HEADER OXIDOREDUCTASE 21-JUN-05 2A1Y TITLE CRYSTAL STRUCTURE OF GUAC-GMP COMPLEX FROM BACILLUS ANTHRACIS AT 2.26 TITLE 2 A RESOLUTION. COMPND MOL_ID: 1; COMPND 2 MOLECULE: GMP REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GUANOSINE 5'-MONOPHOSPHATE OXIDOREDUCTASE, GUANOSINE COMPND 5 MONOPHOSPHATE REDUCTASE; COMPND 6 EC: 1.7.1.7; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS ANTHRACIS; SOURCE 3 ORGANISM_TAXID: 1392; SOURCE 4 GENE: GUAC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA2; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-YSBLIC KEYWDS GUAC, GMP, PURINES, PYRIMIDINES, NUCLEOSIDES, AND NUCLEOTIDES: KEYWDS 2 NUCLEOTIDE AND NUCLEOSIDE INTERCONVERSIONS, SPINE, STRUCTURAL KEYWDS 3 GENOMICS, STRUCTURAL PROTEOMICS IN EUROPE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR R.GRENHA,V.M.LEVDIKOV,E.V.BLAGOVA,M.J.FOGG,J.A.BRANNIGAN, AUTHOR 2 A.J.WILKINSON,K.S.WILSON,STRUCTURAL PROTEOMICS IN EUROPE (SPINE) REVDAT 5 23-AUG-23 2A1Y 1 REMARK SEQADV REVDAT 4 18-JUL-18 2A1Y 1 REMARK REVDAT 3 13-JUL-11 2A1Y 1 VERSN REVDAT 2 24-FEB-09 2A1Y 1 VERSN REVDAT 1 04-JUL-06 2A1Y 0 JRNL AUTH R.GRENHA,V.M.LEVDIKOV,E.V.BLAGOVA,M.J.FOGG,J.A.BRANNIGAN, JRNL AUTH 2 A.J.WILKINSON,K.S.WILSON JRNL TITL CRYSTAL STRUCTURE OF GUAC-GMP COMPLEX FROM BACILLUS JRNL TITL 2 ANTHRACIS AT 2.26 A RESOLUTION. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.27 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.27 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.26 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 13179 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 696 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.27 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.33 REMARK 3 REFLECTION IN BIN (WORKING SET) : 689 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 70.62 REMARK 3 BIN R VALUE (WORKING SET) : 0.2210 REMARK 3 BIN FREE R VALUE SET COUNT : 37 REMARK 3 BIN FREE R VALUE : 0.4070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2332 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 174 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.18000 REMARK 3 B22 (A**2) : -0.18000 REMARK 3 B33 (A**2) : 0.37000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.361 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.252 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.176 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.167 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2422 ; 0.026 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3276 ; 2.254 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 303 ;11.201 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 105 ;31.758 ;24.667 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 424 ;20.889 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;14.766 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 368 ; 0.188 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1800 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1366 ; 0.266 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1634 ; 0.324 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 192 ; 0.200 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 76 ; 0.231 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 18 ; 0.294 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1546 ; 1.284 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2419 ; 2.181 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1012 ; 3.225 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 856 ; 4.713 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2A1Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JUN-05. REMARK 100 THE DEPOSITION ID IS D_1000033390. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-APR-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX9.6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.87000 REMARK 200 MONOCHROMATOR : SI MONOCHROMATOR REMARK 200 OPTICS : RH COATED SI MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13969 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.270 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.27 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.37700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1YPF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULPHATE, BIS-TRIS, REMARK 280 PENTAERYTHRITOL ETHOXYLATE, PH 6.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 47.80750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.80750 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 33.83700 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 47.80750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.80750 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 33.83700 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 47.80750 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 47.80750 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 33.83700 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 47.80750 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 47.80750 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 33.83700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 12480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 44090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -81.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -95.61500 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -95.61500 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 -95.61500 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 -95.61500 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -8 REMARK 465 SER A -7 REMARK 465 SER A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 LYS A 246 REMARK 465 ASP A 247 REMARK 465 GLY A 248 REMARK 465 ALA A 258 REMARK 465 SER A 259 REMARK 465 GLU A 260 REMARK 465 PHE A 261 REMARK 465 GLN A 262 REMARK 465 LYS A 263 REMARK 465 GLY A 264 REMARK 465 GLU A 265 REMARK 465 LYS A 266 REMARK 465 LYS A 267 REMARK 465 ASN A 268 REMARK 465 VAL A 269 REMARK 465 GLU A 270 REMARK 465 GLY A 271 REMARK 465 LYS A 272 REMARK 465 LYS A 273 REMARK 465 MET A 274 REMARK 465 ASN A 322 REMARK 465 GLY A 323 REMARK 465 ASP A 324 REMARK 465 LYS A 325 REMARK 465 VAL A 326 REMARK 465 TYR A 327 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 17 CB CYS A 17 SG -0.104 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 23 -25.45 -39.17 REMARK 500 PRO A 39 32.99 -72.92 REMARK 500 VAL A 94 25.34 -159.42 REMARK 500 TRP A 188 25.96 -152.81 REMARK 500 PRO A 240 151.53 -49.35 REMARK 500 ASN A 318 -85.18 -100.29 REMARK 500 ILE A 320 -41.53 -2.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE A 244 GLU A 245 -144.17 REMARK 500 LYS A 249 LEU A 250 -145.03 REMARK 500 PHE A 275 VAL A 276 128.18 REMARK 500 ASN A 318 SER A 319 145.46 REMARK 500 SER A 319 ILE A 320 118.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 5GP A 1344 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1YPF RELATED DB: PDB REMARK 900 APO FORM DBREF 2A1Y A 1 327 UNP Q81JJ9 GUAC_BACAN 1 327 SEQADV 2A1Y GLY A -8 UNP Q81JJ9 CLONING ARTIFACT SEQADV 2A1Y SER A -7 UNP Q81JJ9 CLONING ARTIFACT SEQADV 2A1Y SER A -6 UNP Q81JJ9 CLONING ARTIFACT SEQADV 2A1Y HIS A -5 UNP Q81JJ9 EXPRESSION TAG SEQADV 2A1Y HIS A -4 UNP Q81JJ9 EXPRESSION TAG SEQADV 2A1Y HIS A -3 UNP Q81JJ9 EXPRESSION TAG SEQADV 2A1Y HIS A -2 UNP Q81JJ9 EXPRESSION TAG SEQADV 2A1Y HIS A -1 UNP Q81JJ9 