HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 23-JUN-05 2A33 TITLE X-RAY STRUCTURE OF A LYSINE DECARBOXYLASE-LIKE PROTEIN FROM TITLE 2 ARABIDOPSIS THALIANA GENE AT2G37210 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: AT2G37210; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: B834 P(RARE2); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PVP-13 KEYWDS STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, PSI, CENTER FOR KEYWDS 2 EUKARYOTIC STRUCTURAL GENOMICS, CESG, AT2G37210, LYSINE KEYWDS 3 DECARBOXYLASE-LIKE PROTEIN, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR G.E.WESENBERG,G.N.PHILLIPS JR.,J.G.MCCOY,E.BITTO,C.A.BINGMAN, AUTHOR 2 S.T.M.ALLARD,CENTER FOR EUKARYOTIC STRUCTURAL GENOMICS (CESG) REVDAT 6 15-NOV-23 2A33 1 REMARK REVDAT 5 23-AUG-23 2A33 1 REMARK SEQADV LINK REVDAT 4 11-OCT-17 2A33 1 REMARK REVDAT 3 24-FEB-09 2A33 1 VERSN REVDAT 2 05-DEC-06 2A33 1 JRNL REVDAT 1 19-JUL-05 2A33 0 JRNL AUTH W.B.JEON,S.T.M.ALLARD,C.A.BINGMAN,E.BITTO,B.W.HAN, JRNL AUTH 2 G.E.WESENBERG,G.N.PHILLIPS JR. JRNL TITL X-RAY CRYSTAL STRUCTURES OF THE CONSERVED HYPOTHETICAL JRNL TITL 2 PROTEINS FROM ARABIDOPSIS THALIANA GENE LOCI AT5G11950 AND JRNL TITL 3 AT2G37210. JRNL REF PROTEINS V. 65 1051 2006 JRNL REFN ISSN 0887-3585 JRNL PMID 17048257 JRNL DOI 10.1002/PROT.21166 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REFMAC_5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 25025 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1336 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1777 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.45 REMARK 3 BIN R VALUE (WORKING SET) : 0.2150 REMARK 3 BIN FREE R VALUE SET COUNT : 96 REMARK 3 BIN FREE R VALUE : 0.3090 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2636 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 11 REMARK 3 SOLVENT ATOMS : 222 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.34000 REMARK 3 B22 (A**2) : -0.31000 REMARK 3 B33 (A**2) : 0.65000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.165 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.157 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.108 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.676 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2686 ; 0.021 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3618 ; 1.712 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 344 ; 6.324 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 108 ;34.466 ;24.444 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 482 ;15.764 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;19.020 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 410 ; 0.135 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1972 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1299 ; 0.212 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1829 ; 0.304 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 193 ; 0.175 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.026 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 39 ; 0.271 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 20 ; 0.126 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1781 ; 1.861 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2729 ; 2.946 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1034 ; 5.342 ; 6.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 889 ; 7.146 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2A33 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JUN-05. REMARK 100 THE DEPOSITION ID IS D_1000033429. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUN-05 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : WATER COOLED SI (111) DOUBLE REMARK 200 BOUNCE REMARK 200 OPTICS : HORIZONTAL SAGITALLY FOCUSING REMARK 200 2ND BENT MONOCHROMATOR CRYSTAL, REMARK 200 VERTICAL BENT FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26424 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 10.70 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.0090 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.51800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.756 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1YDH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MG/ML PROTEIN, 22% PEG 2K, 0.084 M REMARK 280 MAGNESIUM SULFATE, 0.100 M BISTRIS, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 296K, PH 6.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.70150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.31950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.38650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.31950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.70150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.38650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -74.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 GLU A 2 REMARK 465 ILE A 3 REMARK 465 LYS A 4 REMARK 465 GLY A 5 REMARK 465 GLU A 6 REMARK 465 SER A 7 REMARK 465 PRO A 82 REMARK 465 ARG A 83 REMARK 465 GLU A 84 REMARK 465 LEU A 85 REMARK 465 THR A 86 REMARK 465 GLY A 87 REMARK 465 GLU A 88 REMARK 465 THR A 89 REMARK 465 TYR A 191 REMARK 465 ALA A 192 REMARK 465 PRO A 193 REMARK 465 CYS A 194 REMARK 465 HIS A 195 REMARK 465 GLU A 196 REMARK 465 ARG A 197 REMARK 465 VAL A 198 REMARK 465 ALA A 199 REMARK 465 THR A 200 REMARK 465 LYS A 201 REMARK 465 LEU A 202 REMARK 465 CYS A 203 REMARK 465 TRP A 204 REMARK 465 GLU A 205 REMARK 465 MSE A 206 REMARK 465 GLU A 207 REMARK 465 ARG A 208 REMARK 465 ILE A 209 REMARK 465 GLY A 210 REMARK 465 TYR A 211 REMARK 465 SER A 212 REMARK 465 SER A 213 REMARK 465 GLU A 214 REMARK 465 GLU A 215 REMARK 465 MSE B 1 REMARK 465 GLU B 2 REMARK 465 ILE B 3 REMARK 