HEADER IMMUNE SYSTEM 03-JUL-05 2A6K TITLE CRYSTAL STRUCTURE ANALYSIS OF THE GERMLINE ANTIBODY 36-65 FAB IN TITLE 2 COMPLEX WITH THE DODECAPEPTIDE SLGDNLTNHNLR COMPND MOL_ID: 1; COMPND 2 MOLECULE: GERMLINE ANTIBODY 36-65 FAB LIGHT CHAIN; COMPND 3 CHAIN: A, L; COMPND 4 FRAGMENT: FAB; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: GERMLINE ANTIBODY 36-65 FAB HEAVY CHAIN; COMPND 7 CHAIN: B, H; COMPND 8 FRAGMENT: FAB; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: DODECAPEPTIDE: SLGDNLTNHNLR; COMPND 11 CHAIN: P; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 OTHER_DETAILS: MOUSE MONOCLONAL; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 8 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 9 ORGANISM_TAXID: 10090; SOURCE 10 OTHER_DETAILS: MOUSE MONOCLONAL; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: SYNTHESIZED PEPTIDE KEYWDS IMMUNOGLOBULIN FOLD, FAB-PEPTIDE COMPLEX, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR D.K.SETHI,A.AGARWAL,V.MANIVEL,K.V.RAO,D.M.SALUNKE REVDAT 4 21-MAR-18 2A6K 1 JRNL REVDAT 3 11-OCT-17 2A6K 1 REMARK REVDAT 2 24-FEB-09 2A6K 1 VERSN REVDAT 1 13-JUN-06 2A6K 0 JRNL AUTH D.K.SETHI,A.AGARWAL,V.MANIVEL,K.V.RAO,D.M.SALUNKE JRNL TITL DIFFERENTIAL EPITOPE POSITIONING WITHIN THE GERMLINE JRNL TITL 2 ANTIBODY PARATOPE ENHANCES PROMISCUITY IN THE PRIMARY IMMUNE JRNL TITL 3 RESPONSE. JRNL REF IMMUNITY V. 24 429 2006 JRNL REFN ISSN 1074-7613 JRNL PMID 16618601 JRNL DOI 10.1016/J.IMMUNI.2006.02.010 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 88.6 REMARK 3 NUMBER OF REFLECTIONS : 18490 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.245 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.700 REMARK 3 FREE R VALUE TEST SET COUNT : 1813 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6661 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 103 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.735 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2A6K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JUL-05. REMARK 100 THE DEPOSITION ID IS D_1000033550. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-AUG-03 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : 6.