HEADER SIGNALING PROTEIN,TRANSFERASE/INHIBITOR 30-JUN-05 2A4Y OBSLTE 30-JAN-07 2A4Y 2OJ2 TITLE NMR STRUCTURE ANALYSIS OF THE HEMATOPOETIC CELL KINASE SH3 TITLE 2 DOMAIN COMPLEXED WITH AN ARTIFICIAL HIGH AFFINITY LIGAND TITLE 3 (PD1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMATOPOETIC CELL KINASE, SH3 DOMAIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SH3; COMPND 5 SYNONYM: TYROSINE-PROTEIN KINASE HCK; P59-HCK/P60-HCK; COMPND 6 EC: 2.7.1.112; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: ARTIFICIAL PEPTIDE PD1; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 GENE: HCK; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_COMMON: BACTERIA; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX6P2; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 OTHER_DETAILS: THE PEPTIDE WAS IDENTIFIED AS HIGH AFFINITY SOURCE 13 LIGAND OF HCK-SH3 FROM SCREENING A PHAGE DISPLAYED PEPTIDE SOURCE 14 LIBARY, ACETYLATED AND AMIDATED KEYWDS HUMAN HCK; SH3; SRC-TYPE TYROSINE KINASE; NMR EXPDTA NMR, 20 STRUCTURES AUTHOR H.SCHMIDT,M.STOLDT,T.TRAN,S.HOFFMANN,D.WILLBOLD REVDAT 2 30-JAN-07 2A4Y 1 OBSLTE REVDAT 1 22-AUG-06 2A4Y 0 JRNL AUTH H.SCHMIDT,M.STOLDT,T.TRAN,S.HOFFMANN,D.WILLBOLD JRNL TITL SOLUTION STRUCTURE OF A HCK SH3 DOMAIN LIGAND JRNL TITL 2 COMPLEX REVEALS NOVEL INTERACTION MODES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : RADAR 0.9B REMARK 3 AUTHORS : HERRMANN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL REMARK 3 OF 2500 NOE-DERIVED DISTANCE CONSTRAINTS REMARK 4 REMARK 4 2A4Y COMPLIES WITH FORMAT V. 3.0, 1-DEC-2006 REMARK 4 REMARK 4 THIS FILE IS A TEST VERSION. REMARK 4 REMARK 4 THIS IS THE REMEDIATED VERSION OF THIS PDB ENTRY. REMARK 4 REMEDIATED DATA FILE REVISION 3.100 (2007-05-01) REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PRAGUE ON 12-JUL-2005. REMARK 100 THE RCSB ID CODE IS RCSB033493. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.7 REMARK 210 IONIC STRENGTH : 20MM KPO4, 20MM NACL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1.3MM HCK-SH3 U-13C, U-15N: REMARK 210 1.3MM PD1, 20MM KPO4, 20MM REMARK 210 NACL, PH=6.7 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY, 3D_13C/ REMARK 210 15N-FILTERED/EDITED NOESY, 2D_ REMARK 210 13C/15N-DOUBLE FILTERED NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ, 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2.3, CARA/NEASY REMARK 210 1.3.1, VNMRJ 1.1D, CYANA 1.1 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU B 125 154.35 59.02 REMARK 500 2 LYS B 122 -80.60 72.35 REMARK 500 2 LEU B 125 153.86 60.26 REMARK 500 3 LYS B 122 -69.20 69.14 REMARK 500 3 LEU B 125 153.90 59.27 REMARK 500 4 GLU A 85 121.39 63.79 REMARK 500 4 LEU B 125 157.09 57.84 REMARK 500 4 SER B 