HEADER PROTEIN BINDING 21-JUL-05 2ADZ TITLE SOLUTION STRUCTURE OF THE JOINED PH DOMAIN OF ALPHA1-SYNTROPHIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-1-SYNTROPHIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PH DOMAIN; COMPND 5 SYNONYM: ALPHA-SYNTROPHIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET32A(A MODIFIED VERSION) KEYWDS PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.YAN,W.WEN,W.XU,J.F.LONG,M.E.ADAMS,S.C.FROEHNER,M.ZHANG REVDAT 4 29-MAY-24 2ADZ 1 REMARK REVDAT 3 09-MAR-22 2ADZ 1 REMARK REVDAT 2 24-FEB-09 2ADZ 1 VERSN REVDAT 1 24-JAN-06 2ADZ 0 JRNL AUTH J.YAN,W.WEN,W.XU,J.F.LONG,M.E.ADAMS,S.C.FROEHNER,M.ZHANG JRNL TITL STRUCTURE OF THE SPLIT PH DOMAIN AND DISTINCT LIPID-BINDING JRNL TITL 2 PROPERTIES OF THE PH-PDZ SUPRAMODULE OF ALPHA-SYNTROPHIN JRNL REF EMBO J. V. 24 3985 2005 JRNL REFN ISSN 0261-4189 JRNL PMID 16252003 JRNL DOI 10.1038/SJ.EMBOJ.7600858 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL OF REMARK 3 1940 RESTRAINTS, 1776 ARE NOE-DERIVED DISTANCE CONSTRAINTS, 84 REMARK 3 DIHEDRAL ANGLE RESTRAINTS,80 DISTANCE RESTRAINTS FROM HYDROGEN REMARK 3 BONDS. REMARK 4 REMARK 4 2ADZ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-JUL-05. REMARK 100 THE DEPOSITION ID IS D_1000033780. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM PROTEIN 15N; 100MM POTASSIUM REMARK 210 PHOSPHATE PH 7.0; 1MM PROTEIN REMARK 210 15N, 13C; 100MM POTASSIUM REMARK 210 PHOSPHATE PH 7.0; 1MM UNLABELLED REMARK 210 PROTEIN; 100MM POTASSIUM REMARK 210 PHOSPHATE PH 7.0 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY; 2D NOESY; 2D REMARK 210 TOCSY; HCCH_TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H LEU A 31 O SER A 42 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 78.53 -153.58 REMARK 500 1 ARG A 5 90.72 -65.46 REMARK 500 1 CYS A 16 41.66 -169.63 REMARK 500 1 SER A 20 -68.46 -169.93 REMARK 500 1 ALA A 22 30.58 -151.25 REMARK 500 1 TRP A 27 168.77 -48.98 REMARK 500 1 SER A 33 88.90 -69.95 REMARK 500 1 ASP A 37 38.14 -152.87 REMARK 500 1 ALA A 38 119.92 -175.20 REMARK 500 1 ASN A 58 -63.11 -108.81 REMARK 500 1 PRO A 71 -166.32 -66.53 REMARK 500 1 GLU A 72 72.58 67.21 REMARK 500 1 ALA A 73 -43.34 168.89 REMARK 500 1 GLN A 77 55.25 -95.16 REMARK 500 1 GLU A 79 39.95 -96.99 REMARK 500 1 VAL A 80 -44.76 -133.94 REMARK 500 1 TYR A 83 -168.92 55.07 REMARK 500 1 LYS A 85 -63.72 71.12 REMARK 500 1 ASN A 86 35.18 -95.91 REMARK 500 1 THR A 91 -47.37 -136.59 REMARK 500 1 PRO A 98 108.19 -57.92 REMARK 500 1 SER A 101 61.38 -166.95 REMARK 500 1 GLN A 104 116.67 -161.52 REMARK 500 1 SER A 109 -61.53 -179.50 REMARK 