data_2AGQ # _entry.id 2AGQ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.376 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2AGQ pdb_00002agq 10.2210/pdb2agq/pdb NDB PD0699 ? ? RCSB RCSB033873 ? ? WWPDB D_1000033873 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1JX4 . unspecified PDB 1JXL . unspecified # _pdbx_database_status.entry_id 2AGQ _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2005-07-27 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ling, H.' 1 'Yang, W.' 2 # _citation.id primary _citation.title 'Fidelity of Dpo4: effect of metal ions, nucleotide selection and pyrophosphorolysis.' _citation.journal_abbrev 'Embo J.' _citation.journal_volume 24 _citation.page_first 2957 _citation.page_last 2967 _citation.year 2005 _citation.journal_id_ASTM EMJODG _citation.country UK _citation.journal_id_ISSN 0261-4189 _citation.journal_id_CSD 0897 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16107880 _citation.pdbx_database_id_DOI 10.1038/sj.emboj.7600786 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Vaisman, A.' 1 ? primary 'Ling, H.' 2 ? primary 'Woodgate, R.' 3 ? primary 'Yang, W.' 4 ? # _cell.entry_id 2AGQ _cell.length_a 98.101 _cell.length_b 103.009 _cell.length_c 52.399 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2AGQ _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*GP*GP*CP*TP*AP*CP*AP*GP*GP*AP*CP*TP*(DOC))-3'" 3960.600 1 ? ? ? ? 2 polymer syn "5'-D(*TP*CP*AP*TP*GP*AP*GP*TP*CP*CP*TP*GP*TP*AP*GP*CP*C)-3'" 5178.359 1 ? ? ? ? 3 polymer man 'DNA polymerase IV' 39019.523 1 2.7.7.7 ? ? ? 4 non-polymer syn 'CALCIUM ION' 40.078 2 ? ? ? ? 5 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 6 non-polymer syn ;2'-DEOXYADENOSINE 5'-TRIPHOSPHATE ; 491.182 1 ? ? ? ? 7 water nat water 18.015 160 ? ? ? ? # _entity_name_com.entity_id 3 _entity_name_com.name 'Pol IV' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no yes '(DG)(DG)(DC)(DT)(DA)(DC)(DA)(DG)(DG)(DA)(DC)(DT)(DOC)' GGCTACAGGACTC B ? 2 polydeoxyribonucleotide no no '(DT)(DC)(DA)(DT)(DG)(DA)(DG)(DT)(DC)(DC)(DT)(DG)(DT)(DA)(DG)(DC)(DC)' TCATGAGTCCTGTAGCC C ? 3 'polypeptide(L)' no no ;MIVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILPNAVYLPMRKEV YQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAADMAKP NGIKVIDDEEVKRLIRELDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTR VRKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQ KILEEDERKIRRIGVRFSKFI ; ;MIVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILPNAVYLPMRKEV YQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAADMAKP NGIKVIDDEEVKRLIRELDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTR VRKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQ KILEEDERKIRRIGVRFSKFI ; A ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DG n 1 3 DC n 1 4 DT n 1 5 DA n 1 6 DC n 1 7 DA n 1 8 DG n 1 9 DG n 1 10 DA n 1 11 DC n 1 12 DT n 1 13 DOC n 2 1 DT n 2 2 DC n 2 3 DA n 2 4 DT n 2 5 DG n 2 6 DA n 2 7 DG n 2 8 DT n 2 9 DC n 2 10 DC n 2 11 DT n 2 12 DG n 2 13 DT n 2 14 DA n 2 15 DG n 2 16 DC n 2 17 DC n 3 1 MET n 3 2 ILE n 3 3 VAL n 3 4 LEU n 3 5 PHE n 3 6 VAL n 3 7 ASP n 3 8 PHE n 3 9 ASP n 3 10 TYR n 3 11 PHE n 3 