HEADER TRANSFERASE 25-JUL-05 2AF3 TITLE PHOSPHOTRANSACETYLASE FROM METHANOSARCINA THERMOPHILA SOAKED WITH TITLE 2 COENZYME A COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHATE ACETYLTRANSFERASE; COMPND 3 CHAIN: C, D; COMPND 4 SYNONYM: PHOSPHOTRANSACETYLASE; COMPND 5 EC: 2.3.1.8; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOSARCINA THERMOPHILA; SOURCE 3 ORGANISM_TAXID: 2210; SOURCE 4 GENE: PTA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PT7-7 KEYWDS PTA DIMER SOAKED WITH COENZYME A, ACYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.H.LAWRENCE,K.B.LUTHER,J.G.FERRY,H.SCHINDELIN REVDAT 4 23-AUG-23 2AF3 1 REMARK REVDAT 3 11-OCT-17 2AF3 1 REMARK REVDAT 2 24-FEB-09 2AF3 1 VERSN REVDAT 1 24-JAN-06 2AF3 0 JRNL AUTH S.H.LAWRENCE,K.B.LUTHER,H.SCHINDELIN,J.G.FERRY JRNL TITL STRUCTURAL AND FUNCTIONAL STUDIES SUGGEST A CATALYTIC JRNL TITL 2 MECHANISM FOR THE PHOSPHOTRANSACETYLASE FROM METHANOSARCINA JRNL TITL 3 THERMOPHILA. JRNL REF J.BACTERIOL. V. 188 1143 2006 JRNL REFN ISSN 0021-9193 JRNL PMID 16428418 JRNL DOI 10.1128/JB.188.3.1143-1154.2006 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.P.IYER,S.H.LAWRENCE,K.B.LUTHER,K.R.RAJASHANKAR, REMARK 1 AUTH 2 H.P.YENNAWAR,J.G.FERRY,H.SCHINDELIN REMARK 1 TITL CRYSTAL STRUCTURE OF PHOSPHOTRANSACETYLASE FROM THE REMARK 1 TITL 2 METHANOGENIC ARCHAEON METHANOSARCINA THERMOPHILA REMARK 1 REF STRUCTURE V. 12 559 2004 REMARK 1 REFN ISSN 0969-2126 REMARK 1 PMID 15062079 REMARK 1 DOI 10.1016/J.STR.2004.03.007 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 22784 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.290 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1215 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1700 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.3380 REMARK 3 BIN FREE R VALUE SET COUNT : 82 REMARK 3 BIN FREE R VALUE : 0.4700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4925 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 149 REMARK 3 SOLVENT ATOMS : 47 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 72.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.91000 REMARK 3 B22 (A**2) : 0.91000 REMARK 3 B33 (A**2) : -1.83000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.876 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.371 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.303 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 29.044 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.890 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5145 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6991 ; 1.610 ; 2.019 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 662 ; 7.558 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 180 ;41.394 ;26.111 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 886 ;19.308 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;18.980 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 828 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3681 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2682 ; 0.243 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3493 ; 0.315 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 194 ; 0.182 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 74 ; 0.258 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 11 ; 0.439 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3382 ; 0.530 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5302 ; 0.931 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1945 ; 1.572 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1689 ; 2.473 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 2 C 138 REMARK 3 ORIGIN FOR THE GROUP (A): 33.7680 28.8256 -12.7277 REMARK 3 T TENSOR REMARK 3 T11: -0.2633 T22: -0.0809 REMARK 3 T33: -0.5523 T12: 0.0179 REMARK 3 T13: -0.0986 T23: -0.0489 REMARK 3 L TENSOR REMARK 3 L11: 4.1240 L22: 3.7255 REMARK 3 L33: 4.8179 L12: 0.6355 REMARK 3 L13: 0.0108 L23: 0.0802 REMARK 3 S TENSOR REMARK 3 S11: 0.0432 S12: 0.3284 S13: -0.3408 REMARK 3 S21: -0.0498 S22: -0.0953 S23: -0.2206 REMARK 3 S31: 0.5504 S32: 0.5115 S33: 0.0521 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 139 C 150 REMARK 3 ORIGIN FOR THE GROUP (A): 25.7125 35.0348 3.8637 REMARK 3 T TENSOR REMARK 3 T11: 0.2082 T22: -0.0163 REMARK 3 T33: -0.5534 T12: 0.0159 REMARK 3 T13: -0.1124 T23: 0.1078 REMARK 3 L TENSOR REMARK 3 L11: 21.4535 L22: 28.3246 REMARK 3 L33: 11.0614 L12: -4.6650 REMARK 3 L13: 3.5445 L23: 16.1436 REMARK 3 S TENSOR REMARK 3 S11: -1.2897 S12: -2.8853 S13: -0.9853 REMARK 3 S21: 2.3236 S22: 1.0555 S23: 1.4117 REMARK 3 S31: 2.4489 S32: 0.2263 S33: 0.2342 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 151 C 295 REMARK 3 ORIGIN FOR THE GROUP (A): 28.0615 54.3053 6.4313 REMARK 3 T TENSOR REMARK 3 T11: -0.2830 T22: -0.3515 REMARK 3 T33: -0.2511 T12: -0.0336 REMARK 3 T13: -0.2972 T23: 0.0076 REMARK 3 L TENSOR REMARK 3 L11: 4.1969 L22: 5.3619 REMARK 3 L33: 3.0681 L12: -1.1235 REMARK 3 L13: 0.5990 L23: -0.9404 REMARK 3 S TENSOR REMARK 3 S11: -0.4608 S12: -0.0939 S13: 0.8500 REMARK 3 S21: 0.3225 S22: 0.3528 S23: 0.0978 REMARK 3 S31: -0.2402 S32: 0.1370 S33: 0.1080 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 296 C 333 REMARK 3 ORIGIN FOR THE GROUP (A): 35.4466 38.8393 -7.2550 REMARK 3 T TENSOR REMARK 3 T11: -0.3438 T22: -0.1271 REMARK 3 T33: -0.4691 T12: -0.0341 REMARK 3 T13: -0.1126 T23: 0.0183 REMARK 3 L TENSOR REMARK 3 L11: 2.1540 L22: 4.6683 REMARK 3 L33: 8.4010 L12: 2.5507 REMARK 3 L13: -0.9336 L23: 0.3122 REMARK 3 S TENSOR REMARK 3 S11: 0.0518 S12: 0.3088 S13: 0.0684 REMARK 3 S21: 0.0450 S22: -0.2751 S23: -0.5461 REMARK 3 S31: -0.1301 S32: 0.8285 S33: 0.2233 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 2 D 138 REMARK 3 ORIGIN FOR THE GROUP (A): 9.7523 87.9956 14.2414 REMARK 3 T TENSOR REMARK 3 T11: 0.4254 T22: 0.6601 REMARK 3 T33: 0.8304 T12: -0.0728 REMARK 3 T13: -0.3906 T23: -0.0738 REMARK 3 L TENSOR REMARK 3 L11: 3.8876 L22: 5.7202 REMARK 3 L33: 8.2648 L12: -2.1343 REMARK 3 L13: -2.0495 L23: 2.2588 REMARK 3 S TENSOR REMARK 3 S11: -0.0730 S12: -1.7940 S13: 