR A . n A 1 23 ASN 23 31 31 ASN ASN A . n A 1 24 VAL 24 32 32 VAL VAL A . n A 1 25 GLY 25 33 33 GLY GLY A . n A 1 26 SER 26 34 34 SER SER A . n A 1 27 ASN 27 35 35 ASN ASN A . n A 1 28 THR 28 36 36 THR THR A . n A 1 29 TYR 29 37 37 TYR TYR A . n A 1 30 NH2 30 38 38 NH2 NH2 A . n B 1 1 THR 1 9 9 THR THR B . n B 1 2 GLN 2 10 10 GLN GLN B . n B 1 3 ARG 3 11 11 ARG ARG B . n B 1 4 LEU 4 12 12 LEU LEU B . n B 1 5 ALA 5 13 13 ALA ALA B . n B 1 6 ASN 6 14 14 ASN ASN B . n B 1 7 PHE 7 15 15 PHE PHE B . n B 1 8 LEU 8 16 16 LEU LEU B . n B 1 9 VAL 9 17 17 VAL VAL B . n B 1 10 HIS 10 18 18 HIS HIS B . n B 1 11 SER 11 19 19 SER SER B . n B 1 12 GLY 12 20 20 GLY GLY B . n B 1 13 ASN 13 21 21 ASN ASN B . n B 1 14 ASN 14 22 22 ASN ASN B . n B 1 15 PHE 15 23 23 PHE PHE B . n B 1 16 GLY 16 24 24 GLY GLY B . n B 1 17 ALA 17 25 25 ALA ALA B . n B 1 18 ILE 18 26 26 ILE ILE B . n B 1 19 LEU 19 27 27 LEU LEU B . n B 1 20 SER 20 28 28 SER SER B . n B 1 21 SER 21 29 29 SER SER B . n B 1 22 THR 22 30 30 THR THR B . n B 1 23 ASN 23 31 31 ASN ASN B . n B 1 24 VAL 24 32 32 VAL VAL B . n B 1 25 GLY 25 33 33 GLY GLY B . n B 1 26 SER 26 34 34 SER SER B . n B 1 27 ASN 27 35 35 ASN ASN B . n B 1 28 THR 28 36 36 THR THR B . n B 1 29 TYR 29 37 37 TYR TYR B . n B 1 30 NH2 30 38 38 NH2 NH2 B . n C 1 1 THR 1 9 ? ? ? C . n C 1 2 GLN 2 10 ? ? ? C . n C 1 3 ARG 3 11 ? ? ? C . n C 1 4 LEU 4 12 ? ? ? C . n C 1 5 ALA 5 13 13 ALA ALA C . n C 1 6 ASN 6 14 14 ASN ASN C . n C 1 7 PHE 7 15 15 PHE PHE C . n C 1 8 LEU 8 16 16 LEU LEU C . n C 1 9 VAL 9 17 17 VAL VAL C . n C 1 10 HIS 10 18 18 HIS HIS C . n C 1 11 SER 11 19 19 SER SER C . n C 1 12 GLY 12 20 20 GLY GLY C . n C 1 13 ASN 13 21 21 ASN ASN C . n C 1 14 ASN 14 22 22 ASN ASN C . n C 1 15 PHE 15 23 23 PHE PHE C . n C 1 16 GLY 16 24 24 GLY GLY C . n C 1 17 ALA 17 25 25 ALA ALA C . n C 1 18 ILE 18 26 26 ILE ILE C . n C 1 19 LEU 19 27 27 LEU LEU C . n C 1 20 SER 20 28 28 SER SER C . n C 1 21 SER 21 29 29 SER SER C . n C 1 22 THR 22 30 30 THR THR C . n C 1 23 ASN 23 31 31 ASN ASN C . n C 1 24 VAL 24 32 32 VAL VAL C . n C 1 25 GLY 25 33 33 GLY GLY C . n C 1 26 SER 26 34 34 SER SER C . n C 1 27 ASN 27 35 35 ASN ASN C . n C 1 28 THR 28 36 36 THR THR C . n C 1 29 TYR 29 37 37 TYR TYR C . n C 1 30 NH2 30 38 38 NH2 NH2 C . n D 1 1 THR 1 9 9 THR THR E . n D 1 2 GLN 2 10 10 GLN GLN E . n D 1 3 ARG 3 11 11 ARG ARG E . n D 1 4 LEU 4 12 12 LEU LEU E . n D 1 5 ALA 5 13 13 ALA ALA E . n D 1 6 ASN 6 14 14 ASN ASN E . n D 1 7 PHE 7 15 15 PHE PHE E . n D 1 8 LEU 8 16 16 LEU LEU E . n D 1 9 VAL 9 17 17 VAL VAL E . n D 1 10 HIS 10 18 18 HIS HIS E . n D 1 11 SER 11 19 19 SER SER E . n D 1 12 GLY 12 20 20 GLY GLY E . n D 1 13 ASN 13 21 21 ASN ASN E . n D 1 14 ASN 14 22 22 ASN ASN E . n D 1 15 PHE 15 23 23 PHE PHE E . n D 1 16 GLY 16 24 24 GLY GLY E . n D 1 17 ALA 17 25 25 ALA ALA E . n D 1 18 ILE 18 26 26 ILE ILE E . n D 1 19 LEU 19 27 27 LEU LEU E . n D 1 20 SER 20 28 28 SER SER E . n D 1 21 SER 21 29 29 SER SER E . n D 1 22 THR 22 30 30 THR THR E . n D 1 23 ASN 23 31 31 ASN ASN E . n D 1 24 VAL 24 32 32 VAL VAL E . n D 1 25 GLY 25 33 33 GLY GLY E . n D 1 26 SER 26 34 34 SER SER E . n D 1 27 ASN 27 35 35 ASN ASN E . n D 1 28 THR 28 36 36 THR THR E . n D 1 29 TYR 29 37 37 TYR TYR E . n D 1 30 NH2 30 38 38 NH2 NH2 E . n E 1 1 THR 1 9 9 THR THR F . n E 1 2 GLN 2 10 10 GLN GLN F . n E 1 3 ARG 3 11 11 ARG ARG F . n E 1 4 LEU 4 12 12 LEU LEU F . n E 1 5 ALA 5 13 13 ALA ALA F . n E 1 6 ASN 6 14 14 ASN ASN F . n E 1 7 PHE 7 15 15 PHE PHE F . n E 1 8 LEU 8 16 16 LEU LEU F . n E 1 9 VAL 9 17 17 VAL VAL F . n E 1 10 HIS 10 18 18 HIS HIS F . n E 1 11 SER 11 19 19 SER SER F . n E 1 12 GLY 12 20 20 GLY GLY F . n E 1 13 ASN 13 21 21 ASN ASN F . n E 1 14 ASN 14 22 22 ASN ASN F . n E 1 15 PHE 15 23 23 PHE PHE F . n E 1 16 GLY 16 24 24 GLY GLY F . n E 1 17 ALA 17 25 25 ALA ALA F . n E 1 18 ILE 18 26 26 ILE ILE F . n E 1 19 LEU 19 27 27 LEU LEU F . n E 1 20 SER 20 28 28 SER SER F . n E 1 21 SER 21 29 29 SER SER F . n E 1 22 THR 22 30 30 THR THR F . n E 1 23 ASN 23 31 31 ASN ASN F . n E 1 24 VAL 24 32 32 VAL VAL F . n E 1 25 GLY 25 33 33 GLY GLY F . n E 1 26 SER 26 34 34 SER SER F . n E 1 27 ASN 27 35 35 ASN ASN F . n E 1 28 THR 28 36 36 THR THR F . n E 1 29 TYR 29 37 37 TYR TYR F . n E 1 30 NH2 30 38 38 NH2 NH2 F . n F 1 1 THR 1 9 ? ? ? G . n F 1 2 GLN 2 10 ? ? ? G . n F 1 3 ARG 3 11 ? ? ? G . n F 1 4 LEU 4 12 ? ? ? G . n F 1 5 ALA 5 13 13 ALA ALA G . n F 1 6 ASN 6 14 14 ASN ASN G . n F 1 7 PHE 7 15 15 PHE PHE G . n F 1 8 LEU 8 16 16 LEU LEU G . n F 1 9 VAL 9 17 17 VAL VAL G . n F 1 10 HIS 10 18 18 HIS HIS G . n F 1 11 SER 11 19 19 SER SER G . n F 1 12 GLY 12 20 20 GLY GLY G . n F 1 13 ASN 13 21 21 ASN ASN G . n F 1 14 ASN 14 22 22 ASN ASN G . n F 1 15 PHE 15 23 23 PHE PHE G . n F 1 16 GLY 16 24 24 GLY GLY G . n F 1 17 ALA 17 25 25 ALA ALA G . n F 1 18 ILE 18 26 26 ILE ILE G . n F 1 19 LEU 19 27 27 LEU LEU G . n F 1 20 SER 20 28 28 SER SER G . n F 1 21 SER 21 29 29 SER SER G . n F 1 22 THR 22 30 30 THR THR G . n F 1 23 ASN 23 31 31 ASN ASN G . n F 1 24 VAL 24 32 32 VAL VAL G . n F 1 25 GLY 25 33 33 GLY GLY G . n F 1 26 SER 26 34 34 SER SER G . n F 1 27 ASN 27 35 35 ASN ASN G . n F 1 28 THR 28 36 36 THR THR G . n F 1 29 TYR 29 37 37 TYR TYR G . n F 1 30 NH2 30 38 38 NH2 NH2 G . n G 1 1 THR 1 9 9 THR THR I . n G 1 2 GLN 2 10 10 GLN GLN I . n G 1 3 ARG 3 11 11 ARG ARG I . n G 1 4 LEU 4 12 12 LEU LEU I . n G 1 5 ALA 5 13 13 ALA ALA I . n G 1 6 ASN 6 14 14 ASN ASN I . n G 1 7 PHE 7 15 15 PHE PHE I . n G 1 8 LEU 8 16 16 LEU LEU I . n G 1 9 VAL 9 17 17 VAL VAL I . n G 1 10 HIS 10 18 18 HIS HIS I . n G 1 11 SER 11 19 19 SER SER I . n G 1 12 GLY 12 20 20 GLY GLY I . n G 1 13 ASN 13 21 21 ASN ASN I . n G 1 14 ASN 14 22 22 ASN ASN I . n G 1 15 PHE 15 23 23 PHE PHE I . n G 1 16 GLY 16 24 24 GLY GLY I . n G 1 17 ALA 17 25 25 ALA ALA I . n G 1 18 ILE 18 26 26 ILE ILE I . n G 1 19 LEU 19 27 27 LEU LEU I . n G 1 20 SER 20 28 28 SER SER I . n G 1 21 SER 21 29 29 SER SER I . n G 1 22 THR 22 30 30 THR THR I . n G 1 23 ASN 23 31 31 ASN ASN I . n G 1 24 VAL 24 32 32 VAL VAL I . n G 1 25 GLY 25 33 33 GLY GLY I . n G 1 26 SER 26 34 34 SER SER I . n G 1 27 ASN 27 35 35 ASN ASN I . n G 1 28 THR 28 36 36 THR THR I . n G 1 29 TYR 29 37 37 TYR TYR I . n G 1 30 NH2 30 38 38 NH2 NH2 I . n H 1 1 THR 1 9 9 THR THR J . n H 1 2 GLN 2 10 10 GLN GLN J . n H 1 3 ARG 3 11 11 ARG ARG J . n H 1 4 LEU 4 12 12 LEU LEU J . n H 1 5 ALA 5 13 13 ALA ALA J . n H 1 6 ASN 6 14 14 ASN ASN J . n H 1 7 PHE 7 15 15 PHE PHE J . n H 1 8 LEU 8 16 16 LEU LEU J . n H 1 9 VAL 9 17 17 VAL VAL J . n H 1 10 HIS 10 18 18 HIS HIS J . n H 1 11 SER 11 19 19 SER SER J . n H 1 12 GLY 12 20 20 GLY GLY J . n H 1 13 ASN 13 21 21 ASN ASN J . n H 1 14 ASN 14 22 22 ASN ASN J . n H 1 15 PHE 15 23 23 PHE PHE J . n H 1 16 GLY 16 24 24 GLY GLY J . n H 1 17 ALA 17 25 25 ALA ALA J . n H 1 18 ILE 18 26 26 ILE ILE J . n H 1 19 LEU 19 27 27 LEU LEU J . n H 1 20 SER 20 28 28 SER SER J . n H 1 21 SER 21 29 29 SER SER J . n H 1 22 THR 22 30 30 THR THR J . n H 1 23 ASN 23 31 31 ASN ASN J . n H 1 24 VAL 24 32 32 VAL VAL J . n H 1 25 GLY 25 33 33 GLY GLY J . n H 1 26 SER 26 34 34 SER SER J . n H 1 27 ASN 27 35 35 ASN ASN J . n H 1 28 THR 28 36 36 THR THR J . n H 1 29 TYR 29 37 37 TYR TYR J . n H 1 30 NH2 30 38 38 NH2 NH2 J . n I 1 1 THR 1 9 ? ? ? K . n I 1 2 GLN 2 10 ? ? ? K . n I 1 3 ARG 3 11 ? ? ? K . n I 1 4 LEU 4 12 ? ? ? K . n I 1 5 ALA 5 13 13 ALA ALA K . n I 1 6 ASN 6 14 14 ASN ASN K . n I 1 7 PHE 7 15 15 PHE PHE K . n I 1 8 LEU 8 16 16 LEU LEU K . n I 1 9 VAL 9 17 17 VAL VAL K . n I 1 10 HIS 10 18 18 HIS HIS K . n I 1 11 SER 11 19 19 SER SER K . n I 1 12 GLY 12 20 20 GLY GLY K . n I 1 13 ASN 13 21 21 ASN ASN K . n I 1 14 ASN 14 22 22 ASN ASN K . n I 1 15 PHE 15 23 23 PHE PHE K . n I 1 16 GLY 16 24 24 GLY GLY K . n I 1 17 ALA 17 25 25 ALA ALA K . n I 1 18 ILE 18 26 26 ILE ILE K . n I 1 19 LEU 19 27 27 LEU LEU K . n I 1 20 SER 20 28 28 SER SER K . n I 1 21 SER 21 29 29 SER SER K . n I 1 22 THR 22 30 30 THR THR K . n I 1 23 ASN 23 31 31 ASN ASN K . n I 1 24 VAL 24 32 32 VAL VAL K . n I 1 25 GLY 25 33 33 GLY GLY K . n I 1 26 SER 26 34 34 SER SER K . n I 1 27 ASN 27 35 35 ASN ASN K . n I 1 28 THR 28 36 36 THR THR K . n I 1 29 TYR 29 37 37 TYR TYR K . n I 1 30 NH2 30 38 38 NH2 NH2 K . n J 1 1 THR 1 9 9 THR THR M . n J 1 2 GLN 2 10 10 GLN GLN M . n J 1 3 ARG 3 11 11 ARG ARG M . n J 1 4 LEU 4 12 12 LEU LEU M . n J 1 5 ALA 5 13 13 ALA ALA M . n J 1 6 ASN 6 14 14 ASN ASN M . n J 1 7 PHE 7 15 15 PHE PHE M . n J 1 8 LEU 8 16 16 LEU LEU M . n J 1 9 VAL 9 17 17 VAL VAL M . n J 1 10 HIS 10 18 18 HIS HIS M . n J 1 11 SER 11 19 19 SER SER M . n J 1 12 GLY 12 20 20 GLY GLY M . n J 1 13 ASN 13 21 21 ASN ASN M . n J 1 14 ASN 14 22 22 ASN ASN M . n J 1 15 PHE 15 23 23 PHE PHE M . n J 1 16 GLY 16 24 24 GLY GLY M . n J 1 17 ALA 17 25 25 ALA ALA M . n J 1 18 ILE 18 26 26 ILE ILE M . n J 1 19 LEU 19 27 27 LEU LEU M . n J 1 20 SER 20 28 28 SER SER M . n J 1 21 SER 21 29 29 SER SER M . n J 1 22 THR 22 30 30 THR THR M . n J 1 23 ASN 23 31 31 ASN ASN M . n J 1 24 VAL 24 32 32 VAL VAL M . n J 1 25 GLY 25 33 33 GLY GLY M . n J 1 26 SER 26 34 34 SER SER M . n J 1 27 ASN 27 35 35 ASN ASN M . n J 1 28 THR 28 36 36 THR THR M . n J 1 29 TYR 29 37 37 TYR TYR M . n J 1 30 NH2 30 38 38 NH2 NH2 M . n K 1 1 THR 1 9 9 THR THR N . n K 1 2 GLN 2 10 10 GLN GLN N . n K 1 3 ARG 3 11 11 ARG ARG N . n K 1 4 LEU 4 12 12 LEU LEU N . n K 1 5 ALA 5 13 13 ALA ALA N . n K 1 6 ASN 6 14 14 ASN ASN N . n K 1 7 PHE 7 15 15 PHE PHE N . n K 1 8 LEU 8 16 16 LEU LEU N . n K 1 9 VAL 9 17 17 VAL VAL N . n K 1 10 HIS 10 18 18 HIS HIS N . n K 1 11 SER 11 19 19 SER SER N . n K 1 12 GLY 12 20 20 