500 1 PRO A 110 -167.17 -71.65 REMARK 500 1 PRO A 112 -160.73 -57.71 REMARK 500 1 PRO A 114 92.56 -52.36 REMARK 500 1 ASN A 116 -56.58 -166.07 REMARK 500 1 SER A 118 -80.99 62.61 REMARK 500 1 ALA A 120 179.61 -58.99 REMARK 500 1 MET A 127 -36.29 179.30 REMARK 500 1 ALA A 128 -176.66 -53.85 REMARK 500 1 ASP A 138 73.82 59.99 REMARK 500 1 GLU A 140 -63.06 -174.88 REMARK 500 1 ALA A 149 30.40 -95.14 REMARK 500 1 ALA A 159 172.35 -54.92 REMARK 500 2 LEU A 11 103.99 -59.03 REMARK 500 2 ARG A 15 -178.07 -69.54 REMARK 500 2 CYS A 16 103.77 -174.16 REMARK 500 2 ALA A 18 154.45 61.77 REMARK 500 2 SER A 20 -67.54 -93.75 REMARK 500 2 GLU A 25 95.63 -60.23 REMARK 500 2 TRP A 27 95.57 -59.42 REMARK 500 2 PRO A 43 44.43 -75.24 REMARK 500 2 GLU A 53 89.82 -153.02 REMARK 500 2 PRO A 54 -172.91 -53.35 REMARK 500 2 GLN A 56 105.54 59.50 REMARK 500 2 PRO A 71 -168.60 -67.71 REMARK 500 2 GLU A 72 72.07 66.09 REMARK 500 2 ALA A 73 -47.19 170.64 REMARK 500 REMARK 500 THIS ENTRY HAS 733 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1Z87 RELATED DB: PDB REMARK 900 THE ISOLATED PH DOMAIN OF THE PROTEIN DBREF 2ADZ A 1 78 UNP Q61234 SNTA1_MOUSE 2 79 DBREF 2ADZ A 79 178 UNP Q61234 SNTA1_MOUSE 165 264 SEQRES 1 A 178 ALA SER GLY ARG ARG ALA PRO ARG THR GLY LEU LEU GLU SEQRES 2 A 178 LEU ARG CYS GLY ALA GLY SER GLY ALA GLY GLY GLU ARG SEQRES 3 A 178 TRP GLN ARG VAL LEU LEU SER LEU ALA GLU ASP ALA LEU SEQRES 4 A 178 THR VAL SER PRO ALA ASP GLY GLU PRO GLY PRO GLU PRO SEQRES 5 A 178 GLU PRO ALA GLN LEU ASN GLY ALA ALA GLU PRO GLY ALA SEQRES 6 A 178 ALA PRO PRO GLN LEU PRO GLU ALA LEU LEU LEU GLN ARG SEQRES 7 A 178 GLU VAL SER PRO TYR PHE LYS ASN SER ALA GLY GLY THR SEQRES 8 A 178 SER VAL GLY TRP ASP SER PRO PRO ALA SER PRO LEU GLN SEQRES 9 A 178 ARG GLN PRO SER SER PRO GLY PRO GLN PRO ARG ASN LEU SEQRES 10 A 178 SER GLU ALA LYS HIS VAL SER LEU LYS MET ALA TYR VAL SEQRES 11 A 178 SER ARG ARG CYS THR PRO THR ASP PRO GLU PRO ARG TYR SEQRES 12 A 178 LEU GLU ILE CYS ALA ALA ASP GLY GLN ASP ALA VAL PHE SEQRES 13 A 178 LEU ARG ALA LYS ASP GLU ALA SER ALA ARG SER TRP ALA SEQRES 14 A 178 GLY ALA ILE GLN ALA GLN ILE GLY THR HELIX 1 1 LEU A 74 VAL A 80 5 7 HELIX 2 2 ASP A 161 THR A 178 1 18 SHEET 1 A 4 ARG A 8 LEU A 14 0 SHEET 2 A 4 GLN A 28 ALA A 35 -1 O GLN A 28 N LEU A 14 SHEET 3 A 4 ALA A 38 SER A 42 -1 O THR A 40 N SER A 33 SHEET 4 A 4 LYS A 121 VAL A 123 -1 O VAL A 123 N LEU A 39 SHEET 1 B 3 TYR A 129 ARG A 133 0 SHEET 2 B 3 TYR A 143 ALA A 148 -1 O TYR A 143 N ARG A 133 SHEET 3 B 3 ASP A 153 ARG A 158 -1 O LEU A 157 N LEU A 144 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1