HEADER OXIDOREDUCTASE 11-JUL-05 2A94 TITLE STRUCTURE OF PLASMODIUM FALCIPARUM LACTATE DEHYDROGENASE COMPLEXED TO TITLE 2 APADH. COMPND MOL_ID: 1; COMPND 2 MOLECULE: L-LACTATE DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: LDH-P; COMPND 5 EC: 1.1.1.27; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_COMMON: MALARIA PARASITE P. FALCIPARUM; SOURCE 4 ORGANISM_TAXID: 5833; SOURCE 5 GENE: LDH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: DH5ALPHA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PKK223-3 KEYWDS ROSSMANN FOLD, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.CHAIKUAD,V.FAIRWEATHER,R.CONNERS,T.JOSEPH-HORNE,D.TURGUT-BALIK, AUTHOR 2 R.L.BRADY REVDAT 6 20-SEP-23 2A94 1 COMPND FORMUL REVDAT 5 23-AUG-23 2A94 1 REMARK SEQADV REVDAT 4 11-OCT-17 2A94 1 REMARK REVDAT 3 13-JUL-11 2A94 1 VERSN REVDAT 2 24-FEB-09 2A94 1 VERSN REVDAT 1 10-JAN-06 2A94 0 JRNL AUTH A.CHAIKUAD,V.FAIRWEATHER,R.CONNERS,T.JOSEPH-HORNE, JRNL AUTH 2 D.TURGUT-BALIK,R.L.BRADY JRNL TITL STRUCTURE OF LACTATE DEHYDROGENASE FROM PLASMODIUM VIVAX: JRNL TITL 2 COMPLEXES WITH NADH AND APADH. JRNL REF BIOCHEMISTRY V. 44 16221 2005 JRNL REFN ISSN 0006-2960 JRNL PMID 16331982 JRNL DOI 10.1021/BI051416Y REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 3 NUMBER OF REFLECTIONS : 48267 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.176 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2452 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3217 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.50 REMARK 3 BIN R VALUE (WORKING SET) : 0.1700 REMARK 3 BIN FREE R VALUE SET COUNT : 154 REMARK 3 BIN FREE R VALUE : 0.2110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2383 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 214 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 10.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.90000 REMARK 3 B22 (A**2) : 1.08000 REMARK 3 B33 (A**2) : -0.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.066 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.064 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.055 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.473 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2342 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2202 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3180 ; 1.533 ; 1.994 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5141 ; 1.543 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 298 ; 4.068 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 427 ;14.579 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 386 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2534 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 392 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 500 ; 0.225 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2069 ; 0.190 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 3 ; 0.582 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 179 ; 0.112 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 19 ; 0.198 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 64 ; 0.207 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 22 ; 0.332 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1484 ; 0.714 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2398 ; 1.362 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 858 ; 2.260 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 782 ; 3.741 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2A94 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-AUG-05. REMARK 100 THE DEPOSITION ID IS D_1000033640. