HEADER OXIDOREDUCTASE 19-MAR-26 29LA TITLE L-DOPA EXTRADIOL DIOXYGENASE FROM BETA VULGARIS IN COMPLEX WITH 4- TITLE 2 NITROCATECHOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: 4,5-DOPA DIOXYGENASE EXTRADIOL 1; COMPND 3 CHAIN: A; COMPND 4 EC: 1.13.11.29; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BETA VULGARIS; SOURCE 3 ORGANISM_TAXID: 161934; SOURCE 4 GENE: DODA1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS DODA, BETALAMIC ACID, BETA VULGARIS, L-DOPA EXTRADIOL DIOXYGENASE, 4- KEYWDS 2 NITROCATECHOL, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.HAPKE,A.M.MILACZEWSKA-KREGIEL,A.KLUZA,T.BOROWSKI REVDAT 1 12-AUG-26 29LA 0 JRNL AUTH M.HAPKE,A.M.MILACZEWSKA,A.KLUZA,T.BOROWSKI JRNL TITL STRUCTURAL AND MECHANISTIC INSIGHT INTO OXIDATIVE RING JRNL TITL 2 OPENING CATALYZED BY L-DOPA EXTRADIOL DIOXYGENASE FROM BETA JRNL TITL 3 VULGARIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.13 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21.2_5419 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.13 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.69 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 140634 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.126 REMARK 3 R VALUE (WORKING SET) : 0.126 REMARK 3 FREE R VALUE : 0.143 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.490 REMARK 3 FREE R VALUE TEST SET COUNT : 2100 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.6900 - 2.7900 1.00 9749 148 0.1310 0.1485 REMARK 3 2 2.7900 - 2.2100 1.00 9401 143 0.1188 0.1298 REMARK 3 3 2.2100 - 1.9300 1.00 9310 141 0.1079 0.1220 REMARK 3 4 1.9300 - 1.7600 1.00 9274 141 0.0978 0.1251 REMARK 3 5 1.7600 - 1.6300 1.00 9251 140 0.0973 0.1147 REMARK 3 6 1.6300 - 1.5300 1.00 9210 139 0.0973 0.1205 REMARK 3 7 1.5300 - 1.4600 1.00 9166 139 0.1017 0.1221 REMARK 3 8 1.4600 - 1.3900 1.00 9215 140 0.1033 0.1169 REMARK 3 9 1.3900 - 1.3400 1.00 9166 139 0.1209 0.1605 REMARK 3 10 1.3400 - 1.2900 1.00 9156 139 0.1551 0.1863 REMARK 3 11 1.2900 - 1.2500 1.00 9159 138 0.2018 0.2021 REMARK 3 12 1.2500 - 1.2200 1.00 9129 139 0.2326 0.2423 REMARK 3 13 1.2200 - 1.1900 1.00 9127 138 0.2376 0.2558 REMARK 3 14 1.1900 - 1.1600 1.00 9107 138 0.2698 0.2661 REMARK 3 15 1.1600 - 1.1300 1.00 9114 138 0.3370 0.3387 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.133 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.370 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2504 REMARK 3 ANGLE : 1.003 3427 REMARK 3 CHIRALITY : 0.088 348 REMARK 3 PLANARITY : 0.009 452 REMARK 3 DIHEDRAL : 13.919 923 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 29LA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-JUL-26. REMARK 100 THE DEPOSITION ID IS D_1292155338. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P14 (MX2) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X CDTE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 140641 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.130 REMARK 200 RESOLUTION RANGE LOW (A) : 47.220 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 24.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.13 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 17.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MAGNESIUM CHLORIDE, 0.1 M REMARK 280 POTASSIUM CHLORIDE, 0.1 M PIPES 7.0, 20% PEG SMEAR MEDIUM, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.21500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 44.40500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 44.40500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 23.60750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 44.40500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 44.40500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 70.82250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 44.40500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 44.40500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 23.60750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 44.40500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 44.40500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 70.82250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 47.21500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 311 LIES ON A SPECIAL POSITION. REMARK 375 K K A 312 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 442 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 787 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 MET A 3 REMARK 465 MET A 4 REMARK 465 ASN A 5 REMARK 465 GLY A 6 REMARK 465 GLU A 7 REMARK 465 ASP A 8 REMARK 465 ALA A 9 REMARK 465 ASN A 10 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 11 CG OD1 OD2 REMARK 470 GLN A 12 CG CD OE1 NE2 REMARK 470 LYS A 52 CG CD CE NZ REMARK 470 LYS A 110 CG CD CE NZ REMARK 470 LYS A 121 CG CD CE NZ REMARK 470 ASP A 192 CG OD1 OD2 REMARK 470 LYS A 252 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD1 HIS A 151 O HOH A 406 1.42 REMARK 500 HH TYR A 190 O HOH A 405 1.54 REMARK 500 OE1 GLN A 89 O HOH A 402 1.97 REMARK 500 OE1 GLU A 254 O HOH A 403 2.00 REMARK 500 OH TYR A 190 O HOH A 405 2.04 REMARK 500 O HOH A 599 O HOH A 672 2.09 REMARK 500 O HOH A 474 O HOH A 686 2.09 REMARK 500 ND1 HIS A 151 O HOH A 406 2.10 REMARK 500 OE1 GLU A 16 O HOH A 407 2.11 REMARK 500 O HOH A 736 O HOH A 774 2.12 REMARK 500 OE2 GLU A 62 O HOH A 408 2.12 REMARK 500 O HOH A 517 O HOH A 735 2.12 REMARK 500 O HOH A 710 O HOH A 745 2.14 REMARK 500 O HOH A 408 O HOH A 676 2.15 REMARK 500 O HOH A 554 O HOH A 663 2.16 REMARK 500 NZ LYS A 91 O HOH A 409 2.16 REMARK 500 O HOH A 717 O HOH A 746 2.19 REMARK 500 O HOH A 535 O HOH A 659 2.19 REMARK 500 O HOH A 680 O HOH A 741 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP A 202 O1 PEG A 301 3555 1.95 REMARK 500 O HOH A 697 O HOH A 764 3555 2.06 REMARK 500 O HOH A 425 O HOH A 635 8555 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 97 82.42 -153.10 REMARK 500 HIS A 182 63.81 -152.29 REMARK 500 ASP A 192 78.91 -105.