0.5154 REMARK 3 S21: 0.8529 S22: 0.1181 S23: 0.1885 REMARK 3 S31: -0.7495 S32: 0.3401 S33: -0.0451 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 139 D 150 REMARK 3 ORIGIN FOR THE GROUP (A): 1.3586 74.6540 3.0233 REMARK 3 T TENSOR REMARK 3 T11: 0.4485 T22: 0.2458 REMARK 3 T33: 0.8328 T12: 0.0528 REMARK 3 T13: -0.1149 T23: -0.0377 REMARK 3 L TENSOR REMARK 3 L11: 14.4401 L22: 6.8150 REMARK 3 L33: 8.1739 L12: -1.4598 REMARK 3 L13: -1.5327 L23: 7.4635 REMARK 3 S TENSOR REMARK 3 S11: -0.7997 S12: -0.9315 S13: 1.4691 REMARK 3 S21: 1.1869 S22: -0.5622 S23: 0.4606 REMARK 3 S31: -1.4106 S32: -1.6451 S33: 1.3619 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 151 D 295 REMARK 3 ORIGIN FOR THE GROUP (A): 14.8739 65.0043 -7.6890 REMARK 3 T TENSOR REMARK 3 T11: -0.1794 T22: -0.1921 REMARK 3 T33: 0.1143 T12: -0.1268 REMARK 3 T13: -0.3973 T23: 0.2534 REMARK 3 L TENSOR REMARK 3 L11: 4.0307 L22: 7.3426 REMARK 3 L33: 2.9806 L12: -3.8036 REMARK 3 L13: 1.1230 L23: -1.2225 REMARK 3 S TENSOR REMARK 3 S11: -0.1755 S12: 0.5077 S13: 0.7046 REMARK 3 S21: -0.6771 S22: 0.0635 S23: 0.6136 REMARK 3 S31: -0.1801 S32: -0.2291 S33: 0.1120 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 296 D 333 REMARK 3 ORIGIN FOR THE GROUP (A): 13.8230 82.2729 4.2372 REMARK 3 T TENSOR REMARK 3 T11: 0.1248 T22: 0.0008 REMARK 3 T33: 0.7788 T12: -0.0145 REMARK 3 T13: -0.3975 T23: 0.1151 REMARK 3 L TENSOR REMARK 3 L11: 3.3873 L22: 11.7550 REMARK 3 L33: 9.3780 L12: 1.0428 REMARK 3 L13: -5.2464 L23: 2.1685 REMARK 3 S TENSOR REMARK 3 S11: -0.0282 S12: -0.4306 S13: 0.0612 REMARK 3 S21: 0.4154 S22: 0.2851 S23: -0.6211 REMARK 3 S31: -0.5845 S32: 0.8750 S33: -0.2569 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2AF3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-AUG-05. REMARK 100 THE DEPOSITION ID IS D_1000033818. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-MAY-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X26C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : DOUBLY FOCUSING TOROIDAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23999 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : 0.06600 REMARK 200 FOR THE DATA SET : 26.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.72500 REMARK 200 R SYM FOR SHELL (I) : 0.72500 REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1QZT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, SODIUM ACETATE, PH REMARK 280 5.4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y,Z REMARK 290 7555 -Y+1/2,X,Z+3/4 REMARK 290 8555 Y,-X+1/2,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 57.23450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 57.23450 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.91600 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 57.23450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 31.95800 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 57.23450 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 95.87400 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 