GLY GLY N . n K 1 13 ASN 13 21 21 ASN ASN N . n K 1 14 ASN 14 22 22 ASN ASN N . n K 1 15 PHE 15 23 23 PHE PHE N . n K 1 16 GLY 16 24 24 GLY GLY N . n K 1 17 ALA 17 25 25 ALA ALA N . n K 1 18 ILE 18 26 26 ILE ILE N . n K 1 19 LEU 19 27 27 LEU LEU N . n K 1 20 SER 20 28 28 SER SER N . n K 1 21 SER 21 29 29 SER SER N . n K 1 22 THR 22 30 30 THR THR N . n K 1 23 ASN 23 31 31 ASN ASN N . n K 1 24 VAL 24 32 32 VAL VAL N . n K 1 25 GLY 25 33 33 GLY GLY N . n K 1 26 SER 26 34 34 SER SER N . n K 1 27 ASN 27 35 35 ASN ASN N . n K 1 28 THR 28 36 36 THR THR N . n K 1 29 TYR 29 37 37 TYR TYR N . n K 1 30 NH2 30 38 38 NH2 NH2 N . n L 1 1 THR 1 9 ? ? ? O . n L 1 2 GLN 2 10 ? ? ? O . n L 1 3 ARG 3 11 ? ? ? O . n L 1 4 LEU 4 12 ? ? ? O . n L 1 5 ALA 5 13 13 ALA ALA O . n L 1 6 ASN 6 14 14 ASN ASN O . n L 1 7 PHE 7 15 15 PHE PHE O . n L 1 8 LEU 8 16 16 LEU LEU O . n L 1 9 VAL 9 17 17 VAL VAL O . n L 1 10 HIS 10 18 18 HIS HIS O . n L 1 11 SER 11 19 19 SER SER O . n L 1 12 GLY 12 20 20 GLY GLY O . n L 1 13 ASN 13 21 21 ASN ASN O . n L 1 14 ASN 14 22 22 ASN ASN O . n L 1 15 PHE 15 23 23 PHE PHE O . n L 1 16 GLY 16 24 24 GLY GLY O . n L 1 17 ALA 17 25 25 ALA ALA O . n L 1 18 ILE 18 26 26 ILE ILE O . n L 1 19 LEU 19 27 27 LEU LEU O . n L 1 20 SER 20 28 28 SER SER O . n L 1 21 SER 21 29 29 SER SER O . n L 1 22 THR 22 30 30 THR THR O . n L 1 23 ASN 23 31 31 ASN ASN O . n L 1 24 VAL 24 32 32 VAL VAL O . n L 1 25 GLY 25 33 33 GLY GLY O . n L 1 26 SER 26 34 34 SER SER O . n L 1 27 ASN 27 35 35 ASN ASN O . n L 1 28 THR 28 36 36 THR THR O . n L 1 29 TYR 29 37 37 TYR TYR O . n L 1 30 NH2 30 38 38 NH2 NH2 O . n M 1 1 THR 1 9 9 THR THR Q . n M 1 2 GLN 2 10 10 GLN GLN Q . n M 1 3 ARG 3 11 11 ARG ARG Q . n M 1 4 LEU 4 12 12 LEU LEU Q . n M 1 5 ALA 5 13 13 ALA ALA Q . n M 1 6 ASN 6 14 14 ASN ASN Q . n M 1 7 PHE 7 15 15 PHE PHE Q . n M 1 8 LEU 8 16 16 LEU LEU Q . n M 1 9 VAL 9 17 17 VAL VAL Q . n M 1 10 HIS 10 18 18 HIS HIS Q . n M 1 11 SER 11 19 19 SER SER Q . n M 1 12 GLY 12 20 20 GLY GLY Q . n M 1 13 ASN 13 21 21 ASN ASN Q . n M 1 14 ASN 14 22 22 ASN ASN Q . n M 1 15 PHE 15 23 23 PHE PHE Q . n M 1 16 GLY 16 24 24 GLY GLY Q . n M 1 17 ALA 17 25 25 ALA ALA Q . n M 1 18 ILE 18 26 26 ILE ILE Q . n M 1 19 LEU 19 27 27 LEU LEU Q . n M 1 20 SER 20 28 28 SER SER Q . n M 1 21 SER 21 29 29 SER SER Q . n M 1 22 THR 22 30 30 THR THR Q . n M 1 23 ASN 23 31 31 ASN ASN Q . n M 1 24 VAL 24 32 32 VAL VAL Q . n M 1 25 GLY 25 33 33 GLY GLY Q . n M 1 26 SER 26 34 34 SER SER Q . n M 1 27 ASN 27 35 35 ASN ASN Q . n M 1 28 THR 28 36 36 THR THR Q . n M 1 29 TYR 29 37 37 TYR TYR Q . n M 1 30 NH2 30 38 38 NH2 NH2 Q . n N 1 1 THR 1 9 9 THR THR R . n N 1 2 GLN 2 10 10 GLN GLN R . n N 1 3 ARG 3 11 11 ARG ARG R . n N 1 4 LEU 4 12 12 LEU LEU R . n N 1 5 ALA 5 13 13 ALA ALA R . n N 1 6 ASN 6 14 14 ASN ASN R . n N 1 7 PHE 7 15 15 PHE PHE R . n N 1 8 LEU 8 16 16 LEU LEU R . n N 1 9 VAL 9 17 17 VAL VAL R . n N 1 10 HIS 10 18 18 HIS HIS R . n N 1 11 SER 11 19 19 SER SER R . n N 1 12 GLY 12 20 20 GLY GLY R . n N 1 13 ASN 13 21 21 ASN ASN R . n N 1 14 ASN 14 22 22 ASN ASN R . n N 1 15 PHE 15 23 23 PHE PHE R . n N 1 16 GLY 16 24 24 GLY GLY R . n N 1 17 ALA 17 25 25 ALA ALA R . n N 1 18 ILE 18 26 26 ILE ILE R . n N 1 19 LEU 19 27 27 LEU LEU R . n N 1 20 SER 20 28 28 SER SER R . n N 1 21 SER 21 29 29 SER SER R . n N 1 22 THR 22 30 30 THR THR R . n N 1 23 ASN 23 31 31 ASN ASN R . n N 1 24 VAL 24 32 32 VAL VAL R . n N 1 25 GLY 25 33 33 GLY GLY R . n N 1 26 SER 26 34 34 SER SER R . n N 1 27 ASN 27 35 35 ASN ASN R . n N 1 28 THR 28 36 36 THR THR R . n N 1 29 TYR 29 37 37 TYR TYR R . n N 1 30 NH2 30 38 38 NH2 NH2 R . n O 1 1 THR 1 9 ? ? ? S . n O 1 2 GLN 2 10 ? ? ? S . n O 1 3 ARG 3 11 ? ? ? S . n O 1 4 LEU 4 12 ? ? ? S . n O 1 5 ALA 5 13 13 ALA ALA S . n O 1 6 ASN 6 14 14 ASN ASN S . n O 1 7 PHE 7 15 15 PHE PHE S . n O 1 8 LEU 8 16 16 LEU LEU S . n O 1 9 VAL 9 17 17 VAL VAL S . n O 1 10 HIS 10 18 18 HIS HIS S . n O 1 11 SER 11 19 19 SER SER S . n O 1 12 GLY 12 20 20 GLY GLY S . n O 1 13 ASN 13 21 21 ASN ASN S . n O 1 14 ASN 14 22 22 ASN ASN S . n O 1 15 PHE 15 23 23 PHE PHE S . n O 1 16 GLY 16 24 24 GLY GLY S . n O 1 17 ALA 17 25 25 ALA ALA S . n O 1 18 ILE 18 26 26 ILE ILE S . n O 1 19 LEU 19 27 27 LEU LEU S . n O 1 20 SER 20 28 28 SER SER S . n O 1 21 SER 21 29 29 SER SER S . n O 1 22 THR 22 30 30 THR THR S . n O 1 23 ASN 23 31 31 ASN ASN S . n O 1 24 VAL 24 32 32 VAL VAL S . n O 1 25 GLY 25 33 33 GLY GLY S . n O 1 26 SER 26 34 34 SER SER S . n O 1 27 ASN 27 35 35 ASN ASN S . n O 1 28 THR 28 36 36 THR THR S . n O 1 29 TYR 29 37 37 TYR TYR S . n O 1 30 NH2 30 38 38 NH2 NH2 S . n # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 29HQ _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 29HQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 29HQ _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 29HQ _struct.title 'IAPP S20G growth-phase fibril polymorph 3PF-LJ' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 29HQ _struct_keywords.text 'Amyloid, filament, STRUCTURAL PROTEIN' _struct_keywords.pdbx_keywords 'STRUCTURAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 1 ? H N N 1 ? I N N 1 ? J N N 1 ? K N N 1 ? L N N 1 ? M N N 1 ? N N N 1 ? O N N 1 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code IAPP_HUMAN _struct_ref.pdbx_db_accession P10997 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code TQRLANFLVHSSNNFGAILSSTNVGSNTY _struct_ref.pdbx_align_begin 42 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 29HQ A 1 ? 