data_2AGN
# 
_entry.id   2AGN 
# 
_audit_conform.dict_name       mmcif_pdbx.dic 
_audit_conform.dict_version    5.387 
_audit_conform.dict_location   http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 
# 
loop_
_database_2.database_id 
_database_2.database_code 
_database_2.pdbx_database_accession 
_database_2.pdbx_DOI 
PDB   2AGN         pdb_00002agn 10.2210/pdb2agn/pdb 
RCSB  RCSB033870   ?            ?                   
WWPDB D_1000033870 ?            ?                   
# 
loop_
_pdbx_audit_revision_history.ordinal 
_pdbx_audit_revision_history.data_content_type 
_pdbx_audit_revision_history.major_revision 
_pdbx_audit_revision_history.minor_revision 
_pdbx_audit_revision_history.revision_date 
1 'Structure model' 1 0 2006-07-25 
2 'Structure model' 1 1 2008-04-30 
3 'Structure model' 1 2 2011-07-13 
4 'Structure model' 1 3 2013-12-18 
5 'Structure model' 1 4 2019-12-18 
6 'Structure model' 1 5 2024-03-13 
# 
_pdbx_audit_revision_details.ordinal             1 
_pdbx_audit_revision_details.revision_ordinal    1 
_pdbx_audit_revision_details.data_content_type   'Structure model' 
_pdbx_audit_revision_details.provider            repository 
_pdbx_audit_revision_details.type                'Initial release' 
_pdbx_audit_revision_details.description         ? 
_pdbx_audit_revision_details.details             ? 
# 
loop_
_pdbx_audit_revision_group.ordinal 
_pdbx_audit_revision_group.revision_ordinal 
_pdbx_audit_revision_group.data_content_type 
_pdbx_audit_revision_group.group 
1 2 'Structure model' 'Version format compliance' 
2 3 'Structure model' 'Version format compliance' 
3 4 'Structure model' 'Structure summary'         
4 5 'Structure model' 'Data collection'           
5 5 'Structure model' 'Database references'       
6 5 'Structure model' 'Source and taxonomy'       
7 6 'Structure model' 'Data collection'           
8 6 'Structure model' 'Database references'       
9 6 'Structure model' 'Refinement description'    
# 
loop_
_pdbx_audit_revision_category.ordinal 
_pdbx_audit_revision_category.revision_ordinal 
_pdbx_audit_revision_category.data_content_type 
_pdbx_audit_revision_category.category 
1 5 'Structure model' database_2                    
2 5 'Structure model' em_image_scans                
3 5 'Structure model' em_software                   
4 5 'Structure model' pdbx_entity_src_syn           
5 6 'Structure model' chem_comp_atom                
6 6 'Structure model' chem_comp_bond                
7 6 'Structure model' database_2                    
8 6 'Structure model' em_3d_fitting_list            
9 6 'Structure model' pdbx_initial_refinement_model 
# 
loop_
_pdbx_audit_revision_item.ordinal 
_pdbx_audit_revision_item.revision_ordinal 
_pdbx_audit_revision_item.data_content_type 
_pdbx_audit_revision_item.item 
1 5 'Structure model' '_em_software.image_processing_id'                
2 6 'Structure model' '_database_2.pdbx_DOI'                            
3 6 'Structure model' '_database_2.pdbx_database_accession'             
4 6 'Structure model' '_em_3d_fitting_list.accession_code'              
5 6 'Structure model' '_em_3d_fitting_list.initial_refinement_model_id' 
6 6 'Structure model' '_em_3d_fitting_list.source_name'                 
7 6 'Structure model' '_em_3d_fitting_list.type'                        
# 
_pdbx_database_status.status_code                     REL 
_pdbx_database_status.entry_id                        2AGN 
_pdbx_database_status.recvd_initial_deposition_date   2005-07-27 
_pdbx_database_status.deposit_site                    RCSB 
_pdbx_database_status.process_site                    PDBJ 
_pdbx_database_status.status_code_sf                  ? 
_pdbx_database_status.status_code_mr                  ? 
_pdbx_database_status.SG_entry                        ? 
_pdbx_database_status.status_code_cs                  ? 
_pdbx_database_status.pdb_format_compatible           Y 
_pdbx_database_status.methods_development_category    ? 
_pdbx_database_status.status_code_nmr_data            ? 
# 
_pdbx_database_related.db_name        EMDB 
_pdbx_database_related.db_id          EMD-1138 
_pdbx_database_related.details        . 
_pdbx_database_related.content_type   'associated EM volume' 
# 
loop_
_audit_author.name 
_audit_author.pdbx_ordinal 
'Boehringer, D.'       1 
'Thermann, R.'         2 
'Ostareck-Lederer, A.' 3 
'Lewis, J.D.'          4 
'Stark, H.'            5 
# 
_citation.id                        primary 
_citation.title                     
'Structure of the hepatitis C Virus IRES bound to the human 80S ribosome: remodeling of the HCV IRES' 
_citation.journal_abbrev            Structure 
_citation.journal_volume            13 
_citation.page_first                1695 
_citation.page_last                 1706 
_citation.year                      2005 
_citation.journal_id_ASTM           STRUE6 
_citation.country                   UK 
_citation.journal_id_ISSN           0969-2126 
_citation.journal_id_CSD            2005 
_citation.book_publisher            ? 
_citation.pdbx_database_id_PubMed   16271893 
_citation.pdbx_database_id_DOI      10.1016/j.str.2005.08.008 
# 
loop_
_citation_author.citation_id 
_citation_author.name 
_citation_author.ordinal 
_citation_author.identifier_ORCID 
primary 'Boehringer, D.'       1 ? 
primary 'Thermann, R.'         2 ? 
primary 'Ostareck-Lederer, A.' 3 ? 
primary 'Lewis, J.D.'          4 ? 
primary 'Stark, H.'            5 ? 
# 
loop_
_entity.id 
_entity.type 
_entity.src_method 
_entity.pdbx_description 
_entity.formula_weight 
_entity.pdbx_number_of_molecules 
_entity.pdbx_ec 
_entity.pdbx_mutation 
_entity.pdbx_fragment 
_entity.details 
1 polymer syn 'HCV-1B IRES RNA SUB-DOMAIN IIID' 9450.667  1 ? ? ? ? 
2 polymer syn 'HCV IRES SUB-DOMAIN IIIB'        9595.754  1 ? ? ? ? 
3 polymer syn 'HCV IRES DOMAIN II'              24776.691 1 ? ? ? ? 
4 polymer syn '6 nt A-RNA helix'                4547.780  1 ? ? ? ? 
5 polymer syn 'HCV IRES IIIABC'                 17161.283 1 ? ? ? ? 
