HEADER RNA BINDING PROTEIN 10-APR-26 29WM TITLE CRYSTAL STRUCTURE OF THE G3BP1 NTF2L DOMAIN HOMODIMER IN COMPLEX WITH TITLE 2 LA CROSSE VIRUS NUCLEOPROTEIN N-TERMINAL PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 1; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 SYNONYM: G3BP-1,ATP-DEPENDENT DNA HELICASE VIII,HDH VIII,GAP SH3 COMPND 5 DOMAIN-BINDING PROTEIN 1; COMPND 6 EC: 3.6.4.12,3.6.4.13; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: NUCLEOPROTEIN; COMPND 10 CHAIN: X, Y; COMPND 11 SYNONYM: NUCLEOCAPSID PROTEIN,PROTEIN N; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: G3BP1, G3BP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: ORTHOBUNYAVIRUS LACROSSEENSE; SOURCE 11 ORGANISM_TAXID: 3052409 KEYWDS STRESS GRANULES, PROTEIN-BINDING, RNA-BINDING, VIRAL NUCLEOPROTEIN, KEYWDS 2 RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.E.R.FIRDAUS,P.GERLACH REVDAT 1 07-OCT-26 29WM 0 JRNL AUTH M.E.R.FIRDAUS,P.GERLACH JRNL TITL LACV NP LOCALIZES INTO STRESS GRANULES AND INTERACTS THERE JRNL TITL 2 WITH G3BP1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21.1_5286 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 72.58 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 35522 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.750 REMARK 3 FREE R VALUE TEST SET COUNT : 1686 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 72.5800 - 5.4900 1.00 2991 154 0.2152 0.2555 REMARK 3 2 5.4900 - 4.3600 1.00 2883 127 0.1773 0.2187 REMARK 3 3 4.3600 - 3.8100 1.00 2810 179 0.2085 0.2586 REMARK 3 4 3.8100 - 3.4600 1.00 2820 141 0.2254 0.2764 REMARK 3 5 3.4600 - 3.2100 1.00 2809 144 0.2654 0.2848 REMARK 3 6 3.2100 - 3.0200 1.00 2803 142 0.2608 0.3322 REMARK 3 7 3.0200 - 2.8700 1.00 2784 130 0.2687 0.3425 REMARK 3 8 2.8700 - 2.7500 1.00 2809 151 0.2787 0.3216 REMARK 3 9 2.7500 - 2.6400 1.00 2783 129 0.2876 0.4121 REMARK 3 10 2.6400 - 2.5500 1.00 2799 120 0.2848 0.3572 REMARK 3 11 2.5500 - 2.4700 1.00 2773 126 0.2659 0.3150 REMARK 3 12 2.4700 - 2.4000 1.00 2772 143 0.2778 0.3392 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.372 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.175 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 53.25 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 6327 REMARK 3 ANGLE : 0.884 8586 REMARK 3 CHIRALITY : 0.053 936 REMARK 3 PLANARITY : 0.007 1133 REMARK 3 DIHEDRAL : 15.984 2201 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 29WM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-APR-26. REMARK 100 THE DEPOSITION ID IS D_1292155974. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUL-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.965 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 2023-06-30 REMARK 200 DATA SCALING SOFTWARE : POINTLESS 1.12.16, AIMLESS REMARK 200 0.7.15 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35528 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 72.620 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 13.00 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 13.20 REMARK 200 R MERGE FOR SHELL (I) : 0.94700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: 100 UM ROD-SHAPE, GREW IN ONE WEEK REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MMT BUFFER (PH 9.0) AND 25% PEG REMARK 280 1500, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 41.54950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.66550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.25350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.66550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.54950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.25350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, Y REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: F REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -41.54950 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 47.25350 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 139 REMARK 465 GLY A 140 REMARK 465 GLY B 0 REMARK 465 MET B 1 REMARK 465 VAL B 2 REMARK 465 MET B 3 REMARK 465 GLU B 4 REMARK 465 GLU B 117 REMARK 465 GLY B 118 REMARK 465 SER B 119 REMARK 465 VAL B 120 REMARK 465 ALA B 121 REMARK 465 ASN B 122 REMARK 465 GLY B 139 REMARK 465 GLY B 140 REMARK 465 GLY C 139 REMARK 465 GLY C 140 REMARK 465 GLY D 0 REMARK 465 MET D 1 REMARK 465 VAL D 2 REMARK 465 MET D 3 REMARK 465 GLU D 4 REMARK 465 LYS D 5 REMARK 465 GLY D 43 REMARK 465 GLY D 44 REMARK 465 LEU D 45 REMARK 465 ASP D 46 REMARK 465 SER D 47 REMARK 465 ASN D 48 REMARK 465 GLY D 49 REMARK 465 LYS D 50 REMARK 465 PRO D 51 REMARK 465 ALA D 52 REMARK 465 GLU D 117 REMARK 465 GLY D 118 REMARK 465 SER D 119 REMARK 465 VAL D 120 REMARK 465 GLY D 139 REMARK 465 GLY D 140 REMARK 465 GLY E 0 REMARK 465 MET E 1 REMARK 465 VAL E 2 REMARK 465 MET E 3 REMARK 465 GLY E 44 REMARK 465 LEU E 45 REMARK 465 ASP E 46 REMARK 465 SER E 47 REMARK 465 ASN E 48 REMARK 465 GLY E 49 REMARK 465 LYS E 50 REMARK 465 PRO E 51 REMARK 465 ALA E 52 REMARK 465 GLU E 117 REMARK 465 GLY E 118 REMARK 465 SER E 119 REMARK 465 VAL E 120 REMARK 465 ALA E 121 REMARK 465 GLY E 139 REMARK 465 GLY E 140 REMARK 465 GLY F 0 REMARK 465 MET F 1 REMARK 465 VAL F 2 REMARK 465 MET F 3 REMARK 465 GLY F 118 REMARK 465 SER F 119 REMARK 465 VAL F 120 REMARK 465 ALA F 121 REMARK 465 ASN F 122 REMARK 465 GLY F 139 REMARK 465 GLY F 140 REMARK 465 VAL X 9 REMARK 465 ALA X 10 REMARK 465 VAL Y 9 REMARK 465 ALA Y 10 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 2 CG1 CG2 REMARK 470 GLU A 4 CG CD OE1 OE2 REMARK 470 LYS A 5 CG CD CE NZ REMARK 470 LYS A 36 CG CD CE NZ REMARK 470 ASP A 46 CG OD1 OD2 REMARK 