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUN-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50501 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.03100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 37.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.62 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.13300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1T2C REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MPD, PH 7.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 40.09150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.10400 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 45.41300 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 40.09150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.10400 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 45.41300 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 40.09150 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 43.10400 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 45.41300 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 40.09150 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 43.10400 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 45.41300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS A TETRAMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 19990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -128.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 80.18300 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 86.20800 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 80.18300 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 86.20800 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 330 REMARK 465 HIS A 331 REMARK 465 HIS A 332 REMARK 465 HIS A 333 REMARK 465 HIS A 334 REMARK 465 HIS A 335 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 THR A 101 REMARK 475 LYS A 102 REMARK 475 ALA A 103A REMARK 475 PRO A 103B REMARK 475 GLY A 103C REMARK 475 LYS A 103D REMARK 475 SER A 103E REMARK 475 ASP A 105A REMARK 475 LYS A 105B REMARK 475 GLU A 106 REMARK 475 TRP A 107 REMARK 475 ASN A 108 REMARK 475 ARG A 109 REMARK 475 ASP A 110 REMARK 475 ASP A 111 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 546 O HOH A 546 4565 1.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP A 111 C LEU A 112 N 0.139 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 92 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 PHE A 100 O - C - N ANGL. DEV. = -14.4 DEGREES REMARK 500 ASP A 111 O - C - N ANGL. DEV. = -13.5 DEGREES REMARK 500 ASP A 283 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 57 -46.38 75.14 REMARK 500 PRO A 103B 95.31 -64.65 REMARK 500 GLU A 106 56.48 -108.34 REMARK 500 ASN A 108 -144.78 -147.13 REMARK 500 ASP A 110 -60.58 -139.35 REMARK 500 CYS A 131 60.35 -151.08 REMARK 500 TYR A 247 -24.08 -143.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 PHE A 100 -15.05 REMARK 500 ASP A 111 10.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AP0 A 336 DBREF 2A94 A 18 332 UNP Q27743 LDH1_PLAFD 2 316 SEQADV 2A94 HIS A 330 UNP Q27743 EXPRESSION TAG SEQADV 2A94 HIS A 331 UNP Q27743 EXPRESSION TAG SEQADV 2A94 HIS A 332 UNP Q27743 EXPRESSION TAG SEQADV 2A94 HIS A 333 UNP Q27743 EXPRESSION TAG SEQADV 2A94 HIS A 334 UNP Q27743 EXPRESSION TAG SEQADV 2A94 HIS A 335 UNP Q27743 EXPRESSION TAG SEQRES 1 A 321 ALA PRO LYS ALA LYS ILE VAL LEU VAL GLY SER GLY MET SEQRES 2 A 321 ILE GLY GLY VAL MET ALA THR LEU ILE VAL GLN LYS ASN SEQRES 3 A 321 LEU GLY ASP VAL VAL