data_2A0P # _entry.id 2A0P # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.376 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2A0P pdb_00002a0p 10.2210/pdb2a0p/pdb NDB AR0063 ? ? RCSB RCSB033345 ? ? WWPDB D_1000033345 ? ? # _pdbx_database_status.entry_id 2A0P _pdbx_database_status.status_code REL _pdbx_database_status.recvd_initial_deposition_date 2005-06-16 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry N _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Haeberli, P.' 1 'Berger, I.' 2 'Pallan, P.S.' 3 'Egli, M.' 4 # _citation.id primary _citation.title ;Syntheses of 4'-thioribonucleosides and thermodynamic stability and crystal structure of RNA oligomers with incorporated 4'-thiocytosine ; _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 33 _citation.page_first 3965 _citation.page_last 3975 _citation.year 2005 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16027443 _citation.pdbx_database_id_DOI 10.1093/nar/gki704 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Haeberli, P.' 1 ? primary 'Berger, I.' 2 ? primary 'Pallan, P.S.' 3 ? primary 'Egli, M.' 4 ? # _cell.entry_id 2A0P _cell.length_a 42.440 _cell.length_b 42.440 _cell.length_c 127.660 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2A0P _symmetry.space_group_name_H-M 'H 3 2' _symmetry.cell_setting rhombohedral _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-R(*CP*CP*(S4C)P*CP*GP*GP*GP*G)-3'" 2572.658 2 ? ? ? ? 2 water nat water 18.015 69 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'CC(S4C)CGGGG' _entity_poly.pdbx_seq_one_letter_code_can CCCCGGGG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C n 1 2 C n 1 3 S4C n 1 4 C n 1 5 G n 1 6 G n 1 7 G n 1 8 G n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'synthesis route see publication' # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 2A0P _struct_ref.pdbx_db_accession 2A0P _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2A0P A 1 ? 8 ? 2A0P 1 ? 8 ? 1 8 2 1 2A0P B 1 ? 8 ? 2A0P 9 ? 16 ? 9 16 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 S4C 'RNA linking' n "4'-THIO-4'-DEOXY-CYTOSINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P S' 339.262 # _exptl.entry_id 2A0P _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.15 _exptl_crystal.density_percent_sol 42.79 _exptl_crystal.density_meas ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details 'Cond 39 Hampton Screen I, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 128 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IIC' _diffrn_detector.pdbx_collection_date 1997 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type RIGAKU _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 2A0P _reflns.observed_criterion_sigma_I 2. _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low ? _reflns.d_resolution_high 1.95 _reflns.number_obs 3077 _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs 0.067 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 2A0P _refine.ls_number_reflns_obs 