57.23450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 57.23450 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 63.91600 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 57.23450 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 95.87400 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 57.23450 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 31.95800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C 1 REMARK 465 MET D 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER D 179 OE1 GLU D 181 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS C 143 CD LYS C 143 CE 0.210 REMARK 500 LYS C 143 CE LYS C 143 NZ 0.195 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR C 3 127.94 58.04 REMARK 500 PHE C 4 -48.72 -29.78 REMARK 500 LYS C 88 -51.00 -28.33 REMARK 500 LYS C 90 53.86 -114.97 REMARK 500 ALA C 125 12.78 -144.13 REMARK 500 ILE C 138 -63.99 -94.56 REMARK 500 LYS C 140 -164.08 56.56 REMARK 500 ALA C 146 -39.12 -29.25 REMARK 500 PRO C 157 -76.32 -49.44 REMARK 500 ASP C 158 57.40 -104.94 REMARK 500 MET C 174 -75.67 -136.31 REMARK 500 GLN C 199 55.71 75.06 REMARK 500 THR C 211 -111.85 -100.38 REMARK 500 ASN C 268 -0.19 -145.24 REMARK 500 GLN C 331 -150.72 -73.66 REMARK 500 ASP C 332 155.94 120.22 REMARK 500 ALA D 42 -168.16 -169.81 REMARK 500 ILE D 53 -80.66 -50.84 REMARK 500 LEU D 56 -74.84 -70.92 REMARK 500 PRO D 70 -23.22 -38.81 REMARK 500 THR D 93 -150.10 -78.20 REMARK 500 SER D 122 -158.40 -161.14 REMARK 500 HIS D 126 -101.49 -113.43 REMARK 500 SER D 127 -164.84 -172.59 REMARK 500 LYS D 140 -166.19 58.90 REMARK 500 PRO D 157 -96.74 -50.13 REMARK 500 ASP D 164 50.96 70.94 REMARK 500 LYS D 212 62.70 25.34 REMARK 500 ALA D 258 75.38 -151.38 REMARK 500 VAL D 263 -45.74 -136.16 REMARK 500 ASN D 268 -11.67 -146.50 REMARK 500 ASP D 332 95.22 -65.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY C 295 PRO C 296 106.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE COA C 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE COA C 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE COA D 500 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1QZT RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE APO FORM OF PHOSPHOTRANSACETYLASE FROM REMARK 900 METHANOSARCINA THERMOPHILA REMARK 900 RELATED ID: 2AF4 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE SAME PROTEIN FROM METHANOSARCINA REMARK 900 THERMOPHILA CO-CRYSTALLIZED WITH COENZYME A DBREF 2AF3 C 1 333 UNP P38503 PTA_METTE 0 332 DBREF 2AF3 D 1 333 UNP P38503 PTA_METTE 0 332 SEQRES 1 C 333 MET VAL THR PHE LEU GLU LYS ILE SER GLU ARG ALA LYS SEQRES 2 C 333 LYS LEU ASN LYS THR ILE ALA LEU PRO GLU THR GLU ASP SEQRES 3 C 333 ILE ARG THR LEU GLN ALA ALA ALA LYS ILE LEU GLU ARG SEQRES 4 C 333 GLY ILE ALA ASP ILE VAL LEU VAL GLY ASN GLU ALA ASP SEQRES 5 C 333 ILE LYS ALA LEU ALA GLY ASP LEU ASP LEU SER LYS ALA SEQRES 6 C 333 LYS ILE VAL ASP PRO LYS THR TYR GLU LYS LYS ASP GLU SEQRES 7 C 333 TYR ILE ASN ALA PHE TYR GLU LEU ARG LYS HIS LYS GLY SEQRES 8 C 333 ILE THR LEU GLU ASN ALA ALA GLU ILE MET SER ASP