29 ? P10997 42 ? 70 ? 9 37 2 1 29HQ B 1 ? 29 ? P10997 42 ? 70 ? 9 37 3 1 29HQ C 1 ? 29 ? P10997 42 ? 70 ? 9 37 4 1 29HQ E 1 ? 29 ? P10997 42 ? 70 ? 9 37 5 1 29HQ F 1 ? 29 ? P10997 42 ? 70 ? 9 37 6 1 29HQ G 1 ? 29 ? P10997 42 ? 70 ? 9 37 7 1 29HQ I 1 ? 29 ? P10997 42 ? 70 ? 9 37 8 1 29HQ J 1 ? 29 ? P10997 42 ? 70 ? 9 37 9 1 29HQ K 1 ? 29 ? P10997 42 ? 70 ? 9 37 10 1 29HQ M 1 ? 29 ? P10997 42 ? 70 ? 9 37 11 1 29HQ N 1 ? 29 ? P10997 42 ? 70 ? 9 37 12 1 29HQ O 1 ? 29 ? P10997 42 ? 70 ? 9 37 13 1 29HQ Q 1 ? 29 ? P10997 42 ? 70 ? 9 37 14 1 29HQ R 1 ? 29 ? P10997 42 ? 70 ? 9 37 15 1 29HQ S 1 ? 29 ? P10997 42 ? 70 ? 9 37 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 29HQ GLY A 12 ? UNP P10997 SER 53 variant 20 1 1 29HQ NH2 A 30 ? UNP P10997 ? ? amidation 38 2 2 29HQ GLY B 12 ? UNP P10997 SER 53 variant 20 3 2 29HQ NH2 B 30 ? UNP P10997 ? ? amidation 38 4 3 29HQ GLY C 12 ? UNP P10997 SER 53 variant 20 5 3 29HQ NH2 C 30 ? UNP P10997 ? ? amidation 38 6 4 29HQ GLY E 12 ? UNP P10997 SER 53 variant 20 7 4 29HQ NH2 E 30 ? UNP P10997 ? ? amidation 38 8 5 29HQ GLY F 12 ? UNP P10997 SER 53 variant 20 9 5 29HQ NH2 F 30 ? UNP P10997 ? ? amidation 38 10 6 29HQ GLY G 12 ? UNP P10997 SER 53 variant 20 11 6 29HQ NH2 G 30 ? UNP P10997 ? ? amidation 38 12 7 29HQ GLY I 12 ? UNP P10997 SER 53 variant 20 13 7 29HQ NH2 I 30 ? UNP P10997 ? ? amidation 38 14 8 29HQ GLY J 12 ? UNP P10997 SER 53 variant 20 15 8 29HQ NH2 J 30 ? UNP P10997 ? ? amidation 38 16 9 29HQ GLY K 12 ? UNP P10997 SER 53 variant 20 17 9 29HQ NH2 K 30 ? UNP P10997 ? ? amidation 38 18 10 29HQ GLY M 12 ? UNP P10997 SER 53 variant 20 19 10 29HQ NH2 M 30 ? UNP P10997 ? ? amidation 38 20 11 29HQ GLY N 12 ? UNP P10997 SER 53 variant 20 21 11 29HQ NH2 N 30 ? UNP P10997 ? ? amidation 38 22 12 29HQ GLY O 12 ? UNP P10997 SER 53 variant 20 23 12 29HQ NH2 O 30 ? UNP P10997 ? ? amidation 38 24 13 29HQ GLY Q 12 ? UNP P10997 SER 53 variant 20 25 13 29HQ NH2 Q 30 ? UNP P10997 ? ? amidation 38 26 14 29HQ GLY R 12 ? UNP P10997 SER 53 variant 20 27 14 29HQ NH2 R 30 ? UNP P10997 ? ? amidation 38 28 15 29HQ GLY S 12 ? UNP P10997 SER 53 variant 20 29 15 29HQ NH2 S 30 ? UNP P10997 ? ? amidation 38 30 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 15-meric _pdbx_struct_assembly.oligomeric_count 15 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0 _pdbx_struct_oper_list.matrix[1][2] 0.0 _pdbx_struct_oper_list.matrix[1][3] 0.0 _pdbx_struct_oper_list.vector[1] 0.0 _pdbx_struct_oper_list.matrix[2][1] 0.0 _pdbx_struct_oper_list.matrix[2][2] 1.0 _pdbx_struct_oper_list.matrix[2][3] 0.0 _pdbx_struct_oper_list.vector[2] 0.0 _pdbx_struct_oper_list.matrix[3][1] 0.0 _pdbx_struct_oper_list.matrix[3][2] 0.0 _pdbx_struct_oper_list.matrix[3][3] 1.0 _pdbx_struct_oper_list.vector[3] 0.0 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A TYR 29 C ? ? ? 1_555 A NH2 30 N ? ? A TYR 37 A NH2 38 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale2 covale both ? B TYR 29 C ? ? ? 1_555 B NH2 30 N ? ? B TYR 37 B NH2 38 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale3 covale both ? C TYR 29 C ? ? ? 1_555 C NH2 30 N ? ? C TYR 37 C NH2 38 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale4 covale both ? D TYR 29 C ? ? ? 1_555 D NH2 30 N ? ? E TYR 37 E NH2 38 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale5 covale both ? E TYR 29 C ? ? ? 1_555 E NH2 30 N ? ? F TYR 37 F NH2 38 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale6 covale both ? F TYR 29 C ? ? ? 1_555 F NH2 30 N ? ? G TYR 37 G NH2 38 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale7 covale both ? G TYR 29 C ? ? ? 1_555 G NH2 30 N ? ? I TYR 37 I NH2 38 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale8 covale both ? H TYR 29 C ? ? ? 1_555 H NH2 30 N ? ? J TYR 37 J NH2 38 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale9 covale both ? I TYR 29 C ? ? ? 1_555 I NH2 30 N ? ? K TYR 37 K NH2 38 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale10 covale both ? J TYR 29 C ? ? ? 1_555 J NH2 30 N ? ? M TYR 37 M NH2 38 1_555 ? ? ? ? ? ? ? 1.320 ? ? covale11 covale both ? K TYR 29 C ? ? ? 1_555 K NH2 30 N ? ? N TYR 37 N NH2 38 1_555 ? ? ? ? ? ? ? 