# 
loop_
_entity_poly.entity_id 
_entity_poly.type 
_entity_poly.nstd_linkage 
_entity_poly.nstd_monomer 
_entity_poly.pdbx_seq_one_letter_code 
_entity_poly.pdbx_seq_one_letter_code_can 
_entity_poly.pdbx_strand_id 
_entity_poly.pdbx_target_identifier 
1 polyribonucleotide no no GGCCGAGUAGUGUUGGGUCGCGAAAGGCC                                                 
GGCCGAGUAGUGUUGGGUCGCGAAAGGCC                                                 A ? 
2 polyribonucleotide no no GGCGCUCAAUGCUCUUCGGAGACGACCGCC                                                
GGCGCUCAAUGCUCUUCGGAGACGACCGCC                                                B ? 
3 polyribonucleotide no no GGCUGUGAGGAACUACUGUCUUCACGCAGAAAGCGUCUAGCCAUGGCGUUAGUAUGAGUGUCGUGCAGCCUCCAGCC 
GGCUGUGAGGAACUACUGUCUUCACGCAGAAAGCGUCUAGCCAUGGCGUUAGUAUGAGUGUCGUGCAGCCUCCAGCC C ? 
4 polyribonucleotide no no CCCGGGGCCCGGGG                                                                CCCGGGGCCCGGGG D ? 
5 polyribonucleotide no no GGCGGAACCGGUGAGUACACCGGAAUCCGAAAGGAUUUGGGCGUGCCCCCGCC                         
GGCGGAACCGGUGAGUACACCGGAAUCCGAAAGGAUUUGGGCGUGCCCCCGCC                         E ? 
# 
loop_
_entity_poly_seq.entity_id 
_entity_poly_seq.num 
_entity_poly_seq.mon_id 
_entity_poly_seq.hetero 
1 1  G n 
1 2  G n 
1 3  C n 
1 4  C n 
1 5  G n 
1 6  A n 
1 7  G n 
1 8  U n 
1 9  A n 
1 10 G n 
1 11 U n 
1 12 G n 
1 13 U n 
1 14 U n 
1 15 G n 
1 16 G n 
1 17 G n 
1 18 U n 
1 19 C n 
1 20 G n 
1 21 C n 
1 22 G n 
1 23 A n 
1 24 A n 
1 25 A n 
1 26 G n 
1 27 G n 
1 28 C n 
1 29 C n 
2 1  G n 
2 2  G n 
2 3  C n 
2 4  G n 
2 5  C n 
2 6  U n 
2 7  C n 
2 8  A n 
2 9  A n 
2 10 U n 
2 11 G n 
2 12 C n 
2 13 U n 
2 14 C n 
2 15 U n 
2 16 U n 
2 17 C n 
2 18 G n 
2 19 G n 
2 20 A n 
2 21 G n 
2 22 A n 
2 23 C n 
2 24 G n 
2 25 A n 
2 26 C n 
2 27 C n 
2 28 G n 
2 29 C n 
2 30 C n 
3 1  G n 
3 2  G n 
3 3  C n 
3 4  U n 
3 5  G n 
3 6  U n 
3 7  G n 
3 8  A n 
3 9  G n 
3 10 G n 
3 11 A n 
3 12 A n 
3 13 C n 
3 14 U n 
3 15 A n 
3 16 C n 
3 17 U n 
3 18 G n 
3 19 U n 
3 20 C n 
3 21 U n 
3 22 U n 
3 23 C n 
3 24 A n 
3 25 C n 
3 26 G n 
3 27 C n 
3 28 A n 
3 29 G n 
3 30 A n 
3 31 A n 
3 32 A n 
3 33 G n 
3 34 C n 
3 35 G n 
3 36 U n 
3 37 C n 
3 38 U n 
3 39 A n 
3 40 G n 
3 41 C n 
3 42 C n 
3 43 A n 
3 44 U n 
3 45 G n 
3 46 G n 
3 47 C n 
3 48 G n 
3 49 U n 
3 50 U n 
3 51 A n 
3 52 G n 
3 53 U n 
3 54 A n 
3 55 U n 
3 56 G n 
3 57 A n 
3 58 G n 
3 59 U n 
3 60 G n 
3 61 U n 
3 62 C n 
3 63 G n 
3 64 U n 
3 65 G n 
3 66 C n 
3 67 A n 
3 68 G n 
3 69 C n 
3 70 C n 
3 71 U n 
3 72 C n 
3 73 C n 
3 74 A n 
3 75 G n 
3 76 C n 
3 77 C n 
4 1  C n 
4 2  C n 
4 3  C n 
4 4  G n 
4 5  G n 
4 6  G n 
4 7  G n 
4 8  C n 
4 9  C n 
4 10 C n 
4 11 G n 
4 12 G n 
4 13 G n 
4 14 G n 
5 1  G n 
5 2  G n 
5 3  C n 
5 4  G n 
5 5  G n 
5 6  A n 
5 7  A n 
5 8  C n 
5 9  C n 
5 10 G n 
5 11 G n 
5 12 U n 
5 13 G n 
5 14 A n 
5 15 G n 
5 16 U n 
5 17 A n 
5 18 C n 
5 19 A n 
5 20 C n 
5 21 C n 
5 22 G n 
5 23 G n 
5 24 A n 
5 25 A n 
5 26 U n 
5 27 C n 
5 28 C n 
5 29 G n 
5 30 A n 
5 31 A n 
5 32 A n 
5 33 G n 
5 34 G n 
5 35 A n 
5 36 U n 
5 37 U n 
5 38 U n 
5 39 G n 
5 40 G n 
5 41 G n 
5 42 C n 
5 43 G n 
5 44 U n 
5 45 G n 
5 46 C n 
5 47 C n 
5 48 C n 
5 49 C n 
5 50 C n 
5 51 G n 
5 52 C n 
5 53 C n 
# 
loop_
_pdbx_entity_src_syn.entity_id 
_pdbx_entity_src_syn.pdbx_src_id 
_pdbx_entity_src_syn.pdbx_alt_source_flag 
_pdbx_entity_src_syn.pdbx_beg_seq_num 
_pdbx_entity_src_syn.pdbx_end_seq_num 
_pdbx_entity_src_syn.organism_scientific 
_pdbx_entity_src_syn.organism_common_name 
_pdbx_entity_src_syn.ncbi_taxonomy_id 
_pdbx_entity_src_syn.details 
1 1 sample ? ? 'synthetic construct' ? 32630 ? 
2 1 sample ? ? 'synthetic construct' ? 32630 ? 
3 1 sample ? ? 'synthetic construct' ? 32630 ? 
4 1 sample ? ? 'synthetic construct' ? 32630 ? 
5 1 sample ? ? 'synthetic construct' ? 32630 ? 