3077 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 25 _refine.ls_d_res_high 1.95 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.2021 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.202 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 259D _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.ls_redundancy_reflns_obs ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 397 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 69 _refine_hist.number_atoms_total 466 _refine_hist.d_res_high 1.95 _refine_hist.d_res_low 25 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.03 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 3.8 ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 2A0P _struct.title ;Crystal structure of RNA oligomer containing 4'-thioribose ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2A0P _struct_keywords.pdbx_keywords RNA _struct_keywords.text ;A-RNA; DOUBLE HELIX; RIBONUCLEIC ACID; 4'-THIO RNA, RNA ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A C 2 "O3'" ? ? ? 1_555 A S4C 3 P ? ? A C 2 A S4C 3 1_555 ? ? ? ? ? ? ? 1.644 ? ? covale2 covale one ? A S4C 3 "O3'" ? ? ? 1_555 A C 4 P ? ? A S4C 3 A C 4 1_555 ? ? ? ? ? ? ? 1.670 ? ? covale3 covale both ? B C 2 "O3'" ? ? ? 1_555 B S4C 3 P ? ? B C 10 B S4C 11 1_555 ? ? ? ? ? ? ? 1.604 ? ? covale4 covale one ? B S4C 3 "O3'" ? ? ? 1_555 B C 4 P ? ? B S4C 11 B C 12 1_555 ? ? ? ? ? ? ? 1.625 ? ? hydrog1 hydrog ? ? A C 1 N3 ? ? ? 1_555 B G 8 N1 ? ? A C 1 B G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C 1 N4 ? ? ? 1_555 B G 8 O6 ? ? A C 1 B G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 1 O2 ? ? ? 1_555 B G 8 N2 ? ? A C 1 B G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 2 N3 ? ? ? 1_555 B G 7 N1 ? ? A C 2 B G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 2 N4 ? ? ? 1_555 B G 7 O6 ? ? A C 2 B G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 2 O2 ? ? ? 1_555 B G 7 N2 ? ? A C 2 B G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A S4C 3 N3 ? ? ? 1_555 B G 6 N1 ? ? A S4C 3 B G 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A S4C 3 N4 ? ? ? 1_555 B G 6 O6 ? ? A S4C 3 B G 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A S4C 3 O2 ? ? ? 1_555 B G 6 N2 ? ? A S4C 3 B G 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 4 N3 ? ? ? 1_555 B G 5 N1 ? ? A C 4 B G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 4 N4 ? ? ? 1_555 B G 5 O6 ? ? A C 4 B G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 4 O2 ? ? ? 1_555 B G 5 N2 ? ? A C 4 B G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 5 N1 ? ? ? 1_555 B C 4 N3 ? ? A G 5 B C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 5 N2 ? ? ? 1_555 B C 4 O2 ? ? A G 5 B C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 5 O6 ? ? ? 1_555 B C 4 N4 ? ? A G 5 B C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 6 N1 ? ? ? 1_555 B S4C 3 N3 ? ? A G 6 B S4C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 6 N2 ? ? ? 