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOMAR REMARK 200 DATA SCALING SOFTWARE : MARSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19662 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 200 DATA REDUNDANCY : 3.040 REMARK 200 R MERGE (I) : 0.12300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 8000, CACODYLATE, AZIDE, PH REMARK 280 6.7, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 72.46000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA B 137 REMARK 465 ALA B 138 REMARK 465 GLN B 139 REMARK 465 THR B 140 REMARK 465 SER H 136 REMARK 465 ALA H 137 REMARK 465 ALA H 138 REMARK 465 GLN H 139 REMARK 465 THR H 140 REMARK 465 ASN H 141 REMARK 465 SER P 1 REMARK 465 LEU P 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 3 CG CD OE1 NE2 REMARK 470 THR A 7 OG1 CG2 REMARK 470 SER A 65 OG REMARK 470 THR A 93 OG1 CG2 REMARK 470 GLU A 154 CG CD OE1 OE2 REMARK 470 LYS B 19 CG CD CE NZ REMARK 470 GLN B 43 CG CD OE1 NE2 REMARK 470 LYS B 74 CG CD CE NZ REMARK 470 LYS B 123 CG CD CE NZ REMARK 470 THR B 124 OG1 CG2 REMARK 470 GLN B 179 CG CD OE1 NE2 REMARK 470 ASP B 181 CG OD1 OD2 REMARK 470 GLN L 3 CG CD OE1 NE2 REMARK 470 THR L 93 OG1 CG2 REMARK 470 LYS H 23 CG CD CE NZ REMARK 470 GLN H 43 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP P 4 N ASN P 5 1.76 REMARK 500 OE2 GLU A 105 OH TYR A 173 2.04 REMARK 500 OG SER L 12 OE1 GLU L 105 2.05 REMARK 500 O PRO H 220 N ASP H 222 2.12 REMARK 500 OH TYR H 106 CA HIS P 9 2.16 REMARK 500 OD1 ASP B 73 OG SER B 75 2.18 REMARK 500 O TRP A 148 O GLU A 154 2.19 REMARK 500 O HIS L 189 NH1 ARG L 211 2.19 REMARK 500 O HIS P 9 O HOH P 87 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU B 199 NH1 ARG L 188 1465 2.09 REMARK 500 OG SER A 60 OE1 GLU L 79 2555 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR B 102 CB TYR B 102 CG 0.111 REMARK 500 GLU L 154 CB GLU L 154 CG 0.129 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR B 101 CA - CB - CG ANGL. DEV. = 12.9 DEGREES REMARK 500 TYR B 101 N - CA - C ANGL. DEV. = 24.5 DEGREES REMARK 500 PRO B 208 C - N - CA ANGL. DEV. = 9.3 DEGREES REMARK 500 GLU L 154 N - CA - CB ANGL. DEV. = -12.7 DEGREES REMARK 500 CYS H 148 CA - CB - SG ANGL. DEV. = 7.7 DEGREES REMARK 500 ASP H 222 N - CA - C ANGL. DEV. = 21.2 DEGREES REMARK 500 ASN P 5 CA - C - N ANGL. DEV. = -14.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 8 106.69 106.49 REMARK 500 TYR A 32 69.95 -116.72 REMARK 500 ASP A 41 -5.47 -57.96 REMARK 500 LEU A 47 -55.63 -120.05 REMARK 500 TYR A 50 89.24 53.30 REMARK 500 SER A 52 -177.22 60.67 REMARK 500 ARG A 53 -61.62 91.99 REMARK 500 SER A 56 -44.95 -136.32 REMARK 500 ILE A 75 77.83 -110.58 REMARK 500 SER A 76 -38.63 -26.98 REMARK 500 ALA A 84 -162.63 -164.36 REMARK 500 ASP A 110 144.15 -37.32 REMARK 500 ALA A 112 120.97 84.15 REMARK 500 ASN A 138 73.47 57.28 REMARK 500 GLU A 154 -136.73 23.42 REMARK 