HEADER LUMINESCENT PROTEIN 30-JUN-05 2A53 TITLE FLUORESCENT PROTEIN ASFP595, A143S, OFF-STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GFP-LIKE NON-FLUORESCENT CHROMOPROTEIN FP595 CHAIN 1; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: ASFP595; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: GFP-LIKE NON-FLUORESCENT CHROMOPROTEIN FP595 CHAIN 2; COMPND 8 CHAIN: B, D; COMPND 9 SYNONYM: ASFP595; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ANEMONIA SULCATA; SOURCE 3 ORGANISM_COMMON: SNAKE-LOCKS SEA ANEMONE; SOURCE 4 ORGANISM_TAXID: 6108; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21CODONPLUS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PQE30; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: ANEMONIA SULCATA; SOURCE 12 ORGANISM_COMMON: SNAKE-LOCKS SEA ANEMONE; SOURCE 13 ORGANISM_TAXID: 6108; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21CODONPLUS; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PQE30 KEYWDS ASCP, FLUORESCENT PROTEIN, CHROMOPROTEIN, PHOTOCHROMIC PROTEIN, KEYWDS 2 REVERSIBLE PHOTOSWITCH, LUMINESCENT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.ANDRESEN,M.C.WAHL,A.C.STIEL,F.GRAETER,L.SCHAEFER,S.TROWITZSCH, AUTHOR 2 G.WEBER,C.EGGELING,H.GRUBMUELLER,S.W.HELL,S.JAKOBS REVDAT 6 10-NOV-21 2A53 1 REMARK SEQADV LINK REVDAT 5 13-JUL-11 2A53 1 VERSN REVDAT 4 07-JUL-09 2A53 1 SEQADV REMARK REVDAT 3 24-FEB-09 2A53 1 VERSN REVDAT 2 20-SEP-05 2A53 1 JRNL REVDAT 1 16-AUG-05 2A53 0 JRNL AUTH M.ANDRESEN,M.C.WAHL,A.C.STIEL,F.GRAETER,L.SCHAEFER, JRNL AUTH 2 S.TROWITZSCH,G.WEBER,C.EGGELING,H.GRUBMUELLER,S.W.HELL, JRNL AUTH 3 S.JAKOBS JRNL TITL STRUCTURE AND MECHANISM OF THE REVERSIBLE PHOTOSWITCH OF A JRNL TITL 2 FLUORESCENT PROTEIN JRNL REF PROC.NATL.ACAD.SCI.USA V. 102 13070 2005 JRNL REFN ISSN 0027-8424 JRNL PMID 16135569 JRNL DOI 10.1073/PNAS.0502772102 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 75627 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3996 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5509 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.06 REMARK 3 BIN R VALUE (WORKING SET) : 0.2720 REMARK 3 BIN FREE R VALUE SET COUNT : 263 REMARK 3 BIN FREE R VALUE : 0.3170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3637 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 577 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.28000 REMARK 3 B22 (A**2) : -0.41000 REMARK 3 B33 (A**2) : 0.69000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.069 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.070 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.046 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.363 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3784 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5120 ; 1.587 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 467 ; 6.681 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 163 ;36.150 ;23.865 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 623 ;12.422 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;19.819 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 524 