465 LYS B 4 REMARK 465 GLY B 5 REMARK 465 GLU B 6 REMARK 465 SER B 7 REMARK 465 MSE B 8 REMARK 465 GLN B 9 REMARK 465 THR B 79 REMARK 465 LEU B 80 REMARK 465 MSE B 81 REMARK 465 PRO B 82 REMARK 465 ARG B 83 REMARK 465 GLU B 84 REMARK 465 LEU B 85 REMARK 465 THR B 86 REMARK 465 TYR B 191 REMARK 465 ALA B 192 REMARK 465 PRO B 193 REMARK 465 CYS B 194 REMARK 465 HIS B 195 REMARK 465 GLU B 196 REMARK 465 ARG B 197 REMARK 465 VAL B 198 REMARK 465 ALA B 199 REMARK 465 THR B 200 REMARK 465 LYS B 201 REMARK 465 LEU B 202 REMARK 465 CYS B 203 REMARK 465 TRP B 204 REMARK 465 GLU B 205 REMARK 465 MSE B 206 REMARK 465 GLU B 207 REMARK 465 ARG B 208 REMARK 465 ILE B 209 REMARK 465 GLY B 210 REMARK 465 TYR B 211 REMARK 465 SER B 212 REMARK 465 SER B 213 REMARK 465 GLU B 214 REMARK 465 GLU B 215 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MSE B 99 CB - CG - SE ANGL. DEV. = -18.3 DEGREES REMARK 500 LEU B 127 CA - CB - CG ANGL. DEV. = -20.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 53 SER A 54 146.64 REMARK 500 GLU B 189 GLU B 190 139.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 700 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 139 O REMARK 620 2 ASP B 139 OD2 92.0 REMARK 620 3 HOH B 764 O 81.9 96.8 REMARK 620 4 HOH B 816 O 93.6 90.2 171.8 REMARK 620 5 HOH B 817 O 171.9 80.1 97.6 87.9 REMARK 620 6 HOH B 818 O 103.2 162.7 77.5 97.1 84.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 700 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1YDH RELATED DB: PDB REMARK 900 60 PERCENT SEQUENCE IDENTITY, SAME FOLD REMARK 900 RELATED ID: GO.9733 RELATED DB: TARGETDB DBREF 2A33 A 1 215 GB 21805708 AAM76759 1 215 DBREF 2A33 B 1 215 GB 21805708 AAM76759 1 215 SEQADV 2A33 MSE A 1 GB 21805708 MET 1 MODIFIED RESIDUE SEQADV 2A33 MSE A 8 GB 21805708 MET 8 MODIFIED RESIDUE SEQADV 2A33 MSE A 58 GB 21805708 MET 58 MODIFIED RESIDUE SEQADV 2A33 MSE A 81 GB 21805708 MET 81 MODIFIED RESIDUE SEQADV 2A33 MSE A 99 GB 21805708 MET 99 MODIFIED RESIDUE SEQADV 2A33 MSE A 106 GB 21805708 MET 106 MODIFIED RESIDUE SEQADV 2A33 MSE A 206 GB 21805708 MET 206 MODIFIED RESIDUE SEQADV 2A33 MSE B 1 GB 21805708 MET 1 MODIFIED RESIDUE SEQADV 2A33 MSE B 8 GB 21805708 MET 8 MODIFIED RESIDUE SEQADV 2A33 MSE B 58 GB 21805708 MET 58 MODIFIED RESIDUE SEQADV 2A33 MSE B 81 GB 21805708 MET 81 MODIFIED RESIDUE SEQADV 2A33 MSE B 99 GB 21805708 MET 99 MODIFIED RESIDUE SEQADV 2A33 MSE B 106 GB 21805708 MET 106 MODIFIED RESIDUE SEQADV 2A33 MSE B 206 GB 21805708 MET 206 MODIFIED RESIDUE SEQRES 1 A 215 MSE GLU ILE LYS GLY GLU SER MSE GLN LYS SER LYS PHE SEQRES 2 A 215 ARG ARG ILE CYS VAL PHE CYS GLY SER SER GLN GLY LYS SEQRES 3 A 215 LYS SER SER TYR GLN ASP ALA ALA VAL ASP LEU GLY ASN SEQRES 4 A 215 GLU LEU VAL SER ARG ASN ILE ASP LEU VAL TYR GLY GLY SEQRES 5 A 215 GLY SER ILE GLY LEU MSE GLY LEU VAL SER GLN ALA VAL SEQRES 6 A 215 HIS