1.320 ? ? covale12 covale both ? L TYR 29 C ? ? ? 1_555 L NH2 30 N ? ? O TYR 37 O NH2 38 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale13 covale both ? M TYR 29 C ? ? ? 1_555 M NH2 30 N ? ? Q TYR 37 Q NH2 38 1_555 ? ? ? ? ? ? ? 1.320 ? ? covale14 covale both ? N TYR 29 C ? ? ? 1_555 N NH2 30 N ? ? R TYR 37 R NH2 38 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale15 covale both ? O TYR 29 C ? ? ? 1_555 O NH2 30 N ? ? S TYR 37 S NH2 38 1_555 ? ? ? ? ? ? ? 1.322 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 NH2 A 30 ? TYR A 29 ? NH2 A 38 ? 1_555 TYR A 37 ? 1_555 . . TYR 5 NH2 None 'Terminal amidation' 2 NH2 B 30 ? TYR B 29 ? NH2 B 38 ? 1_555 TYR B 37 ? 1_555 . . TYR 5 NH2 None 'Terminal amidation' 3 NH2 C 30 ? TYR C 29 ? NH2 C 38 ? 1_555 TYR C 37 ? 1_555 . . TYR 5 NH2 None 'Terminal amidation' 4 NH2 D 30 ? TYR D 29 ? NH2 E 38 ? 1_555 TYR E 37 ? 1_555 . . TYR 5 NH2 None 'Terminal amidation' 5 NH2 E 30 ? TYR E 29 ? NH2 F 38 ? 1_555 TYR F 37 ? 1_555 . . TYR 5 NH2 None 'Terminal amidation' 6 NH2 F 30 ? TYR F 29 ? NH2 G 38 ? 1_555 TYR G 37 ? 1_555 . . TYR 5 NH2 None 'Terminal amidation' 7 NH2 G 30 ? TYR G 29 ? NH2 I 38 ? 1_555 TYR I 37 ? 1_555 . . TYR 5 NH2 None 'Terminal amidation' 8 NH2 H 30 ? TYR H 29 ? NH2 J 38 ? 1_555 TYR J 37 ? 1_555 . . TYR 5 NH2 None 'Terminal amidation' 9 NH2 I 30 ? TYR I 29 ? NH2 K 38 ? 1_555 TYR K 37 ? 1_555 . . TYR 5 NH2 None 'Terminal amidation' 10 NH2 J 30 ? TYR J 29 ? NH2 M 38 ? 1_555 TYR M 37 ? 1_555 . . TYR 5 NH2 None 'Terminal amidation' 11 NH2 K 30 ? TYR K 29 ? NH2 N 38 ? 1_555 TYR N 37 ? 1_555 . . TYR 5 NH2 None 'Terminal amidation' 12 NH2 L 30 ? TYR L 29 ? NH2 O 38 ? 1_555 TYR O 37 ? 1_555 . . TYR 5 NH2 None 'Terminal amidation' 13 NH2 M 30 ? TYR M 29 ? NH2 Q 38 ? 1_555 TYR Q 37 ? 1_555 . . TYR 5 NH2 None 'Terminal amidation' 14 NH2 N 30 ? TYR N 29 ? NH2 R 38 ? 1_555 TYR R 37 ? 1_555 . . TYR 5 NH2 None 'Terminal amidation' 15 NH2 O 30 ? TYR O 29 ? NH2 S 38 ? 1_555 TYR S 37 ? 1_555 . . TYR 5 NH2 None 'Terminal amidation' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 5 ? AA2 ? 5 ? AA3 ? 5 ? AA4 ? 5 ? AA5 ? 5 ? AA6 ? 5 ? AA7 ? 5 ? AA8 ? 5 ? AA9 ? 5 ? AB1 ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA1 3 4 ? parallel AA1 4 5 ? parallel AA2 1 2 ? parallel AA2 2 3 ? parallel AA2 3 4 ? parallel AA2 4 5 ? parallel AA3 1 2 ? parallel AA3 2 3 ? parallel AA3 3 4 ? parallel AA3 4 5 ? parallel AA4 1 2 ? parallel AA4 2 3 ? parallel AA4 3 4 ? parallel AA4 4 5 ? parallel AA5 1 2 ? parallel AA5 2 3 ? parallel AA5 3 4 ? parallel AA5 4 5 ? parallel AA6 1 2 ? parallel AA6 2 3 ? parallel AA6 3 4 ? parallel AA6 4 5 ? parallel AA7 1 2 ? parallel AA7 2 3 ? parallel AA7 3 4 ? parallel AA7 4 5 ? parallel AA8 1 2 ? parallel AA8 2 3 ? parallel AA8 3 4 ? parallel AA8 4 5 ? parallel AA9 1 2 ? parallel AA9 2 3 ? parallel AA9 3 4 ? parallel AA9 4 5 ? parallel AB1 1 2 ? parallel AB1 2 3 ? parallel AB1 3 4 ? parallel AB1 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 GLN A 2 ? ASN A 14 ? GLN A 10 ASN A 22 AA1 2 GLN D 2 ? ASN D 14 ? GLN E 10 ASN E 22 AA1 3 GLN G 2 ? ASN G 14 ? GLN I 10 ASN I 22 AA1 4 GLN J 2 ? ASN J 14 ? GLN M 10 ASN M 22 AA1 5 GLN M 2 ? ASN M 14 ? GLN Q 10 ASN Q 22 AA2 1 ALA A 17 ? ILE A 18 ? ALA A 25 ILE A 26 AA2 2 ALA D 17 ? ILE D 18 ? ALA E 25 ILE E 26 AA2 3 ALA G 17 ? ILE G 18 ? ALA I 25 ILE I 26 AA2 4 ALA J 17 ? ILE J 18 ? ALA M 25 ILE M 26 AA2 5 ALA M 17 ? ILE M 18 ? ALA Q 25 ILE Q 26 AA3 1 SER A 21 ? VAL A 24 ? SER A 29 VAL A 32 AA3 2 SER D 21 ? VAL D 24 ? SER E 29 VAL E 32 AA3 3 SER G 21 ? VAL G 24 ? SER I 29 VAL I 32 AA3 4 SER J 21 ? VAL J 24 ? SER M 29 VAL M 32 AA3 5 SER M 21 ? VAL M 24 ? SER Q 29 VAL Q 32 AA4 1 GLN B 2 ? ASN B 14 ? GLN B 10 ASN B 22 AA4 2 GLN E 2 ? ASN E 14 ? GLN F 10 ASN F 22 AA4 3 GLN H 2 ? ASN H 14 ? GLN J 10 ASN J 22 AA4 4 GLN K 2 ? ASN K 14 ? GLN N 10 ASN N 22 AA4 5 GLN N 2 ? ASN N 14 ? GLN R 10 ASN R 22 AA5 1 ALA B 17 ? ILE B 18 ? ALA B 25 ILE B 26 AA5 2 ALA E 17 ? ILE E 18 ? ALA F 25 ILE F 26 AA5 3 ALA H 17 ? ILE H 18 ? ALA J 25 ILE J 26 AA5 4 ALA K 17 ? ILE K 18 ? ALA N 25 ILE N 26 AA5 5 ALA N 17 ? ILE N 18 ? ALA R 25 ILE R 26 AA6 1 SER B 21 ? VAL B 24 ? SER B 29 VAL B 32 AA6 2 SER E 21 ? VAL E 24 ? SER F 29 VAL F 32 AA6 3 SER H 21 ? VAL H 24 ? SER J 29 VAL J 32 AA6 4 SER K 21 ? VAL K 24 ? SER N 29 VAL N 32 AA6 5 SER N 21 ? VAL N 24 ? SER R 29 VAL R 32 AA7 1 PHE C 7 ? HIS C 10 ? PHE C 15 HIS C 18 AA7 2 ASN F 6 ? HIS F 10 ? ASN G 14 HIS G 18 AA7 3 ASN I 6 ? HIS I 10 ? ASN K 14 HIS K 18 AA7 4 ASN L 6 ? HIS L 10 ? ASN O 14 HIS O 18 AA7 5 ASN O 6 ? HIS O 10 ? ASN S 14 HIS S 18 AA8 1 ASN C 13 ? LEU C 19 ? ASN C 21 LEU C 27 AA8 2 ASN F 13 ? LEU F 19 ? ASN G 21 LEU G 27 AA8 3 ASN I 13 ? LEU I 19 ? ASN K 21 LEU K 27 AA8 4 ASN L 13 ? LEU L 19 ? ASN O 21 LEU O 27 AA8 5 ASN O 13 ? LEU O 19 ? ASN S 21 