470 SER A 47 OG REMARK 470 ASN A 48 CG OD1 ND2 REMARK 470 LYS A 50 CG CD CE NZ REMARK 470 LYS A 59 CG CD CE NZ REMARK 470 LYS A 76 CG CD CE NZ REMARK 470 SER A 119 OG REMARK 470 VAL A 120 CG1 CG2 REMARK 470 LYS B 5 CG CD CE NZ REMARK 470 LYS B 36 CG CD CE NZ REMARK 470 ASN B 48 CG OD1 ND2 REMARK 470 LYS B 50 CG CD CE NZ REMARK 470 LYS B 59 CG CD CE NZ REMARK 470 ARG B 63 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 123 CG CD CE NZ REMARK 470 GLU C 4 CG CD OE1 OE2 REMARK 470 ARG C 32 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 36 CG CD CE NZ REMARK 470 ASN C 37 CG OD1 ND2 REMARK 470 ASN C 48 CG OD1 ND2 REMARK 470 LYS C 50 CG CD CE NZ REMARK 470 LYS C 59 CG CD CE NZ REMARK 470 ARG C 63 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 123 CG CD CE NZ REMARK 470 LYS D 36 CG CD CE NZ REMARK 470 ASP D 53 CG OD1 OD2 REMARK 470 LYS D 59 CG CD CE NZ REMARK 470 ARG D 63 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 76 CG CD CE NZ REMARK 470 ASN D 102 CG OD1 ND2 REMARK 470 GLN D 103 CG CD OE1 NE2 REMARK 470 ASN D 122 CG OD1 ND2 REMARK 470 LYS D 123 CG CD CE NZ REMARK 470 GLU E 4 CG CD OE1 OE2 REMARK 470 LYS E 5 CG CD CE NZ REMARK 470 ARG E 17 CG CD NE CZ NH1 NH2 REMARK 470 LYS E 36 CG CD CE NZ REMARK 470 ASN E 37 CG OD1 ND2 REMARK 470 ASP E 53 CG OD1 OD2 REMARK 470 LYS E 59 CG CD CE NZ REMARK 470 GLU E 60 CG CD OE1 OE2 REMARK 470 ARG E 63 CG CD NE CZ NH1 NH2 REMARK 470 LYS E 64 CG CD CE NZ REMARK 470 LEU E 86 CG CD1 CD2 REMARK 470 ASN E 122 CG OD1 ND2 REMARK 470 LYS E 123 CG CD CE NZ REMARK 470 GLU F 4 CG CD OE1 OE2 REMARK 470 LYS F 5 CG CD CE NZ REMARK 470 GLN F 18 CG CD OE1 NE2 REMARK 470 LYS F 36 CG CD CE NZ REMARK 470 LYS F 50 CG CD CE NZ REMARK 470 LYS F 59 CG CD CE NZ REMARK 470 GLU F 117 CG CD OE1 OE2 REMARK 470 LYS F 123 CG CD CE NZ REMARK 470 ASP X 3 CG OD1 OD2 REMARK 470 TYR X 7 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP X 8 CG OD1 OD2 REMARK 470 ASP Y 3 CG OD1 OD2 REMARK 470 TYR Y 7 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP Y 8 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR B 20 OE1 GLN B 110 1.95 REMARK 500 OH TYR A 20 OE1 GLN A 110 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 116 C - N - CA ANGL. DEV. = 10.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 3 -43.88 -141.23 REMARK 500 GLU A 4 129.53 101.06 REMARK 500 ALA B 26 77.79 -152.23 REMARK 500 HIS C 79 119.07 -171.77 REMARK 500 VAL C 120 107.47 -56.34 REMARK 500 ALA D 26 68.72 -155.78 REMARK 500 ASN D 69 71.63 46.02 REMARK 500 LEU D 86 150.58 -47.26 REMARK 500 ASN D 122 65.84 -69.75 REMARK 500 VAL D 137 -55.76 -127.71 REMARK 500 GLN E 25 -79.97 -81.57 REMARK 500 ASP E 28 14.79 -63.60 REMARK 500 GLN E 58 -39.83 -24.94 REMARK 500 ASN E 69 85.66 61.04 REMARK 500 THR E 85 -163.04 -125.82 REMARK 500 ALA F 26 76.86 -153.92 REMARK 500 THR F 85 -155.33 -141.