LEU PHE ASP ILE VAL LYS ASN MET SEQRES 4 A 321 PRO HIS GLY LYS ALA LEU ASP THR SER HIS THR ASN VAL SEQRES 5 A 321 MET ALA TYR SER ASN CYS LYS VAL SER GLY SER ASN THR SEQRES 6 A 321 TYR ASP ASP LEU ALA GLY ALA ASP VAL VAL ILE VAL THR SEQRES 7 A 321 ALA GLY PHE THR LYS ALA PRO GLY LYS SER ASP LYS GLU SEQRES 8 A 321 TRP ASN ARG ASP ASP LEU LEU PRO LEU ASN ASN LYS ILE SEQRES 9 A 321 MET ILE GLU ILE GLY GLY HIS ILE LYS LYS ASN CYS PRO SEQRES 10 A 321 ASN ALA PHE ILE ILE VAL VAL THR ASN PRO VAL ASP VAL SEQRES 11 A 321 MET VAL GLN LEU LEU HIS GLN HIS SER GLY VAL PRO LYS SEQRES 12 A 321 ASN LYS ILE ILE GLY LEU GLY GLY VAL LEU ASP THR SER SEQRES 13 A 321 ARG LEU LYS TYR TYR ILE SER GLN LYS LEU ASN VAL CYS SEQRES 14 A 321 PRO ARG ASP VAL ASN ALA HIS ILE VAL GLY ALA HIS GLY SEQRES 15 A 321 ASN LYS MET VAL LEU LEU LYS ARG TYR ILE THR VAL GLY SEQRES 16 A 321 GLY ILE PRO LEU GLN GLU PHE ILE ASN ASN LYS LEU ILE SEQRES 17 A 321 SER ASP ALA GLU LEU GLU ALA ILE PHE ASP ARG THR VAL SEQRES 18 A 321 ASN THR ALA LEU GLU ILE VAL ASN LEU HIS ALA SER PRO SEQRES 19 A 321 TYR VAL ALA PRO ALA ALA ALA ILE ILE GLU MET ALA GLU SEQRES 20 A 321 SER TYR LEU LYS ASP LEU LYS LYS VAL LEU ILE CYS SER SEQRES 21 A 321 THR LEU LEU GLU GLY GLN TYR GLY HIS SER ASP ILE PHE SEQRES 22 A 321 GLY GLY THR PRO VAL VAL LEU GLY ALA ASN GLY VAL GLU SEQRES 23 A 321 GLN VAL ILE GLU LEU GLN LEU ASN SER GLU GLU LYS ALA SEQRES 24 A 321 LYS PHE ASP GLU ALA ILE ALA GLU THR LYS ARG MET LYS SEQRES 25 A 321 ALA LEU ALA HIS HIS HIS HIS HIS HIS HET AP0 A 336 44 HETNAM AP0 ACETYL PYRIDINE ADENINE DINUCLEOTIDE, REDUCED FORMUL 2 AP0 C22 H30 N6 O14 P2 FORMUL 3 HOH *214(H2 O) HELIX 1 1 GLY A 29 LYS A 43 1 14 HELIX 2 2 ASN A 57 HIS A 68 1 12 HELIX 3 3 HIS A 68 TYR A 73B 1 7 HELIX 4 4 THR A 84 ALA A 89 5 6 HELIX 5 5 LEU A 112 CYS A 131 1 20 HELIX 6 6 PRO A 141 GLY A 154 1 14 HELIX 7 7 PRO A 156 ASN A 158 5 3 HELIX 8 8 GLY A 164 ASN A 181 1 18 HELIX 9 9 CYS A 183 ARG A 185 5 3 HELIX 10 10 LYS A 203 TYR A 205 5 3 HELIX 11 11 LEU A 210A ASN A 215 1 7 HELIX 12 12 SER A 220 ASN A 234 1 14 HELIX 13 13 ASN A 234 LEU A 242 1 9 HELIX 14 14 TYR A 247 LYS A 263 1 17 HELIX 15 15 GLN A 278 GLY A 280 5 3 HELIX 16 16 ASN A 308 ALA A 329 1 22 SHEET 1 A 6 VAL A 78 SER A 81 0 SHEET 2 A 6 ASP A 47 PHE A 52 1 N LEU A 51 O SER A 79 SHEET 3 A 6 LYS A 22 VAL A 26 1 N LEU A 25 O VAL A 50 SHEET 4 A 6 VAL A 93 VAL A 96 1 O VAL A 93 N VAL A 24 SHEET 5 A 6 PHE A 134 VAL A 137 1 O ILE A 136 N VAL A 96 SHEET 6 A 6 ILE A 160 GLY A 162 1 O ILE A 161 N VAL A 137 SHEET 1 B 3 VAL A 187 ASN A 188 0 SHEET 2 B 3 THR A 207 VAL A 208 -1 O THR A 207 N ASN A 188 SHEET 3 B 3 ILE A 209C PRO A 209D-1 O ILE A 209C N VAL A 208 SHEET 1 C 2 ILE A 191 VAL A 192 0 SHEET 2 C 2 VAL A 200 LEU A 201 -1 O VAL A 200 N VAL A 192 SHEET 1 D 3 LYS A 267 GLU A 276 0 SHEET 2 D 3 SER A 282 GLY A 294 -1 O ILE A 285 N LEU A 275 SHEET 3 D 3 GLY A 297 VAL A 302 -1 O GLU A 299 N VAL A 292 CISPEP 1 ASN A 140 PRO A 141 0 -4.44 SITE 1 AC1 31 GLY A 27 GLY A 29 MET A 30 ILE A 31 SITE 2 AC1 31 PHE A 52 ASP A 53 ILE A 54 VAL A 55 SITE 3 AC1 31 TYR A 85 THR A 97 ALA A 98 GLY A 99 SITE 4 AC1 31 PHE A 100 VAL A 138 THR A 139 ASN A 140 SITE 5 AC1 31 VAL A 142 LEU A 163 LEU A 167 HIS A 195 SITE 6 AC1 31 HOH A 339 HOH A 340 HOH A 341 HOH A 342 SITE 7 AC1 31 HOH A 343 HOH A 377 HOH A 436 HOH A 444 SITE 8 AC1 31 HOH A 464 HOH A 473 HOH A 538 CRYST1 80.183 86.208 90.826 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012471 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011600 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011010 0.00000