HEADER FLAVOPROTEIN 20-MAR-26 29LW TITLE CRYSTAL STRUCTURE OF PPSB1-LOV PROTEIN FROM PSEUDOMONAS PUTIDA IN TITLE 2 COMPLEX WITH 5-DEAZAFLAVIN MONONUCLEOTIDE (5DFMN) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SENSORY BOX PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PUTIDA KT2440; SOURCE 3 ORGANISM_TAXID: 160488; SOURCE 4 GENE: PP_4629; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS 5-DEAZA FMN, COMPLEX, FLAVINYLATION, FLAVOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.J.ROZEBOOM,M.W.FRAAIJE REVDAT 1 13-MAY-26 29LW 0 JRNL AUTH X.FAN,S.W.WIDODO,H.J.ROZEBOOM,M.W.FRAAIJE JRNL TITL ENGINEERED ESCHERICHIA COLI STRAINS FOR FLAVOPROTEIN JRNL TITL 2 RESEARCH: FROM PRODUCTION OF APO PROTEINS TO INCORPORATION JRNL TITL 3 OF FLAVIN DERIVATIVES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0430 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 53.58 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 48098 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2541 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.54 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.58 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3054 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.58 REMARK 3 BIN R VALUE (WORKING SET) : 0.3260 REMARK 3 BIN FREE R VALUE SET COUNT : 157 REMARK 3 BIN FREE R VALUE : 0.3340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2172 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 98 REMARK 3 SOLVENT ATOMS : 284 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.87000 REMARK 3 B22 (A**2) : -0.63000 REMARK 3 B33 (A**2) : -0.24000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.069 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.069 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.060 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.576 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.974 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.965 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2334 ; 0.010 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 2193 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3145 ; 1.769 ; 1.829 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5016 ; 0.630 ; 1.796 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 274 ; 6.027 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 29 ; 5.858 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 411 ;12.295 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 336 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2847 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 587 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1090 ; 1.794 ; 1.716 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1090 ; 1.793 ; 1.717 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1366 ; 2.644 ; 3.070 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1367 ; 2.645 ; 3.074 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1244 ; 3.271 ; 2.165 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1245 ; 3.274 ; 2.168 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1780 ; 4.938 ; 3.765 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2768 ; 7.139 ;20.190 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2699 ; 6.953 ;17.910 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 201 REMARK 3 ORIGIN FOR THE GROUP (A): -6.0931 11.4471 -8.4114 REMARK 3 T TENSOR REMARK 3 T11: 0.1633 T22: 0.0567 REMARK 3 T33: 0.0064 T12: -0.0071 REMARK 3 T13: 0.0146 T23: 0.0131 REMARK 3 L TENSOR REMARK 3 L11: 0.8902 L22: 1.2332 REMARK 3 L33: 1.2655 L12: -0.1312 REMARK 3 L13: -0.3760 L23: 0.1245 REMARK 3 S TENSOR REMARK 3 S11: 0.0130 S12: -0.1214 S13: -0.0605 REMARK 3 S21: 0.1054 S22: -0.0423 S23: 0.0237 REMARK 3 S31: 0.0603 S32: 0.0114 S33: 0.0294 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 201 REMARK 3 ORIGIN FOR THE GROUP (A): 2.3281 13.1128 -26.7495 REMARK 3 T TENSOR REMARK 3 T11: 0.1935 T22: 0.0150 REMARK 3 T33: 0.0133 T12: -0.0116 REMARK 3 T13: 0.0333 T23: -0.0005 REMARK 3 L TENSOR REMARK 3 L11: 0.9740 L22: 1.5209 REMARK 3 L33: 0.7665 L12: -0.4538 REMARK 3 L13: -0.4663 L23: 0.4289 REMARK 3 S TENSOR REMARK 3 S11: 0.0272 S12: 0.0051 S13: 0.0234 REMARK 3 S21: -0.2045 S22: 0.0350 S23: -0.1182 REMARK 3 S31: -0.0896 S32: -0.0000 S33: -0.0622 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 29LW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-MAR-26. REMARK 100 THE DEPOSITION ID IS D_1292155328. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUL-25 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6-8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96546 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50710 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.540 REMARK 200 RESOLUTION RANGE LOW (A) : 107.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 11.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.9 REMARK 200 DATA REDUNDANCY IN SHELL : 10.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350, 0.2 M AMMONIUM FORMATE, REMARK 280 0.1 M BISTRIS PROPANE PH 8.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.61950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.57250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.93750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.57250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.61950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.93750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 135 REMARK 465 PRO A 136 REMARK 465 LYS A 137 REMARK 465 PRO A 138 REMARK 465 ASP A 139 REMARK 465 GLU A 140 REMARK 465 ARG A 141 REMARK 465 ALA A 142 REMARK 465 ARG B 135 REMARK 465 PRO B 136 REMARK 465 LYS B 137 REMARK 465 PRO B 138 REMARK 465 ASP B 139 REMARK 465 GLU B 140 REMARK 465 ARG B 141 REMARK 465 ALA B 142 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 1 CG - SD - CE ANGL. DEV. = 10.8 DEGREES REMARK 500 ARG A 61 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG A 77 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 80 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG B 61 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG B 77 CG - CD - NE ANGL. DEV. = -13.1 DEGREES REMARK 500 ARG B 77 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 GLU B 96 CG - CD - OE1 ANGL. DEV. = -12.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 50 32.19 77.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 109 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 29LX RELATED DB: PDB DBREF 29LW A 1 142 UNP Q88E39 Q88E39_PSEPK 1 142 DBREF 29LW B 1 142 UNP Q88E39 Q88E39_PSEPK 1 142 SEQRES 1 A 142 MET ILE ASN ALA GLN LEU LEU GLN SER MET VAL ASP ALA SEQRES 2 A 142 SER ASN ASP GLY ILE VAL VAL ALA GLU LYS GLU GLY ASP SEQRES 3 A 142 ASP THR ILE LEU ILE TYR VAL ASN ALA ALA PHE GLU TYR SEQRES 4 A 142 LEU THR GLY TYR SER ARG ASP GLU ILE LEU TYR GLN ASP SEQRES 5 A 142 CYS ARG PHE LEU GLN GLY ASP ASP ARG ASP GLN LEU GLY SEQRES 6 A 142 ARG ALA ARG ILE ARG LYS ALA MET ALA GLU GLY ARG PRO SEQRES 7 A 142 CYS ARG GLU VAL LEU ARG ASN TYR ARG LYS ASP GLY SER SEQRES 8 A 142 ALA PHE TRP ASN GLU LEU SER ILE THR PRO VAL LYS SER SEQRES 9 A 142 ASP PHE ASP GLN ARG THR TYR PHE ILE GLY ILE GLN LYS SEQRES 10 A 142 ASP VAL SER ARG GLN VAL GLU LEU GLU ARG GLU LEU ALA SEQRES 11 A 142 GLU LEU ARG ALA ARG PRO LYS PRO ASP GLU ARG ALA SEQRES 1 B 142 MET ILE ASN ALA GLN LEU LEU GLN SER MET VAL ASP ALA SEQRES 2 B 142 SER ASN ASP GLY ILE VAL VAL ALA GLU LYS GLU GLY ASP SEQRES 3 B 142 ASP THR ILE LEU ILE TYR VAL ASN ALA ALA PHE GLU TYR SEQRES 4 B 142 LEU THR GLY TYR SER ARG ASP GLU ILE LEU TYR GLN ASP SEQRES 5 B 142 CYS ARG PHE LEU GLN GLY ASP ASP ARG ASP GLN LEU GLY SEQRES 6 B 142 ARG ALA ARG ILE ARG LYS ALA MET ALA GLU GLY ARG PRO SEQRES 7 B 142 CYS ARG GLU VAL LEU ARG ASN TYR ARG LYS ASP GLY SER SEQRES 8 B 142 ALA PHE TRP ASN GLU LEU SER ILE THR PRO VAL LYS SER SEQRES 9 