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 9T24 RELATED DB: PDB DBREF 29WM A 1 140 UNP Q13283 G3BP1_HUMAN 1 140 DBREF 29WM B 1 140 UNP Q13283 G3BP1_HUMAN 1 140 DBREF 29WM C 1 140 UNP Q13283 G3BP1_HUMAN 1 140 DBREF 29WM D 1 140 UNP Q13283 G3BP1_HUMAN 1 140 DBREF 29WM E 1 140 UNP Q13283 G3BP1_HUMAN 1 140 DBREF 29WM F 1 140 UNP Q13283 G3BP1_HUMAN 1 140 DBREF 29WM X 3 10 UNP P04873 NCAP_BUNLC 3 10 DBREF 29WM Y 3 10 UNP P04873 NCAP_BUNLC 3 10 SEQADV 29WM GLY A 0 UNP Q13283 EXPRESSION TAG SEQADV 29WM GLY B 0 UNP Q13283 EXPRESSION TAG SEQADV 29WM GLY C 0 UNP Q13283 EXPRESSION TAG SEQADV 29WM GLY D 0 UNP Q13283 EXPRESSION TAG SEQADV 29WM GLY E 0 UNP Q13283 EXPRESSION TAG SEQADV 29WM GLY F 0 UNP Q13283 EXPRESSION TAG SEQRES 1 A 141 GLY MET VAL MET GLU LYS PRO SER PRO LEU LEU VAL GLY SEQRES 2 A 141 ARG GLU PHE VAL ARG GLN TYR TYR THR LEU LEU ASN GLN SEQRES 3 A 141 ALA PRO ASP MET LEU HIS ARG PHE TYR GLY LYS ASN SER SEQRES 4 A 141 SER TYR VAL HIS GLY GLY LEU ASP SER ASN GLY LYS PRO SEQRES 5 A 141 ALA ASP ALA VAL TYR GLY GLN LYS GLU ILE HIS ARG LYS SEQRES 6 A 141 VAL MET SER GLN ASN PHE THR ASN CYS HIS THR LYS ILE SEQRES 7 A 141 ARG HIS VAL ASP ALA HIS ALA THR LEU ASN ASP GLY VAL SEQRES 8 A 141 VAL VAL GLN VAL MET GLY LEU LEU SER ASN ASN ASN GLN SEQRES 9 A 141 ALA LEU ARG ARG PHE MET GLN THR PHE VAL LEU ALA PRO SEQRES 10 A 141 GLU GLY SER VAL ALA ASN LYS PHE TYR VAL HIS ASN ASP SEQRES 11 A 141 ILE PHE ARG TYR GLN ASP GLU VAL PHE GLY GLY SEQRES 1 B 141 GLY MET VAL MET GLU LYS PRO SER PRO LEU LEU VAL GLY SEQRES 2 B 141 ARG GLU PHE VAL ARG GLN TYR TYR THR LEU LEU ASN GLN SEQRES 3 B 141 ALA PRO ASP MET LEU HIS ARG PHE TYR GLY LYS ASN SER SEQRES 4 B 141 SER TYR VAL HIS GLY GLY LEU ASP SER ASN GLY LYS PRO SEQRES 5 B 141 ALA ASP ALA VAL TYR GLY GLN LYS GLU ILE HIS ARG LYS SEQRES 6 B 141 VAL MET SER GLN ASN PHE THR ASN CYS HIS THR LYS ILE SEQRES 7 B 141 ARG HIS VAL ASP ALA HIS ALA THR LEU ASN ASP GLY VAL SEQRES 8 B 141 VAL VAL GLN VAL MET GLY LEU LEU SER ASN ASN ASN GLN SEQRES 9 B 141 ALA LEU ARG ARG PHE MET GLN THR PHE VAL LEU ALA PRO SEQRES 10 B 141 GLU GLY SER VAL ALA ASN LYS PHE TYR VAL HIS ASN ASP SEQRES 11 B 141 ILE PHE ARG TYR GLN ASP GLU VAL PHE GLY GLY SEQRES 1 C 141 GLY MET VAL MET GLU LYS PRO SER PRO LEU LEU VAL GLY SEQRES 2 C 141 ARG GLU PHE VAL ARG GLN TYR TYR THR LEU LEU ASN GLN SEQRES 3 C 141 ALA PRO ASP MET LEU HIS ARG PHE TYR GLY LYS ASN SER SEQRES 4 C 141 SER TYR VAL HIS GLY GLY LEU ASP SER ASN GLY LYS PRO SEQRES 5 C 141 ALA ASP ALA VAL TYR GLY GLN LYS GLU ILE HIS ARG LYS SEQRES 6 C 141 VAL MET SER GLN ASN PHE THR ASN CYS HIS THR LYS ILE SEQRES 7 C 141 ARG HIS VAL ASP ALA HIS ALA THR LEU ASN ASP GLY VAL SEQRES 8 C 141 VAL VAL GLN VAL MET GLY LEU LEU SER ASN ASN ASN GLN SEQRES 9 C 141 ALA LEU ARG ARG PHE MET GLN THR PHE VAL LEU ALA