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2922 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1740 ; 0.209 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2554 ; 0.305 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 414 ; 0.145 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 103 ; 0.175 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 40 ; 0.128 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2398 ; 1.666 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3727 ; 2.261 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1620 ; 2.164 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1393 ; 3.101 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -1 A 62 REMARK 3 RESIDUE RANGE : B 65 B 232 REMARK 3 ORIGIN FOR THE GROUP (A): 25.8780 44.9980 14.7520 REMARK 3 T TENSOR REMARK 3 T11: -0.0221 T22: -0.0123 REMARK 3 T33: -0.0138 T12: -0.0087 REMARK 3 T13: -0.0167 T23: 0.0465 REMARK 3 L TENSOR REMARK 3 L11: 0.3265 L22: 0.9992 REMARK 3 L33: 0.4034 L12: -0.0428 REMARK 3 L13: 0.0061 L23: -0.1268 REMARK 3 S TENSOR REMARK 3 S11: -0.0218 S12: 0.0628 S13: 0.0821 REMARK 3 S21: -0.0724 S22: 0.1008 S23: 0.1854 REMARK 3 S31: -0.0282 S32: -0.0587 S33: -0.0790 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 4 C 62 REMARK 3 RESIDUE RANGE : D 65 D 232 REMARK 3 ORIGIN FOR THE GROUP (A): 27.4360 13.6890 13.0050 REMARK 3 T TENSOR REMARK 3 T11: -0.0044 T22: -0.0407 REMARK 3 T33: -0.0039 T12: -0.0240 REMARK 3 T13: -0.0410 T23: -0.0158 REMARK 3 L TENSOR REMARK 3 L11: 0.7391 L22: 1.2293 REMARK 3 L33: 0.4547 L12: -0.1229 REMARK 3 L13: 0.2120 L23: -0.0782 REMARK 3 S TENSOR REMARK 3 S11: 0.0174 S12: 0.0919 S13: -0.1801 REMARK 3 S21: -0.1709 S22: 0.0340 S23: 0.1779 REMARK 3 S31: 0.0810 S32: -0.0208 S33: -0.0514 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2A53 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-JUL-05. REMARK 100 THE DEPOSITION ID IS D_1000033498. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JAN-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MPG/DESY, HAMBURG REMARK 200 BEAMLINE : BW6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.05 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79647 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, NACL, PH 7.1, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.88250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.88250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 37.99800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 63.12950 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 37.99800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 63.12950 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 46.88250 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 37.99800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 63.12950 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 46.88250 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 37.99800 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 63.12950 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 30860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -190.