1_555 B S4C 3 O2 ? ? A G 6 B S4C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 6 O6 ? ? ? 1_555 B S4C 3 N4 ? ? A G 6 B S4C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 7 N1 ? ? ? 1_555 B C 2 N3 ? ? A G 7 B C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 7 N2 ? ? ? 1_555 B C 2 O2 ? ? A G 7 B C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 7 O6 ? ? ? 1_555 B C 2 N4 ? ? A G 7 B C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 8 N1 ? ? ? 1_555 B C 1 N3 ? ? A G 8 B C 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 8 N2 ? ? ? 1_555 B C 1 O2 ? ? A G 8 B C 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 8 O6 ? ? ? 1_555 B C 1 N4 ? ? A G 8 B C 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _atom_sites.entry_id 2A0P _atom_sites.fract_transf_matrix[1][1] 0.023563 _atom_sites.fract_transf_matrix[1][2] 0.013604 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.027208 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007833 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C 1 1 1 C C A . n A 1 2 C 2 2 2 C C A . n A 1 3 S4C 3 3 3 S4C S4C A . n A 1 4 C 4 4 4 C C A . n A 1 5 G 5 5 5 G G A . n A 1 6 G 6 6 6 G G A . n A 1 7 G 7 7 7 G G A . n A 1 8 G 8 8 8 G G A . n B 1 1 C 1 9 9 C C B . n B 1 2 C 2 10 10 C C B . n B 1 3 S4C 3 11 11 S4C S4C B . n B 1 4 C 4 12 12 C C B . n B 1 5 G 5 13 13 G G B . n B 1 6 G 6 14 14 G G B . n B 1 7 G 7 15 15 G G B . n B 1 8 G 8 16 16 G G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 102 102 HOH HOH A . C 2 HOH 2 103 103 HOH HOH A . C 2 HOH 3 104 104 HOH HOH A . C 2 HOH 4 105 105 HOH HOH A . C 2 HOH 5 106 106 HOH HOH A . C 2 HOH 6 109 109 HOH HOH A . C 2 HOH 7 110 110 HOH HOH A . C 2 HOH 8 112 112 HOH HOH A . C 2 HOH 9 114 114 HOH HOH A . C 2 HOH 10 115 115 HOH HOH A . C 2 HOH 11 117 117 HOH HOH A . C 2 HOH 12 118 118 HOH HOH A . C 2 HOH 13 119 119 HOH HOH A . C 2 HOH 14 122 122 HOH HOH A . C 2 HOH 15 125 125 HOH HOH A . C 2 HOH 16 126 126 HOH HOH A . C 2 HOH 17 132 132 HOH HOH A . C 2 HOH 18 133 133 HOH HOH A . C 2 HOH 19 134 134 HOH HOH A . C 2 HOH 20 135 135 HOH HOH A . C 2 HOH 21 139 139 HOH HOH A . C 2 HOH 22 143 143 HOH HOH A . C 2 HOH 23 147 147 HOH HOH A . C 2 HOH 24 148 148 HOH HOH A . C 2 HOH 25 149 149 HOH HOH A . C 2 HOH 26 150 150 HOH HOH A . C 2 HOH 27 151 151 HOH HOH A . C 2 HOH 28 152 152 HOH HOH A . C 2 HOH 29 153 153 HOH HOH A . C 2 HOH 30 160 160 HOH HOH A . C 2 HOH 31 162 162 HOH HOH A . C 2 HOH 32 163 163 HOH HOH A . C 2 HOH 33 167 167 HOH HOH A . C 2 HOH 34 168 168 HOH HOH A . C 2 HOH 35 169 169 HOH HOH A . D 2 HOH 1 101 101 HOH HOH B . D 2 HOH 2 107 107 HOH HOH B . D 2 HOH 3 108 108 HOH HOH B . D 2 HOH 4 111 111 HOH HOH B . D 2 HOH 5 113 113 HOH HOH B . D 2 HOH 6 116 116 HOH HOH B . D 2 HOH 7 120 120 HOH HOH B . D 2 HOH 8 121 121 HOH HOH B . D 2 HOH 9 123 123 HOH HOH B . D 2 HOH 10 124 124 HOH HOH B . D 2 HOH 11 127 127 HOH HOH B . D 2 HOH 12 128 128 HOH HOH B . D 2 HOH 13 129 129 HOH HOH B . D 2 HOH 14 130 130 HOH HOH B . D 2 HOH 15 131 131 HOH