PRO SEQRES 10 C 141 GLU GLY SER VAL ALA ASN LYS PHE TYR VAL HIS ASN ASP SEQRES 11 C 141 ILE PHE ARG TYR GLN ASP GLU VAL PHE GLY GLY SEQRES 1 D 141 GLY MET VAL MET GLU LYS PRO SER PRO LEU LEU VAL GLY SEQRES 2 D 141 ARG GLU PHE VAL ARG GLN TYR TYR THR LEU LEU ASN GLN SEQRES 3 D 141 ALA PRO ASP MET LEU HIS ARG PHE TYR GLY LYS ASN SER SEQRES 4 D 141 SER TYR VAL HIS GLY GLY LEU ASP SER ASN GLY LYS PRO SEQRES 5 D 141 ALA ASP ALA VAL TYR GLY GLN LYS GLU ILE HIS ARG LYS SEQRES 6 D 141 VAL MET SER GLN ASN PHE THR ASN CYS HIS THR LYS ILE SEQRES 7 D 141 ARG HIS VAL ASP ALA HIS ALA THR LEU ASN ASP GLY VAL SEQRES 8 D 141 VAL VAL GLN VAL MET GLY LEU LEU SER ASN ASN ASN GLN SEQRES 9 D 141 ALA LEU ARG ARG PHE MET GLN THR PHE VAL LEU ALA PRO SEQRES 10 D 141 GLU GLY SER VAL ALA ASN LYS PHE TYR VAL HIS ASN ASP SEQRES 11 D 141 ILE PHE ARG TYR GLN ASP GLU VAL PHE GLY GLY SEQRES 1 E 141 GLY MET VAL MET GLU LYS PRO SER PRO LEU LEU VAL GLY SEQRES 2 E 141 ARG GLU PHE VAL ARG GLN TYR TYR THR LEU LEU ASN GLN SEQRES 3 E 141 ALA PRO ASP MET LEU HIS ARG PHE TYR GLY LYS ASN SER SEQRES 4 E 141 SER TYR VAL HIS GLY GLY LEU ASP SER ASN GLY LYS PRO SEQRES 5 E 141 ALA ASP ALA VAL TYR GLY GLN LYS GLU ILE HIS ARG LYS SEQRES 6 E 141 VAL MET SER GLN ASN PHE THR ASN CYS HIS THR LYS ILE SEQRES 7 E 141 ARG HIS VAL ASP ALA HIS ALA THR LEU ASN ASP GLY VAL SEQRES 8 E 141 VAL VAL GLN VAL MET GLY LEU LEU SER ASN ASN ASN GLN SEQRES 9 E 141 ALA LEU ARG ARG PHE MET GLN THR PHE VAL LEU ALA PRO SEQRES 10 E 141 GLU GLY SER VAL ALA ASN LYS PHE TYR VAL HIS ASN ASP SEQRES 11 E 141 ILE PHE ARG TYR GLN ASP GLU VAL PHE GLY GLY SEQRES 1 F 141 GLY MET VAL MET GLU LYS PRO SER PRO LEU LEU VAL GLY SEQRES 2 F 141 ARG GLU PHE VAL ARG GLN TYR TYR THR LEU LEU ASN GLN SEQRES 3 F 141 ALA PRO ASP MET LEU HIS ARG PHE TYR GLY LYS ASN SER SEQRES 4 F 141 SER TYR VAL HIS GLY GLY LEU ASP SER ASN GLY LYS PRO SEQRES 5 F 141 ALA ASP ALA VAL TYR GLY GLN LYS GLU ILE HIS ARG LYS SEQRES 6 F 141 VAL MET SER GLN ASN PHE THR ASN CYS HIS THR LYS ILE SEQRES 7 F 141 ARG HIS VAL ASP ALA HIS ALA THR LEU ASN ASP GLY VAL SEQRES 8 F 141 VAL VAL GLN VAL MET GLY LEU LEU SER ASN ASN ASN GLN SEQRES 9 F 141 ALA LEU ARG ARG PHE MET GLN THR PHE VAL LEU ALA PRO SEQRES 10 F 141 GLU GLY SER VAL ALA ASN LYS PHE TYR VAL HIS ASN ASP SEQRES 11 F 141 ILE PHE ARG TYR GLN ASP GLU VAL PHE GLY GLY SEQRES 1 X 8 ASP LEU VAL PHE TYR ASP VAL ALA SEQRES 1 Y 8 ASP LEU VAL PHE TYR ASP VAL ALA HELIX 1 AA1 SER A 7 ALA A 26 1 20 HELIX 2 AA2 PRO A 27 ARG A 32 5 6 HELIX 3 AA3 GLY A 57 GLN A 68 1 12 HELIX 4 AA4 LEU A 86 ASP A 88 5 3 HELIX 5 AA5 GLN A 134 PHE A 138 1 5 HELIX 6 AA6 SER B 7 ALA B 26 1 20 HELIX 7 AA7 PRO B 27 TYR B 34 5 8 HELIX 8 AA8 GLY B 57 ASN B 69 1 13 HELIX 9 AA9 LEU B 86 ASP B 88 5 3 HELIX 10 AB1 SER C 7 ALA C 26 1 20 HELIX 11 AB2 PRO C 27 ARG C 32 5 6 HELIX 12 AB3 GLY