HEADER HYDROLASE 06-JUL-05 2A7U TITLE NMR SOLUTION STRUCTURE OF THE E.COLI F-ATPASE DELTA SUBUNIT N-TERMINAL TITLE 2 DOMAIN IN COMPLEX WITH ALPHA SUBUNIT N-TERMINAL 22 RESIDUES COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP SYNTHASE ALPHA CHAIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN, (RESIDUES 1-22); COMPND 5 SYNONYM: F-ATPASE ALPHA CHAIN; COMPND 6 EC: 3.6.3.14; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: REGULATORY UNIT; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: ATP SYNTHASE DELTA CHAIN; COMPND 11 CHAIN: B; COMPND 12 FRAGMENT: N-TERMINAL DOMAIN, (RESIDUES 2-135); COMPND 13 SYNONYM: F-ATPASE DELTA CHAIN; COMPND 14 EC: 3.6.3.14; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: SEQUENCE OCCURS NATURALLY IN E.COLI, GENES ATPA, SOURCE 4 PAPA, UNCA; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 7 ORGANISM_TAXID: 83334; SOURCE 8 STRAIN: O157:H7; SOURCE 9 GENE: ATPH, PAPE, UNCH; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 12 EXPRESSION_SYSTEM_STRAIN: 594; SOURCE 13 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS ALPHA HELIX BUNDLE, HYDROLASE EXPDTA SOLUTION NMR MDLTYP MINIMIZED AVERAGE AUTHOR S.WILKENS,D.BORCHARDT,J.WEBER,A.E.SENIOR REVDAT 4 01-MAY-24 2A7U 1 REMARK REVDAT 3 13-JUL-11 2A7U 1 VERSN REVDAT 2 24-FEB-09 2A7U 1 VERSN REVDAT 1 11-OCT-05 2A7U 0 JRNL AUTH S.WILKENS,D.BORCHARDT,J.WEBER,A.E.SENIOR JRNL TITL STRUCTURAL CHARACTERIZATION OF THE INTERACTION OF THE DELTA JRNL TITL 2 AND ALPHA SUBUNITS OF THE ESCHERICHIA COLI F(1)F(0)-ATP JRNL TITL 3 SYNTHASE BY NMR SPECTROSCOPY JRNL REF BIOCHEMISTRY V. 44 11786 2005 JRNL REFN ISSN 0006-2960 JRNL PMID 16128580 JRNL DOI 10.1021/BI0510678 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.8, X-PLOR 3.8 REMARK 3 AUTHORS : AT BRUNGER (X-PLOR), AT BRUNGER (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RMS DIFFERENCE OF NON-H ATOMS 1.114, REMARK 3 FOR THE BACKBONE ATOMS 0.6174 REMARK 4 REMARK 4 2A7U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUL-05. REMARK 100 THE DEPOSITION ID IS D_1000033596. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 295 REMARK 210 PH : 7.2 REMARK 210 IONIC STRENGTH : 50 MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.6 MM DELTA SUBUNIT N-TERMINAL REMARK 210 DOMAIN U-13C,15N; 0.9 MM ALPHA REMARK 210 SUBUNIT N-TERMINAL PEPTIDE; 10 REMARK 210 MM NA,K PHOSPHATE, PH 7.2, 3MM REMARK 210 NAN3, 0.1 MM EDTA; 93% H20, 7% REMARK 210 D20 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 13C/12C REMARK 210 FILTERED 2-D NOESY; 12C/12C REMARK 210 FILTERED 2-D NOESY; 14N/12C REMARK 210 FILTERED 2-D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX 98 REMARK 210 METHOD USED : DISTANCE GEOMETRY; SIMULATED REMARK 210 ANNEALING; MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 10 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : AVERAGED MINIMIZED STRUCTURE REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 RES C SSSEQI REMARK 465 ALA B 106 REMARK 465 GLU B 107 REMARK 465 VAL B 108 REMARK 465 ASP B 109 REMARK 465 VAL B 110 REMARK 465 ILE B 111 REMARK 465 SER B 112 REMARK 465 ALA B 113 REMARK 465 ALA B 114 REMARK 465 ALA B 115 REMARK 465 LEU B 116 REMARK 465 SER B 117 REMARK 465 GLU B 118 REMARK 465 GLN B 119 REMARK 465 GLN B 120 REMARK 465 LEU B 121 REMARK 465 ALA B 122 REMARK 465 LYS B 123 REMARK 465 ILE B 124 REMARK 465 SER B 125 REMARK 465 ALA B 126 REMARK 465 ALA B 127 REMARK 465 MET B 128 REMARK 465 GLU B 129 REMARK 465 LYS B 130 REMARK 465 ARG B 131 REMARK 465 LEU B 132 REMARK 465 SER B 133 REMARK 465 ARG B 134 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH21 ARG B 99 OE1 GLU B 103 1.51 REMARK 500 O ILE A 12 H ILE A 16 1.52 REMARK 500 O SER B 23 H TRP B 27 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 3 -34.64 178.92 REMARK 500 ASN A 20 45.60 -84.21 REMARK 500 VAL A 21 41.06 -140.83 REMARK 500 LYS B 39 37.29 -94.46 REMARK 500 GLU B 41 -64.21 -29.47 REMARK 500 GLU B 66 21.48 48.51 REMARK 500 GLN B 67 45.34 -93.06 REMARK 500 ARG B 84 33.08 -160.24 REMARK 500 ALA B 87 40.69 -85.59 REMARK 500 GLU B 103 37.28 -89.57 REMARK 500 ALA B 104 -28.35 -142.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 15 0.31 SIDE CHAIN REMARK 500 ARG B 8 0.30 SIDE CHAIN REMARK 500 ARG B 26 0.31 SIDE CHAIN REMARK 500 ARG B 77 0.29 SIDE CHAIN REMARK 500 ARG B 84 0.31 SIDE CHAIN REMARK 500 ARG B 99 0.21 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ABV RELATED DB: PDB REMARK 900 NMR SOLUTION STRUCTURE OF THE N-TERMINAL DOMAIN OF THE E.COLI F- REMARK 900 ATPASE DELTA SUBUNIT DBREF 2A7U A 1 22 UNP P00822 ATPA_ECOLI 1 22 DBREF 2A7U B 1 134 UNP P0ABA4 ATPD_ECOLI 2 135 SEQRES 1 A 22 MET GLN LEU ASN SER THR GLU ILE SER GLU LEU ILE LYS SEQRES 2 A 22 GLN ARG ILE ALA GLN PHE ASN VAL VAL SEQRES 1 B 134 SER GLU PHE ILE THR VAL ALA ARG PRO TYR ALA LYS ALA SEQRES 2 B 134 ALA PHE ASP PHE ALA VAL GLU HIS GLN SER VAL GLU ARG SEQRES 3 B 134 TRP GLN ASP MET LEU ALA PHE ALA ALA GLU VAL THR LYS SEQRES 4 B 134 ASN GLU GLN MET ALA GLU LEU LEU SER GLY ALA LEU ALA SEQRES 5 B 134 PRO GLU THR LEU ALA GLU SER PHE ILE ALA VAL CYS GLY SEQRES 6 B 134 GLU GLN LEU ASP GLU ASN GLY GLN ASN LEU ILE ARG VAL SEQRES 7 B 134 MET ALA GLU ASN GLY ARG LEU ASN ALA LEU PRO ASP VAL SEQRES 8 B 134 LEU GLU GLN PHE ILE HIS LEU ARG ALA VAL SER GLU ALA SEQRES 9 B 134 THR ALA GLU VAL ASP VAL ILE SER ALA ALA ALA LEU SER SEQRES 10 B 134 GLU GLN GLN LEU ALA LYS ILE SER ALA ALA MET GLU LYS SEQRES 11 B 134 ARG LEU SER ARG HELIX 1 1 ASN A 4 GLU A 7 5 4 HELIX 2 2 ILE A 8 PHE A 19 1 12 HELIX 3 3 PHE B 3 THR B 5 5 3 HELIX 4 4 VAL B 6 HIS B 21 1 16 HELIX 5 5 SER B 23 LYS B 39 1 17 HELIX 6 6 ASN B 40 SER B 48 1 9 HELIX 7 7 ALA B 52 CYS B 64 1 13 HELIX 8 8 ASP B 69 ASN B 82 1 14 HELIX 9 9 ALA B 87 GLU B 103 1 17 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000