LEU S 27 AA9 1 THR C 22 ? VAL C 24 ? THR C 30 VAL C 32 AA9 2 THR F 22 ? VAL F 24 ? THR G 30 VAL G 32 AA9 3 THR I 22 ? VAL I 24 ? THR K 30 VAL K 32 AA9 4 THR L 22 ? VAL L 24 ? THR O 30 VAL O 32 AA9 5 THR O 22 ? VAL O 24 ? THR S 30 VAL S 32 AB1 1 ASN C 27 ? THR C 28 ? ASN C 35 THR C 36 AB1 2 ASN F 27 ? THR F 28 ? ASN G 35 THR G 36 AB1 3 ASN I 27 ? THR I 28 ? ASN K 35 THR K 36 AB1 4 ASN L 27 ? THR L 28 ? ASN O 35 THR O 36 AB1 5 ASN O 27 ? THR O 28 ? ASN S 35 THR S 36 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N PHE A 7 ? N PHE A 15 O ASN D 6 ? O ASN E 14 AA1 2 3 N PHE D 7 ? N PHE E 15 O ASN G 6 ? O ASN I 14 AA1 3 4 N PHE G 7 ? N PHE I 15 O ASN J 6 ? O ASN M 14 AA1 4 5 N PHE J 7 ? N PHE M 15 O ASN M 6 ? O ASN Q 14 AA2 1 2 N ILE A 18 ? N ILE A 26 O ALA D 17 ? O ALA E 25 AA2 2 3 N ILE D 18 ? N ILE E 26 O ALA G 17 ? O ALA I 25 AA2 3 4 N ILE G 18 ? N ILE I 26 O ALA J 17 ? O ALA M 25 AA2 4 5 N ILE J 18 ? N ILE M 26 O ALA M 17 ? O ALA Q 25 AA3 1 2 N ASN A 23 ? N ASN A 31 O THR D 22 ? O THR E 30 AA3 2 3 N SER D 21 ? N SER E 29 O THR G 22 ? O THR I 30 AA3 3 4 N SER G 21 ? N SER I 29 O THR J 22 ? O THR M 30 AA3 4 5 N SER J 21 ? N SER M 29 O THR M 22 ? O THR Q 30 AA4 1 2 N PHE B 7 ? N PHE B 15 O ASN E 6 ? O ASN F 14 AA4 2 3 N PHE E 7 ? N PHE F 15 O ASN H 6 ? O ASN J 14 AA4 3 4 N PHE H 7 ? N PHE J 15 O ASN K 6 ? O ASN N 14 AA4 4 5 N PHE K 7 ? N PHE N 15 O ASN N 6 ? O ASN R 14 AA5 1 2 N ILE B 18 ? N ILE B 26 O ALA E 17 ? O ALA F 25 AA5 2 3 N ILE E 18 ? N ILE F 26 O ALA H 17 ? O ALA J 25 AA5 3 4 N ILE H 18 ? N ILE J 26 O ALA K 17 ? O ALA N 25 AA5 4 5 N ILE K 18 ? N ILE N 26 O ALA N 17 ? O ALA R 25 AA6 1 2 N ASN B 23 ? N ASN B 31 O THR E 22 ? O THR F 30 AA6 2 3 N ASN E 23 ? N ASN F 31 O THR H 22 ? O THR J 30 AA6 3 4 N SER H 21 ? N SER J 29 O THR K 22 ? O THR N 30 AA6 4 5 N SER K 21 ? N SER N 29 O THR N 22 ? O THR R 30 AA7 1 2 N LEU C 8 ? N LEU C 16 O VAL F 9 ? O VAL G 17 AA7 2 3 N LEU F 8 ? N LEU G 16 O VAL I 9 ? O VAL K 17 AA7 3 4 N LEU I 8 ? N LEU K 16 O VAL L 9 ? O VAL O 17 AA7 4 5 N LEU L 8 ? N LEU O 16 O VAL O 9 ? O VAL S 17 AA8 1 2 N ILE C 18 ? N ILE C 26 O LEU F 19 ? O LEU G 27 AA8 2 3 N ILE F 18 ? N ILE G 26 O LEU I 19 ? O LEU K 27 AA8 3 4 N ILE I 18 ? N ILE K 26 O LEU L 19 ? O LEU O 27 AA8 4 5 N ILE L 18 ? N ILE O 26 O LEU O 19 ? O LEU S 27 AA9 1 2 N VAL C 24 ? N VAL C 32 O ASN F 23 ? O ASN G 31 AA9 2 3 N ASN F 23 ? N ASN G 31 O THR I 22 ? O THR K 30 AA9 3 4 N ASN I 23 ? N ASN K 31 O THR L 22 ? O THR O 30 AA9 4 5 N ASN L 23 ? N ASN O 31 O THR O 22 ? O THR S 30 AB1 1 2 N ASN C 27 ? N ASN C 35 O THR F 28 ? O THR G 36 AB1 2 3 N ASN F 27 ? N ASN G 35 O THR I 28 ? O THR K 36 AB1 3 4 N ASN I 27 ? N ASN K 35 O THR L 28 ? O THR O 36 AB1 4 5 N ASN L 27 ? N ASN O 35 O THR O 28 ? O THR S 36 # _pdbx_entry_details.entry_id 29HQ _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 34 ? ? 55.46 13.31 2 1 LEU B 27 ? ? 48.52 26.89 3 1 SER B 34 ? ? 55.81 16.21 4 1 SER C 19 ? ? -155.22 15.87 5 1 ASN C 31 ? ? 57.44 71.09 6 1 SER E 34 ? ? 55.09 12.42 7 1 LEU F 27 ? ? 48.88 28.33 8 1 SER F 34 ? ? 55.42 14.05 9 1 SER G 19 ? ? -156.90 14.73 10 1 ASN G 31 ? ? 58.03 71.27 11 1 SER I 34 ? ? 55.96 13.11 12 1 LEU J 27 ? ? 49.29 28.89 13 1 SER J 34 ? ? 55.41 14.28 14 1 SER K 19 ? ? -153.92 15.84 15 1 ASN K 31 ? ? 59.66 72.39 16 1 SER M 34 ? ? 55.85 13.13 17 1 LEU N 27 ? ? 49.29 27.84 18 1 SER N 34 ? ? 55.66 15.42 19 1 SER O 19 ? ? -156.38 15.13 20 1 ASN O 31 ? ? 58.62 72.39 21 1 LEU Q 27 ? ? 49.76 28.81 22 1 SER Q 34 ? ? 54.61 12.18 23 1 LEU R 27 ? ? 49.17 29.86 24 1 SER R 34 ? ? 54.91 15.52 25 1 SER S 19 ? ? -156.86 14.18 26 1 ASN S 31 ? ? 57.70 71.89 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 29HQ _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 29HQ _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3.5 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 7373 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type HELICAL # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 6.5 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source NATURAL _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'Amyloid assembly 6 weeks during growth phase' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 29HQ _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 1000 _em_imaging.nominal_defocus_max 3000 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? _em_imaging.objective_aperture ? _em_imaging.microscope_serial_number ? _em_imaging.microscope_version ? # _em_vitrification.entry_id 29HQ _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 29HQ _em_experiment.id 1 _em_experiment.reconstruction_method HELICAL _em_experiment.aggregation_state FILAMENT _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 C THR 9 ? C THR 1 2 1 Y 1 C GLN 10 ? C GLN 2 3 1 Y 1 C ARG 11 ? C ARG 3 4 1 Y 1 C LEU 12 ? C LEU 4 5 1 