ASP GLY GLY ARG HIS VAL ILE GLY ILE ILE PRO LYS SEQRES 7 A 215 THR LEU MSE PRO ARG GLU LEU THR GLY GLU THR VAL GLY SEQRES 8 A 215 GLU VAL ARG ALA VAL ALA ASP MSE HIS GLN ARG LYS ALA SEQRES 9 A 215 GLU MSE ALA LYS HIS SER ASP ALA PHE ILE ALA LEU PRO SEQRES 10 A 215 GLY GLY TYR GLY THR LEU GLU GLU LEU LEU GLU VAL ILE SEQRES 11 A 215 THR TRP ALA GLN LEU GLY ILE HIS ASP LYS PRO VAL GLY SEQRES 12 A 215 LEU LEU ASN VAL ASP GLY TYR TYR ASN SER LEU LEU SER SEQRES 13 A 215 PHE ILE ASP LYS ALA VAL GLU GLU GLY PHE ILE SER PRO SEQRES 14 A 215 THR ALA ARG GLU ILE ILE VAL SER ALA PRO THR ALA LYS SEQRES 15 A 215 GLU LEU VAL LYS LYS LEU GLU GLU TYR ALA PRO CYS HIS SEQRES 16 A 215 GLU ARG VAL ALA THR LYS LEU CYS TRP GLU MSE GLU ARG SEQRES 17 A 215 ILE GLY TYR SER SER GLU GLU SEQRES 1 B 215 MSE GLU ILE LYS GLY GLU SER MSE GLN LYS SER LYS PHE SEQRES 2 B 215 ARG ARG ILE CYS VAL PHE CYS GLY SER SER GLN GLY LYS SEQRES 3 B 215 LYS SER SER TYR GLN ASP ALA ALA VAL ASP LEU GLY ASN SEQRES 4 B 215 GLU LEU VAL SER ARG ASN ILE ASP LEU VAL TYR GLY GLY SEQRES 5 B 215 GLY SER ILE GLY LEU MSE GLY LEU VAL SER GLN ALA VAL SEQRES 6 B 215 HIS ASP GLY GLY ARG HIS VAL ILE GLY ILE ILE PRO LYS SEQRES 7 B 215 THR LEU MSE PRO ARG GLU LEU THR GLY GLU THR VAL GLY SEQRES 8 B 215 GLU VAL ARG ALA VAL ALA ASP MSE HIS GLN ARG LYS ALA SEQRES 9 B 215 GLU MSE ALA LYS HIS SER ASP ALA PHE ILE ALA LEU PRO SEQRES 10 B 215 GLY GLY TYR GLY THR LEU GLU GLU LEU LEU GLU VAL ILE SEQRES 11 B 215 THR TRP ALA GLN LEU GLY ILE HIS ASP LYS PRO VAL GLY SEQRES 12 B 215 LEU LEU ASN VAL ASP GLY TYR TYR ASN SER LEU LEU SER SEQRES 13 B 215 PHE ILE ASP LYS ALA VAL GLU GLU GLY PHE ILE SER PRO SEQRES 14 B 215 THR ALA ARG GLU ILE ILE VAL SER ALA PRO THR ALA LYS SEQRES 15 B 215 GLU LEU VAL LYS LYS LEU GLU GLU TYR ALA PRO CYS HIS SEQRES 16 B 215 GLU ARG VAL ALA THR LYS LEU CYS TRP GLU MSE GLU ARG SEQRES 17 B 215 ILE GLY TYR SER SER GLU GLU MODRES 2A33 MSE A 8 MET SELENOMETHIONINE MODRES 2A33 MSE A 58 MET SELENOMETHIONINE MODRES 2A33 MSE A 81 MET SELENOMETHIONINE MODRES 2A33 MSE A 99 MET SELENOMETHIONINE MODRES 2A33 MSE A 106 MET SELENOMETHIONINE MODRES 2A33 MSE B 58 MET SELENOMETHIONINE MODRES 2A33 MSE B 99 MET SELENOMETHIONINE MODRES 2A33 MSE B 106 MET SELENOMETHIONINE HET MSE A 8 8 HET MSE A 58 8 HET MSE A 81 8 HET MSE A 99 8 HET MSE A 106 8 HET MSE B 58 8 HET MSE B 99 8 HET MSE B 106 8 HET SO4 A 600 5 HET SO4 B 500 5 HET MG B 700 1 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM MG MAGNESIUM ION FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 MG MG 2+ FORMUL 6 HOH *222(H2 O) HELIX 1 1 LYS A 27 ARG A 44 1 18 HELIX 2 2 ILE A 55 GLY A 68 1 14 HELIX 3 3 ASP A 98 HIS A 109 1 12 HELIX 4 4 GLY A 119 LEU A 135 1 17 HELIX 5 5 VAL A 147 TYR A 150 5 4 HELIX 6 6 TYR A 151 GLU A 164 1 14 HELIX 7 7 SER A 168 GLU A 173 1 6 HELIX 8 8 THR A 180 GLU A 190 1 11 HELIX 9 9 LYS B 27 ARG B 