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 75.99600 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 46.88250 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -10 REMARK 465 ARG A -9 REMARK 465 GLY A -8 REMARK 465 SER A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 MET C -10 REMARK 465 ARG C -9 REMARK 465 GLY C -8 REMARK 465 SER C -7 REMARK 465 HIS C -6 REMARK 465 HIS C -5 REMARK 465 HIS C -4 REMARK 465 HIS C -3 REMARK 465 HIS C -2 REMARK 465 HIS C -1 REMARK 465 GLY C 0 REMARK 465 SER C 1 REMARK 465 ALA C 2 REMARK 465 SER C 3 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU B 203 CB CG CD OE1 OE2 REMARK 480 LYS B 207 CG CD CE NZ REMARK 480 LYS C 29 CE NZ REMARK 480 LYS D 209 CD CE NZ REMARK 480 LYS D 212 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 203 CG2 VAL B 205 1.71 REMARK 500 O HOH B 674 O HOH B 815 1.95 REMARK 500 O HOH B 717 O HOH B 815 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS B 207 CB LYS B 207 CG 0.304 REMARK 500 LYS C 29 CD LYS C 29 CE 0.349 REMARK 500 LYS D 209 CG LYS D 209 CD 0.504 REMARK 500 LYS D 212 CG LYS D 212 CD 0.293 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 162 CA - CB - CG ANGL. DEV. = 15.2 DEGREES REMARK 500 GLU B 203 N - CA - CB ANGL. DEV. = 19.1 DEGREES REMARK 500 LYS D 209 CB - CG - CD ANGL. DEV. = -20.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE B 69 75.71 -101.86 REMARK 500 LYS B 207 -132.93 46.18 REMARK 500 PHE D 69 75.73 -101.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2A50 RELATED DB: PDB REMARK 900 THE SAME PROTEIN(NATIVE), OFF-STATE REMARK 900 RELATED ID: 2A52 RELATED DB: PDB REMARK 900 THE SAME PROTEIN(S158V), ON-STATE REMARK 900 RELATED ID: 2A54 RELATED DB: PDB REMARK 900 THE SAME PROTEIN(A143S), ON-STATE, 1MIN IRRADIATION REMARK 900 RELATED ID: 2A56 RELATED DB: PDB REMARK 900 THE SAME PROTEIN(A143S), ON-STATE, 5MIN IRRADIATION REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUES MET 63, TYR 64 AND GLY 65 AUTOCATALYTICALLY FORM THE REMARK 999 CHROMOPHORE NRQ LABELLED AS RESIDUE 65 IN THE COORDINATES. DBREF 2A53 A 2 62 UNP Q9GZ28 NFCP_ANESU 2 62 DBREF 2A53 C 2 62 UNP Q9GZ28 NFCP_ANESU 2 62 DBREF 2A53 B 65 232 UNP Q9GZ28 NFCP_ANESU 63 232 DBREF 2A53 D 65 232 UNP Q9GZ28 NFCP_ANESU 63 232 SEQADV 2A53 MET A -10 UNP Q9GZ28 EXPRESSION TAG SEQADV 2A53 ARG A -9 UNP Q9GZ28 EXPRESSION TAG SEQADV 2A53 GLY A -8 UNP Q9GZ28 EXPRESSION TAG SEQADV 2A53 SER A -7 UNP Q9GZ28 EXPRESSION TAG SEQADV 2A53 HIS A -6 UNP Q9GZ28 EXPRESSION TAG SEQADV 2A53 HIS A -5 UNP Q9GZ28 EXPRESSION TAG SEQADV 2A53 HIS A -4 UNP Q9GZ28 EXPRESSION TAG SEQADV 2A53 HIS A -3 UNP Q9GZ28 EXPRESSION TAG SEQADV 2A53 HIS A -2 UNP Q9GZ28 EXPRESSION TAG SEQADV 2A53 HIS A -1 UNP Q9GZ28 EXPRESSION TAG SEQADV 2A53 GLY A 0 UNP Q9GZ28 EXPRESSION TAG SEQADV 2A53 SER A 1 UNP Q9GZ28 EXPRESSION TAG SEQADV 2A53 MET C -10 UNP Q9GZ28 EXPRESSION TAG SEQADV 2A53 ARG C -9 UNP Q9GZ28 EXPRESSION TAG SEQADV 2A53 GLY C -8 UNP Q9GZ28 EXPRESSION TAG SEQADV 2A53 SER C -7 UNP Q9GZ28 EXPRESSION TAG SEQADV 2A53 HIS C -6 UNP Q9GZ28 EXPRESSION TAG SEQADV 2A53 HIS C -5 UNP Q9GZ28 EXPRESSION TAG SEQADV 2A53 HIS C -4 UNP Q9GZ28 EXPRESSION TAG SEQADV 