C 57 SER C 67 1 11 HELIX 13 AB4 LEU C 86 ASP C 88 5 3 HELIX 14 AB5 ASP C 135 VAL C 137 5 3 HELIX 15 AB6 SER D 7 ALA D 26 1 20 HELIX 16 AB7 PRO D 27 ARG D 32 5 6 HELIX 17 AB8 GLY D 57 GLN D 68 1 12 HELIX 18 AB9 LEU D 86 ASP D 88 5 3 HELIX 19 AC1 SER E 7 GLN E 25 1 19 HELIX 20 AC2 ALA E 26 PHE E 33 5 8 HELIX 21 AC3 GLY E 57 ASN E 69 1 13 HELIX 22 AC4 ASP E 135 VAL E 137 5 3 HELIX 23 AC5 SER F 7 ALA F 26 1 20 HELIX 24 AC6 PRO F 27 ARG F 32 5 6 HELIX 25 AC7 GLY F 57 GLN F 68 1 12 HELIX 26 AC8 LEU F 86 ASP F 88 5 3 SHEET 1 AA1 6 VAL A 55 TYR A 56 0 SHEET 2 AA1 6 TYR A 34 HIS A 42 -1 N TYR A 40 O VAL A 55 SHEET 3 AA1 6 PHE A 124 TYR A 133 1 O ASP A 129 N VAL A 41 SHEET 4 AA1 6 ARG A 106 PRO A 116 -1 N VAL A 113 O HIS A 127 SHEET 5 AA1 6 VAL A 90 SER A 99 -1 N VAL A 90 O LEU A 114 SHEET 6 AA1 6 HIS A 74 ALA A 84 -1 N ASP A 81 O GLN A 93 SHEET 1 AA2 7 VAL B 55 TYR B 56 0 SHEET 2 AA2 7 SER B 39 HIS B 42 -1 N TYR B 40 O VAL B 55 SHEET 3 AA2 7 TYR B 125 TYR B 133 1 O ASP B 129 N VAL B 41 SHEET 4 AA2 7 ARG B 106 ALA B 115 -1 N ALA B 115 O TYR B 125 SHEET 5 AA2 7 VAL B 90 SER B 99 -1 N VAL B 90 O LEU B 114 SHEET 6 AA2 7 HIS B 74 ALA B 84 -1 N ASP B 81 O GLN B 93 SHEET 7 AA2 7 MET C 1 MET C 3 1 O VAL C 2 N THR B 75 SHEET 1 AA3 6 VAL C 55 TYR C 56 0 SHEET 2 AA3 6 TYR C 34 HIS C 42 -1 N TYR C 40 O VAL C 55 SHEET 3 AA3 6 PHE C 124 TYR C 133 1 O HIS C 127 N SER C 39 SHEET 4 AA3 6 ARG C 106 PRO C 116 -1 N ALA C 115 O TYR C 125 SHEET 5 AA3 6 VAL C 90 SER C 99 -1 N VAL C 90 O LEU C 114 SHEET 6 AA3 6 HIS C 74 ALA C 84 -1 N LYS C 76 O LEU C 97 SHEET 1 AA4 6 VAL D 55 TYR D 56 0 SHEET 2 AA4 6 TYR D 34 VAL D 41 -1 N TYR D 40 O VAL D 55 SHEET 3 AA4 6 TYR D 125 TYR D 133 1 O ASP D 129 N VAL D 41 SHEET 4 AA4 6 ARG D 106 ALA D 115 -1 N VAL D 113 O HIS D 127 SHEET 5 AA4 6 GLY D 89 SER D 99 -1 N VAL D 90 O LEU D 114 SHEET 6 AA4 6 HIS D 74 THR D 85 -1 N ASP D 81 O GLN D 93 SHEET 1 AA5 6 VAL E 55 TYR E 56 0 SHEET 2 AA5 6 SER E 39 VAL E 41 -1 N TYR E 40 O VAL E 55 SHEET 3 AA5 6 TYR E 125 TYR E 133 1 O ASP E 129 N VAL E 41 SHEET 4 AA5 6 ARG E 106 ALA E 115 -1 N ALA E 115 O TYR E 125 SHEET 5 AA5 6 GLY E 89 SER E 99 -1 N VAL E 90 O LEU E 114 SHEET 6 AA5 6 HIS E 74 THR E 85 -1 N THR E 85 O GLY E 89 SHEET 1 AA6 6 VAL F 55 TYR F 56 0 SHEET 2 AA6 6 TYR F 34 HIS F 42 -1 N TYR F 40 O VAL F 55 SHEET 3 AA6 6 VAL F 126 TYR F 133 1 O PHE F 131 N VAL F 41 SHEET 4 AA6 6 ARG F 106 LEU F 114 -1 N MET F 109 O ARG F 132 SHEET 5 AA6 6 VAL F 90 SER F 99 -1 N VAL F 90 O LEU F 114 SHEET 6 AA6 6 HIS F 74 ALA F 84 -1 N ASP F 81 O GLN F 93 CRYST1 83.099 94.507 113.331 90.00 90.00 90.00 P 21 21 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012034 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010581 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008824 0.00000 MASTER 450 0 0 26 37 0 0 6 6179 8 0 68 END