HEADER PROTEIN TRANSPORT 22-JUL-05 2AED OBSLTE 29-FEB-12 2AED 4DRZ TITLE CRYSTAL STRUCTURE OF HUMAN RAB14 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAS-RELATED PROTEIN RAB-14; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RAB14; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RAB14; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: P28A-LIC KEYWDS RAS, GTPASE, GTP, ONCOGENE, RAB14, STRUCTURAL GENOMICS, STRUCTURAL KEYWDS 2 GENOMICS CONSORTIUM, SGC, PROTEIN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR J.WANG,W.TEMPEL,C.ARROWSMITH,A.EDWARDS,M.SUNDSTROM,J.WEIGELT, AUTHOR 2 A.BOCHKAREV,H.PARK,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 4 29-FEB-12 2AED 1 OBSLTE REVDAT 3 13-JUL-11 2AED 1 VERSN REVDAT 2 24-FEB-09 2AED 1 VERSN REVDAT 1 02-AUG-05 2AED 0 JRNL AUTH J.WANG,W.TEMPEL,C.ARROWSMITH,A.EDWARDS,M.SUNDSTROM, JRNL AUTH 2 J.WEIGELT,A.BOCHKAREV,H.PARK, JRNL AUTH 3 STRUCTURAL GENOMICS CONSORTIUM (SGC) JRNL TITL CRYSTAL STRUCTURE OF HUMAN RAB14 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 6222 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 312 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 407 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.24 REMARK 3 BIN R VALUE (WORKING SET) : 0.1750 REMARK 3 BIN FREE R VALUE SET COUNT : 20 REMARK 3 BIN FREE R VALUE : 0.2480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1186 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 42 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.48000 REMARK 3 B22 (A**2) : -2.80000 REMARK 3 B33 (A**2) : 3.77000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.23000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.430 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.283 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.180 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.389 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.891 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1235 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1094 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1677 ; 1.365 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2519 ; 0.770 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 150 ; 5.985 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 56 ;37.545 ;24.464 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 198 ;14.959 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;19.564 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 190 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1365 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 259 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 238 ; 0.190 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1113 ; 0.186 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 593 ; 0.182 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 704 ; 0.084 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 57 ; 0.162 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 8 ; 0.088 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 46 ; 0.164 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 13 ; 0.170 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 780 ; 2.108 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 318 ; 0.582 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1196 ; 3.055 ; 3.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 552 ; 1.891 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 481 ; 2.740 ; 3.