HOH B . D 2 HOH 16 136 136 HOH HOH B . D 2 HOH 17 137 137 HOH HOH B . D 2 HOH 18 138 138 HOH HOH B . D 2 HOH 19 140 140 HOH HOH B . D 2 HOH 20 141 141 HOH HOH B . D 2 HOH 21 142 142 HOH HOH B . D 2 HOH 22 144 144 HOH HOH B . D 2 HOH 23 145 145 HOH HOH B . D 2 HOH 24 146 146 HOH HOH B . D 2 HOH 25 154 154 HOH HOH B . D 2 HOH 26 155 155 HOH HOH B . D 2 HOH 27 156 156 HOH HOH B . D 2 HOH 28 157 157 HOH HOH B . D 2 HOH 29 158 158 HOH HOH B . D 2 HOH 30 159 159 HOH HOH B . D 2 HOH 31 161 161 HOH HOH B . D 2 HOH 32 164 164 HOH HOH B . D 2 HOH 33 165 165 HOH HOH B . D 2 HOH 34 166 166 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A S4C 3 A S4C 3 ? C ? 2 B S4C 3 B S4C 11 ? C ? # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 151 ? C HOH . 2 1 A HOH 168 ? C HOH . 3 1 A HOH 169 ? C HOH . 4 1 B HOH 144 ? D HOH . 5 1 B HOH 158 ? D HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-08-16 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-08-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 X-PLOR 'model building' . ? 3 X-PLOR refinement . ? 4 X-PLOR phasing . ? 5 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 H22 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 G _pdbx_validate_close_contact.auth_seq_id_1 7 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O2 _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 C _pdbx_validate_close_contact.auth_seq_id_2 10 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.59 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C4'" A C 1 ? ? "C3'" A C 1 ? ? 1.454 1.521 -0.067 0.010 N 2 1 "C3'" A C 1 ? ? "C2'" A C 1 ? ? 1.455 1.523 -0.068 0.011 N 3 1 "C2'" A C 1 ? ? "C1'" A C 1 ? ? 1.471 1.526 -0.055 0.008 N 4 1 "O4'" A C 2 ? ? "C1'" A C 2 ? ? 1.507 1.415 0.092 0.012 N 5 1 "C2'" A C 2 ? ? "O2'" A C 2 ? ? 1.502 1.420 0.082 0.010 N 6 1 N3 A C 2 ? ? C4 A C 2 ? ? 1.291 1.335 -0.044 0.007 N 7 1 "O5'" A C 4 ? ? "C5'" A C 4 ? ? 1.363 1.420 -0.057 0.009 N 8 1 "C3'" A G 5 ? ? "C2'" A G 5 ? ? 1.447 1.523 -0.076 0.011 N 9 1 C4 A G 5 ? ? C5 A G 5 ? ? 1.334 1.379 -0.045 0.007 N 10 1 C5 A G 5 ? ? C6 A G 5 ? ? 1.343 1.419 -0.076 0.010 N 11 1 C5 A G 6 ? ? N7 A G 6 ? ? 1.452 1.388 0.064 0.006 N 12 1 P A G 7 ? ? "O5'" A G 7 ? ? 1.671 1.593 0.078 0.010 N 13 1 "C2'" A G 7 ? ? "C1'" A G 7 ? ? 1.444 1.526 -0.082 0.008 N 14 1 N3 A G 7 ? ? C4 A G 7 ? ? 1.404 1.350 0.054 0.007 N 15 1 P A G 8 ? ? "O5'" A G 8 ? ? 1.533 1.593 -0.060 0.010 N 16 1 "C2'" A G 8 ? ? "C1'" A G 8 ? ? 1.432 1.526 -0.094 0.008 N 17 1 N1 A G 8 ? ? C2 A G 8 ? ? 1.287 1.373 -0.086 0.008 N 18 1 C4 A G 8 ? ? C5 A G 8 ? ? 1.317 1.379 -0.062 0.007 N 19 1 C6 A G 8 ? ? N1 A G 8 ? ? 1.348 1.391 -0.043 0.007 N 20 1 C5 A G 8 ? ? N7 A G 8 ? ? 1.424 1.388 0.036 0.006 N 21 1 "C3'" B C 10 ? ? "C2'" B C 10 ? ? 1.437 1.523 -0.086 0.011 N 22 1 N1 B C 10 ? ? C2 B C 10 ? ? 1.295 1.397 -0.102 0.010 N 23 1 N1 B C 10 ? ? C6 B C 10 ? ? 1.328 1.367 -0.039 0.006 N 24 1 N3 B C 10 ? ? C4 B C 10 ? ? 1.252 1.335 -0.083 0.007 N 25 1 P B C 12 ? ? "O5'" B C 12 ? ? 