130 -57.04 84.80 REMARK 500 5 ILE A 18 147.33 60.76 REMARK 500 5 ALA A 21 137.25 63.52 REMARK 500 5 LEU B 125 151.41 59.05 REMARK 500 6 LEU A 3 154.65 66.48 REMARK 500 6 SER A 10 127.25 62.79 REMARK 500 6 ALA A 21 132.49 64.87 REMARK 500 6 LEU B 125 154.08 59.20 REMARK 500 6 LEU B 131 -64.89 69.95 REMARK 500 7 ILE A 18 148.05 60.88 REMARK 500 7 LEU B 125 149.64 60.52 REMARK 500 8 SER A 23 -57.86 76.25 REMARK 500 8 LEU B 125 153.56 60.77 REMARK 500 10 LEU B 125 154.22 59.65 REMARK 500 11 LEU B 125 155.47 61.52 REMARK 500 11 LEU B 131 -67.37 73.69 REMARK 500 12 LEU B 125 154.79 59.53 REMARK 500 13 LEU B 125 156.92 57.70 REMARK 500 14 ILE A 18 155.13 60.32 REMARK 500 14 LEU B 125 154.69 59.58 REMARK 500 15 ILE A 18 140.49 61.60 REMARK 500 15 LEU B 125 153.71 59.34 REMARK 500 16 LEU B 125 149.67 60.26 REMARK 500 17 ILE A 18 153.06 59.42 REMARK 500 17 SER A 23 -64.00 67.58 REMARK 500 17 LEU B 125 152.62 59.15 REMARK 500 18 ILE A 18 153.94 60.16 REMARK 500 18 LEU B 125 152.29 62.62 REMARK 500 19 ILE A 18 156.30 58.88 REMARK 500 19 LEU B 125 151.39 59.50 REMARK 500 20 ILE A 18 150.07 60.65 REMARK 500 20 LEU B 125 152.27 59.71 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6581 RELATED DB: BMRB REMARK 900 SEQUENCE-SPECIFIC 1H, 13C AND 15N RESONANCE ASSIGNMENTS OF REMARK 900 HEMOPOIETIC CELL KINASE SH3 DOMAINS IN COMPLEX WITH A REMARK 900 SYNTHETIC PEPTIDE DBREF 2A4Y A 6 86 UNP P08631 HCK_HUMAN 60 140 SEQADV 2A4Y GLY A 1 UNP P08631 CLONING ARTIFACT SEQADV 2A4Y PRO A 2 UNP P08631 CLONING ARTIFACT SEQADV 2A4Y LEU A 3 UNP P08631 CLONING ARTIFACT SEQADV 2A4Y GLY A 4 UNP P08631 CLONING ARTIFACT SEQADV 2A4Y SER A 5 UNP P08631 CLONING ARTIFACT SEQRES 1 A 86 GLY PRO LEU GLY SER PRO GLY PRO ASN SER HIS ASN SER SEQRES 2 A 86 ASN THR PRO GLY ILE ARG GLU ALA GLY SER GLU ASP ILE SEQRES 3 A 86 ILE VAL VAL ALA LEU TYR ASP TYR GLU ALA ILE HIS HIS SEQRES 4 A 86 GLU ASP LEU SER PHE GLN LYS GLY ASP GLN MET VAL VAL SEQRES 5 A 86 LEU GLU GLU SER GLY GLU TRP TRP LYS ALA ARG SER LEU SEQRES 6 A 86 ALA THR ARG LYS GLU GLY TYR ILE PRO SER ASN TYR VAL SEQRES 7 A 86 ALA ARG VAL ASP SER LEU GLU THR SEQRES 1 B 14 ACE HIS SER LYS TYR PRO LEU PRO PRO LEU PRO SER LEU SEQRES 2 B 14 NH2 HET ACE B 119 6 HET NH2 B 132 3 HETNAM ACE ACETYL GROUP HETNAM NH2 AMINO GROUP FORMUL 2 ACE C2 H4 O FORMUL 2 NH2 H2 N HELIX 1 1 ASP A 82 LEU A 84 5 3 SHEET 1 A 5 GLY A 71 ILE A 73 0 SHEET 2 A 5 TRP A 60 SER A 64 -1 N TRP A 60 O ILE A 73 SHEET 3 A 5 GLN A 49 GLU A 54 -1 N LEU A 53 O LYS A 61 SHEET 4 A 5 ILE A 26 ALA A 30 -1 N ILE A 26 O VAL A 52 SHEET 5 A 5 VAL A 78 ARG A 80 -1 O ALA A 79 N VAL A 29 SHEET 1 B 2 TYR A 34 GLU A 35 0 SHEET 2 B 2 SER A 43 PHE A 44 -1 O PHE A 44 N TYR A 34 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1