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 789 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH A 790 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH A 791 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH A 792 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH A 793 DISTANCE = 6.20 ANGSTROMS REMARK 525 HOH A 794 DISTANCE = 6.33 ANGSTROMS REMARK 525 HOH A 795 DISTANCE = 6.40 ANGSTROMS REMARK 525 HOH A 796 DISTANCE = 6.54 ANGSTROMS REMARK 525 HOH A 797 DISTANCE = 6.72 ANGSTROMS REMARK 525 HOH A 798 DISTANCE = 6.72 ANGSTROMS REMARK 525 HOH A 799 DISTANCE = 7.23 ANGSTROMS REMARK 525 HOH A 800 DISTANCE = 7.24 ANGSTROMS REMARK 525 HOH A 801 DISTANCE = 7.42 ANGSTROMS REMARK 525 HOH A 802 DISTANCE = 10.18 ANGSTROMS REMARK 525 HOH A 803 DISTANCE = 12.27 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 310 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 22 NE2 REMARK 620 2 HIS A 60 NE2 97.2 REMARK 620 3 HIS A 236 NE2 92.3 92.6 REMARK 620 4 4NC A 313 O7 86.3 176.0 89.3 REMARK 620 5 4NC A 313 O7 95.7 89.7 171.4 88.0 REMARK 620 6 4NC A 313 O8 97.7 94.8 166.7 82.7 5.8 REMARK 620 7 4NC A 313 O8 94.4 164.4 97.4 11.7 78.8 73.2 REMARK 620 8 HOH A 541 O 174.1 88.8 87.1 87.8 84.6 82.1 79.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 312 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 78 O REMARK 620 2 HIS A 78 O 0.0 REMARK 620 3 PHE A 80 O 68.0 68.0 REMARK 620 4 PHE A 80 O 68.0 68.0 0.0 REMARK 620 5 ASP A 81 OD1 114.4 114.4 70.9 70.9 REMARK 620 6 ASP A 81 OD1 114.4 114.4 70.9 70.9 0.0 REMARK 620 7 HOH A 545 O 52.4 52.4 99.5 99.5 166.6 166.6 REMARK 620 8 HOH A 545 O 126.2 126.2 75.2 75.2 87.3 87.3 99.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 311 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 442 O REMARK 620 2 HOH A 442 O 0.6 REMARK 620 3 HOH A 450 O 87.8 88.4 REMARK 620 4 HOH A 450 O 88.5 87.8 176.3 REMARK 620 5 HOH A 631 O 94.6 94.6 91.4 88.9 REMARK 620 6 HOH A 631 O 94.6 94.6 88.9 91.4 170.9 REMARK 620 7 HOH A 787 O 179.2 179.5 91.5 92.2 85.9 85.0 REMARK 620 8 HOH A 787 O 179.5 179.2 92.2 91.5 85.0 85.9 1.1 REMARK 620 N 1 2 3 4 5 6 7 DBREF 29LA A 1 275 UNP I3PFJ9 DOD1W_BETVU 1 275 SEQADV 29LA SER A -2 UNP I3PFJ9 EXPRESSION TAG SEQADV 29LA ASN A -1 UNP I3PFJ9 EXPRESSION TAG SEQADV 29LA ALA A 0 UNP I3PFJ9 EXPRESSION TAG SEQRES 1 A 278 SER ASN ALA MET LYS MET MET ASN GLY GLU ASP ALA ASN SEQRES 2 A 278 ASP GLN MET ILE LYS GLU SER PHE PHE ILE THR HIS GLY SEQRES 3 A 278 ASN PRO ILE LEU THR VAL GLU ASP THR HIS PRO LEU ARG SEQRES 4 A 278 PRO PHE PHE GLU THR TRP ARG GLU LYS ILE PHE SER LYS SEQRES 5 A 278 LYS PRO LYS ALA ILE LEU ILE ILE