1.654 1.593 0.061 0.010 N 26 1 N1 B C 12 ? ? C6 B C 12 ? ? 1.327 1.367 -0.040 0.006 N 27 1 "C5'" B G 13 ? ? "C4'" B G 13 ? ? 1.466 1.508 -0.042 0.007 N 28 1 C5 B G 13 ? ? C6 B G 13 ? ? 1.346 1.419 -0.073 0.010 N 29 1 C5 B G 13 ? ? N7 B G 13 ? ? 1.433 1.388 0.045 0.006 N 30 1 "C2'" B G 14 ? ? "C1'" B G 14 ? ? 1.478 1.526 -0.048 0.008 N 31 1 "C2'" B G 15 ? ? "C1'" B G 15 ? ? 1.469 1.526 -0.057 0.008 N 32 1 C6 B G 15 ? ? N1 B G 15 ? ? 1.336 1.391 -0.055 0.007 N 33 1 C8 B G 15 ? ? N9 B G 15 ? ? 1.319 1.374 -0.055 0.007 N 34 1 P B G 16 ? ? "O5'" B G 16 ? ? 1.521 1.593 -0.072 0.010 N 35 1 "C3'" B G 16 ? ? "C2'" B G 16 ? ? 1.453 1.523 -0.070 0.011 N 36 1 "O4'" B G 16 ? ? "C1'" B G 16 ? ? 1.497 1.415 0.082 0.012 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A C 1 ? ? "C4'" A C 1 ? ? "C3'" A C 1 ? ? 95.95 104.00 -8.05 1.00 N 2 1 "C1'" A C 1 ? ? "O4'" A C 1 ? ? "C4'" A C 1 ? ? 116.54 109.90 6.64 0.80 N 3 1 "O4'" A C 1 ? ? "C1'" A C 1 ? ? "C2'" A C 1 ? ? 98.83 105.80 -6.97 1.00 N 4 1 N1 A C 1 ? ? C2 A C 1 ? ? O2 A C 1 ? ? 122.54 118.90 3.64 0.60 N 5 1 N3 A C 1 ? ? C2 A C 1 ? ? O2 A C 1 ? ? 116.73 121.90 -5.17 0.70 N 6 1 "O4'" A C 2 ? ? "C4'" A C 2 ? ? "C3'" A C 2 ? ? 96.31 104.00 -7.69 1.00 N 7 1 N1 A C 2 ? ? C2 A C 2 ? ? O2 A C 2 ? ? 123.35 118.90 4.45 0.60 N 8 1 "O3'" A S4C 3 ? ? P A C 4 ? ? OP2 A C 4 ? ? 123.61 110.50 13.11 1.10 Y 9 1 "O4'" A G 5 ? ? "C4'" A G 5 ? ? "C3'" A G 5 ? ? 96.63 104.00 -7.37 1.00 N 10 1 "O4'" A G 5 ? ? "C1'" A G 5 ? ? N9 A G 5 ? ? 102.94 108.20 -5.26 0.80 N 11 1 N1 A G 5 ? ? C6 A G 5 ? ? O6 A G 5 ? ? 125.36 119.90 5.46 0.60 N 12 1 C5 A G 5 ? ? C6 A G 5 ? ? O6 A G 5 ? ? 123.47 128.60 -5.13 0.60 N 13 1 "O4'" A G 6 ? ? "C4'" A G 6 ? ? "C3'" A G 6 ? ? 96.86 104.00 -7.14 1.00 N 14 1 "C1'" A G 6 ? ? "O4'" A G 6 ? ? "C4'" A G 6 ? ? 114.96 109.90 5.06 0.80 N 15 1 "O4'" A G 6 ? ? "C1'" A G 6 ? ? "C2'" A G 6 ? ? 99.02 105.80 -6.78 1.00 N 16 1 C5 A G 6 ? ? N7 A G 6 ? ? C8 A G 6 ? ? 99.67 104.30 -4.63 0.50 N 17 1 "C3'" A G 6 ? ? "O3'" A G 6 ? ? P A G 7 ? ? 128.40 119.70 8.70 1.20 Y 18 1 "O4'" A G 7 ? ? "C4'" A G 7 ? ? "C3'" A G 7 ? ? 94.00 104.00 -10.00 1.00 N 19 1 "C1'" A G 7 ? ? "O4'" A G 7 ? ? "C4'" A G 7 ? ? 115.71 109.90 5.81 0.80 N 20 1 N9 A G 7 ? ? "C1'" A G 7 ? ? "C2'" A G 7 ? ? 101.56 112.00 -10.44 1.10 N 21 1 "O4'" A G 7 ? ? "C1'" A G 7 ? ? N9 A G 7 ? ? 114.03 108.50 5.53 0.70 N 22 1 C5 A G 7 ? ? N7 A G 7 ? ? C8 A G 7 ? ? 101.24 104.30 -3.06 0.50 N 23 1 N3 A G 7 ? ? C2 A G 7 ? ? N2 A G 7 ? ? 124.19 119.90 4.29 0.70 N 24 1 C5 A G 7 ? ? C6 A G 7 ? ? O6 A G 7 ? ? 123.89 128.60 -4.71 0.60 N 25 1 "O4'" A G 8 ? ? "C4'" A G 8 ? ? "C3'" A G 8 ? ? 95.50 104.00 -8.50 1.00 N 26 1 "C5'" A G 8 ? ? "C4'" A G 8 ? ? "O4'" A G 8 ? ? 117.30 109.80 7.50 0.90 N 27 1 "C1'" A G 8 ? ? "O4'" A G 8 ? ? "C4'" A G 8 ? ? 115.66 109.90 5.76 0.80 N 28 1 "O4'" B C 9 ? ? "C4'" B C 9 ? ? "C3'" B C 9 ? ? 91.70 104.00 -12.30 1.00 N 29 1 "C1'" B C 9 ? ? "O4'" B C 9 ? ? "C4'" B C 9 ? ? 114.86 109.90 4.96 0.80 N 30 1 "O4'" B C 9 ? ? "C1'" B C 9 ? ? "C2'" B C 9 ? ? 