# 
loop_
_chem_comp.id 
_chem_comp.type 
_chem_comp.mon_nstd_flag 
_chem_comp.name 
_chem_comp.pdbx_synonyms 
_chem_comp.formula 
_chem_comp.formula_weight 
A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 
C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE"  ? 'C9 H14 N3 O8 P'  323.197 
G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 
U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE"   ? 'C9 H13 N2 O9 P'  324.181 
# 
loop_
_pdbx_poly_seq_scheme.asym_id 
_pdbx_poly_seq_scheme.entity_id 
_pdbx_poly_seq_scheme.seq_id 
_pdbx_poly_seq_scheme.mon_id 
_pdbx_poly_seq_scheme.ndb_seq_num 
_pdbx_poly_seq_scheme.pdb_seq_num 
_pdbx_poly_seq_scheme.auth_seq_num 
_pdbx_poly_seq_scheme.pdb_mon_id 
_pdbx_poly_seq_scheme.auth_mon_id 
_pdbx_poly_seq_scheme.pdb_strand_id 
_pdbx_poly_seq_scheme.pdb_ins_code 
_pdbx_poly_seq_scheme.hetero 
A 1 1  G 1  1  ?  ? ? A . n 
A 1 2  G 2  2  2  G G A . n 
A 1 3  C 3  3  3  C C A . n 
A 1 4  C 4  4  4  C C A . n 
A 1 5  G 5  5  5  G G A . n 
A 1 6  A 6  6  6  A A A . n 
A 1 7  G 7  7  7  G G A . n 
A 1 8  U 8  8  8  U U A . n 
A 1 9  A 9  9  9  A A A . n 
A 1 10 G 10 10 10 G G A . n 
A 1 11 U 11 11 11 U U A . n 
A 1 12 G 12 12 12 G G A . n 
A 1 13 U 13 13 13 U U A . n 
A 1 14 U 14 14 14 U U A . n 
A 1 15 G 15 15 15 G G A . n 
A 1 16 G 16 16 16 G G A . n 
A 1 17 G 17 17 17 G G A . n 
A 1 18 U 18 18 18 U U A . n 
A 1 19 C 19 19 19 C C A . n 
A 1 20 G 20 20 20 G G A . n 
A 1 21 C 21 21 21 C C A . n 
A 1 22 G 22 22 22 G G A . n 
A 1 23 A 23 23 23 A A A . n 
A 1 24 A 24 24 24 A A A . n 
A 1 25 A 25 25 25 A A A . n 
A 1 26 G 26 26 26 G G A . n 
A 1 27 G 27 27 27 G G A . n 
A 1 28 C 28 28 28 C C A . n 
A 1 29 C 29 29 29 C C A . n 
B 2 1  G 1  1  ?  ? ? B . n 
B 2 2  G 2  2  2  G G B . n 
B 2 3  C 3  3  3  C C B . n 
B 2 4  G 4  4  4  G G B . n 
B 2 5  C 5  5  5  C C B . n 
B 2 6  U 6  6  6  U U B . n 
B 2 7  C 7  7  7  C C B . n 
B 2 8  A 8  8  8  A A B . n 
B 2 9  A 9  9  9  A A B . n 
B 2 10 U 10 10 10 U U B . n 
B 2 11 G 11 11 11 G G B . n 
B 2 12 C 12 12 12 C C B . n 
B 2 13 U 13 13 13 U U B . n 
B 2 14 C 14 14 14 C C B . n 
B 2 15 U 15 15 ?  ? ? B . n 
B 2 16 U 16 16 ?  ? ? B . n 
B 2 17 C 17 17 ?  ? ? B . n 
B 2 18 G 18 18 ?  ? ? B . n 
B 2 19 G 19 19 19 G G B . n 
B 2 20 A 20 20 20 A A B . n 
B 2 21 G 21 21 21 G G B . n 
B 2 22 A 22 22 22 A A B . n 
B 2 23 C 23 23 23 C C B . n 
B 2 24 G 24 24 24 G G B . n 
B 2 25 A 25 25 25 A A B . n 
B 2 26 C 26 26 26 C C B . n 
B 2 27 C 27 27 27 C C B . n 
B 2 28 G 28 28 28 G G B . n 
B 2 29 C 29 29 29 C C B . n 
B 2 30 C 30 30 30 C C B . n 
C 3 1  G 1  1  ?  ? ? C . n 
C 3 2  G 2  2  2  G G C . n 
C 3 3  C 3  3  3  C C C . n 
C 3 4  U 4  4  4  U U C . n 
C 3 5  G 5  5  5  G G C . n 
C 3 6  U 6  6  6  U U C . n 
C 3 7  G 7  7  7  G G C . n 
C 3 8  A 8  8  8  A A C . n 
C 3 9  G 9  9  9  G G C . n 
C 3 10 G 10 10 10 G G C . n 
C 3 11 A 11 11 11 A A C . n 
C 3 12 A 12 12 12 A A C . n 
C 3 13 C 13 13 13 C C C . n 
C 3 14 U 14 14 14 U U C . n 
C 3 15 A 15 15 15 A A C . n 
C 3 16 C 16 16 16 C C C . n 
C 3 17 U 17 17 17 U U C . n 
C 3 18 G 18 18 18 G G C . n 
C 3 19 U 19 19 19 U U C . n 
C 3 20 C 20 20 20 C C C . n 
C 3 21 U 21 21 21 U U C . n 
C 3 22 U 22 22 22 U U C . n 
C 3 23 C 23 23 23 C C C . n 
C 3 24 A 24 24 24 A A C . n 
C 3 25 C 25 25 25 C C C . n 
C 3 26 G 26 26 26 G G C . n 
C 3 27 C 27 27 27 C C C . n 
C 3 28 A 28 28 28 A A C . n 
C 3 29 G 29 29 29 G G C . n 
C 3 30 A 30 30 30 A A C . n 
C 3 31 A 31 31 31 A A C . n 
C 3 32 A 32 32 32 A A C . n 
C 3 33 G 33 33 33 G G C . n 
C 3 34 C 34 34 34 C C C . n 
C 3 35 G 35 35 35 G G C . n 
C 3 36 U 36 36 36 U U C . n 
C 3 37 C 37 37 37 C C C . n 
C 3 38 U 38 38 38 U U C . n 
C 3 39 A 39 39 39 A A C . n 
C 3 40 G 40 40 40 G G C . n 
C 3 41 C 41 41 41 C C C . n 
C 3 42 C 42 42 42 C C C . n 
C 3 43 A 43 43 43 A A C . n 
C 3 44 U 44 44 44 U U C . n 
C 3 45 G 45 45 45 G G C . n 
C 3 46 G 46 46 46 G G C . n 
C 3 47 C 47 47 47 C C C . n 
C 3 48 G 48 48 48 G G C . n 
C 3 49 U 49 49 49 U U C . n 
C 3 50 U 50 50 50 U U C . n 
C 3 51 A 51 51 51 A A C . n 
C 3 52 G 52 52 52 G G C . n 