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 8 A 175 REMARK 3 ORIGIN FOR THE GROUP (A): 10.6120 -0.3420 7.8080 REMARK 3 T TENSOR REMARK 3 T11: -0.0551 T22: -0.0144 REMARK 3 T33: -0.1070 T12: -0.0088 REMARK 3 T13: -0.0049 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 4.1099 L22: 0.9287 REMARK 3 L33: 1.0146 L12: -0.1626 REMARK 3 L13: -0.1516 L23: -0.1773 REMARK 3 S TENSOR REMARK 3 S11: 0.0665 S12: -0.3617 S13: -0.0891 REMARK 3 S21: 0.0334 S22: -0.0451 S23: -0.1424 REMARK 3 S31: 0.0669 S32: 0.0802 S33: -0.0214 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2AED COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 42 REMARK 42 MOLPROBITY STRUCTURE VALIDATION REMARK 42 PROGRAMS : MOLPROBITY (KING, REDUCE, AND PROBE) REMARK 42 AUTHORS : I.W.DAVIS,J.M.WORD REMARK 42 URL : HTTP://KINEMAGE.BIOCHEM.DUKE.EDU/MOLPROBITY/ REMARK 42 AUTHORS : J.S.RICHARDSON,W.B.ARENDALL,D.C.RICHARDSON REMARK 42 REFERENCE : NEW TOOLS AND DATA FOR IMPROVING REMARK 42 : STRUCTURES, USING ALL-ATOM CONTACTS REMARK 42 : METHODS IN ENZYMOLOGY. 2003;374:385-412. REMARK 42 MOLPROBITY OUTPUT SCORES: REMARK 42 ALL-ATOM CLASHSCORE : 3.81 (3.67 B<40) REMARK 42 BAD ROTAMERS : 4.3% 5/117 (TARGET 0-1%) REMARK 42 RAMACHANDRAN OUTLIERS : 0.0% 0/147 (TARGET 0.2%) REMARK 42 RAMACHANDRAN FAVORED : 99.3% 146/147 (TARGET 98.0%) REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUL-05. REMARK 100 THE RCSB ID CODE IS RCSB033792. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUN-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97901 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SBC-3 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6885 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.13400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.40300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1OIV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG-3350, 0.2M CALCIUM ACETATE, PH REMARK 280 7.2, HANGING DROP, TEMPERATURE 291K, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 20.24350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -18 REMARK 465 GLY A -17 REMARK 465 SER A -16 REMARK 465 SER A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 SER A -8 REMARK 465 SER A -7 REMARK 465 GLY A -6 REMARK 465 LEU A -5 REMARK 465 VAL A -4 REMARK 465 PRO A -3 REMARK 465 ARG A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 THR A 3 REMARK 465 ALA A 4 REMARK 465 PRO A 5 REMARK 465 TYR A 6 REMARK 465 ASN A 7 REMARK 465 LYS A 35 REMARK 465 PHE A 36 REMARK 465 MET A 37 REMARK 465 ALA A 38 REMARK 465 ASP A 39 REMARK 465 CYS A 40 REMARK 465 PRO A 41 REMARK 465 HIS A 42 REMARK 465 ALA A 68 REMARK 465 GLY A 69 REMARK 465 GLN A 70 REMARK 465 GLY A 71 REMARK 465 ARG A 72 REMARK 465 PHE A 73 REMARK 465 ARG A 74 REMARK 465 ILE A 176 REMARK 465 GLN A 177 REMARK 465 ASP A 178 REMARK 465 GLY A 179 REMARK 465 SER A 180 REMARK 465 LEU A 181 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 34 CB CG CD CE NZ REMARK 470 VAL A 55 CG1 CG2 REMARK 470 LYS A 61 NZ REMARK 470 ARG A 78 CB CG CD NE CZ NH1 NH2 REMARK 470 ILE A 93 CD1 REMARK 470 LYS A 140 CE NZ REMARK 470 GLN A 141 CD OE1 NE2 REMARK 470 LYS A 156 CE NZ REMARK 470 GLU A 159 CG CD OE1 OE2 REMARK 470 LYS A 170 CE NZ REMARK 470 LYS A 171 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 26 CB CYS A 26 SG -0.099 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 113 -138.26 -111.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GDP A 202 O1B REMARK 620 2 ASP A 66 OD2 99.9 REMARK 620 3 HOH A 338 O 159.8 95.2 REMARK 620 4 SER A 25 OG 91.8 81.2 77.3 REMARK 620 5 HOH A 322 O 84.8 149.1 75.4 68.