12 TYR n 3 13 ALA n 3 14 GLN n 3 15 VAL n 3 16 GLU n 3 17 GLU n 3 18 VAL n 3 19 LEU n 3 20 ASN n 3 21 PRO n 3 22 SER n 3 23 LEU n 3 24 LYS n 3 25 GLY n 3 26 LYS n 3 27 PRO n 3 28 VAL n 3 29 VAL n 3 30 VAL n 3 31 CYS n 3 32 VAL n 3 33 PHE n 3 34 SER n 3 35 GLY n 3 36 ARG n 3 37 PHE n 3 38 GLU n 3 39 ASP n 3 40 SER n 3 41 GLY n 3 42 ALA n 3 43 VAL n 3 44 ALA n 3 45 THR n 3 46 ALA n 3 47 ASN n 3 48 TYR n 3 49 GLU n 3 50 ALA n 3 51 ARG n 3 52 LYS n 3 53 PHE n 3 54 GLY n 3 55 VAL n 3 56 LYS n 3 57 ALA n 3 58 GLY n 3 59 ILE n 3 60 PRO n 3 61 ILE n 3 62 VAL n 3 63 GLU n 3 64 ALA n 3 65 LYS n 3 66 LYS n 3 67 ILE n 3 68 LEU n 3 69 PRO n 3 70 ASN n 3 71 ALA n 3 72 VAL n 3 73 TYR n 3 74 LEU n 3 75 PRO n 3 76 MET n 3 77 ARG n 3 78 LYS n 3 79 GLU n 3 80 VAL n 3 81 TYR n 3 82 GLN n 3 83 GLN n 3 84 VAL n 3 85 SER n 3 86 SER n 3 87 ARG n 3 88 ILE n 3 89 MET n 3 90 ASN n 3 91 LEU n 3 92 LEU n 3 93 ARG n 3 94 GLU n 3 95 TYR n 3 96 SER n 3 97 GLU n 3 98 LYS n 3 99 ILE n 3 100 GLU n 3 101 ILE n 3 102 ALA n 3 103 SER n 3 104 ILE n 3 105 ASP n 3 106 GLU n 3 107 ALA n 3 108 TYR n 3 109 LEU n 3 110 ASP n 3 111 ILE n 3 112 SER n 3 113 ASP n 3 114 LYS n 3 115 VAL n 3 116 ARG n 3 117 ASP n 3 118 TYR n 3 119 ARG n 3 120 GLU n 3 121 ALA n 3 122 TYR n 3 123 ASN n 3 124 LEU n 3 125 GLY n 3 126 LEU n 3 127 GLU n 3 128 ILE n 3 129 LYS n 3 130 ASN n 3 131 LYS n 3 132 ILE n 3 133 LEU n 3 134 GLU n 3 135 LYS n 3 136 GLU n 3 137 LYS n 3 138 ILE n 3 139 THR n 3 140 VAL n 3 141 THR n 3 142 VAL n 3 143 GLY n 3 144 ILE n 3 145 SER n 3 146 LYS n 3 147 ASN n 3 148 LYS n 3 149 VAL n 3 150 PHE n 3 151 ALA n 3 152 LYS n 3 153 ILE n 3 154 ALA n 3 155 ALA n 3 156 ASP n 3 157 MET n 3 158 ALA n 3 159 LYS n 3 160 PRO n 3 161 ASN n 3 162 GLY n 3 163 ILE n 3 164 LYS n 3 165 VAL n 3 166 ILE n 3 167 ASP n 3 168 ASP n 3 169 GLU n 3 170 GLU n 3 171 VAL n 3 172 LYS n 3 173 ARG n 3 174 LEU n 3 175 ILE n 3 176 ARG n 3 177 GLU n 3 178 LEU n 3 179 ASP n 3 180 ILE n 3 181 ALA n 3 182 ASP n 3 183 VAL n 3 184 PRO n 3 185 GLY n 3 186 ILE n 3 187 GLY n 3 188 ASN n 3 189 ILE n 3 190 THR n 3 191 ALA n 3 192 GLU n 3 193 LYS n 3 194 LEU n 3 195 LYS n 3 196 LYS n 3 197 LEU n 3 198 GLY n 3 199 ILE n 3 200 ASN n 3 201 LYS n 3 202 LEU n 3 203 VAL n 3 204 ASP n 3 205 THR n 3 206 LEU n 3 207 SER n 3 208 ILE n 3 209 GLU n 3 210 PHE n 3 211 ASP n 3 212 LYS n 3 213 LEU n 3 214 LYS n 3 215 GLY n 3 216 MET n 3 217 ILE n 3 218 GLY n 3 219 GLU n 3 220 ALA n 3 221 LYS n 3 222 ALA n 3 223 LYS n 3 224 TYR n 3 225 LEU n 3 226 ILE n 3 227 SER n 3 228 LEU n 3 229 ALA n 3 230 ARG n 3 231 ASP n 3 232 GLU n 3 233 TYR n 3 234 ASN n 3 235 GLU n 3 236 PRO n 3 237 ILE n 3 238 ARG n 3 239 THR n 3 240 ARG n 3 241 VAL n 3 242 ARG n 3 243 LYS n 3 244 SER n 3 245 ILE n 3 246 GLY n 3 247 ARG n 3 248 ILE n 3 249 VAL n 3 250 THR n 3 251 MET n 3 252 LYS n 3 253 ARG n 3 254 ASN n 3 255 SER n 3 256 ARG n 3 257 ASN n 3 258 LEU n 3 259 GLU n 3 260 GLU n 3 261 ILE n 3 262 LYS n 3 263 PRO n 3 264 TYR n 3 265 LEU n 3 266 PHE n 3 267 ARG n 3 268 ALA n 3 269 ILE n 3 270 GLU n 3 271 GLU n 3 272 SER n 3 273 TYR n 3 274 TYR n 3 275 LYS n 3 276 LEU n 3 277 ASP n 3 278 LYS n 3 279 ARG n 3 280 ILE n 3 281 PRO n 3 