C 3 53 U 53 53 53 U U C . n 
C 3 54 A 54 54 54 A A C . n 
C 3 55 U 55 55 55 U U C . n 
C 3 56 G 56 56 56 G G C . n 
C 3 57 A 57 57 57 A A C . n 
C 3 58 G 58 58 58 G G C . n 
C 3 59 U 59 59 59 U U C . n 
C 3 60 G 60 60 60 G G C . n 
C 3 61 U 61 61 61 U U C . n 
C 3 62 C 62 62 62 C C C . n 
C 3 63 G 63 63 63 G G C . n 
C 3 64 U 64 64 64 U U C . n 
C 3 65 G 65 65 65 G G C . n 
C 3 66 C 66 66 66 C C C . n 
C 3 67 A 67 67 67 A A C . n 
C 3 68 G 68 68 68 G G C . n 
C 3 69 C 69 69 69 C C C . n 
C 3 70 C 70 70 70 C C C . n 
C 3 71 U 71 71 71 U U C . n 
C 3 72 C 72 72 72 C C C . n 
C 3 73 C 73 73 73 C C C . n 
C 3 74 A 74 74 74 A A C . n 
C 3 75 G 75 75 75 G G C . n 
C 3 76 C 76 76 76 C C C . n 
C 3 77 C 77 77 77 C C C . n 
D 4 1  C 1  2  2  C C D . n 
D 4 2  C 2  3  3  C C D . n 
D 4 3  C 3  4  4  C C D . n 
D 4 4  G 4  5  5  G G D . n 
D 4 5  G 5  6  6  G G D . n 
D 4 6  G 6  7  7  G G D . n 
D 4 7  G 7  8  8  G G D . n 
D 4 8  C 8  9  9  C C D . n 
D 4 9  C 9  10 10 C C D . n 
D 4 10 C 10 11 11 C C D . n 
D 4 11 G 11 12 12 G G D . n 
D 4 12 G 12 13 13 G G D . n 
D 4 13 G 13 14 14 G G D . n 
D 4 14 G 14 15 15 G G D . n 
E 5 1  G 1  1  ?  ? ? E . n 
E 5 2  G 2  2  2  G G E . n 
E 5 3  C 3  3  3  C C E . n 
E 5 4  G 4  4  4  G G E . n 
E 5 5  G 5  5  5  G G E . n 
E 5 6  A 6  6  6  A A E . n 
E 5 7  A 7  7  7  A A E . n 
E 5 8  C 8  8  8  C C E . n 
E 5 9  C 9  9  9  C C E . n 
E 5 10 G 10 10 10 G G E . n 
E 5 11 G 11 11 ?  ? ? E . n 
E 5 12 U 12 12 ?  ? ? E . n 
E 5 13 G 13 13 ?  ? ? E . n 
E 5 14 A 14 14 ?  ? ? E . n 
E 5 15 G 15 15 ?  ? ? E . n 
E 5 16 U 16 16 ?  ? ? E . n 
E 5 17 A 17 17 17 A A E . n 
E 5 18 C 18 18 18 C C E . n 
E 5 19 A 19 19 19 A A E . n 
E 5 20 C 20 20 20 C C E . n 
E 5 21 C 21 21 21 C C E . n 
E 5 22 G 22 22 22 G G E . n 
E 5 23 G 23 23 23 G G E . n 
E 5 24 A 24 24 24 A A E . n 
E 5 25 A 25 25 25 A A E . n 
E 5 26 U 26 26 26 U U E . n 
E 5 27 C 27 27 27 C C E . n 
E 5 28 C 28 28 28 C C E . n 
E 5 29 G 29 29 ?  ? ? E . n 
E 5 30 A 30 30 ?  ? ? E . n 
E 5 31 A 31 31 ?  ? ? E . n 
E 5 32 A 32 32 ?  ? ? E . n 
E 5 33 G 33 33 33 G G E . n 
E 5 34 G 34 34 34 G G E . n 
E 5 35 A 35 35 35 A A E . n 
E 5 36 U 36 36 36 U U E . n 
E 5 37 U 37 37 37 U U E . n 
E 5 38 U 38 38 38 U U E . n 
E 5 39 G 39 39 39 G G E . n 
E 5 40 G 40 40 40 G G E . n 
E 5 41 G 41 41 41 G G E . n 
E 5 42 C 42 42 42 C C E . n 
E 5 43 G 43 43 43 G G E . n 
E 5 44 U 44 44 ?  ? ? E . n 
E 5 45 G 45 45 45 G G E . n 
E 5 46 C 46 46 46 C C E . n 
E 5 47 C 47 47 47 C C E . n 
E 5 48 C 48 48 48 C C E . n 
E 5 49 C 49 49 49 C C E . n 
E 5 50 C 50 50 50 C C E . n 
E 5 51 G 51 51 51 G G E . n 
E 5 52 C 52 52 52 C C E . n 
E 5 53 C 53 53 ?  ? ? E . n 
# 
_cell.entry_id           2AGN 
_cell.length_a           1.000 
_cell.length_b           1.000 
_cell.length_c           1.000 
_cell.angle_alpha        90.00 
_cell.angle_beta         90.00 
_cell.angle_gamma        90.00 
_cell.Z_PDB              1 
_cell.pdbx_unique_axis   ? 
# 
_symmetry.entry_id                         2AGN 
_symmetry.space_group_name_H-M             'P 1' 
_symmetry.pdbx_full_space_group_name_H-M   ? 
_symmetry.cell_setting                     ? 
_symmetry.Int_Tables_number                1 
# 
_exptl.entry_id          2AGN 
_exptl.method            'ELECTRON MICROSCOPY' 
_exptl.crystals_number   ? 
# 
_exptl_crystal.id                    1 
_exptl_crystal.density_meas          ? 
_exptl_crystal.density_Matthews      ? 
_exptl_crystal.density_percent_sol   ? 
_exptl_crystal.description           ? 
# 
_diffrn.id                     1 
_diffrn.ambient_temp           ? 
_diffrn.ambient_temp_details   ? 
_diffrn.crystal_id             1 
# 
_diffrn_radiation.diffrn_id                        1 
_diffrn_radiation.wavelength_id                    1 
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l   M 
_diffrn_radiation.monochromator                    ? 
_diffrn_radiation.pdbx_diffrn_protocol             'SINGLE WAVELENGTH' 
_diffrn_radiation.pdbx_scattering_type             x-ray 
# 
_diffrn_radiation_wavelength.id           1 
_diffrn_radiation_wavelength.wavelength   . 