98.40 105.80 -7.40 1.00 N 31 1 "C3'" B C 9 ? ? "O3'" B C 9 ? ? P B C 10 ? ? 130.71 119.70 11.01 1.20 Y 32 1 "O5'" B C 10 ? ? "C5'" B C 10 ? ? "C4'" B C 10 ? ? 104.14 109.40 -5.26 0.80 N 33 1 "O4'" B C 10 ? ? "C4'" B C 10 ? ? "C3'" B C 10 ? ? 92.51 104.00 -11.49 1.00 N 34 1 "O4'" B C 10 ? ? "C1'" B C 10 ? ? "C2'" B C 10 ? ? 98.47 105.80 -7.33 1.00 N 35 1 "C3'" B S4C 11 ? ? "O3'" B S4C 11 ? ? P B C 12 ? ? 126.94 119.70 7.24 1.20 Y 36 1 "O3'" B S4C 11 ? ? P B C 12 ? ? OP2 B C 12 ? ? 117.84 110.50 7.34 1.10 Y 37 1 "C5'" B C 12 ? ? "C4'" B C 12 ? ? "C3'" B C 12 ? ? 103.08 115.20 -12.12 1.40 N 38 1 "C5'" B C 12 ? ? "C4'" B C 12 ? ? "O4'" B C 12 ? ? 117.00 109.80 7.20 0.90 N 39 1 N1 B C 12 ? ? "C1'" B C 12 ? ? "C2'" B C 12 ? ? 104.75 112.00 -7.25 1.10 N 40 1 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 120.21 108.50 11.71 0.70 N 41 1 N1 B C 12 ? ? C2 B C 12 ? ? O2 B C 12 ? ? 122.73 118.90 3.83 0.60 N 42 1 N3 B C 12 ? ? C2 B C 12 ? ? O2 B C 12 ? ? 117.63 121.90 -4.27 0.70 N 43 1 C4 B G 13 ? ? C5 B G 13 ? ? N7 B G 13 ? ? 114.64 110.80 3.84 0.40 N 44 1 C5 B G 13 ? ? N7 B G 13 ? ? C8 B G 13 ? ? 101.03 104.30 -3.27 0.50 N 45 1 N1 B G 13 ? ? C6 B G 13 ? ? O6 B G 13 ? ? 125.81 119.90 5.91 0.60 N 46 1 C5 B G 13 ? ? C6 B G 13 ? ? O6 B G 13 ? ? 120.79 128.60 -7.81 0.60 N 47 1 "O4'" B G 14 ? ? "C4'" B G 14 ? ? "C3'" B G 14 ? ? 97.53 104.00 -6.47 1.00 N 48 1 "O4'" B G 14 ? ? "C1'" B G 14 ? ? N9 B G 14 ? ? 102.56 108.20 -5.64 0.80 N 49 1 N1 B G 14 ? ? C6 B G 14 ? ? O6 B G 14 ? ? 115.42 119.90 -4.48 0.60 N 50 1 "O4'" B G 15 ? ? "C4'" B G 15 ? ? "C3'" B G 15 ? ? 95.70 104.00 -8.30 1.00 N 51 1 C4 B G 15 ? ? C5 B G 15 ? ? N7 B G 15 ? ? 107.96 110.80 -2.84 0.40 N 52 1 N3 B G 15 ? ? C2 B G 15 ? ? N2 B G 15 ? ? 114.76 119.90 -5.14 0.70 N 53 1 C5 B G 16 ? ? N7 B G 16 ? ? C8 B G 16 ? ? 107.56 104.30 3.26 0.50 N 54 1 N1 B G 16 ? ? C6 B G 16 ? ? O6 B G 16 ? ? 115.43 119.90 -4.47 0.60 N # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id G _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 8 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.053 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal C OP3 O N N 1 C P P N N 2 C OP1 O N N 3 C OP2 O N N 4 C "O5'" O N N 5 C "C5'" C N N 6 C "C4'" C N R 7 C "O4'" O N N 8 C "C3'" C N S 9 C "O3'" O N N 10 C "C2'" C N R 11 C "O2'" O N N 12 C "C1'" C N R 13 C N1 N N N 14 C C2 C N N 15 C O2 O N N 16 C N3 N N N 17 C C4 C N N 18 C N4 N N N 19 C C5 C N N 20 C C6 C N N 21 C HOP3 H N N 22 C HOP2 H N N 23 C "H5'" H N N 24 C "H5''" H N N 25 C "H4'" H N N 26 C "H3'" H N N 27 C "HO3'" H N N 28 C "H2'" H N N 29 C "HO2'" H N N 30 C "H1'" H N N 31 C H41 H N N 32 C H42 H N N 33 C H5 H N N 34 C H6 H N N 35 G OP3 O N N 36 G P P N N 37 G OP1 O N N 38 G OP2 O N N 39 G "O5'" O N N 40 G "C5'" C N N 41 G "C4'" C N R 42 G "O4'" O N N 43 G "C3'" C N S 44 G "O3'" O N N 45 G "C2'" C N R 46 G "O2'" O N N 47 G "C1'" C N R 48 G N9 N Y N 49 G C8 C Y N 50 G N7 N Y N 51 G C5 C Y N 52 G C6 C N N 53 G O6 O N N 54 G N1 N