2A53 HIS C -3 UNP Q9GZ28 EXPRESSION TAG SEQADV 2A53 HIS C -2 UNP Q9GZ28 EXPRESSION TAG SEQADV 2A53 HIS C -1 UNP Q9GZ28 EXPRESSION TAG SEQADV 2A53 GLY C 0 UNP Q9GZ28 EXPRESSION TAG SEQADV 2A53 SER C 1 UNP Q9GZ28 EXPRESSION TAG SEQADV 2A53 NRQ B 65 UNP Q9GZ28 MET 63 CHROMOPHORE SEQADV 2A53 NRQ B 65 UNP Q9GZ28 TYR 64 CHROMOPHORE SEQADV 2A53 NRQ B 65 UNP Q9GZ28 GLY 65 CHROMOPHORE SEQADV 2A53 SER B 143 UNP Q9GZ28 ALA 143 ENGINEERED MUTATION SEQADV 2A53 NRQ D 65 UNP Q9GZ28 MET 63 CHROMOPHORE SEQADV 2A53 NRQ D 65 UNP Q9GZ28 TYR 64 CHROMOPHORE SEQADV 2A53 NRQ D 65 UNP Q9GZ28 GLY 65 CHROMOPHORE SEQADV 2A53 SER D 143 UNP Q9GZ28 ALA 143 ENGINEERED MUTATION SEQRES 1 A 73 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER ALA SEQRES 2 A 73 SER PHE LEU LYS LYS THR MET PRO PHE LYS THR THR ILE SEQRES 3 A 73 GLU GLY THR VAL ASN GLY HIS TYR PHE LYS CYS THR GLY SEQRES 4 A 73 LYS GLY GLU GLY ASN PRO PHE GLU GLY THR GLN GLU MET SEQRES 5 A 73 LYS ILE GLU VAL ILE GLU GLY GLY PRO LEU PRO PHE ALA SEQRES 6 A 73 PHE HIS ILE LEU SER THR SER CYS SEQRES 1 B 168 NRQ SER LYS THR PHE ILE LYS TYR VAL SER GLY ILE PRO SEQRES 2 B 168 ASP TYR PHE LYS GLN SER PHE PRO GLU GLY PHE THR TRP SEQRES 3 B 168 GLU ARG THR THR THR TYR GLU ASP GLY GLY PHE LEU THR SEQRES 4 B 168 ALA HIS GLN ASP THR SER LEU ASP GLY ASP CYS LEU VAL SEQRES 5 B 168 TYR LYS VAL LYS ILE LEU GLY ASN ASN PHE PRO ALA ASP SEQRES 6 B 168 GLY PRO VAL MET GLN ASN LYS ALA GLY ARG TRP GLU PRO SEQRES 7 B 168 SER THR GLU ILE VAL TYR GLU VAL ASP GLY VAL LEU ARG SEQRES 8 B 168 GLY GLN SER LEU MET ALA LEU LYS CYS PRO GLY GLY ARG SEQRES 9 B 168 HIS LEU THR CYS HIS LEU HIS THR THR TYR ARG SER LYS SEQRES 10 B 168 LYS PRO ALA SER ALA LEU LYS MET PRO GLY PHE HIS PHE SEQRES 11 B 168 GLU ASP HIS ARG ILE GLU ILE MET GLU GLU VAL GLU LYS SEQRES 12 B 168 GLY LYS CYS TYR LYS GLN TYR GLU ALA ALA VAL GLY ARG SEQRES 13 B 168 TYR CYS ASP ALA ALA PRO SER LYS LEU GLY HIS ASN SEQRES 1 C 73 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER ALA SEQRES 2 C 73 SER PHE LEU LYS LYS THR MET PRO PHE LYS THR THR ILE SEQRES 3 C 73 GLU GLY THR VAL ASN GLY HIS TYR PHE LYS CYS THR GLY SEQRES 4 C 73 LYS GLY GLU GLY ASN PRO PHE GLU GLY THR GLN GLU MET SEQRES 5 C 73 LYS ILE GLU VAL ILE GLU GLY GLY PRO LEU PRO PHE ALA SEQRES 6 C 73 PHE HIS ILE LEU SER THR SER CYS SEQRES 1 D 168 NRQ SER LYS THR PHE ILE LYS TYR VAL SER GLY ILE PRO SEQRES 2 D 168 ASP TYR PHE LYS GLN SER PHE PRO GLU GLY PHE THR TRP SEQRES 3 D 168 GLU ARG THR THR THR TYR GLU ASP GLY GLY PHE LEU THR SEQRES 4 D 168 ALA HIS GLN ASP THR SER LEU ASP GLY ASP CYS LEU VAL SEQRES 5 D 168 TYR LYS VAL LYS ILE LEU GLY ASN ASN PHE PRO ALA ASP SEQRES 6 D 168 GLY PRO VAL MET GLN ASN LYS ALA GLY ARG TRP GLU PRO SEQRES 7 D 168 SER THR GLU ILE VAL TYR GLU VAL ASP GLY VAL LEU ARG SEQRES 8 D 168 GLY GLN SER LEU MET ALA LEU LYS CYS PRO GLY GLY ARG SEQRES 9 D 168 HIS LEU THR CYS HIS LEU HIS THR THR TYR ARG SER LYS SEQRES 10 D 168 LYS PRO ALA SER ALA LEU LYS MET PRO GLY PHE HIS PHE SEQRES 11 D 168 GLU ASP HIS ARG ILE GLU ILE MET GLU GLU VAL GLU LYS SEQRES 12 D 168 GLY LYS CYS TYR LYS GLN TYR GLU ALA ALA VAL GLY ARG SEQRES 13 D 168 TYR CYS ASP