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 202 DBREF 2AED A 1 181 UNP P61106 RAB14_HUMAN 1 181 SEQADV 2AED MET A -18 UNP P61106 EXPRESSION TAG SEQADV 2AED GLY A -17 UNP P61106 EXPRESSION TAG SEQADV 2AED SER A -16 UNP P61106 EXPRESSION TAG SEQADV 2AED SER A -15 UNP P61106 EXPRESSION TAG SEQADV 2AED HIS A -14 UNP P61106 EXPRESSION TAG SEQADV 2AED HIS A -13 UNP P61106 EXPRESSION TAG SEQADV 2AED HIS A -12 UNP P61106 EXPRESSION TAG SEQADV 2AED HIS A -11 UNP P61106 EXPRESSION TAG SEQADV 2AED HIS A -10 UNP P61106 EXPRESSION TAG SEQADV 2AED HIS A -9 UNP P61106 EXPRESSION TAG SEQADV 2AED SER A -8 UNP P61106 EXPRESSION TAG SEQADV 2AED SER A -7 UNP P61106 EXPRESSION TAG SEQADV 2AED GLY A -6 UNP P61106 EXPRESSION TAG SEQADV 2AED LEU A -5 UNP P61106 EXPRESSION TAG SEQADV 2AED VAL A -4 UNP P61106 EXPRESSION TAG SEQADV 2AED PRO A -3 UNP P61106 EXPRESSION TAG SEQADV 2AED ARG A -2 UNP P61106 EXPRESSION TAG SEQADV 2AED GLY A -1 UNP P61106 EXPRESSION TAG SEQADV 2AED SER A 0 UNP P61106 EXPRESSION TAG SEQADV 2AED GLY A 71 UNP P61106 GLU 71 ENGINEERED MUTATION SEQRES 1 A 200 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 200 LEU VAL PRO ARG GLY SER MET ALA THR ALA PRO TYR ASN SEQRES 3 A 200 TYR SER TYR ILE PHE LYS TYR ILE ILE ILE GLY ASP MET SEQRES 4 A 200 GLY VAL GLY LYS SER CYS LEU LEU HIS GLN PHE THR GLU SEQRES 5 A 200 LYS LYS PHE MET ALA ASP CYS PRO HIS THR ILE GLY VAL SEQRES 6 A 200 GLU PHE GLY THR ARG ILE ILE GLU VAL SER GLY GLN LYS SEQRES 7 A 200 ILE LYS LEU GLN ILE TRP ASP THR ALA GLY GLN GLY ARG SEQRES 8 A 200 PHE ARG ALA VAL THR ARG SER TYR TYR ARG GLY ALA ALA SEQRES 9 A 200 GLY ALA LEU MET VAL TYR ASP ILE THR ARG ARG SER THR SEQRES 10 A 200 TYR ASN HIS LEU SER SER TRP LEU THR ASP ALA ARG ASN SEQRES 11 A 200 LEU THR ASN PRO ASN THR VAL ILE ILE LEU ILE GLY ASN SEQRES 12 A 200 LYS ALA ASP LEU GLU ALA GLN ARG ASP VAL THR TYR GLU SEQRES 13 A 200 GLU ALA LYS GLN PHE ALA GLU GLU ASN GLY LEU LEU PHE SEQRES 14 A 200 LEU GLU ALA SER ALA LYS THR GLY GLU ASN VAL GLU ASP SEQRES 15 A 200 ALA PHE LEU GLU ALA ALA LYS LYS ILE TYR GLN ASN ILE SEQRES 16 A 200 GLN ASP GLY SER LEU HET MG A 201 1 HET GDP A 202 28 HET UNX A 203 1 HET UNX A 204 1 HETNAM MG MAGNESIUM ION HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM UNX UNKNOWN ATOM OR ION FORMUL 2 MG MG 2+ FORMUL 3 GDP C10 H15 N5 O11 P2 FORMUL 4 UNX 2(X) FORMUL 6 HOH *42(H2 O) HELIX 1 1 GLY A 23 LYS A 34 1 12 HELIX 2 2 ALA A 75 GLY A 83 1 9 HELIX 3 3 ARG A 95 HIS A 101 1 7 HELIX 4 4 HIS A 101 LEU A 112 1 12 HELIX 5 5 LEU A 128 ARG A 132 5 5 HELIX 6 6 THR A 135 ASN A 146 1 12 HELIX 7 7 ASN A 160 GLN A 174 1 15 SHEET 1 A 6 PHE A 48 VAL A 55 0 SHEET 2 A 6 GLN A 58 ASP A 66 -1 O ILE A 64 N GLY A 49 SHEET 3 A 6 TYR A 10 GLY A 18 1 N TYR A 14 O GLN A 63 SHEET 4 A 6 ALA A 84 ASP A 92 1 O VAL A 90 N ILE A 17 SHEET 5 A 6 VAL A 118 ASN A 124 1 O ILE A 122 N MET A 89 SHEET 6 A 6 LEU A 149 GLU A 152 1 O LEU A 149 N LEU A 121 LINK MG MG A 201 O1B GDP A 202 1555 1555 2.23 LINK OD2 ASP A 66 MG MG A 201 1555 1555 2.31 LINK MG MG A 201 O HOH A 338 1555 1555 2.32 LINK OG SER A 25 MG MG A 201 1555 1555 2.36 LINK MG MG A 201 O HOH A 322 1555 1555 2.54 SITE 1 AC1 5 SER A 25 ASP A 66 GDP A 202 HOH A 322 SITE 2 AC1 5 HOH A 338 SITE 1 AC2 19 GLY A 21 VAL A 22 GLY A 23 LYS A 24 SITE 2 AC2 19 SER A 25 CYS A 26 ASP A 66 ASN A 124 SITE 3 AC2 19 LYS A 125 ASP A 127 LEU A 128 SER A 154 SITE 4 AC2 19 ALA A 155 LYS A 156 MG A 201 HOH A 314 SITE 5 AC2 19 HOH A 316 HOH A 322 HOH A 326 CRYST1 42.686 40.487 46.486 90.00 108.95 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023427 0.000000 0.008044 0.00000 SCALE2 0.000000 0.024699 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022745 0.00000