SER GLY HIS TRP GLU SEQRES 6 A 278 THR VAL LYS PRO THR VAL ASN ALA VAL HIS ILE ASN ASP SEQRES 7 A 278 THR ILE HIS ASP PHE ASP ASP TYR PRO ALA ALA MET TYR SEQRES 8 A 278 GLN PHE LYS TYR PRO ALA PRO GLY GLU PRO GLU LEU ALA SEQRES 9 A 278 ARG LYS VAL GLU GLU ILE LEU LYS LYS SER GLY PHE GLU SEQRES 10 A 278 THR ALA GLU THR ASP GLN LYS ARG GLY LEU ASP HIS GLY SEQRES 11 A 278 ALA TRP VAL PRO LEU MET LEU MET TYR PRO GLU ALA ASP SEQRES 12 A 278 ILE PRO VAL CYS GLN LEU SER VAL GLN PRO HIS LEU ASP SEQRES 13 A 278 GLY THR TYR HIS TYR ASN LEU GLY ARG ALA LEU ALA PRO SEQRES 14 A 278 LEU LYS ASN ASP GLY VAL LEU ILE ILE GLY SER GLY SER SEQRES 15 A 278 ALA THR HIS PRO LEU ASP GLU THR PRO HIS TYR PHE ASP SEQRES 16 A 278 GLY VAL ALA PRO TRP ALA ALA ALA PHE ASP SER TRP LEU SEQRES 17 A 278 ARG LYS ALA LEU ILE ASN GLY ARG PHE GLU GLU VAL ASN SEQRES 18 A 278 ILE TYR GLU SER LYS ALA PRO ASN TRP LYS LEU ALA HIS SEQRES 19 A 278 PRO PHE PRO GLU HIS PHE TYR PRO LEU HIS VAL VAL LEU SEQRES 20 A 278 GLY ALA ALA GLY GLU LYS TRP LYS ALA GLU LEU ILE HIS SEQRES 21 A 278 SER SER TRP ASP HIS GLY THR LEU CYS HIS GLY SER TYR SEQRES 22 A 278 LYS PHE THR SER ALA HET PEG A 301 17 HET PEG A 302 17 HET PEG A 303 17 HET EDO A 304 10 HET EDO A 305 10 HET EDO A 306 10 HET EDO A 307 10 HET EDO A 308 10 HET EDO A 309 10 HET NI A 310 1 HET MG A 311 1 HET K A 312 1 HET 4NC A 313 28 HET EDO A 314 10 HET EDO A 315 10 HET EDO A 316 20 HET EDO A 317 10 HET CL A 318 1 HET MG A 319 1 HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM EDO 1,2-ETHANEDIOL HETNAM NI NICKEL (II) ION HETNAM MG MAGNESIUM ION HETNAM K POTASSIUM ION HETNAM 4NC 4-NITROCATECHOL HETNAM CL CHLORIDE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 PEG 3(C4 H10 O3) FORMUL 5 EDO 10(C2 H6 O2) FORMUL 11 NI NI 2+ FORMUL 12 MG 2(MG 2+) FORMUL 13 K K 1+ FORMUL 14 4NC C6 H5 N O4 FORMUL 19 CL CL 1- FORMUL 21 HOH *403(H2 O) HELIX 1 AA1 ASN A 24 VAL A 29 5 6 HELIX 2 AA2 PRO A 34 THR A 41 1 8 HELIX 3 AA3 THR A 41 ILE A 46 1 6 HELIX 4 AA4 PRO A 84 PHE A 90 1 7 HELIX 5 AA5 GLU A 97 LYS A 110 1 14 HELIX 6 AA6 ASP A 125 TYR A 136 1 12 HELIX 7 AA7 ASP A 153 ALA A 165 1 13 HELIX 8 AA8 PRO A 166 ASP A 170 5 5 HELIX 9 AA9 ALA A 195 ASN A 211 1 17 HELIX 10 AB1 ARG A 213 ILE A 219 1 7 HELIX 11 AB2 TYR A 220 LYS A 223 5 4 HELIX 12 AB3 ASN A 226 HIS A 231 1 6 HELIX 13 AB4 PHE A 237 ALA A 247 1 11 SHEET 1 AA1 6 VAL A 143 GLN A 145 0 SHEET 2 AA1 6 ALA A 53 SER A 58 1 N ILE A 54 O CYS A 144 SHEET 3 AA1 6 VAL A 172 GLY A 178 1 O SER A 177 N ILE A 57 SHEET 4 AA1 6 GLU A 16 THR A 21 1 N ILE A 20 O GLY A 176 SHEET 5 AA1 6 SER A 269 SER A 274 -1 O PHE A 272 N SER A 17 SHEET 6 AA1 6 TRP A 251 HIS A 257 -1 N LYS A 252 O THR A 273 SHEET 1 AA2 2 THR A 67 ASN A 69 0 SHEET 2 AA2 2 GLU A 117 ASP A 119 1 O ASP A 119 N VAL A 68 SHEET 1 AA3 2 TRP A 260 ASP A 261 0 SHEET 2 AA3 2 LEU A 265 CYS A 266 -1 O LEU A 265 N ASP A 261 LINK OE1BGLU