44 1 18 HELIX 10 10 ILE B 55 GLY B 68 1 14 HELIX 11 11 ASP B 98 HIS B 109 1 12 HELIX 12 12 GLY B 119 LEU B 135 1 17 HELIX 13 13 VAL B 147 TYR B 150 5 4 HELIX 14 14 TYR B 151 GLU B 164 1 14 HELIX 15 15 SER B 168 GLU B 173 1 6 HELIX 16 16 THR B 180 GLU B 190 1 11 SHEET 1 A 7 GLU A 92 VAL A 96 0 SHEET 2 A 7 VAL A 72 PRO A 77 1 N GLY A 74 O ARG A 94 SHEET 3 A 7 ASP A 47 TYR A 50 1 N LEU A 48 O ILE A 73 SHEET 4 A 7 ARG A 15 PHE A 19 1 N ILE A 16 O VAL A 49 SHEET 5 A 7 ALA A 112 ALA A 115 1 O ALA A 112 N CYS A 17 SHEET 6 A 7 VAL A 142 LEU A 145 1 O LEU A 145 N ALA A 115 SHEET 7 A 7 ILE A 175 ALA A 178 1 O VAL A 176 N LEU A 144 SHEET 1 B 7 GLU B 92 VAL B 96 0 SHEET 2 B 7 VAL B 72 PRO B 77 1 N GLY B 74 O ARG B 94 SHEET 3 B 7 ASP B 47 TYR B 50 1 N LEU B 48 O ILE B 73 SHEET 4 B 7 ARG B 15 PHE B 19 1 N ILE B 16 O VAL B 49 SHEET 5 B 7 ALA B 112 ALA B 115 1 O ILE B 114 N PHE B 19 SHEET 6 B 7 VAL B 142 LEU B 145 1 O GLY B 143 N ALA B 115 SHEET 7 B 7 ILE B 175 ALA B 178 1 O VAL B 176 N LEU B 144 LINK C MSE A 8 N GLN A 9 1555 1555 1.33 LINK C LEU A 57 N MSE A 58 1555 1555 1.34 LINK C MSE A 58 N GLY A 59 1555 1555 1.34 LINK C LEU A 80 N MSE A 81 1555 1555 1.34 LINK C ASP A 98 N MSE A 99 1555 1555 1.33 LINK C MSE A 99 N HIS A 100 1555 1555 1.33 LINK C GLU A 105 N MSE A 106 1555 1555 1.34 LINK C MSE A 106 N ALA A 107 1555 1555 1.34 LINK C LEU B 57 N MSE B 58 1555 1555 1.34 LINK C MSE B 58 N GLY B 59 1555 1555 1.33 LINK C ASP B 98 N MSE B 99 1555 1555 1.33 LINK C MSE B 99 N HIS B 100 1555 1555 1.34 LINK C GLU B 105 N MSE B 106 1555 1555 1.34 LINK C MSE B 106 N ALA B 107 1555 1555 1.34 LINK O ASP B 139 MG MG B 700 1555 1555 1.97 LINK OD2 ASP B 139 MG MG B 700 1555 1555 2.15 LINK MG MG B 700 O HOH B 764 1555 1555 2.45 LINK MG MG B 700 O HOH B 816 1555 1555 2.14 LINK MG MG B 700 O HOH B 817 1555 1555 2.51 LINK MG MG B 700 O HOH B 818 1555 1555 2.11 SITE 1 AC1 10 HOH A 700 SER B 22 GLY B 118 GLY B 119 SITE 2 AC1 10 TYR B 120 GLY B 121 THR B 122 HOH B 719 SITE 3 AC1 10 HOH B 737 HOH B 751 SITE 1 AC2 9 SER A 22 GLY A 119 TYR A 120 GLY A 121 SITE 2 AC2 9 THR A 122 HOH A 606 HOH A 617 HOH A 635 SITE 3 AC2 9 HOH B 785 SITE 1 AC3 5 ASP B 139 HOH B 764 HOH B 816 HOH B 817 SITE 2 AC3 5 HOH B 818 CRYST1 53.403 66.773 98.639 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018726 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014976 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010138 0.00000 HETATM 1 N MSE A 8 25.193 -13.109 24.230 1.00 51.27 N HETATM 2 CA MSE A 8 26.122 -12.848 25.394 1.00 51.66 C HETATM 3 C MSE A 8 25.970 -11.482 26.066 1.00 52.14 C HETATM 4 O MSE A 8 26.195 -11.355 27.270 1.00 52.77 O HETATM 5 CB MSE A 8 27.605 -13.049 24.997 1.00 51.84 C HETATM 6 CG MSE A 8 28.064 -14.509 24.869 1.00 48.31 C HETATM 7 SE MSE A 8 27.824 -15.561 26.522 1.00 32.41 SE HETATM 8 CE MSE A 8 28.426 -14.166 27.610 1.00 52.64 C