500 ARG A 155 106.16 89.36 REMARK 500 THR A 200 -18.05 -48.52 REMARK 500 SER A 201 145.28 -174.34 REMARK 500 SER B 16 -131.39 -73.79 REMARK 500 SER B 17 -171.86 -171.58 REMARK 500 VAL B 18 141.91 178.31 REMARK 500 PRO B 41 -39.29 -38.41 REMARK 500 GLN B 43 159.52 21.19 REMARK 500 ILE B 48 -74.16 -63.62 REMARK 500 GLU B 62 -53.26 -21.25 REMARK 500 LYS B 63 -4.88 -58.74 REMARK 500 SER B 75 -50.27 -145.13 REMARK 500 SER B 77 57.37 33.37 REMARK 500 SER B 85 63.69 37.41 REMARK 500 GLU B 89 13.17 -56.67 REMARK 500 ALA B 92 -166.88 174.46 REMARK 500 TYR B 102 121.86 -14.14 REMARK 500 SER B 105 124.63 140.26 REMARK 500 THR B 124 113.33 -36.03 REMARK 500 PHE B 154 140.89 177.15 REMARK 500 SER B 168 -64.70 -99.32 REMARK 500 GLN B 179 -104.35 -81.09 REMARK 500 SER B 180 72.58 -103.70 REMARK 500 ARG B 221 168.87 73.49 REMARK 500 THR L 7 96.27 -66.48 REMARK 500 THR L 8 99.64 138.08 REMARK 500 TYR L 32 70.37 -102.10 REMARK 500 LEU L 47 -60.38 -107.53 REMARK 500 TYR L 50 91.84 53.17 REMARK 500 SER L 52 179.47 74.17 REMARK 500 ARG L 53 -66.22 87.56 REMARK 500 HIS L 55 -163.44 -78.74 REMARK 500 SER L 56 -38.84 -147.08 REMARK 500 ILE L 75 58.60 -109.74 REMARK 500 SER L 76 -42.60 -9.56 REMARK 500 REMARK 500 THIS ENTRY HAS 80 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2A6D RELATED DB: PDB REMARK 900 RELATED ID: 2A6I RELATED DB: PDB REMARK 900 RELATED ID: 2A6J RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE IS NOT DEPOSITED IN ANY SEQUENCE DATABASE REMARK 999 EXCEPT RESIDUES 1 TO 120 OF CHAINS B,H WHICH CORRESPOND REMARK 999 TO DEPOSITED SEQUENCE OF THE HEAVY CHAIN VARIABLE REGION REMARK 999 OF ANTI-ARSONATE ANTIBODY 36-65 DBREF 2A6K A 1 214 PDB 2A6K 2A6K 1 214 DBREF 2A6K B 2 221 UNP Q6PF95 Q6PF95_MOUSE 21 234 DBREF 2A6K L 1 214 PDB 2A6K 2A6K 1 214 DBREF 2A6K H 2 221 UNP Q6PF95 Q6PF95_MOUSE 21 234 DBREF 2A6K P 1 12 PDB 2A6K 2A6K 1 12 SEQRES 1 A 214 ASP ILE GLN MET THR GLN THR THR SER SER LEU SER ALA SEQRES 2 A 214 SER LEU GLY ASP ARG VAL THR ILE SER CYS ARG ALA SER SEQRES 3 A 214 GLN ASP ILE SER ASN TYR LEU ASN TRP TYR GLN GLN LYS SEQRES 4 A 214 PRO ASP GLY THR VAL LYS LEU LEU ILE TYR TYR THR SER SEQRES 5 A 214 ARG LEU HIS SER GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 A 214 GLY SER GLY THR ASP TYR SER LEU THR ILE SER ASN LEU SEQRES 7 A 214 GLU GLN GLU ASP ILE ALA THR TYR PHE CYS GLN GLN GLY SEQRES 8 A 214 ASN THR LEU PRO ARG THR PHE GLY GLY GLY THR LYS LEU SEQRES 9 A 214 GLU ILE LYS ARG ALA ASP ALA ALA PRO THR VAL SER ILE SEQRES 10 A 214 PHE PRO PRO SER SER GLU GLN LEU THR