HEADER CELL ADHESION 28-JUN-05 2A4E TITLE CRYSTAL STRUCTURE OF MOUSE CADHERIN-11 EC1-2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CADHERIN-11; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: OSTEOBLAST-CADHERIN, OB-CADHERIN, OSF-4; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: CDH11, CAD-11; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PSMT3 KEYWDS CADHERIN, DIMER, CALCIUM BINDING, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR S.D.PATEL,C.CIATTO,C.P.CHEN,F.BAHNA,N.ARKUS,M.RAJEBHOSALE, AUTHOR 2 T.M.JESSELL,B.HONIG,S.R.PRICE,L.SHAPIRO REVDAT 4 23-AUG-23 2A4E 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 2A4E 1 VERSN REVDAT 2 24-FEB-09 2A4E 1 VERSN REVDAT 1 25-APR-06 2A4E 0 JRNL AUTH S.D.PATEL,C.CIATTO,C.P.CHEN,F.BAHNA,M.RAJEBHOSALE,N.ARKUS, JRNL AUTH 2 I.SCHIEREN,T.M.JESSELL,B.HONIG,S.R.PRICE,L.SHAPIRO JRNL TITL TYPE II CADHERIN ECTODOMAIN STRUCTURES: IMPLICATIONS FOR JRNL TITL 2 CLASSICAL CADHERIN SPECIFICITY. JRNL REF CELL(CAMBRIDGE,MASS.) V. 124 1255 2006 JRNL REFN ISSN 0092-8674 JRNL PMID 16564015 JRNL DOI 10.1016/J.CELL.2005.12.046 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 8536 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 433 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 582 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.66 REMARK 3 BIN R VALUE (WORKING SET) : 0.2980 REMARK 3 BIN FREE R VALUE SET COUNT : 38 REMARK 3 BIN FREE R VALUE : 0.4860 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1612 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 15 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 74.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.64000 REMARK 3 B22 (A**2) : 0.64000 REMARK 3 B33 (A**2) : -0.96000 REMARK 3 B12 (A**2) : 0.32000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.621 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.352 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.267 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 31.513 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.926 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.907 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1647 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2243 ; 1.764 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 207 ; 7.332 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 80 ;37.984 ;25.250 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 265 ;23.830 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;18.619 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 251 ; 0.114 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1278 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 777 ; 0.257 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1127 ; 0.328 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 65 ; 0.232 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 10 ; 0.201 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 62 ; 0.230 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.208 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1041 ; 0.626 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1678 ; 1.131 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 659 ; 1.542 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 565 ; 2.683 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 97 REMARK 3 ORIGIN FOR THE GROUP (A): 150.8560 106.3120 44.7610 REMARK 3 T TENSOR REMARK 3 T11: -0.2544 T22: -0.0722 REMARK 3 T33: -0.0339 T12: -0.1732 REMARK 3 T13: -0.0612 T23: -0.1005 REMARK 3 L TENSOR REMARK 3 L11: 5.1873 L22: 4.6112 REMARK 3 L33: 2.9963 L12: -0.9071 REMARK 3 L13: -1.2297 L23: -1.4480 REMARK 3 S TENSOR REMARK 3 S11: -0.3199 S12: 0.7054 S13: 0.1109 REMARK 3 S21: -0.1625 S22: -0.0504 S23: -0.6908 REMARK 3 S31: -0.1747 S32: 0.0172 S33: 0.3702 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 100 A 207 REMARK 3 ORIGIN FOR THE GROUP (A): 106.1190 107.0530 33.5270 REMARK 3 T TENSOR REMARK 3 T11: -0.2295 T22: 0.1123 REMARK 3 T33: -0.4663 T12: 0.0299 REMARK 3 T13: -0.1129 T23: -0.0995 REMARK 3 L TENSOR REMARK 3 L11: 13.5927 L22: 3.5414 REMARK 3 L33: 7.5510 L12: 2.0674 REMARK 3 L13: 5.6812 L23: 0.2555 REMARK 3 S TENSOR REMARK 3 S11: 0.3652 S12: 0.0034 S13: 0.1056 REMARK 3 S21: -0.1306 S22: -0.1521 S23: 0.0430 REMARK 3 S31: 0.3801 S32: 0.0273 S33: -0.2131 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2A4E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUL-05. REMARK 100 THE DEPOSITION ID IS D_1000033473. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8610 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1ZVN AND 1ZXK FOR THE EC1 DOMAIN, AND REMARK 200 THE EC2 DOMAINS OF PDB ENTRIES 1NCJ, 1EDH, AND 1L3W, FOR THE EC2 REMARK 200 DOMAIN. REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 77.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, HEPES, SUCROSE, REMARK 280 CALCIUM CHLORIDE, PH 7.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 28.54067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 14.27033 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 28.54067 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 14.27033 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 28.54067 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 14.27033 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 28.54067 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 14.27033 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 304.87350 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 176.01880 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 99.89233 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 208 REMARK 465 TYR A 209 REMARK 465 LYS A 210 REMARK 465 ASP A 211 REMARK 465 ASP A 212 REMARK 465 ASP A 213 REMARK 465 LYS A 214 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 304 O HOH A 317 11657 1.82 REMARK 500 O HOH A 306 O HOH A 315 9767 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 29 95.76 -54.22 REMARK 500 THR A 46 -68.67 -102.35 REMARK 500 ASP A 81 -71.32 -74.68 REMARK 500 ILE A 110 106.64 -162.48 REMARK 500 GLU A 117 -72.72 -30.68 REMARK 500 SER A 119 147.21 -37.62 REMARK 500 THR A 137 -75.87 -55.91 REMARK 500 ASN A 140 12.60 169.92 REMARK 500 ALA A 167 41.41 -141.28 REMARK 500 ASN A 170 71.83 13.61 REMARK 500 GLU A 174 -63.15 -27.01 REMARK 500 ALA A 175 -93.93 -16.22 REMARK 500 MET A 188 44.90 77.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 11 OE1 REMARK 620 2 GLU A 11 OE2 41.8 REMARK 620 3 GLU A 66 OE1 117.0 92.4 REMARK 620 4 GLU A 66 OE2 99.2 59.3 44.3 REMARK 620 5 ASP A 98 OD1 83.7 115.0 83.5 122.9 REMARK 620 6 ILE A 99 O 82.5 114.9 151.6 158.9 78.2 REMARK 620 7 ASP A 101 OD2 102.9 83.6 113.2 80.0 155.3 79.1 REMARK 620 8 ASP A 134 OD1 153.8 153.9 87.6 105.2 90.9 71.3 72.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 11 OE2 REMARK 620 2 GLU A 12 OE2 111.5 REMARK 620 3 ASP A 64 OD2 101.5 89.4 REMARK 620 4 GLU A 66 OE2 69.9 176.9 93.0 REMARK 620 5 ASP A 101 OD1 101.6 72.8 154.7 104.4 REMARK 620 6 ASP A 101 OD2 79.2 113.1 155.8 64.3 41.