282 LYS n 3 283 ALA n 3 284 ILE n 3 285 HIS n 3 286 VAL n 3 287 VAL n 3 288 ALA n 3 289 VAL n 3 290 THR n 3 291 GLU n 3 292 ASP n 3 293 LEU n 3 294 ASP n 3 295 ILE n 3 296 VAL n 3 297 SER n 3 298 ARG n 3 299 GLY n 3 300 ARG n 3 301 THR n 3 302 PHE n 3 303 PRO n 3 304 HIS n 3 305 GLY n 3 306 ILE n 3 307 SER n 3 308 LYS n 3 309 GLU n 3 310 THR n 3 311 ALA n 3 312 TYR n 3 313 SER n 3 314 GLU n 3 315 SER n 3 316 VAL n 3 317 LYS n 3 318 LEU n 3 319 LEU n 3 320 GLN n 3 321 LYS n 3 322 ILE n 3 323 LEU n 3 324 GLU n 3 325 GLU n 3 326 ASP n 3 327 GLU n 3 328 ARG n 3 329 LYS n 3 330 ILE n 3 331 ARG n 3 332 ARG n 3 333 ILE n 3 334 GLY n 3 335 VAL n 3 336 ARG n 3 337 PHE n 3 338 SER n 3 339 LYS n 3 340 PHE n 3 341 ILE n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Sulfolobus _entity_src_gen.pdbx_gene_src_gene 'dbh, dpo4' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Sulfolobus solfataricus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2287 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 (DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET22b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? ? ? ? 'Chemically synthesized' 2 1 sample ? ? ? ? ? 'Chemically synthesized' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP DPO42_SULSO Q97W02 3 ;MIVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILPNAVYLPMRKEV YQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAADMAKP NGIKVIDDEEVKRLIRELDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTR VRKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQ KILEEDERKIRRIGVRFSKFI ; 1 ? 2 PDB 2AGQ 2AGQ 1 ? ? ? 3 PDB 2AGQ 2AGQ 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2AGQ A 1 ? 341 ? Q97W02 1 ? 341 ? 1 341 2 2 2AGQ B 1 ? 13 ? 2AGQ 1 ? 13 ? 1 13 3 3 2AGQ C 1 ? 17 ? 2AGQ 1 ? 17 ? 1 17 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DOC 'DNA linking' n "2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O6 P' 291.198 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 DTP non-polymer . ;2'-DEOXYADENOSINE 5'-TRIPHOSPHATE ; ? 'C10 H16 N5 O12 P3' 491.182 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2AGQ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.75 _exptl_crystal.density_percent_sol 55.25 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details 'pH 7.0' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 95 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date 2004-12-29 _diffrn_detector.details MIRROR # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'OSMIC FOCUSING MIRROR' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 2AGQ _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.000 _reflns.d_resolution_high 2.100 _reflns.number_obs 30510 _reflns.number_all ? _reflns.percent_possible_obs 95.1 _reflns.pdbx_Rmerge_I_obs 0.06 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 13.9 _reflns.B_iso_Wilson_estimate 29.5 _reflns.pdbx_redundancy 2.44 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.10 _reflns_shell.d_res_low 2.14 _reflns_shell.percent_possible_all 87.6 _reflns_shell.Rmerge_I_obs 0.406 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.49 _reflns_shell.pdbx_redundancy 