N N 55 G C2 C N N 56 G N2 N N N 57 G N3 N N N 58 G C4 C Y N 59 G HOP3 H N N 60 G HOP2 H N N 61 G "H5'" H N N 62 G "H5''" H N N 63 G "H4'" H N N 64 G "H3'" H N N 65 G "HO3'" H N N 66 G "H2'" H N N 67 G "HO2'" H N N 68 G "H1'" H N N 69 G H8 H N N 70 G H1 H N N 71 G H21 H N N 72 G H22 H N N 73 HOH O O N N 74 HOH H1 H N N 75 HOH H2 H N N 76 S4C N1 N N N 77 S4C C2 C N N 78 S4C O2 O N N 79 S4C N3 N N N 80 S4C "C1'" C N R 81 S4C C4 C N N 82 S4C N4 N N N 83 S4C C5 C N N 84 S4C C6 C N N 85 S4C "C2'" C N R 86 S4C "O2'" O N N 87 S4C "C3'" C N S 88 S4C "O3'" O N N 89 S4C "C4'" C N R 90 S4C "S4'" S N N 91 S4C OP1 O N N 92 S4C "C5'" C N N 93 S4C "O5'" O N N 94 S4C OP2 O N N 95 S4C P P N N 96 S4C OP3 O N N 97 S4C "H1'" H N N 98 S4C H41 H N N 99 S4C H42 H N N 100 S4C H5 H N N 101 S4C H6 H N N 102 S4C H1 H N N 103 S4C "H2'" H N N 104 S4C "H3'" H N N 105 S4C H2 H N N 106 S4C "H4'" H N N 107 S4C H1P H N N 108 S4C "H5'" H N N 109 S4C "H5''" H N N 110 S4C H2P H N N 111 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal C OP3 P sing N N 1 C OP3 HOP3 sing N N 2 C P OP1 doub N N 3 C P OP2 sing N N 4 C P "O5'" sing N N 5 C OP2 HOP2 sing N N 6 C "O5'" "C5'" sing N N 7 C "C5'" "C4'" sing N N 8 C "C5'" "H5'" sing N N 9 C "C5'" "H5''" sing N N 10 C "C4'" "O4'" sing N N 11 C "C4'" "C3'" sing N N 12 C "C4'" "H4'" sing N N 13 C "O4'" "C1'" sing N N 14 C "C3'" "O3'" sing N N 15 C "C3'" "C2'" sing N N 16 C "C3'" "H3'" sing N N 17 C "O3'" "HO3'" sing N N 18 C "C2'" "O2'" sing N N 19 C "C2'" "C1'" sing N N 20 C "C2'" "H2'" sing N N 21 C "O2'" "HO2'" sing N N 22 C "C1'" N1 sing N N 23 C "C1'" "H1'" sing N N 24 C N1 C2 sing N N 25 C N1 C6 sing N N 26 C C2 O2 doub N N 27 C C2 N3 sing N N 28 C N3 C4 doub N N 29 C C4 N4 sing N N 30 C C4 C5 sing N N 31 C N4 H41 sing N N 32 C N4 H42 sing N N 33 C C5 C6 doub N N 34 C C5 H5 sing N N 35 C C6 H6 sing N N 36 G OP3 P sing N N 37 G OP3 HOP3 sing N N 38 G P OP1 doub N N 39 G P OP2 sing N N 40 G P "O5'" sing N N 41 G OP2 HOP2 sing N N 42 G "O5'" "C5'" sing N N 43 G "C5'" "C4'" sing N N 44 G "C5'" "H5'" sing N N 45 G "C5'" "H5''" sing N N 46 G "C4'" "O4'" sing N N 47 G "C4'" "C3'" sing N N 48 G "C4'" "H4'" sing N N 49 G "O4'" "C1'" sing N N 50 G "C3'" "O3'" sing N N 51 G "C3'" "C2'" sing N N 52 G "C3'" "H3'" sing N N 53 G "O3'" "HO3'" sing N N 54 G "C2'" "O2'" sing N N 55 G "C2'" "C1'" sing N N 56 G "C2'" "H2'" sing N N 57 G "O2'" "HO2'" sing N N 58 G "C1'" N9 sing N N 59 G "C1'" "H1'" sing N N 60 G N9 C8 sing Y N 61 G N9 C4 sing Y N 62 G C8 N7 doub Y N 63 G C8 H8 sing N N 64 G N7 C5 sing Y N 65 G C5 C6 sing N N 66 G C5 C4 doub Y N 67 G C6 O6 doub N N 68 G C6 N1 sing N N 69 G N1 C2 sing N N 70 G N1 H1 sing N N 71 G C2 N2 sing N N 72 G C2 N3 doub N N 73 G N2 H21 sing N N 74 G N2 H22 sing N N 75 G N3 C4 sing N N 76 HOH O H1 sing N N 77 HOH O H2 sing N N 78 S4C N1 C2 sing N N 79 S4C N1 "C1'" sing N N 80 S4C N1 C6 sing N N 81 S4C C2 O2 doub N N 82 S4C C2 N3 sing N N 83 S4C N3 C4 doub N N 84 S4C "C1'" "C2'" sing N N 85 S4C "C1'" "S4'" sing