SER GLY GLY ALA SEQRES 11 A 214 SER VAL VAL CYS PHE LEU ASN ASN PHE TYR PRO LYS ASP SEQRES 12 A 214 ILE ASN VAL LYS TRP LYS ILE ASP GLY SER GLU ARG GLN SEQRES 13 A 214 ASN GLY VAL LEU ASN SER TRP THR ASP GLN ASP SER LYS SEQRES 14 A 214 ASP SER THR TYR SER MET SER SER THR LEU THR LEU THR SEQRES 15 A 214 LYS ASP GLU TYR GLU ARG HIS ASN SER TYR THR CYS GLU SEQRES 16 A 214 ALA THR HIS LYS THR SER THR SER PRO ILE VAL LYS SER SEQRES 17 A 214 PHE ASN ARG ASN GLU CYS SEQRES 1 B 222 GLU VAL GLN LEU GLN GLN SER GLY ALA GLU LEU VAL ARG SEQRES 2 B 222 ALA GLY SER SER VAL LYS MET SER CYS LYS ALA SER GLY SEQRES 3 B 222 TYR THR PHE THR SER TYR GLY ILE ASN TRP VAL LYS GLN SEQRES 4 B 222 ARG PRO GLY GLN GLY LEU GLU TRP ILE GLY TYR ILE ASN SEQRES 5 B 222 PRO GLY ASN GLY TYR THR LYS TYR ASN GLU LYS PHE LYS SEQRES 6 B 222 GLY LYS THR THR LEU THR VAL ASP LYS SER SER SER THR SEQRES 7 B 222 ALA TYR MET GLN LEU ARG SER LEU THR SER GLU ASP SER SEQRES 8 B 222 ALA VAL TYR PHE CYS ALA ARG SER VAL TYR TYR GLY GLY SEQRES 9 B 222 SER TYR TYR PHE ASP TYR TRP GLY GLN GLY THR THR LEU SEQRES 10 B 222 THR VAL SER SER ALA LYS THR THR PRO PRO SER VAL TYR SEQRES 11 B 222 PRO LEU ALA PRO GLY SER ALA ALA GLN THR ASN SER MET SEQRES 12 B 222 VAL THR LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU SEQRES 13 B 222 PRO VAL THR VAL THR TRP ASN SER GLY SER LEU SER SER SEQRES 14 B 222 GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER ASP LEU SEQRES 15 B 222 TYR THR LEU SER SER SER VAL THR VAL PRO SER SER PRO SEQRES 16 B 222 ARG PRO SER GLU THR VAL THR CYS ASN VAL ALA HIS PRO SEQRES 17 B 222 ALA SER SER THR LYS VAL ASP LYS LYS ILE VAL PRO ARG SEQRES 18 B 222 ASP SEQRES 1 L 214 ASP ILE GLN MET THR GLN THR THR SER SER LEU SER ALA SEQRES 2 L 214 SER LEU GLY ASP ARG VAL THR ILE SER CYS ARG ALA SER SEQRES 3 L 214 GLN ASP ILE SER ASN TYR LEU ASN TRP TYR GLN GLN LYS SEQRES 4 L 214 PRO ASP GLY THR VAL LYS LEU LEU ILE TYR TYR THR SER SEQRES 5 L 214 ARG LEU HIS SER GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 L 214 GLY SER GLY THR ASP TYR SER LEU THR ILE SER ASN LEU SEQRES 7 L 214 GLU GLN GLU ASP ILE ALA THR TYR PHE CYS GLN GLN GLY SEQRES 8 L 214 ASN THR LEU PRO ARG THR PHE GLY GLY GLY THR LYS LEU SEQRES 9 L 214 GLU ILE LYS ARG ALA ASP ALA ALA PRO THR VAL SER ILE SEQRES 10 L 214 PHE PRO PRO SER SER GLU GLN LEU THR SER GLY GLY ALA SEQRES 11 L 214 SER VAL VAL CYS PHE LEU ASN ASN PHE TYR PRO LYS ASP SEQRES 12 L 214 ILE ASN VAL LYS TRP LYS ILE ASP GLY SER GLU ARG GLN SEQRES 13 L 214 ASN GLY VAL LEU ASN SER TRP THR ASP GLN