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 100 OD1 REMARK 620 2 ASN A 102 O 80.8 REMARK 620 3 ASP A 132 OD1 143.9 131.5 REMARK 620 4 ASP A 132 OD2 167.9 87.4 46.4 REMARK 620 5 ASP A 134 OD2 77.8 79.4 91.6 97.6 REMARK 620 6 SER A 141 O 91.4 171.1 57.2 100.5 103.3 REMARK 620 7 ASP A 187 OD1 101.6 105.2 86.2 84.0 175.3 72.0 REMARK 620 8 ASP A 187 OD2 58.6 80.1 131.9 122.0 134.1 92.2 46.9 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ZVN RELATED DB: PDB REMARK 900 RELATED ID: 1ZXK RELATED DB: PDB REMARK 900 RELATED ID: 2A4C RELATED DB: PDB DBREF 2A4E A 2 208 UNP P55288 CAD11_MOUSE 54 260 SEQADV 2A4E SER A 0 UNP P55288 CLONING ARTIFACT SEQRES 1 A 215 SER GLY TRP VAL TRP ASN GLN PHE PHE VAL ILE GLU GLU SEQRES 2 A 215 TYR THR GLY PRO ASP PRO VAL LEU VAL GLY ARG LEU HIS SEQRES 3 A 215 SER ASP ILE ASP SER GLY ASP GLY ASN ILE LYS TYR ILE SEQRES 4 A 215 LEU SER GLY GLU GLY ALA GLY THR ILE PHE VAL ILE ASP SEQRES 5 A 215 ASP LYS SER GLY ASN ILE HIS ALA THR LYS THR LEU ASP SEQRES 6 A 215 ARG GLU GLU ARG ALA GLN TYR THR LEU MET ALA GLN ALA SEQRES 7 A 215 VAL ASP ARG ASP THR ASN ARG PRO LEU GLU PRO PRO SER SEQRES 8 A 215 GLU PHE ILE VAL LYS VAL GLN ASP ILE ASN ASP ASN PRO SEQRES 9 A 215 PRO GLU PHE LEU HIS GLU ILE TYR HIS ALA ASN VAL PRO SEQRES 10 A 215 GLU ARG SER ASN VAL GLY THR SER VAL ILE GLN VAL THR SEQRES 11 A 215 ALA SER ASP ALA ASP ASP PRO THR TYR GLY ASN SER ALA SEQRES 12 A 215 LYS LEU VAL TYR SER ILE LEU GLU GLY GLN PRO TYR PHE SEQRES 13 A 215 SER VAL GLU ALA GLN THR GLY ILE ILE ARG THR ALA LEU SEQRES 14 A 215 PRO ASN MET ASP ARG GLU ALA LYS GLU GLU TYR HIS VAL SEQRES 15 A 215 VAL ILE GLN ALA LYS ASP MET GLY GLY HIS MET GLY GLY SEQRES 16 A 215 LEU SER GLY THR THR LYS VAL THR ILE THR LEU THR ASP SEQRES 17 A 215 ASP TYR LYS ASP ASP ASP LYS HET CA A 301 1 HET CA A 302 1 HET CA A 303 1 HETNAM CA CALCIUM ION FORMUL 2 CA 3(CA 2+) FORMUL 5 HOH *15(H2 O) SHEET 1 A 4 GLN A 6 ILE A 10 0 SHEET 2 A 4 PRO A 85 GLN A 97 1 O LYS A 95 N PHE A 7 SHEET 3 A 4 GLN A 70 ASP A 79 -1 N ALA A 77 O LEU A 86 SHEET 4 A 4 ILE A 35 GLY A 41 -1 N LYS A 36 O VAL A 78 SHEET 1 B 3 VAL A 19 ARG A 23 0 SHEET 2 B 3 ASN A 56 ALA A 59 -1 O ILE A 57 N GLY A 22 SHEET 3 B 3 PHE A 48 ILE A 50 -1 N VAL A 49 O HIS A 58 SHEET 1 C 2 GLU A 105 PHE A 106 0 SHEET 2 C 2 ALA A 130 SER A 131 -1 O SER A 131 N GLU A 105 SHEET 1 D 4 TYR A 111 PRO A 116 0 SHEET 2 D 4 SER A 196 THR A 206 1 O LYS A 200 N TYR A 111 SHEET 3 D 4 GLU A 178 LYS A 186 -1 N VAL A 181 O VAL A 201 SHEET 4 D 4 VAL A 145 GLU A 150 -1 N LEU A 149 O VAL A 182 SHEET 1 E 3 SER A 124 GLN A 127 0 SHEET 2 E 3 ILE A 163 THR A 166 -1 O ILE A 164 N VAL A 125 SHEET 3 E 3 PHE A 155 VAL A 157 -1 N SER A 156 O ARG A 165 LINK OE1 GLU A 11 CA CA A 302 1555 1555 3.18 LINK OE2 GLU A 11 CA CA A 302 1555 1555 2.93 LINK OE2 GLU A 11 CA CA A 303 1555 1555 2.17 LINK OE2 GLU A 12 CA CA A 303 1555 1555 2.49 LINK OD2 ASP A 64 CA CA A 303 1555 1555 2.02 LINK OE1 GLU A 66 CA CA A 302 1555 1555 3.10 LINK OE2 GLU A 66 CA CA A 302 1555 1555 2.50 LINK OE2 GLU A 66 CA CA A 303 1555 1555 2.53 LINK OD1 ASP A 98 CA CA A 302 1555 1555 2.23 LINK O ILE A 99 CA CA A 302 1555 1555 2.36 LINK OD1 ASN A 100 CA CA A 301 1555 1555 2.68 LINK OD2 ASP A 101 CA CA A 302 1555 1555 2.41 LINK OD1 ASP A 101 CA CA A 303 1555 1555 2.19 LINK OD2 ASP A 101 CA CA A 303 1555 1555 3.28 LINK O ASN A 102 CA CA A 301 1555 1555 2.26 LINK OD1 ASP A 132 CA CA A 301 1555 1555 3.00 LINK OD2 ASP A 132 CA CA A 301 1555 1555 2.28 LINK OD2 ASP A 134 CA CA A 301 1555 1555 2.30 LINK OD1 ASP A 134 CA CA A 302 1555 1555 2.52 LINK O SER A 141 CA CA A 301 1555 1555 2.25 LINK OD1 ASP A 187 CA CA A 301 1555 1555 2.78 LINK OD2 ASP A 187 CA CA A 301 1555 1555 2.81 CISPEP 1 GLN A 152 PRO A 153 0 14.38 SITE 1 AC1 6 ASN A 100 ASN A 102 ASP A 132 ASP A 134 SITE 2 AC1 6 SER A 141 ASP A 187 SITE 1 AC2 7 GLU A 11 ARG A 65 GLU A 66 ASP A 98 SITE 2 AC2 7 ILE A 99 ASP A 101 ASP A 134 SITE 1 AC3 5 GLU A 11 GLU A 12 ASP A 64 GLU A 66 SITE 2 AC3 5 ASP A 101 CRYST1 203.249 203.249 42.811 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004920 0.002841 0.000000 0.00000 SCALE2 0.000000 0.005681 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023358 0.00000