A 16 MG MG A 319 1555 1555 1.95 LINK NE2 HIS A 22 NI NI A 310 1555 1555 2.09 LINK NE2 HIS A 60 NI NI A 310 1555 1555 2.06 LINK O HIS A 78 K K A 312 1555 1555 3.43 LINK O HIS A 78 K K A 312 1555 8555 3.43 LINK O PHE A 80 K K A 312 1555 1555 2.75 LINK O PHE A 80 K K A 312 1555 8555 2.75 LINK OD1 ASP A 81 K K A 312 1555 1555 2.85 LINK OD1 ASP A 81 K K A 312 1555 8555 2.85 LINK NE2 HIS A 236 NI NI A 310 1555 1555 2.09 LINK NI NI A 310 O7 A4NC A 313 1555 1555 1.99 LINK NI NI A 310 O7 B4NC A 313 1555 1555 2.05 LINK NI NI A 310 O8 A4NC A 313 1555 1555 2.10 LINK NI NI A 310 O8 B4NC A 313 1555 1555 2.11 LINK NI NI A 310 O HOH A 541 1555 1555 2.27 LINK MG MG A 311 O HOH A 442 1555 1555 2.07 LINK MG MG A 311 O HOH A 442 1555 8555 2.07 LINK MG MG A 311 O HOH A 450 1555 1555 2.07 LINK MG MG A 311 O HOH A 450 1555 8555 2.07 LINK MG MG A 311 O HOH A 631 1555 1555 2.11 LINK MG MG A 311 O HOH A 631 1555 8555 2.11 LINK MG MG A 311 O HOH A 787 1555 1555 2.10 LINK MG MG A 311 O HOH A 787 1555 8555 2.10 LINK K K A 312 O HOH A 545 1555 1555 2.86 LINK K K A 312 O HOH A 545 1555 8555 2.86 CRYST1 88.810 88.810 94.430 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011260 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011260 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010590 0.00000 CONECT 102 4767 CONECT 218 4685 CONECT 964 4685 CONECT 1303 4687 CONECT 1332 4687 CONECT 1355 4687 CONECT 3957 4685 CONECT 4574 4575 4576 4581 4582 CONECT 4575 4574 4583 CONECT 4576 4574 4577 4584 4585 CONECT 4577 4576 4578 CONECT 4578 4577 4579 4586 4587 CONECT 4579 4578 4580 4588 4589 CONECT 4580 4579 4590 CONECT 4581 4574 CONECT 4582 4574 CONECT 4583 4575 CONECT 4584 4576 CONECT 4585 4576 CONECT 4586 4578 CONECT 4587 4578 CONECT 4588 4579 CONECT 4589 4579 CONECT 4590 4580 CONECT 4591 4592 4593 4598 4599 CONECT 4592 4591 4600 CONECT 4593 4591 4594 4601 4602 CONECT 4594 4593 4595 CONECT 4595 4594 4596 4603 4604 CONECT 4596 4595 4597 4605 4606 CONECT 4597 4596 4607 CONECT 4598 4591 CONECT 4599 4591 CONECT 4600 4592 CONECT 4601 4593 CONECT 4602 4593 CONECT 4603 4595 CONECT 4604 4595 CONECT 4605 4596 CONECT 4606 4596 CONECT 4607 4597 CONECT 4608 4609 4610 4615 4616 CONECT 4609 4608 4617 CONECT 4610 4608 4611 4618 4619 CONECT 4611 4610 4612 CONECT 4612 4611 4613 4620 4621 CONECT 4613 4612 4614 4622 4623 CONECT 4614 4613 4624 CONECT 4615 4608 CONECT 4616 4608 CONECT 4617 4609 CONECT 4618 4610 CONECT 4619 4610 CONECT 4620 4612 CONECT 4621 4612 CONECT 4622 4613 CONECT 4623 4613 CONECT 4624 4614 CONECT 4625 4626 4627 4629 4630 CONECT 4626 4625 4631 CONECT 4627 4625 4628 4632 4633 CONECT 4628 4627 4634 CONECT 4629 4625 CONECT 4630 4625 CONECT 4631 4626 CONECT 4632 4627 CONECT 4633 4627 CONECT 4634 4628 CONECT 4635 4636 4637 4639 4640 CONECT 4636 4635 4641 CONECT 4637 4635 4638 4642 4643 CONECT 4638 4637 4644 CONECT 4639 4635 CONECT 4640 4635 CONECT 4641 