_diffrn_radiation_wavelength.wt           1.0 
# 
_refine_hist.pdbx_refine_id                   'ELECTRON MICROSCOPY' 
_refine_hist.cycle_id                         LAST 
_refine_hist.pdbx_number_atoms_protein        0 
_refine_hist.pdbx_number_atoms_nucleic_acid   183 
_refine_hist.pdbx_number_atoms_ligand         0 
_refine_hist.number_atoms_solvent             0 
_refine_hist.number_atoms_total               183 
_refine_hist.d_res_high                       . 
_refine_hist.d_res_low                        . 
# 
_database_PDB_matrix.entry_id          2AGN 
_database_PDB_matrix.origx[1][1]       1.000000 
_database_PDB_matrix.origx[1][2]       0.000000 
_database_PDB_matrix.origx[1][3]       0.000000 
_database_PDB_matrix.origx[2][1]       0.000000 
_database_PDB_matrix.origx[2][2]       1.000000 
_database_PDB_matrix.origx[2][3]       0.000000 
_database_PDB_matrix.origx[3][1]       0.000000 
_database_PDB_matrix.origx[3][2]       0.000000 
_database_PDB_matrix.origx[3][3]       1.000000 
_database_PDB_matrix.origx_vector[1]   0.00000 
_database_PDB_matrix.origx_vector[2]   0.00000 
_database_PDB_matrix.origx_vector[3]   0.00000 
# 
_struct.entry_id                  2AGN 
_struct.title                     
;Fitting of hepatitis C virus internal ribosome entry site domains into the 15 A Cryo-EM map of a HCV IRES-80S ribosome (H. sapiens) complex
;
_struct.pdbx_model_details        ? 
_struct.pdbx_CASP_flag            ? 
_struct.pdbx_model_type_details   ? 
# 
_struct_keywords.entry_id        2AGN 
_struct_keywords.pdbx_keywords   RNA 
_struct_keywords.text            'HCV, IRES, RNA' 
# 
loop_
_struct_asym.id 
_struct_asym.pdbx_blank_PDB_chainid_flag 
_struct_asym.pdbx_modified 
_struct_asym.entity_id 
_struct_asym.details 
A N N 1 ? 
B N N 2 ? 
C N N 3 ? 
D N N 4 ? 
E N N 5 ? 
# 
loop_
_struct_ref.id 
_struct_ref.entity_id 
_struct_ref.db_name 
_struct_ref.db_code 
_struct_ref.pdbx_db_accession 
_struct_ref.pdbx_db_isoform 
_struct_ref.pdbx_seq_one_letter_code 
_struct_ref.pdbx_align_begin 
1 1 PDB 2AGN 2AGN ? ? ? 
2 2 PDB 2AGN 2AGN ? ? ? 
3 3 PDB 2AGN 2AGN ? ? ? 
4 4 PDB 2AGN 2AGN ? ? ? 
5 5 PDB 2AGN 2AGN ? ? ? 
# 
loop_
_struct_ref_seq.align_id 
_struct_ref_seq.ref_id 
_struct_ref_seq.pdbx_PDB_id_code 
_struct_ref_seq.pdbx_strand_id 
_struct_ref_seq.seq_align_beg 
_struct_ref_seq.pdbx_seq_align_beg_ins_code 
_struct_ref_seq.seq_align_end 
_struct_ref_seq.pdbx_seq_align_end_ins_code 
_struct_ref_seq.pdbx_db_accession 
_struct_ref_seq.db_align_beg 
_struct_ref_seq.pdbx_db_align_beg_ins_code 
_struct_ref_seq.db_align_end 
_struct_ref_seq.pdbx_db_align_end_ins_code 
_struct_ref_seq.pdbx_auth_seq_align_beg 
_struct_ref_seq.pdbx_auth_seq_align_end 
1 1 2AGN A 1 ? 29 ? 2AGN 1 ? 29 ? 1 29 
2 2 2AGN B 1 ? 30 ? 2AGN 1 ? 30 ? 1 30 
3 3 2AGN C 1 ? 77 ? 2AGN 1 ? 77 ? 1 77 
4 4 2AGN D 1 ? 14 ? 2AGN 2 ? 15 ? 2 15 
5 5 2AGN E 1 ? 53 ? 2AGN 1 ? 53 ? 1 53 
# 
_pdbx_struct_assembly.id                   1 
_pdbx_struct_assembly.details              author_defined_assembly 
_pdbx_struct_assembly.method_details       ? 
_pdbx_struct_assembly.oligomeric_details   pentameric 
_pdbx_struct_assembly.oligomeric_count     5 
# 
_pdbx_struct_assembly_gen.assembly_id       1 
_pdbx_struct_assembly_gen.oper_expression   1 
_pdbx_struct_assembly_gen.asym_id_list      A,B,C,D,E 
# 
_pdbx_struct_oper_list.id                   1 
_pdbx_struct_oper_list.type                 'identity operation' 
_pdbx_struct_oper_list.name                 1_555 
_pdbx_struct_oper_list.symmetry_operation   x,y,z 
_pdbx_struct_oper_list.matrix[1][1]         1.0000000000 
_pdbx_struct_oper_list.matrix[1][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[1][3]         0.0000000000 
_pdbx_struct_oper_list.vector[1]            0.0000000000 
_pdbx_struct_oper_list.matrix[2][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[2][2]         1.0000000000 
_pdbx_struct_oper_list.matrix[2][3]         0.0000000000 
_pdbx_struct_oper_list.vector[2]            0.0000000000 
_pdbx_struct_oper_list.matrix[3][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][3]         1.0000000000 
_pdbx_struct_oper_list.vector[3]            0.0000000000 
# 
_em_3d_fitting.id                1 
_em_3d_fitting.entry_id          2AGN 
_em_3d_fitting.ref_protocol      ? 
_em_3d_fitting.ref_space         REAL 
_em_3d_fitting.overall_b_value   ? 
_em_3d_fitting.target_criteria   ? 
_em_3d_fitting.details           ? 
_em_3d_fitting.method            ? 
# 
loop_
_em_3d_fitting_list.3d_fitting_id 
_em_3d_fitting_list.id 
_em_3d_fitting_list.pdb_entry_id 
_em_3d_fitting_list.pdb_chain_id 
_em_3d_fitting_list.details 
_em_3d_fitting_list.initial_refinement_model_id 
_em_3d_fitting_list.chain_id 
_em_3d_fitting_list.chain_residue_range 
_em_3d_fitting_list.pdb_chain_residue_range 
_em_3d_fitting_list.source_name 
_em_3d_fitting_list.type 
_em_3d_fitting_list.accession_code 
1 1 1P5P ? ? 1 ? ? ? PDB 'experimental model' 1P5P 
1 2 1F84 ? ? 2 ? ? ? PDB 'experimental model' 1F84 
1 3 1KH6 ? ? 3 ? ? ? PDB 'experimental model' 1KH6 
1 4 1KP7 ? ? 4 ? ? ? PDB 'experimental model' 1KP7 
# 
_em_3d_reconstruction.entry_id                    2AGN 
_em_3d_reconstruction.id                          1 
_em_3d_reconstruction.symmetry_type               POINT 
_em_3d_reconstruction.num_particles               24100 
_em_3d_reconstruction.image_processing_id         1 
_em_3d_reconstruction.method                      'angular reconstitution' 
_em_3d_reconstruction.nominal_pixel_size          3.6 
_em_3d_reconstruction.actual_pixel_size           3.6 
_em_3d_reconstruction.resolution                  15 
_em_3d_reconstruction.magnification_calibration   ? 