Y 1 G THR 9 ? F THR 1 6 1 Y 1 G GLN 10 ? F GLN 2 7 1 Y 1 G ARG 11 ? F ARG 3 8 1 Y 1 G LEU 12 ? F LEU 4 9 1 Y 1 K THR 9 ? I THR 1 10 1 Y 1 K GLN 10 ? I GLN 2 11 1 Y 1 K ARG 11 ? I ARG 3 12 1 Y 1 K LEU 12 ? I LEU 4 13 1 Y 1 O THR 9 ? L THR 1 14 1 Y 1 O GLN 10 ? L GLN 2 15 1 Y 1 O ARG 11 ? L ARG 3 16 1 Y 1 O LEU 12 ? L LEU 4 17 1 Y 1 S THR 9 ? O THR 1 18 1 Y 1 S GLN 10 ? O GLN 2 19 1 Y 1 S ARG 11 ? O ARG 3 20 1 Y 1 S LEU 12 ? O LEU 4 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 GLN N N N N 58 GLN CA C N S 59 GLN C C N N 60 GLN O O N N 61 GLN CB C N N 62 GLN CG C N N 63 GLN CD C N N 64 GLN OE1 O N N 65 GLN NE2 N N N 66 GLN OXT O N N 67 GLN H H N N 68 GLN H2 H N N 69 GLN HA H N N 70 GLN HB2 H N N 71 GLN HB3 H N N 72 GLN HG2 H N N 73 GLN HG3 H N N 74 GLN HE21 H N N 75 GLN HE22 H N N 76 GLN HXT H N N 77 GLY N N N N 78 GLY CA C N N 79 GLY C C N N 80 GLY O O N N 81 GLY OXT O N N 82 GLY H H N N 83 GLY H2 H N N 84 GLY HA2 H N N 85 GLY HA3 H N N 86 GLY HXT H N N 87 HIS N N N N 88 HIS CA C N S 89 HIS C C N N 90 HIS O O N N 91 HIS CB C N N 92 HIS CG C Y N 93 HIS ND1 N Y N 94 HIS CD2 C Y N 95 HIS CE1 C Y N 96 HIS NE2 N Y N 97 HIS OXT O N N 98 HIS H H N N 99 HIS H2 H N N 100 HIS HA H N N 101 HIS HB2 H N N 102 HIS HB3 H N N 103 HIS HD1 H N N 104 HIS HD2 H N N 105 HIS HE1 H N N 106 HIS HE2 H N N 107 HIS HXT H N N 108 ILE N N N N 109 ILE CA C N S 110 ILE C C N N 111 ILE O O N N 112 ILE CB C N S 113 ILE CG1 C N N 114 ILE CG2 C N N 115 ILE CD1 C N N 116 ILE OXT O N N 117 ILE H H N N 118 ILE H2 H N N 119 ILE HA H N N 120 ILE HB H N N 121 ILE HG12 H N N 122 ILE HG13 H N N 123 ILE HG21 H N N 124 ILE HG22 H N N 125 ILE HG23 H N N 126 ILE HD11 H N N 127 ILE HD12 H N N 128 ILE HD13 H N N 129 ILE HXT H N N 130 LEU N N N N 131 LEU CA C N S 132 LEU C C N N 133 LEU O O N N 134 LEU CB C N N 135 LEU CG C N N 136 LEU CD1 C N N 137 LEU CD2 C N N 138 LEU OXT O N N 139 LEU H H N N 140 LEU H2 H N N 141 LEU HA H N N 142 LEU HB2 H N N 143 LEU HB3 H N N 144 LEU HG H N N 145 LEU HD11 H N N 146 LEU HD12 H N N 147 LEU HD13 H N N 148 LEU HD21 H N N 149 LEU HD22 H N N 150 LEU HD23 H N N 151 LEU HXT H N N 152 NH2 N N N N 153 NH2 HN1 H N N 154 NH2 HN2 H N N 155 PHE N N N N 156 PHE CA C N S 157 PHE C C N N 158 PHE O O N N 159 PHE CB C N N 160 PHE CG C Y N 161 PHE CD1 C Y N 162 PHE CD2 C Y N 163 PHE CE1 C Y N 164 PHE CE2 C Y N 165 PHE CZ C Y N 166 PHE OXT O N N 167 PHE H H N N 168 PHE H2 H N N 169 PHE HA H N N 170 PHE HB2 H N N 171 PHE HB3 H N N 172 PHE HD1 H N N 173 PHE HD2 H N N 174 PHE HE1 H N N 175 PHE HE2 H N N 176 PHE HZ H N N 177 PHE HXT H N N 178 SER N N N N 179 SER CA C N S 180 SER C C N N 181 SER O O N N 182 SER CB C N N 183 SER OG O N N 184 SER OXT O N N 185 SER H H N N 186 SER H2 H N N 187 SER HA H N N 188 SER HB2 H N N 189 SER HB3 H N N 190 SER HG H N N 191 SER HXT H N N 192 THR N N N N 193 THR CA C N S 194 THR C C N N 195 THR O O N N 196 THR CB C N R 197 THR OG1 O N N 198 THR CG2 C N N 199 THR OXT O N N 200 THR H H N N 201 THR H2 H N N 202 THR HA H N N 203 THR HB H N N 204 THR HG1 H N N 205 THR HG21 H N N 206 THR HG22 H N N 207 THR HG23 H N N 208 THR HXT H N N 209 TYR N N N N 210 TYR CA C N S 211 TYR C C N N 212 TYR O O N N 213 TYR CB C N N 214 TYR CG C Y N 215 TYR CD1 C Y N 216 TYR CD2 C Y N 217 TYR CE1 C Y N 218 TYR CE2 C Y N 219 TYR CZ C Y N 220 TYR OH O N N 221 TYR OXT O N N 222 TYR H H N N 223 TYR H2 H N N 224 TYR HA H N N 225 TYR HB2 H N N 226 TYR HB3 H N N 227 TYR HD1 H N N 228 TYR HD2 H N N 229 TYR HE1 H N N 230 TYR HE2 H N N 231 TYR HH H N N 232 TYR HXT H N N 233 VAL N N N N 234 VAL CA C N S 235 VAL C C N N 236 VAL O O N N 237 VAL CB C N N 238 VAL CG1 C N N 239 VAL CG2 C N N 240 VAL OXT O N N 241 VAL H H N N 242 VAL H2 H N N 243 VAL HA H N N 244 VAL HB H N N 245 VAL HG11 H N N 246 VAL HG12 H N N 247 VAL HG13 H N N 248 VAL HG21 H N N 249 VAL HG22 H N N 250 VAL HG23 H N N 251 VAL HXT H N N 252 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 GLN N CA sing N N 55 GLN N H sing N N 56 GLN N H2 sing N N 57 GLN CA C sing N N 58 GLN CA CB sing N N 59 GLN CA HA sing N N 60 GLN C O doub N N 61 GLN C OXT sing N N 62 GLN CB CG sing N N 63 GLN CB HB2 sing N N 64 GLN CB HB3 sing N N 65 GLN CG CD sing N N 66 GLN CG HG2 sing N N 67 GLN CG HG3 sing N N 68 GLN CD OE1 doub N N 69 GLN CD NE2 sing N N 70 GLN NE2 HE21 sing N N 71 GLN NE2 HE22 sing N N 72 GLN OXT HXT sing N N 73 GLY N CA sing N N 74 GLY N H sing N N 75 GLY N H2 sing N N 76 GLY CA C sing N N 77 GLY CA HA2 sing N N 78 GLY CA HA3 sing N N 79 GLY C O doub N N 80 GLY C OXT sing N N 81 GLY OXT HXT sing N N 82 HIS N CA sing N N 83 HIS N H sing N N 84 HIS N H2 sing N N 85 HIS CA C sing N N 86 HIS CA CB sing N N 87 HIS CA HA sing N N 88 HIS C O doub N N 89 HIS C OXT sing N N 90 HIS CB CG sing N N 91 HIS CB HB2 sing N N 92 HIS CB HB3 sing N N 93 HIS CG ND1 sing Y N 94 HIS CG CD2 doub Y N 