B 142 ASP PHE ASP GLN ARG THR TYR PHE ILE GLY ILE GLN LYS SEQRES 10 B 142 ASP VAL SER ARG GLN VAL GLU LEU GLU ARG GLU LEU ALA SEQRES 11 B 142 GLU LEU ARG ALA ARG PRO LYS PRO ASP GLU ARG ALA HET 9O9 A 201 31 HET GOL A 202 6 HET GOL A 203 6 HET GOL A 204 6 HET 9O9 B 201 31 HET GOL B 202 6 HET GOL B 203 6 HET GOL B 204 6 HETNAM 9O9 1-DEOXY-1-(7,8-DIMETHYL-2,4-DIOXO-3,4- HETNAM 2 9O9 DIHYDROPYRIMIDO[4,5-B]QUINOLIN-10(2H)-YL)-5-O- HETNAM 3 9O9 PHOSPHONO-D-RIBITOL HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 9O9 2(C18 H22 N3 O9 P) FORMUL 4 GOL 6(C3 H8 O3) FORMUL 11 HOH *284(H2 O) HELIX 1 AA1 ASN A 3 SER A 14 1 12 HELIX 2 AA2 ASN A 34 GLY A 42 1 9 HELIX 3 AA3 SER A 44 LEU A 49 1 6 HELIX 4 AA4 ASP A 52 GLY A 58 5 7 HELIX 5 AA5 GLN A 63 GLY A 76 1 14 HELIX 6 AA6 VAL A 119 ALA A 134 1 16 HELIX 7 AA7 ASN B 3 SER B 14 1 12 HELIX 8 AA8 ASN B 34 GLY B 42 1 9 HELIX 9 AA9 SER B 44 LEU B 49 1 6 HELIX 10 AB1 ASP B 52 GLY B 58 5 7 HELIX 11 AB2 LEU B 64 GLU B 75 1 12 HELIX 12 AB3 VAL B 119 ALA B 134 1 16 SHEET 1 AA1 5 ASP A 27 VAL A 33 0 SHEET 2 AA1 5 GLY A 17 GLU A 24 -1 N VAL A 20 O ILE A 31 SHEET 3 AA1 5 THR A 110 ASP A 118 -1 O THR A 110 N LYS A 23 SHEET 4 AA1 5 ALA A 92 LYS A 103 -1 N VAL A 102 O TYR A 111 SHEET 5 AA1 5 CYS A 79 TYR A 86 -1 N LEU A 83 O ASN A 95 SHEET 1 AA2 5 ASP B 27 VAL B 33 0 SHEET 2 AA2 5 GLY B 17 GLU B 24 -1 N VAL B 20 O ILE B 31 SHEET 3 AA2 5 THR B 110 ASP B 118 -1 O GLY B 114 N VAL B 19 SHEET 4 AA2 5 ALA B 92 LYS B 103 -1 N VAL B 102 O TYR B 111 SHEET 5 AA2 5 CYS B 79 TYR B 86 -1 N LEU B 83 O ASN B 95 CRYST1 51.239 61.875 107.145 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019516 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016162 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009333 0.00000 CONECT 2209 2210 2213 2231 CONECT 2210 2209 2211 2221 CONECT 2211 2210 2212 2229 CONECT 2212 2211 2214 CONECT 2213 2209 2214 CONECT 2214 2212 2213 2230 CONECT 2215 2216 2220 2222 CONECT 2216 2215 2217 2223 CONECT 2217 2216 2218 CONECT 2218 2217 2219 2229 CONECT 2219 2218 2220 2221 CONECT 2220 2215 2219 CONECT 2221 2210 2219 CONECT 2222 2215 CONECT 2223 2216 CONECT 2224 2225 2229 CONECT 2225 2224 2226 2233 CONECT 2226 2225 2227 2235 CONECT 2227 2226 2228 2234 CONECT 2228 2227 2232 CONECT 2229 2211 2218 2224 CONECT 2230 2214 CONECT 2231 2209 CONECT 2232 2228 2239 CONECT 2233 2225 CONECT 2234 2227 CONECT 2235 2226 CONECT 2236 2239 CONECT 2237 2239 CONECT 2238 2239 CONECT 2239 2232 2236 2237 2238 CONECT 2240 2241 2242 CONECT 2241 2240 CONECT 2242 2240 2243 2244 CONECT 2243 2242 CONECT 2244 2242 2245 CONECT 2245 2244 CONECT 2246 2247 2248 CONECT 2247 2246 CONECT 2248 2246 2249 2250 CONECT 2249 2248 CONECT 2250 2248 2251 CONECT 2251 2250 CONECT 2252 2253 2254 CONECT 2253 2252 CONECT 2254 2252 2255 2256 CONECT 2255 2254 CONECT 2256 2254 2257 CONECT 2257 2256 CONECT 2258 2259 2262 2280 CONECT 2259 2258 2260 2270 CONECT 2260 2259 2261 2278 CONECT 2261 2260 2263 CONECT 2262 2258 2263 CONECT 2263 2261 2262 2279 CONECT 2264 2265 2269 2271 CONECT 2265 2264 2266 2272 CONECT 2266 2265 2267 CONECT 2267 2266 2268 2278 CONECT 2268 2267 2269 2270 CONECT 2269 2264 2268 CONECT 2270 2259 2268 CONECT 2271 2264 CONECT 2272 2265 CONECT 2273 2274 2278 CONECT 2274 2273 2275 2282 CONECT 2275 2274 2276 2284 CONECT 2276 2275 2277 2283 CONECT 2277 2276 2281 CONECT 2278 2260 2267 2273 CONECT 2279 2263 CONECT 2280 2258 CONECT 2281 2277 2288 CONECT 2282 2274 CONECT 2283 2276 CONECT 2284 2275 CONECT 2285 2288 CONECT 2286 2288 CONECT 2287 2288 CONECT 2288 2281 2285 2286 2287 CONECT 2289 2290 2291 CONECT 2290 2289 CONECT 2291 2289 2292 2293 CONECT 2292 2291 CONECT 2293 2291 2294 CONECT 2294 2293 CONECT 2295 2296 2297 CONECT 2296 2295 CONECT 2297 2295 2298 2299 CONECT 2298 2297 CONECT 2299 2297 2300 CONECT 2300 2299 CONECT 2301 2302 2303 CONECT 2302 2301 CONECT 2303 2301 2304 2305 CONECT 2304 2303 CONECT 2305 2303 2306 CONECT 2306 2305 MASTER 362 0 8 12 10 0 0 6 2554 2 98 22 END