ASP SER LYS SEQRES 14 L 214 ASP SER THR TYR SER MET SER SER THR LEU THR LEU THR SEQRES 15 L 214 LYS ASP GLU TYR GLU ARG HIS ASN SER TYR THR CYS GLU SEQRES 16 L 214 ALA THR HIS LYS THR SER THR SER PRO ILE VAL LYS SER SEQRES 17 L 214 PHE ASN ARG ASN GLU CYS SEQRES 1 H 222 GLU VAL GLN LEU GLN GLN SER GLY ALA GLU LEU VAL ARG SEQRES 2 H 222 ALA GLY SER SER VAL LYS MET SER CYS LYS ALA SER GLY SEQRES 3 H 222 TYR THR PHE THR SER TYR GLY ILE ASN TRP VAL LYS GLN SEQRES 4 H 222 ARG PRO GLY GLN GLY LEU GLU TRP ILE GLY TYR ILE ASN SEQRES 5 H 222 PRO GLY ASN GLY TYR THR LYS TYR ASN GLU LYS PHE LYS SEQRES 6 H 222 GLY LYS THR THR LEU THR VAL ASP LYS SER SER SER THR SEQRES 7 H 222 ALA TYR MET GLN LEU ARG SER LEU THR SER GLU ASP SER SEQRES 8 H 222 ALA VAL TYR PHE CYS ALA ARG SER VAL TYR TYR GLY GLY SEQRES 9 H 222 SER TYR TYR PHE ASP TYR TRP GLY GLN GLY THR THR LEU SEQRES 10 H 222 THR VAL SER SER ALA LYS THR THR PRO PRO SER VAL TYR SEQRES 11 H 222 PRO LEU ALA PRO GLY SER ALA ALA GLN THR ASN SER MET SEQRES 12 H 222 VAL THR LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU SEQRES 13 H 222 PRO VAL THR VAL THR TRP ASN SER GLY SER LEU SER SER SEQRES 14 H 222 GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER ASP LEU SEQRES 15 H 222 TYR THR LEU SER SER SER VAL THR VAL PRO SER SER PRO SEQRES 16 H 222 ARG PRO SER GLU THR VAL THR CYS ASN VAL ALA HIS PRO SEQRES 17 H 222 ALA SER SER THR LYS VAL ASP LYS LYS ILE VAL PRO ARG SEQRES 18 H 222 ASP SEQRES 1 P 12 SER LEU GLY ASP ASN LEU THR ASN HIS ASN LEU ARG FORMUL 6 HOH *103(H2 O) HELIX 1 1 GLU A 79 ILE A 83 5 5 HELIX 2 2 SER A 121 SER A 127 1 7 HELIX 3 3 LYS A 183 ARG A 188 1 6 HELIX 4 4 THR B 28 TYR B 32 5 5 HELIX 5 5 THR B 87 SER B 91 5 5 HELIX 6 6 SER B 164 SER B 166 5 3 HELIX 7 7 PRO B 208 SER B 211 5 4 HELIX 8 8 GLU L 79 ILE L 83 5 5 HELIX 9 9 SER L 121 THR L 126 1 6 HELIX 10 10 LYS L 183 GLU L 187 1 5 HELIX 11 11 THR H 28 TYR H 32 5 5 HELIX 12 12 THR H 87 SER H 91 5 5 HELIX 13 13 SER H 164 SER H 166 5 3 HELIX 14 14 PRO H 208 SER H 211 5 4 SHEET 1 A 4 MET A 4 THR A 5 0 SHEET 2 A 4 THR A 20 ALA A 25 -1 O ARG A 24 N THR A 5 SHEET 3 A 4 ASP A 70 ILE A 75 -1 O TYR A 71 N CYS A 23 SHEET 4 A 4 PHE A 62 SER A 67 -1 N SER A 63 O THR A 74 SHEET 1 B 5 SER A 10 ALA A 13 0 SHEET 2 B 5 THR A 102 ILE A 106 1 O LYS A 103 N LEU A 11 SHEET 3 B 5 THR A 85 GLN A 90 -1 N TYR A 86 O THR A 102 SHEET 4 B 5 LEU A 33 GLN A 38 -1 N ASN A 34 O GLN A 89 SHEET 5 B 5 VAL A 44 ILE A 48 -1 O LYS A 45 N GLN A 37 SHEET 1 C 4 SER A 10 ALA A 13 0 SHEET 2 C 4 THR A 102 ILE A 106 1 O LYS A 