_em_3d_reconstruction.details                     'This entry contains only phosphorus atom in the coordinate.' 
_em_3d_reconstruction.resolution_method           ? 
_em_3d_reconstruction.num_class_averages          ? 
_em_3d_reconstruction.algorithm                   ? 
_em_3d_reconstruction.refinement_type             ? 
# 
_em_buffer.id            1 
_em_buffer.specimen_id   1 
_em_buffer.name          ? 
_em_buffer.pH            8.1 
_em_buffer.details       ? 
# 
_em_entity_assembly.id                   1 
_em_entity_assembly.name                 'HCV IRES-80S ribosome complex' 
_em_entity_assembly.type                 RIBOSOME 
_em_entity_assembly.parent_id            0 
_em_entity_assembly.synonym              ? 
_em_entity_assembly.details              ? 
_em_entity_assembly.oligomeric_details   ? 
# 
_em_imaging.entry_id                        2AGN 
_em_imaging.id                              1 
_em_imaging.microscope_model                'FEI/PHILIPS CM200FEG' 
_em_imaging.illumination_mode               'FLOOD BEAM' 
_em_imaging.electron_source                 'FIELD EMISSION GUN' 
_em_imaging.specimen_id                     1 
_em_imaging.date                            2003-10-01 
_em_imaging.temperature                     77 
_em_imaging.nominal_defocus_min             2000 
_em_imaging.nominal_defocus_max             4000 
_em_imaging.tilt_angle_min                  0 
_em_imaging.tilt_angle_max                  0 
_em_imaging.nominal_cs                      2 
_em_imaging.mode                            'BRIGHT FIELD' 
_em_imaging.nominal_magnification           50000 
_em_imaging.calibrated_magnification        50000 
_em_imaging.accelerating_voltage            200 
_em_imaging.details                         ? 
_em_imaging.specimen_holder_type            ? 
_em_imaging.specimen_holder_model           ? 
_em_imaging.citation_id                     ? 
_em_imaging.detector_distance               ? 
_em_imaging.recording_temperature_maximum   ? 
_em_imaging.recording_temperature_minimum   ? 
_em_imaging.astigmatism                     ? 
_em_imaging.electron_beam_tilt_params       ? 
# 
_em_sample_support.id               1 
_em_sample_support.specimen_id      1 
_em_sample_support.details          'perforated corbon foil on a copper grid' 
_em_sample_support.film_material    ? 
_em_sample_support.grid_material    ? 
_em_sample_support.grid_mesh_size   ? 
_em_sample_support.grid_type        ? 
_em_sample_support.method           ? 
# 
_em_vitrification.entry_id              2AGN 
_em_vitrification.id                    1 
_em_vitrification.cryogen_name          ETHANE 
_em_vitrification.details               'plunging into liquid ethane' 
_em_vitrification.citation_id           ? 
_em_vitrification.humidity              ? 
_em_vitrification.instrument            ? 
_em_vitrification.method                ? 
_em_vitrification.specimen_id           1 
_em_vitrification.temp                  ? 
_em_vitrification.time_resolved_state   ? 
# 
_em_experiment.entry_id                2AGN 
_em_experiment.id                      1 
_em_experiment.aggregation_state       PARTICLE 
_em_experiment.entity_assembly_id      1 
_em_experiment.reconstruction_method   'SINGLE PARTICLE' 
# 
_em_single_particle_entity.entry_id              2AGN 
_em_single_particle_entity.id                    1 
_em_single_particle_entity.point_symmetry        C1 
_em_single_particle_entity.image_processing_id   1 
# 
loop_
_pdbx_unobs_or_zero_occ_residues.id 
_pdbx_unobs_or_zero_occ_residues.PDB_model_num 
_pdbx_unobs_or_zero_occ_residues.polymer_flag 
_pdbx_unobs_or_zero_occ_residues.occupancy_flag 
_pdbx_unobs_or_zero_occ_residues.auth_asym_id 
_pdbx_unobs_or_zero_occ_residues.auth_comp_id 
_pdbx_unobs_or_zero_occ_residues.auth_seq_id 
_pdbx_unobs_or_zero_occ_residues.PDB_ins_code 
_pdbx_unobs_or_zero_occ_residues.label_asym_id 
_pdbx_unobs_or_zero_occ_residues.label_comp_id 
_pdbx_unobs_or_zero_occ_residues.label_seq_id 
1  1 Y 1 A G 1  ? A G 1  
2  1 Y 1 B G 1  ? B G 1  
3  1 Y 1 B U 15 ? B U 15 
4  1 Y 1 B U 16 ? B U 16 
5  1 Y 1 B C 17 ? B C 17 
6  1 Y 1 B G 18 ? B G 18 
7  1 Y 1 C G 1  ? C G 1  
8  1 Y 1 E G 1  ? E G 1  
9  1 Y 1 E G 11 ? E G 11 
10 1 Y 1 E U 12 ? E U 12 
11 1 Y 1 E G 13 ? E G 13 
12 1 Y 1 E A 14 ? E A 14 
13 1 Y 1 E G 15 ? E G 15 
14 1 Y 1 E U 16 ? E U 16 
15 1 Y 1 E G 29 ? E G 29 
16 1 Y 1 E A 30 ? E A 30 
17 1 Y 1 E A 31 ? E A 31 
18 1 Y 1 E A 32 ? E A 32 
19 1 Y 1 E U 44 ? E U 44 
20 1 Y 1 E C 53 ? E C 53 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_ordinal 
A OP3    O N N 1   
A P      P N N 2   
A OP1    O N N 3   
A OP2    O N N 4   
A "O5'"  O N N 5   
A "C5'"  C N N 6   
A "C4'"  C N R 7   
A "O4'"  O N N 8   
A "C3'"  C N S 9   
A "O3'"  O N N 10  
A "C2'"  C N R 11  
A "O2'"  O N N 12  
A "C1'"  C N R 13  