95 HIS ND1 CE1 doub Y N 96 HIS ND1 HD1 sing N N 97 HIS CD2 NE2 sing Y N 98 HIS CD2 HD2 sing N N 99 HIS CE1 NE2 sing Y N 100 HIS CE1 HE1 sing N N 101 HIS NE2 HE2 sing N N 102 HIS OXT HXT sing N N 103 ILE N CA sing N N 104 ILE N H sing N N 105 ILE N H2 sing N N 106 ILE CA C sing N N 107 ILE CA CB sing N N 108 ILE CA HA sing N N 109 ILE C O doub N N 110 ILE C OXT sing N N 111 ILE CB CG1 sing N N 112 ILE CB CG2 sing N N 113 ILE CB HB sing N N 114 ILE CG1 CD1 sing N N 115 ILE CG1 HG12 sing N N 116 ILE CG1 HG13 sing N N 117 ILE CG2 HG21 sing N N 118 ILE CG2 HG22 sing N N 119 ILE CG2 HG23 sing N N 120 ILE CD1 HD11 sing N N 121 ILE CD1 HD12 sing N N 122 ILE CD1 HD13 sing N N 123 ILE OXT HXT sing N N 124 LEU N CA sing N N 125 LEU N H sing N N 126 LEU N H2 sing N N 127 LEU CA C sing N N 128 LEU CA CB sing N N 129 LEU CA HA sing N N 130 LEU C O doub N N 131 LEU C OXT sing N N 132 LEU CB CG sing N N 133 LEU CB HB2 sing N N 134 LEU CB HB3 sing N N 135 LEU CG CD1 sing N N 136 LEU CG CD2 sing N N 137 LEU CG HG sing N N 138 LEU CD1 HD11 sing N N 139 LEU CD1 HD12 sing N N 140 LEU CD1 HD13 sing N N 141 LEU CD2 HD21 sing N N 142 LEU CD2 HD22 sing N N 143 LEU CD2 HD23 sing N N 144 LEU OXT HXT sing N N 145 NH2 N HN1 sing N N 146 NH2 N HN2 sing N N 147 PHE N CA sing N N 148 PHE N H sing N N 149 PHE N H2 sing N N 150 PHE CA C sing N N 151 PHE CA CB sing N N 152 PHE CA HA sing N N 153 PHE C O doub N N 154 PHE C OXT sing N N 155 PHE CB CG sing N N 156 PHE CB HB2 sing N N 157 PHE CB HB3 sing N N 158 PHE CG CD1 doub Y N 159 PHE CG CD2 sing Y N 160 PHE CD1 CE1 sing Y N 161 PHE CD1 HD1 sing N N 162 PHE CD2 CE2 doub Y N 163 PHE CD2 HD2 sing N N 164 PHE CE1 CZ doub Y N 165 PHE CE1 HE1 sing N N 166 PHE CE2 CZ sing Y N 167 PHE CE2 HE2 sing N N 168 PHE CZ HZ sing N N 169 PHE OXT HXT sing N N 170 SER N CA sing N N 171 SER N H sing N N 172 SER N H2 sing N N 173 SER CA C sing N N 174 SER CA CB sing N N 175 SER CA HA sing N N 176 SER C O doub N N 177 SER C OXT sing N N 178 SER CB OG sing N N 179 SER CB HB2 sing N N 180 SER CB HB3 sing N N 181 SER OG HG sing N N 182 SER OXT HXT sing N N 183 THR N CA sing N N 184 THR N H sing N N 185 THR N H2 sing N N 186 THR CA C sing N N 187 THR CA CB sing N N 188 THR CA HA sing N N 189 THR C O doub N N 190 THR C OXT sing N N 191 THR CB OG1 sing N N 192 THR CB CG2 sing N N 193 THR CB HB sing N N 194 THR OG1 HG1 sing N N 195 THR CG2 HG21 sing N N 196 THR CG2 HG22 sing N N 197 THR CG2 HG23 sing N N 198 THR OXT HXT sing N N 199 TYR N CA sing N N 200 TYR N H sing N N 201 TYR N H2 sing N N 202 TYR CA C sing N N 203 TYR CA CB sing N N 204 TYR CA HA sing N N 205 TYR C O doub N N 206 TYR C OXT sing N N 207 TYR CB CG sing N N 208 TYR CB HB2 sing N N 209 TYR CB HB3 sing N N 210 TYR CG CD1 doub Y N 211 TYR CG CD2 sing Y N 212 TYR CD1 CE1 sing Y N 213 TYR CD1 HD1 sing N N 214 TYR CD2 CE2 doub Y N 215 TYR CD2 HD2 sing N N 216 TYR CE1 CZ doub Y N 217 TYR CE1 HE1 sing N N 218 TYR CE2 CZ sing Y N 219 TYR CE2 HE2 sing N N 220 TYR CZ OH sing N N 221 TYR OH HH sing N N 222 TYR OXT HXT sing N N 223 VAL N CA sing N N 224 VAL N H sing N N 225 VAL N H2 sing N N 226 VAL CA C sing N N 227 VAL CA CB sing N N 228 VAL CA HA sing N N 229 VAL C O doub N N 230 VAL C OXT sing N N 231 VAL CB CG1 sing N N 232 VAL CB CG2 sing N N 233 VAL CB HB sing N N 234 VAL CG1 HG11 sing N N 235 VAL CG1 HG12 sing N N 236 VAL CG1 HG13 sing N N 237 VAL CG2 HG21 sing N N 238 VAL CG2 HG22 sing N N 239 VAL CG2 HG23 sing N N 240 VAL OXT HXT sing N N 241 # _em_admin.current_status REL _em_admin.deposition_date 2026-03-12 _em_admin.deposition_site PDBE _em_admin.entry_id 29HQ _em_admin.last_update 2026-08-26 _em_admin.map_release_date 2026-08-26 _em_admin.title 'IAPP S20G growth-phase fibril polymorph 3PF-LJ' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.details ? _em_helical_entity.axial_symmetry C1 _em_helical_entity.angular_rotation_per_subunit -2.13 _em_helical_entity.axial_rise_per_subunit 4.75 # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 40 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'FEI FALCON IV (4k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version _em_software.reference_DOI 'PARTICLE SELECTION' ? 1 1 ? ? RELION 5.1 ? 'IMAGE ACQUISITION' ? 2 ? ? 1 RELION 5.1 ? MASKING ? 3 ? ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? ? ? ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? ? 'MODEL FITTING' ? 7 ? ? ? ? ? ? 'MODEL REFINEMENT' ? 8 ? ? ? ? ? ? OTHER ? 9 ? ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? ? RECONSTRUCTION ? 13 1 ? ? RELION 5.1 ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'Medical Research Council (MRC, United Kingdom)' _pdbx_audit_support.country 'United Kingdom' _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 29HQ _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O # loop_ #