TYR SEQRES 9 C 333 VAL TYR PHE ALA VAL MET MET ALA LYS LEU GLY GLU VAL SEQRES 10 C 333 ASP GLY VAL VAL SER GLY ALA ALA HIS SER SER SER ASP SEQRES 11 C 333 THR LEU ARG PRO ALA VAL GLN ILE VAL LYS THR ALA LYS SEQRES 12 C 333 GLY ALA ALA LEU ALA SER ALA PHE PHE ILE ILE SER VAL SEQRES 13 C 333 PRO ASP CYS GLU TYR GLY SER ASP GLY THR PHE LEU PHE SEQRES 14 C 333 ALA ASP SER GLY MET VAL GLU MET PRO SER VAL GLU ASP SEQRES 15 C 333 VAL ALA ASN ILE ALA VAL ILE SER ALA LYS THR PHE GLU SEQRES 16 C 333 LEU LEU VAL GLN ASP VAL PRO LYS VAL ALA MET LEU SER SEQRES 17 C 333 TYR SER THR LYS GLY SER ALA LYS SER LYS LEU THR GLU SEQRES 18 C 333 ALA THR ILE ALA SER THR LYS LEU ALA GLN GLU LEU ALA SEQRES 19 C 333 PRO ASP ILE ALA ILE ASP GLY GLU LEU GLN VAL ASP ALA SEQRES 20 C 333 ALA ILE VAL PRO LYS VAL ALA ALA SER LYS ALA PRO GLY SEQRES 21 C 333 SER PRO VAL ALA GLY LYS ALA ASN VAL PHE ILE PHE PRO SEQRES 22 C 333 ASP LEU ASN CYS GLY ASN ILE ALA TYR LYS ILE ALA GLN SEQRES 23 C 333 ARG LEU ALA LYS ALA GLU ALA TYR GLY PRO ILE THR GLN SEQRES 24 C 333 GLY LEU ALA LYS PRO ILE ASN ASP LEU SER ARG GLY CYS SEQRES 25 C 333 SER ASP GLU ASP ILE VAL GLY ALA VAL ALA ILE THR CYS SEQRES 26 C 333 VAL GLN ALA ALA ALA GLN ASP LYS SEQRES 1 D 333 MET VAL THR PHE LEU GLU LYS ILE SER GLU ARG ALA LYS SEQRES 2 D 333 LYS LEU ASN LYS THR ILE ALA LEU PRO GLU THR GLU ASP SEQRES 3 D 333 ILE ARG THR LEU GLN ALA ALA ALA LYS ILE LEU GLU ARG SEQRES 4 D 333 GLY ILE ALA ASP ILE VAL LEU VAL GLY ASN GLU ALA ASP SEQRES 5 D 333 ILE LYS ALA LEU ALA GLY ASP LEU ASP LEU SER LYS ALA SEQRES 6 D 333 LYS ILE VAL ASP PRO LYS THR TYR GLU LYS LYS ASP GLU SEQRES 7 D 333 TYR ILE ASN ALA PHE TYR GLU LEU ARG LYS HIS LYS GLY SEQRES 8 D 333 ILE THR LEU GLU ASN ALA ALA GLU ILE MET SER ASP TYR SEQRES 9 D 333 VAL TYR PHE ALA VAL MET MET ALA LYS LEU GLY GLU VAL SEQRES 10 D 333 ASP GLY VAL VAL SER GLY ALA ALA HIS SER SER SER ASP SEQRES 11 D 333 THR LEU ARG PRO ALA VAL GLN ILE VAL LYS THR ALA LYS SEQRES 12 D 333 GLY ALA ALA LEU ALA SER ALA PHE PHE ILE ILE SER VAL SEQRES 13 D 333 PRO ASP CYS GLU TYR GLY SER ASP GLY THR PHE LEU PHE SEQRES 14 D 333 ALA ASP SER GLY MET VAL GLU MET PRO SER VAL GLU ASP SEQRES 15 D 333 VAL ALA ASN ILE ALA VAL ILE SER ALA LYS THR PHE GLU SEQRES 16 D 333 LEU LEU VAL GLN ASP VAL PRO LYS VAL ALA MET LEU SER SEQRES 17 D 333 TYR SER THR LYS GLY SER ALA LYS SER LYS LEU THR GLU SEQRES 18 D 333 ALA THR ILE ALA SER THR LYS LEU ALA GLN GLU LEU ALA SEQRES 19 D 333 PRO ASP ILE ALA ILE ASP GLY GLU LEU GLN VAL ASP ALA SEQRES 20 D 333 ALA ILE VAL PRO LYS VAL ALA ALA SER LYS ALA PRO GLY SEQRES 21 D 333 SER PRO VAL ALA GLY LYS ALA ASN VAL PHE ILE PHE PRO SEQRES 22 D 333 ASP LEU ASN CYS GLY ASN ILE ALA TYR LYS ILE ALA GLN SEQRES 23 D 333 ARG LEU ALA LYS ALA GLU ALA TYR GLY PRO ILE THR GLN SEQRES 24 D 333 GLY LEU ALA LYS PRO ILE ASN ASP LEU SER ARG GLY CYS SEQRES 25 D 333 SER ASP GLU ASP ILE VAL GLY ALA VAL ALA ILE THR CYS SEQRES 26 D 333 VAL GLN ALA ALA ALA GLN ASP LYS HET SO4 C 503 5 HET COA C 501 48 HET COA C 502 48 HET COA D 500 48 HETNAM SO4 SULFATE ION HETNAM