103 N LEU A 11 SHEET 3 C 4 THR A 85 GLN A 90 -1 N TYR A 86 O THR A 102 SHEET 4 C 4 THR A 97 PHE A 98 -1 O THR A 97 N GLN A 90 SHEET 1 D 4 THR A 114 PHE A 118 0 SHEET 2 D 4 GLY A 129 PHE A 139 -1 O VAL A 133 N PHE A 118 SHEET 3 D 4 TYR A 173 THR A 182 -1 O MET A 175 N LEU A 136 SHEET 4 D 4 VAL A 159 TRP A 163 -1 N LEU A 160 O THR A 178 SHEET 1 E 3 ASN A 145 ILE A 150 0 SHEET 2 E 3 SER A 191 HIS A 198 -1 O GLU A 195 N LYS A 147 SHEET 3 E 3 SER A 201 ASN A 210 -1 O LYS A 207 N CYS A 194 SHEET 1 F 4 GLN B 3 GLN B 6 0 SHEET 2 F 4 SER B 17 SER B 25 -1 O SER B 25 N GLN B 3 SHEET 3 F 4 THR B 78 ARG B 84 -1 O ALA B 79 N CYS B 22 SHEET 4 F 4 THR B 68 ASP B 73 -1 N THR B 71 O TYR B 80 SHEET 1 G 6 GLU B 10 LEU B 11 0 SHEET 2 G 6 THR B 115 THR B 118 1 O THR B 118 N GLU B 10 SHEET 3 G 6 ALA B 92 VAL B 100 -1 N ALA B 92 O LEU B 117 SHEET 4 G 6 ILE B 34 GLN B 39 -1 N GLN B 39 O VAL B 93 SHEET 5 G 6 LEU B 45 ILE B 51 -1 O ILE B 48 N TRP B 36 SHEET 6 G 6 THR B 58 TYR B 60 -1 O LYS B 59 N TYR B 50 SHEET 1 H 4 GLU B 10 LEU B 11 0 SHEET 2 H 4 THR B 115 THR B 118 1 O THR B 118 N GLU B 10 SHEET 3 H 4 ALA B 92 VAL B 100 -1 N ALA B 92 O LEU B 117 SHEET 4 H 4 TYR B 107 TRP B 111 -1 O TYR B 107 N VAL B 100 SHEET 1 I 4 SER B 128 LEU B 132 0 SHEET 2 I 4 MET B 143 TYR B 153 -1 O LEU B 149 N TYR B 130 SHEET 3 I 4 TYR B 183 PRO B 192 -1 O VAL B 191 N VAL B 144 SHEET 4 I 4 VAL B 171 THR B 173 -1 N HIS B 172 O SER B 188 SHEET 1 J 4 SER B 128 LEU B 132 0 SHEET 2 J 4 MET B 143 TYR B 153 -1 O LEU B 149 N TYR B 130 SHEET 3 J 4 TYR B 183 PRO B 192 -1 O VAL B 191 N VAL B 144 SHEET 4 J 4 VAL B 177 LEU B 178 -1 N VAL B 177 O THR B 184 SHEET 1 K 3 THR B 159 TRP B 162 0 SHEET 2 K 3 THR B 202 HIS B 207 -1 O ASN B 204 N THR B 161 SHEET 3 K 3 THR B 212 LYS B 217 -1 O VAL B 214 N VAL B 205 SHEET 1 L 5 SER L 10 ALA L 13 0 SHEET 2 L 5 THR L 102 ILE L 106 1 O LYS L 103 N LEU L 11 SHEET 3 L 5 THR L 85 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 L 5 LEU L 33 GLN L 38 -1 N GLN L 38 O THR L 85 SHEET 5 L 5 VAL L 44 ILE L 48 -1 O LEU L 47 N TRP L 35 SHEET 1 M 4 SER L 10 ALA L 13 0 SHEET 2 M 4 THR L 102 ILE L 106 1 O LYS L 103 N LEU L 11 SHEET 3 M 4 THR L 85 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 M 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 N 3 THR L 20 ARG L 24 0 SHEET 2 N 3 ASP L 70 ILE L 75 -1 O TYR L 71 N CYS L 23 SHEET 3 N 3 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 O 4 THR L 114 PHE L 118 0 SHEET 2 O 4 GLY L 129 PHE L 139 -1 O VAL L 133 N PHE L 118 SHEET 3 O 4 TYR L 173 THR L 182 -1 O MET