A N9     N Y N 14  
A C8     C Y N 15  
A N7     N Y N 16  
A C5     C Y N 17  
A C6     C Y N 18  
A N6     N N N 19  
A N1     N Y N 20  
A C2     C Y N 21  
A N3     N Y N 22  
A C4     C Y N 23  
A HOP3   H N N 24  
A HOP2   H N N 25  
A "H5'"  H N N 26  
A "H5''" H N N 27  
A "H4'"  H N N 28  
A "H3'"  H N N 29  
A "HO3'" H N N 30  
A "H2'"  H N N 31  
A "HO2'" H N N 32  
A "H1'"  H N N 33  
A H8     H N N 34  
A H61    H N N 35  
A H62    H N N 36  
A H2     H N N 37  
C OP3    O N N 38  
C P      P N N 39  
C OP1    O N N 40  
C OP2    O N N 41  
C "O5'"  O N N 42  
C "C5'"  C N N 43  
C "C4'"  C N R 44  
C "O4'"  O N N 45  
C "C3'"  C N S 46  
C "O3'"  O N N 47  
C "C2'"  C N R 48  
C "O2'"  O N N 49  
C "C1'"  C N R 50  
C N1     N N N 51  
C C2     C N N 52  
C O2     O N N 53  
C N3     N N N 54  
C C4     C N N 55  
C N4     N N N 56  
C C5     C N N 57  
C C6     C N N 58  
C HOP3   H N N 59  
C HOP2   H N N 60  
C "H5'"  H N N 61  
C "H5''" H N N 62  
C "H4'"  H N N 63  
C "H3'"  H N N 64  
C "HO3'" H N N 65  
C "H2'"  H N N 66  
C "HO2'" H N N 67  
C "H1'"  H N N 68  
C H41    H N N 69  
C H42    H N N 70  
C H5     H N N 71  
C H6     H N N 72  
G OP3    O N N 73  
G P      P N N 74  
G OP1    O N N 75  
G OP2    O N N 76  
G "O5'"  O N N 77  
G "C5'"  C N N 78  
G "C4'"  C N R 79  
G "O4'"  O N N 80  
G "C3'"  C N S 81  
G "O3'"  O N N 82  
G "C2'"  C N R 83  
G "O2'"  O N N 84  
G "C1'"  C N R 85  
G N9     N Y N 86  
G C8     C Y N 87  
G N7     N Y N 88  
G C5     C Y N 89  
G C6     C N N 90  
G O6     O N N 91  
G N1     N N N 92  
G C2     C N N 93  
G N2     N N N 94  
G N3     N N N 95  
G C4     C Y N 96  
G HOP3   H N N 97  
G HOP2   H N N 98  
G "H5'"  H N N 99  
G "H5''" H N N 100 
G "H4'"  H N N 101 
G "H3'"  H N N 102 
G "HO3'" H N N 103 
G "H2'"  H N N 104 
G "HO2'" H N N 105 
G "H1'"  H N N 106 
G H8     H N N 107 
G H1     H N N 108 
G H21    H N N 109 
G H22    H N N 110 
U OP3    O N N 111 
U P      P N N 112 
U OP1    O N N 113 
U OP2    O N N 114 
U "O5'"  O N N 115 
U "C5'"  C N N 116 
U "C4'"  C N R 117 
U "O4'"  O N N 118 
U "C3'"  C N S 119 
U "O3'"  O N N 120 
U "C2'"  C N R 121 
U "O2'"  O N N 122 
U "C1'"  C N R 123 
U N1     N N N 124 
U C2     C N N 125 
U O2     O N N 126 
U N3     N N N 127 
U C4     C N N 128 
U O4     O N N 129 
U C5     C N N 130 
U C6     C N N 131 
U HOP3   H N N 132 
U HOP2   H N N 133 
U "H5'"  H N N 134 
U "H5''" H N N 135 
U "H4'"  H N N 136 
U "H3'"  H N N 137 
U "HO3'" H N N 138 
U "H2'"  H N N 139 
U "HO2'" H N N 140 
U "H1'"  H N N 141 
U H3     H N N 142 
U H5     H N N 143 
U H6     H N N 144 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A OP3   P      sing N N 1   
A OP3   HOP3   sing N N 2   
A P     OP1    doub N N 3   
A P     OP2    sing N N 4   
A P     "O5'"  sing N N 5   
A OP2   HOP2   sing N N 6   
A "O5'" "C5'"  sing N N 7   
A "C5'" "C4'"  sing N N 8   
A "C5'" "H5'"  sing N N 9   
A "C5'" "H5''" sing N N 10  
A "C4'" "O4'"  sing N N 11  
A "C4'" "C3'"  sing N N 12  
A "C4'" "H4'"  sing N N 13  
A "O4'" "C1'"  sing N N 14  
A "C3'" "O3'"  sing N N 15  
A "C3'" "C2'"  sing N N 16  
A "C3'" "H3'"  sing N N 17  
A "O3'" "HO3'" sing N N 18  
A "C2'" "O2'"  sing N N 19  
A "C2'" "C1'"  sing N N 20  
A "C2'" "H2'"  sing N N 21  
A "O2'" "HO2'" sing N N 22  
A "C1'" N9     sing N N 23  
A "C1'" "H1'"  sing N N 24  
A N9    C8     sing Y N 25  
A N9    C4     sing Y N 26  
A C8    N7     doub Y N 27  
A C8    H8     sing N N 28  
A N7    C5     sing Y N 29  
A C5    C6     sing Y N 30  
A C5    C4     doub Y N 31  
A C6    N6     sing N N 32  
A C6    N1     doub Y N 33  
A N6    H61    sing N N 34  
A N6    H62    sing N N 35  
A N1    C2     sing Y N 36  
A C2    N3     doub Y N 37  
A C2    H2     sing N N 38  
A N3    C4     sing Y N 39  
C OP3   P      sing N N 40  
C OP3   HOP3   sing N N 41  
C P     OP1    doub N N 42  
C P     OP2    sing N N 43  
C P     "O5'"  sing N N 44  
C OP2   HOP2   sing N N 45  
C "O5'" "C5'"  sing N N 46  
C "C5'" "C4'"  sing N N 47  
C "C5'" "H5'"  sing N N 48  
C "C5'" "H5''" sing N N 49  
C "C4'" "O4'"  sing N N 50  
C "C4'" "C3'"  sing N N 51  
C "C4'" "H4'"  sing N N 52  
C "O4'" "C1'"  sing N N 53  
C "C3'" "O3'"  sing N N 54  
C "C3'" "C2'"  sing N N 55  
C "C3'" "H3'"  sing N N 56  
C "O3'" "HO3'" sing N N 57  
C "C2'" "O2'"  sing N N 58  
C "C2'" "C1'"  sing N N 59  
C "C2'" "H2'"  sing N N 60  
C "O2'" "HO2'" sing N N 61  
C "C1'" N1     sing N N 62  
C "C1'" "H1'"  sing N N 63  
C N1    C2     sing N N 64  
C N1    C6     sing N N 65  
C C2    O2     doub N N 66  
C C2    N3     sing N N 67  
C N3    C4     doub N N 68  
C C4    N4     sing N N 69  
C C4    C5     sing N N 70  
C N4    H41    sing N N 71  
C N4    H42    sing N N 72  
C C5    C6     doub N N 73  