N N 86 S4C "C1'" "H1'" sing N N 87 S4C C4 N4 sing N N 88 S4C C4 C5 sing N N 89 S4C N4 H41 sing N N 90 S4C N4 H42 sing N N 91 S4C C5 C6 doub N N 92 S4C C5 H5 sing N N 93 S4C C6 H6 sing N N 94 S4C "C2'" "O2'" sing N N 95 S4C "C2'" "C3'" sing N N 96 S4C "C2'" H1 sing N N 97 S4C "O2'" "H2'" sing N N 98 S4C "C3'" "O3'" sing N N 99 S4C "C3'" "C4'" sing N N 100 S4C "C3'" "H3'" sing N N 101 S4C "O3'" H2 sing N N 102 S4C "C4'" "S4'" sing N N 103 S4C "C4'" "C5'" sing N N 104 S4C "C4'" "H4'" sing N N 105 S4C OP1 P sing N N 106 S4C OP1 H1P sing N N 107 S4C "C5'" "O5'" sing N N 108 S4C "C5'" "H5'" sing N N 109 S4C "C5'" "H5''" sing N N 110 S4C "O5'" P sing N N 111 S4C OP2 P sing N N 112 S4C OP2 H2P sing N N 113 S4C P OP3 doub N N 114 # _ndb_struct_conf_na.entry_id 2A0P _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 1 1_555 B G 8 1_555 0.384 -0.159 -0.236 10.692 -9.499 -0.714 1 A_C1:G16_B A 1 ? B 16 ? 19 1 1 A C 2 1_555 B G 7 1_555 0.081 -0.009 -0.255 12.000 -17.211 0.168 2 A_C2:G15_B A 2 ? B 15 ? 19 1 1 A S4C 3 1_555 B G 6 1_555 0.253 -0.111 -0.289 8.742 -10.875 -0.356 3 A_S4C3:G14_B A 3 ? B 14 ? 19 1 1 A C 4 1_555 B G 5 1_555 0.266 -0.329 -0.003 -0.225 -8.800 -2.412 4 A_C4:G13_B A 4 ? B 13 ? 19 1 1 A G 5 1_555 B C 4 1_555 -0.278 -0.201 -0.175 -3.819 -9.228 -1.357 5 A_G5:C12_B A 5 ? B 12 ? 19 1 1 A G 6 1_555 B S4C 3 1_555 -0.366 -0.238 0.013 -2.862 -9.858 0.222 6 A_G6:S4C11_B A 6 ? B 11 ? 19 1 1 A G 7 1_555 B C 2 1_555 -0.064 -0.347 -0.319 -12.421 -15.248 -2.709 7 A_G7:C10_B A 7 ? B 10 ? 19 1 1 A G 8 1_555 B C 1 1_555 0.064 -0.281 -0.218 -10.875 -11.068 -0.209 8 A_G8:C9_B A 8 ? B 9 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 1 1_555 B G 8 1_555 A C 2 1_555 B G 7 1_555 -0.253 -1.669 3.248 -2.846 7.630 28.856 -4.699 -0.059 2.738 14.940 5.573 29.960 1 AA_C1C2:G15G16_BB A 1 ? B 16 ? A 2 ? B 15 ? 1 A C 2 1_555 B G 7 1_555 A S4C 3 1_555 B G 6 1_555 -0.359 -1.858 3.442 -0.560 5.922 34.968 -3.927 0.506 3.101 9.768 0.924 35.455 2 AA_C2S4C3:G14G15_BB A 2 ? B 15 ? A 3 ? B 14 ? 1 A S4C 3 1_555 B G 6 1_555 A C 4 1_555 B G 5 1_555 0.263 -1.761 3.363 -2.177 10.435 32.236 -4.604 -0.782 2.658 18.183 3.793 33.909 3 AA_S4C3C4:G13G14_BB A 3 ? B 14 ? A 4 ? B 13 ? 1 A C 4 1_555 B G 5 1_555 A G 5 1_555 B C 4 1_555 -0.205 -2.122 3.328 -0.556 10.141 26.772 -6.373 0.301 2.384 20.968 1.150 28.601 4 AA_C4G5:C12G13_BB A 4 ? B 13 ? A 5 ? B 12 ? 1 A G 5 1_555 B C 4 1_555 A G 6 1_555 B S4C 3 1_555 0.103 -1.998 3.194 -0.674 6.115 28.170 -5.260 -0.344 2.705 12.376 1.365 28.821 5 AA_G5G6:S4C11C12_BB A 5 ? B 12 ? A 6 ? B 11 ? 1 A G 6 1_555 B S4C 3 1_555 A G 7 1_555 B C 2 1_555 0.244 -1.904 3.470 3.627 9.963 36.101 -4.243 0.089 2.873 15.666 -5.703 37.576 6 AA_G6G7:C10S4C11_BB A 6 ? B 11 ? A 7 ? B 10 ? 1 A G 7 1_555 B C 2 1_555 A G 8 1_555 B C 1 1_555 0.049 -1.736 3.244 1.933 8.326 31.754 -4.390 0.219 2.712 14.882 -3.455 32.856 7 AA_G7G8:C9C10_BB A 7 ? B 10 ? A 8 ? B 9 ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 259D _pdbx_initial_refinement_model.details ? #