EXPRESSION TAG SEQADV 2A1Y HIS A 0 UNP Q81JJ9 EXPRESSION TAG SEQRES 1 A 336 GLY SER SER HIS HIS HIS HIS HIS HIS MET GLY ASN VAL SEQRES 2 A 336 PHE ASP TYR GLU ASP ILE GLN LEU ILE PRO ALA LYS CYS SEQRES 3 A 336 ILE VAL ASN SER ARG SER GLU CYS ASP THR THR VAL THR SEQRES 4 A 336 LEU GLY LYS HIS LYS PHE LYS LEU PRO VAL VAL PRO ALA SEQRES 5 A 336 ASN MET GLN THR ILE ILE ASP GLU ARG ILE ALA THR TYR SEQRES 6 A 336 LEU ALA GLU ASN ASN TYR PHE TYR ILE MET HIS ARG PHE SEQRES 7 A 336 GLN PRO GLU LYS ARG ILE SER PHE ILE ARG ASP MET GLN SEQRES 8 A 336 SER ARG GLY LEU ILE ALA SER ILE SER VAL GLY VAL LYS SEQRES 9 A 336 GLU ASP GLU TYR GLU PHE VAL GLN GLN LEU ALA ALA GLU SEQRES 10 A 336 HIS LEU THR PRO GLU TYR ILE THR ILE ASP ILE ALA HIS SEQRES 11 A 336 GLY HIS SER ASN ALA VAL ILE ASN MET ILE GLN HIS ILE SEQRES 12 A 336 LYS LYS HIS LEU PRO GLU SER PHE VAL ILE ALA GLY ASN SEQRES 13 A 336 VAL GLY THR PRO GLU ALA VAL ARG GLU LEU GLU ASN ALA SEQRES 14 A 336 GLY ALA ASP ALA THR LYS VAL GLY ILE GLY PRO GLY LYS SEQRES 15 A 336 VAL CYS ILE THR LYS ILE LYS THR GLY PHE GLY THR GLY SEQRES 16 A 336 GLY TRP GLN LEU ALA ALA LEU ARG TRP CYS ALA LYS ALA SEQRES 17 A 336 ALA SER LYS PRO ILE ILE ALA ASP GLY GLY ILE ARG THR SEQRES 18 A 336 ASN GLY ASP VAL ALA LYS SER ILE ARG PHE GLY ALA THR SEQRES 19 A 336 MET VAL MET ILE GLY SER LEU PHE ALA GLY HIS GLU GLU SEQRES 20 A 336 SER PRO GLY GLU THR ILE GLU LYS ASP GLY LYS LEU TYR SEQRES 21 A 336 LYS GLU TYR PHE GLY SER ALA SER GLU PHE GLN LYS GLY SEQRES 22 A 336 GLU LYS LYS ASN VAL GLU GLY LYS LYS MET PHE VAL GLU SEQRES 23 A 336 HIS LYS GLY SER LEU GLU ASP THR LEU ILE GLU MET GLU SEQRES 24 A 336 GLN ASP LEU GLN SER SER ILE SER TYR ALA GLY GLY THR SEQRES 25 A 336 LYS LEU ASP SER ILE ARG THR VAL ASP TYR VAL VAL VAL SEQRES 26 A 336 LYS ASN SER ILE PHE ASN GLY ASP LYS VAL TYR HET 5GP A1344 24 HETNAM 5GP GUANOSINE-5'-MONOPHOSPHATE FORMUL 2 5GP C10 H14 N5 O8 P FORMUL 3 HOH *174(H2 O) HELIX 1 1 ASP A 6 GLU A 8 5 3 HELIX 2 2 SER A 21 CYS A 25 5 5 HELIX 3 3 ASP A 50 ASN A 60 1 11 HELIX 4 4 GLN A 70 GLU A 72 5 3 HELIX 5 5 LYS A 73 ARG A 84 1 12 HELIX 6 6 GLU A 100 GLU A 108 1 9 HELIX 7 7 SER A 124 LEU A 138 1 15 HELIX 8 8 THR A 150 ALA A 160 1 11 HELIX 9 9 ILE A 176 GLY A 182 1 7 HELIX 10 10 TRP A 188 LYS A 198 1 11 HELIX 11 11 ASN A 213 PHE A 222 1 10 HELIX 12 12 GLY A 230 ALA A 234 5 5 HELIX 13 13 SER A 281 ALA A 300 1 20 HELIX 14 14 LYS A 304 VAL A 311 5 8 SHEET 1 A 2 ILE A 10 LEU A 12 0 SHEET 2 A 2 TYR A 313 VAL A 315 -1 O VAL A 314 N GLN A 11 SHEET 1 B 2 VAL A 29 LEU A 31 0 SHEET 2 B 2 HIS A 34 PHE A 36 -1 O PHE A 36 N VAL A 29 SHEET 1 C 7 VAL A 40 PRO A 42 0 SHEET 2 C 7 MET A 226 ILE A 229 1 O VAL A 227 N VAL A 41 SHEET 3 C 7 ILE A 204 ASP A 207 1 N ALA A 206 O MET A 228 SHEET 4 C 7 ALA A 164 VAL A 167 1 N VAL A 167 O ASP A 207 SHEET 5 C 7 PHE A 142 VAL A 148 1 N ALA A 145 O ALA A 164 SHEET 6 C 7 TYR A 114 ASP A 118 1 N ILE A 115 O ILE A 144 SHEET 7 C 7 SER A 89 VAL A 92 1 N VAL A 92 O THR A 116 SHEET 1 D 2 THR A 243 ILE A 244 0 SHEET 2 D 2 TYR A 251 LYS A 252 -1 O TYR A 251 N ILE A 244 CISPEP 1 MET A 1 GLY A 2 0 -5.88 CISPEP 2 LYS A 95 GLU A 96 0 -17.67 CISPEP 3 GLY A 146 ASN A 147 0 5.60 SITE 1 AC1 22 ALA A 43 MET A 45 GLY A 172 LYS A 173 SITE 2 AC1 22 CYS A 175 THR A 177 ASP A 207 GLY A 208 SITE 3 AC1 22 GLY A 209 ARG A 211 MET A 228 GLY A 230 SITE 4 AC1 22 SER A 231 TYR A 254 GLY A 256 SER A 257 SITE 5 AC1 22 HOH A1345 HOH A1366 HOH A1444 HOH A1447 SITE 6 AC1 22 HOH A1473 HOH A1480 CRYST1 95.615 95.615 67.674 90.00 90.00 90.00 I 4 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010459 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010459 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014777 0.00000