C C5    H5     sing N N 74  
C C6    H6     sing N N 75  
G OP3   P      sing N N 76  
G OP3   HOP3   sing N N 77  
G P     OP1    doub N N 78  
G P     OP2    sing N N 79  
G P     "O5'"  sing N N 80  
G OP2   HOP2   sing N N 81  
G "O5'" "C5'"  sing N N 82  
G "C5'" "C4'"  sing N N 83  
G "C5'" "H5'"  sing N N 84  
G "C5'" "H5''" sing N N 85  
G "C4'" "O4'"  sing N N 86  
G "C4'" "C3'"  sing N N 87  
G "C4'" "H4'"  sing N N 88  
G "O4'" "C1'"  sing N N 89  
G "C3'" "O3'"  sing N N 90  
G "C3'" "C2'"  sing N N 91  
G "C3'" "H3'"  sing N N 92  
G "O3'" "HO3'" sing N N 93  
G "C2'" "O2'"  sing N N 94  
G "C2'" "C1'"  sing N N 95  
G "C2'" "H2'"  sing N N 96  
G "O2'" "HO2'" sing N N 97  
G "C1'" N9     sing N N 98  
G "C1'" "H1'"  sing N N 99  
G N9    C8     sing Y N 100 
G N9    C4     sing Y N 101 
G C8    N7     doub Y N 102 
G C8    H8     sing N N 103 
G N7    C5     sing Y N 104 
G C5    C6     sing N N 105 
G C5    C4     doub Y N 106 
G C6    O6     doub N N 107 
G C6    N1     sing N N 108 
G N1    C2     sing N N 109 
G N1    H1     sing N N 110 
G C2    N2     sing N N 111 
G C2    N3     doub N N 112 
G N2    H21    sing N N 113 
G N2    H22    sing N N 114 
G N3    C4     sing N N 115 
U OP3   P      sing N N 116 
U OP3   HOP3   sing N N 117 
U P     OP1    doub N N 118 
U P     OP2    sing N N 119 
U P     "O5'"  sing N N 120 
U OP2   HOP2   sing N N 121 
U "O5'" "C5'"  sing N N 122 
U "C5'" "C4'"  sing N N 123 
U "C5'" "H5'"  sing N N 124 
U "C5'" "H5''" sing N N 125 
U "C4'" "O4'"  sing N N 126 
U "C4'" "C3'"  sing N N 127 
U "C4'" "H4'"  sing N N 128 
U "O4'" "C1'"  sing N N 129 
U "C3'" "O3'"  sing N N 130 
U "C3'" "C2'"  sing N N 131 
U "C3'" "H3'"  sing N N 132 
U "O3'" "HO3'" sing N N 133 
U "C2'" "O2'"  sing N N 134 
U "C2'" "C1'"  sing N N 135 
U "C2'" "H2'"  sing N N 136 
U "O2'" "HO2'" sing N N 137 
U "C1'" N1     sing N N 138 
U "C1'" "H1'"  sing N N 139 
U N1    C2     sing N N 140 
U N1    C6     sing N N 141 
U C2    O2     doub N N 142 
U C2    N3     sing N N 143 
U N3    C4     sing N N 144 
U N3    H3     sing N N 145 
U C4    O4     doub N N 146 
U C4    C5     sing N N 147 
U C5    C6     doub N N 148 
U C5    H5     sing N N 149 
U C6    H6     sing N N 150 
# 
_em_ctf_correction.id                       1 
_em_ctf_correction.details                  'phase reversal' 
_em_ctf_correction.type                     . 
_em_ctf_correction.em_image_processing_id   ? 
# 
_em_image_processing.id                   1 
_em_image_processing.image_recording_id   1 
_em_image_processing.details              ? 
# 
_em_image_recording.details                       'Kodak SO-163' 
_em_image_recording.id                            1 
_em_image_recording.avg_electron_dose_per_image   20 
_em_image_recording.film_or_detector_model        'GENERIC FILM' 
_em_image_recording.imaging_id                    1 
_em_image_recording.detector_mode                 ? 
_em_image_recording.average_exposure_time         ? 
_em_image_recording.num_diffraction_images        ? 
_em_image_recording.num_grids_imaged              ? 
_em_image_recording.num_real_images               ? 
# 
loop_
_em_software.id 
_em_software.name 
_em_software.version 
_em_software.category 
_em_software.details 
_em_software.image_processing_id 
1 IMAGIC ?   RECONSTRUCTION  ? 1 
2 Amira  2.3 'MODEL FITTING' ? ? 
# 
_em_specimen.experiment_id           1 
_em_specimen.id                      1 
_em_specimen.concentration           ? 
_em_specimen.vitrification_applied   YES 
_em_specimen.staining_applied        NO 
_em_specimen.embedding_applied       NO 
_em_specimen.shadowing_applied       NO 
_em_specimen.details                 ? 
# 
loop_
_pdbx_coordinate_model.asym_id 
_pdbx_coordinate_model.type 
A 'P ATOMS ONLY' 
B 'P ATOMS ONLY' 
C 'P ATOMS ONLY' 
D 'P ATOMS ONLY' 
E 'P ATOMS ONLY' 
# 
loop_
_pdbx_initial_refinement_model.id 
_pdbx_initial_refinement_model.type 
_pdbx_initial_refinement_model.source_name 
_pdbx_initial_refinement_model.accession_code 
1 'experimental model' PDB 1P5P 
2 'experimental model' PDB 1F84 
3 'experimental model' PDB 1KH6 
4 'experimental model' PDB 1KP7 
# 
_atom_sites.entry_id                    2AGN 
_atom_sites.fract_transf_matrix[1][1]   1.000000 
_atom_sites.fract_transf_matrix[1][2]   0.000000 
_atom_sites.fract_transf_matrix[1][3]   0.000000 
_atom_sites.fract_transf_matrix[2][1]   0.000000 
_atom_sites.fract_transf_matrix[2][2]   1.000000 
_atom_sites.fract_transf_matrix[2][3]   0.000000 
_atom_sites.fract_transf_matrix[3][1]   0.000000 
_atom_sites.fract_transf_matrix[3][2]   0.000000 
_atom_sites.fract_transf_matrix[3][3]   1.000000 
_atom_sites.fract_transf_vector[1]      0.00000 
_atom_sites.fract_transf_vector[2]      0.00000 
_atom_sites.fract_transf_vector[3]      0.00000 
# 
_atom_type.symbol   P 
# 
loop_