ALA ALA PRO SER LYS LEU GLY HIS ASN MODRES 2A53 NRQ B 65 MET MODRES 2A53 NRQ B 65 TYR MODRES 2A53 NRQ B 65 GLY MODRES 2A53 NRQ D 65 MET MODRES 2A53 NRQ D 65 TYR MODRES 2A53 NRQ D 65 GLY HET NRQ B 65 23 HET NRQ D 65 23 HET CL B 601 1 HETNAM NRQ {(4Z)-4-(4-HYDROXYBENZYLIDENE)-2-[3-(METHYLTHIO) HETNAM 2 NRQ PROPANIMIDOYL]-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1- HETNAM 3 NRQ YL}ACETIC ACID HETNAM CL CHLORIDE ION HETSYN NRQ CHROMOPHORE (MET-TYR-GLY) FORMUL 2 NRQ 2(C16 H17 N3 O4 S) FORMUL 5 CL CL 1- FORMUL 6 HOH *577(H2 O) HELIX 1 1 SER A 1 LEU A 5 5 5 HELIX 2 2 ALA A 54 CYS A 62 5 9 HELIX 3 3 PHE B 80 PHE B 84 5 5 HELIX 4 4 PRO B 183 LEU B 187 5 5 HELIX 5 5 ALA C 54 CYS C 62 5 9 HELIX 6 6 PHE D 80 PHE D 84 5 5 HELIX 7 7 PRO D 183 LEU D 187 5 5 SHEET 1 A11 LYS B 71 TYR B 72 0 SHEET 2 A11 CYS B 210 ARG B 220 1 O ALA B 217 N LYS B 71 SHEET 3 A11 THR A 38 GLU A 47 -1 N ILE A 43 O TYR B 211 SHEET 4 A11 HIS A 22 ASN A 33 -1 N THR A 27 O GLU A 44 SHEET 5 A11 MET A 9 VAL A 19 -1 N ILE A 15 O CYS A 26 SHEET 6 A11 CYS B 114 ASN B 124 1 O GLY B 123 N THR A 18 SHEET 7 A11 PHE B 101 ASP B 111 -1 N ASP B 111 O CYS B 114 SHEET 8 A11 PHE B 88 TYR B 96 -1 N PHE B 88 O THR B 108 SHEET 9 A11 HIS B 169 SER B 180 -1 O ARG B 179 N THR B 89 SHEET 10 A11 VAL B 153 LYS B 163 -1 N LEU B 162 O LEU B 170 SHEET 11 A11 ARG B 139 TRP B 140 -1 N ARG B 139 O LYS B 163 SHEET 1 B 6 LYS B 71 TYR B 72 0 SHEET 2 B 6 CYS B 210 ARG B 220 1 O ALA B 217 N LYS B 71 SHEET 3 B 6 HIS B 193 GLU B 206 -1 N PHE B 194 O ARG B 220 SHEET 4 B 6 SER B 143 VAL B 150 -1 N GLU B 145 O GLU B 195 SHEET 5 B 6 VAL B 153 LYS B 163 -1 O ARG B 155 N TYR B 148 SHEET 6 B 6 ARG B 139 TRP B 140 -1 N ARG B 139 O LYS B 163 SHEET 1 C11 LYS D 71 TYR D 72 0 SHEET 2 C11 CYS D 210 ARG D 220 1 O GLY D 219 N LYS D 71 SHEET 3 C11 THR C 38 GLU C 47 -1 N ILE C 43 O TYR D 211 SHEET 4 C11 HIS C 22 ASN C 33 -1 N THR C 27 O GLU C 44 SHEET 5 C11 MET C 9 VAL C 19 -1 N MET C 9 O GLY C 32 SHEET 6 C11 CYS D 114 ASN D 124 1 O GLY D 123 N THR C 18 SHEET 7 C11 PHE D 101 ASP D 111 -1 N THR D 103 O LEU D 122 SHEET 8 C11 PHE D 88 TYR D 96 -1 N PHE D 88 O THR D 108 SHEET 9 C11 ARG D 168 SER D 180 -1 O ARG D 179 N THR D 89 SHEET 10 C11 VAL D 153 CYS D 164 -1 N LEU D 154 O TYR D 178 SHEET 11 C11 ARG D 139 TRP D 140 -1 N ARG D 139 O LYS D 163 SHEET 1 D 6 LYS D 71 TYR D 72 0 SHEET 2 D 6 CYS D 210 ARG D 220 1 O GLY D 219 N LYS D 71 SHEET 3 D 6 HIS D 193 GLU D 206 -1 N GLU D 200 O TYR D 214 SHEET 4 D 6 SER D 143 VAL D 150 -1 N GLU D 145 O GLU D 195 SHEET 5 D 6 VAL D 153 CYS D 164 -1 O ARG D 155 N TYR D 148 SHEET 6 D 6 ARG D 139 TRP D 140 -1 N ARG D 139 O LYS D 163 LINK C3 NRQ B 65 N SER B 66 1555 1555 1.33 LINK C3 NRQ D 65 N SER D 66 1555 1555 1.33 CISPEP 1 GLY A 49 PRO A 50 0 -3.21 CISPEP 2 PHE B 84 PRO B 85 0 10.52 CISPEP 3 LYS B 207 GLY B 208 0 4.98 CISPEP 4 GLY C 49 PRO C 50 0 -3.22 CISPEP 5 PHE D 84 PRO D 85 0 9.20 SITE 1 AC1 2 HIS B 169 PHE B 192 CRYST1 75.996 126.259 93.765 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013159 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007920 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010665 0.00000