4636 CONECT 4642 4637 CONECT 4643 4637 CONECT 4644 4638 CONECT 4645 4646 4647 4649 4650 CONECT 4646 4645 4651 CONECT 4647 4645 4648 4652 4653 CONECT 4648 4647 4654 CONECT 4649 4645 CONECT 4650 4645 CONECT 4651 4646 CONECT 4652 4647 CONECT 4653 4647 CONECT 4654 4648 CONECT 4655 4656 4657 4659 4660 CONECT 4656 4655 4661 CONECT 4657 4655 4658 4662 4663 CONECT 4658 4657 4664 CONECT 4659 4655 CONECT 4660 4655 CONECT 4661 4656 CONECT 4662 4657 CONECT 4663 4657 CONECT 4664 4658 CONECT 4665 4666 4667 4669 4670 CONECT 4666 4665 4671 CONECT 4667 4665 4668 4672 4673 CONECT 4668 4667 4674 CONECT 4669 4665 CONECT 4670 4665 CONECT 4671 4666 CONECT 4672 4667 CONECT 4673 4667 CONECT 4674 4668 CONECT 4675 4676 4677 4679 4680 CONECT 4676 4675 4681 CONECT 4677 4675 4678 4682 4683 CONECT 4678 4677 4684 CONECT 4679 4675 CONECT 4680 4675 CONECT 4681 4676 CONECT 4682 4677 CONECT 4683 4677 CONECT 4684 4678 CONECT 4685 218 964 3957 4700 CONECT 4685 4701 4702 4703 4908 CONECT 4686 4809 4817 4998 5154 CONECT 4687 1303 1332 1355 4912 CONECT 4688 4690 4698 4700 CONECT 4689 4691 4699 4701 CONECT 4690 4688 4692 4702 CONECT 4691 4689 4693 4703 CONECT 4692 4690 4694 4710 CONECT 4693 4691 4695 4711 CONECT 4694 4692 4696 4704 CONECT 4695 4693 4697 4705 CONECT 4696 4694 4698 4712 CONECT 4697 4695 4699 4713 CONECT 4698 4688 4696 4714 CONECT 4699 4689 4697 4715 CONECT 4700 4685 4688 CONECT 4701 4685 4689 CONECT 4702 4685 4690 CONECT 4703 4685 4691 CONECT 4704 4694 4706 4708 CONECT 4705 4695 4707 4709 CONECT 4706 4704 CONECT 4707 4705 CONECT 4708 4704 CONECT 4709 4705 CONECT 4710 4692 CONECT 4711 4693 CONECT 4712 4696 CONECT 4713 4697 CONECT 4714 4698 CONECT 4715 4699 CONECT 4716 4717 4718 4720 4721 CONECT 4717 4716 4722 CONECT 4718 4716 4719 4723 4724 CONECT 4719 4718 4725 CONECT 4720 4716 CONECT 4721 4716 CONECT 4722 4717 CONECT 4723 4718 CONECT 4724 4718 CONECT 4725 4719 CONECT 4726 4727 4728 4730 4731 CONECT 4727 4726 4732 CONECT 4728 4726 4729 4733 4734 CONECT 4729 4728 4735 CONECT 4730 4726 CONECT 4731 4726 CONECT 4732 4727 CONECT 4733 4728 CONECT 4734 4728 CONECT 4735 4729 CONECT 4736 4738 4740 4744 4746 CONECT 4737 4739 4741 4745 4747 CONECT 4738 4736 4748 CONECT 4739 4737 4749 CONECT 4740 4736 4742 4750 4752 CONECT 4741 4737 4743 4751 4753 CONECT 4742 4740 4754 CONECT 4743 4741 4755 CONECT 4744 4736 CONECT 4745 4737 CONECT 4746 4736 CONECT 4747 4737 CONECT 4748 4738 CONECT 4749 4739 CONECT 4750 4740 CONECT 4751 4741 CONECT 4752 4740 CONECT 4753 4741 CONECT 4754 4742 CONECT 4755 4743 CONECT 4756 4757 4758 4760 4761 CONECT 4757 4756 4762 CONECT 4758 4756 4759 4763 4764 CONECT 4759 4758 4765 CONECT 4760 4756 CONECT 4761 4756 CONECT 4762 4757 CONECT 4763 4758 CONECT 4764 4758 CONECT 4765 4759 CONECT 4767 102 CONECT 4809 4686 CONECT 4817 4686 CONECT 4908 4685 CONECT 4912 4687 CONECT 4998 4686 CONECT 5154 4686 MASTER 406 0 19 13 10 0 0 6 2585 1 207 22 END