L 175 N LEU L 136 SHEET 4 O 4 VAL L 159 TRP L 163 -1 N LEU L 160 O THR L 178 SHEET 1 P 4 GLU L 154 ARG L 155 0 SHEET 2 P 4 ASN L 145 ILE L 150 -1 N TRP L 148 O ARG L 155 SHEET 3 P 4 SER L 191 THR L 197 -1 O THR L 197 N ASN L 145 SHEET 4 P 4 ILE L 205 ASN L 210 -1 O LYS L 207 N CYS L 194 SHEET 1 Q 2 GLN H 3 GLN H 5 0 SHEET 2 Q 2 LYS H 23 SER H 25 -1 O LYS H 23 N GLN H 5 SHEET 1 R 6 GLU H 10 LEU H 11 0 SHEET 2 R 6 THR H 115 THR H 118 1 O THR H 116 N GLU H 10 SHEET 3 R 6 ALA H 92 TYR H 101 -1 N TYR H 94 O THR H 115 SHEET 4 R 6 ILE H 34 GLN H 39 -1 N VAL H 37 O PHE H 95 SHEET 5 R 6 LEU H 45 ILE H 51 -1 O ILE H 48 N TRP H 36 SHEET 6 R 6 THR H 58 TYR H 60 -1 O LYS H 59 N TYR H 50 SHEET 1 S 4 GLU H 10 LEU H 11 0 SHEET 2 S 4 THR H 115 THR H 118 1 O THR H 116 N GLU H 10 SHEET 3 S 4 ALA H 92 TYR H 101 -1 N TYR H 94 O THR H 115 SHEET 4 S 4 TYR H 106 TRP H 111 -1 O TYR H 110 N ARG H 98 SHEET 1 T 3 VAL H 18 MET H 20 0 SHEET 2 T 3 ALA H 79 LEU H 83 -1 O LEU H 83 N VAL H 18 SHEET 3 T 3 THR H 68 VAL H 72 -1 N THR H 71 O TYR H 80 SHEET 1 U 4 SER H 128 LEU H 132 0 SHEET 2 U 4 MET H 143 TYR H 153 -1 O LEU H 149 N TYR H 130 SHEET 3 U 4 TYR H 183 PRO H 192 -1 O LEU H 185 N VAL H 150 SHEET 4 U 4 HIS H 172 THR H 173 -1 N HIS H 172 O SER H 188 SHEET 1 V 4 SER H 128 LEU H 132 0 SHEET 2 V 4 MET H 143 TYR H 153 -1 O LEU H 149 N TYR H 130 SHEET 3 V 4 TYR H 183 PRO H 192 -1 O LEU H 185 N VAL H 150 SHEET 4 V 4 VAL H 177 LEU H 178 -1 N VAL H 177 O THR H 184 SHEET 1 W 3 THR H 159 TRP H 162 0 SHEET 2 W 3 THR H 202 HIS H 207 -1 O ALA H 206 N THR H 159 SHEET 3 W 3 THR H 212 LYS H 217 -1 O THR H 212 N HIS H 207 SSBOND 1 CYS A 23 CYS A 88 1555 1555 2.02 SSBOND 2 CYS A 134 CYS A 194 1555 1555 2.03 SSBOND 3 CYS B 22 CYS B 96 1555 1555 2.03 SSBOND 4 CYS B 148 CYS B 203 1555 1555 2.03 SSBOND 5 CYS L 23 CYS L 88 1555 1555 2.04 SSBOND 6 CYS L 134 CYS L 194 1555 1555 2.05 SSBOND 7 CYS H 22 CYS H 96 1555 1555 2.02 SSBOND 8 CYS H 148 CYS H 203 1555 1555 2.03 CISPEP 1 LEU A 94 PRO A 95 0 -0.05 CISPEP 2 TYR A 140 PRO A 141 0 0.34 CISPEP 3 PHE B 154 PRO B 155 0 -0.33 CISPEP 4 GLU B 156 PRO B 157 0 -0.39 CISPEP 5 ARG B 196 PRO B 197 0 0.05 CISPEP 6 LEU L 94 PRO L 95 0 0.06 CISPEP 7 TYR L 140 PRO L 141 0 0.16 CISPEP 8 PHE H 154 PRO H 155 0 -0.50 CISPEP 9 GLU H 156 PRO H 157 0 0.02 CISPEP 10 ARG H 196 PRO H 197 0 -0.08 CRYST1 53.135 144.920 70.991 90.00 104.35 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018820 0.000000 0.004815 0.00000 SCALE2 0.000000 0.006900 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014540 0.00000