COA COENZYME A FORMUL 3 SO4 O4 S 2- FORMUL 4 COA 3(C21 H36 N7 O16 P3 S) FORMUL 7 HOH *47(H2 O) HELIX 1 1 VAL C 2 LEU C 15 1 14 HELIX 2 2 ASP C 26 GLY C 40 1 15 HELIX 3 3 ASN C 49 GLY C 58 1 10 HELIX 4 4 LYS C 75 LYS C 88 1 14 HELIX 5 5 THR C 93 MET C 101 1 9 HELIX 6 6 ASP C 103 LEU C 114 1 12 HELIX 7 7 SER C 127 VAL C 139 1 13 HELIX 8 8 SER C 179 GLN C 199 1 21 HELIX 9 9 SER C 217 ALA C 234 1 18 HELIX 10 10 GLN C 244 VAL C 250 1 7 HELIX 11 11 VAL C 250 ALA C 258 1 9 HELIX 12 12 ASP C 274 ALA C 289 1 16 HELIX 13 13 SER C 313 ALA C 328 1 16 HELIX 14 14 ALA C 329 GLN C 331 5 3 HELIX 15 15 THR D 3 LEU D 15 1 13 HELIX 16 16 ILE D 27 ALA D 32 1 6 HELIX 17 17 ALA D 32 GLY D 40 1 9 HELIX 18 18 ASN D 49 ALA D 57 1 9 HELIX 19 19 LYS D 76 ARG D 87 1 12 HELIX 20 20 ASP D 103 LEU D 114 1 12 HELIX 21 21 THR D 131 ILE D 138 1 8 HELIX 22 22 SER D 179 GLN D 199 1 21 HELIX 23 23 SER D 217 ALA D 234 1 18 HELIX 24 24 GLN D 244 VAL D 250 1 7 HELIX 25 25 VAL D 250 ALA D 258 1 9 HELIX 26 26 ASP D 274 ALA D 289 1 16 HELIX 27 27 SER D 313 ALA D 329 1 17 SHEET 1 A 5 LYS C 66 VAL C 68 0 SHEET 2 A 5 ASP C 43 VAL C 47 1 N LEU C 46 O VAL C 68 SHEET 3 A 5 THR C 18 LEU C 21 1 N ILE C 19 O ASP C 43 SHEET 4 A 5 GLY C 119 SER C 122 1 O GLY C 119 N ALA C 20 SHEET 5 A 5 ILE C 305 ASP C 307 1 O ASN C 306 N SER C 122 SHEET 1 B 6 ALA C 238 LEU C 243 0 SHEET 2 B 6 LYS C 203 LEU C 207 1 N MET C 206 O LEU C 243 SHEET 3 B 6 VAL C 269 ILE C 271 1 O VAL C 269 N ALA C 205 SHEET 4 B 6 THR C 166 ALA C 170 1 N ALA C 170 O PHE C 270 SHEET 5 B 6 SER C 149 SER C 155 -1 N ILE C 154 O PHE C 167 SHEET 6 B 6 GLU C 292 GLN C 299 -1 O GLU C 292 N SER C 155 SHEET 1 C 2 VAL D 45 VAL D 47 0 SHEET 2 C 2 LYS D 66 VAL D 68 1 O LYS D 66 N LEU D 46 SHEET 1 D 2 VAL D 120 VAL D 121 0 SHEET 2 D 2 ILE D 305 ASN D 306 1 O ASN D 306 N VAL D 120 SHEET 1 E 6 ALA D 238 LEU D 243 0 SHEET 2 E 6 LYS D 203 LEU D 207 1 N MET D 206 O ASP D 240 SHEET 3 E 6 VAL D 269 ILE D 271 1 O VAL D 269 N ALA D 205 SHEET 4 E 6 THR D 166 ALA D 170 1 N LEU D 168 O PHE D 270 SHEET 5 E 6 SER D 149 SER D 155 -1 N ILE D 154 O PHE D 167 SHEET 6 E 6 GLU D 292 GLN D 299 -1 O GLU D 292 N SER D 155 CISPEP 1 ALA C 170 ASP C 171 0 -10.63 CISPEP 2 ALA D 170 ASP D 171 0 -7.38 CISPEP 3 GLY D 241 GLU D 242 0 -5.14 CISPEP 4 GLY D 295 PRO D 296 0 -0.06 SITE 1 AC1 2 LYS C 192 ARG C 310 SITE 1 AC2 19 SER C 128 LEU C 132 GLY C 173 MET C 174 SITE 2 AC2 19 ASN C 279 TYR C 282 LYS C 283 GLN C 286 SITE 3 AC2 19 ALA C 293 GLY C 295 PRO C 296 THR C 298 SITE 4 AC2 19 ASP C 307 SER C 309 HOH C 506 HOH C 527 SITE 5 AC2 19 HOH C 530 GLN D 244 LYS D 257 SITE 1 AC3 7 ARG C 87 VAL C 136 GLN C 137 LEU C 147 SITE 2 AC3 7 ALA C 148 MET C 174 GLU C 176 SITE 1 AC4 9 LYS D 90 SER D 128 SER D 129 ARG D 133 SITE 2 AC4 9 VAL D 136 LEU D 147 ALA D 148 MET D 174 SITE 3 AC4 9 GLU D 176 CRYST1 114.469 114.469 127.832 90.00 90.00 90.00 I 41 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008736 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008736 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007823 0.00000