2.30 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2AGQ _refine.ls_number_reflns_obs 30510 _refine.ls_number_reflns_all 33308 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 817311.24 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 26.79 _refine.ls_d_res_high 2.10 _refine.ls_percent_reflns_obs 91.6 _refine.ls_R_factor_obs 0.227 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.227 _refine.ls_R_factor_R_free 0.254 _refine.ls_R_factor_R_free_error 0.007 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.9 _refine.ls_number_reflns_R_free 1438 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 45.1 _refine.aniso_B[1][1] 9.93 _refine.aniso_B[2][2] -4.44 _refine.aniso_B[3][3] -5.49 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.366055 _refine.solvent_model_param_bsol 48.6883 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1JX4' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'ENGH & HUBER' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2AGQ _refine_analyze.Luzzati_coordinate_error_obs 0.31 _refine_analyze.Luzzati_sigma_a_obs 0.33 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.36 _refine_analyze.Luzzati_sigma_a_free 0.40 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2744 _refine_hist.pdbx_number_atoms_nucleic_acid 606 _refine_hist.pdbx_number_atoms_ligand 33 _refine_hist.number_atoms_solvent 160 _refine_hist.number_atoms_total 3543 _refine_hist.d_res_high 2.10 _refine_hist.d_res_low 26.79 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.007 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.2 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 20.9 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.94 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.37 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 2.23 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 2.09 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 3.20 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.10 _refine_ls_shell.d_res_low 2.23 _refine_ls_shell.number_reflns_R_work 4056 _refine_ls_shell.R_factor_R_work 0.324 _refine_ls_shell.percent_reflns_obs 81.8 _refine_ls_shell.R_factor_R_free 0.382 _refine_ls_shell.R_factor_R_free_error 0.028 _refine_ls_shell.percent_reflns_R_free 4.4 _refine_ls_shell.number_reflns_R_free 188 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 dna-rna_rep.param dna-rna.top 'X-RAY DIFFRACTION' 3 ion.param ion.top 'X-RAY DIFFRACTION' 4 datp.param datp.top 'X-RAY DIFFRACTION' 5 water_rep.param water.top 'X-RAY DIFFRACTION' # _struct.entry_id 2AGQ _struct.title 'Fidelity of Dpo4: effect of metal ions, nucleotide selection and pyrophosphorolysis' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2AGQ _struct_keywords.pdbx_keywords TRANSFERASE/DNA _struct_keywords.text 'base stacking, fidelity, metal ion, mismatch, pyrophosphorolysis, TRANSFERASE-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 4 ? G N N 6 ? H N N 7 ? I N N 7 ? J N N 7 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 TYR C 10 ? ASN C 20 ? TYR A 10 ASN A 20 1 ? 11 HELX_P HELX_P2 2 PRO C 21 ? LYS C 24 ? PRO A 21 LYS A 24 5 ? 4 HELX_P HELX_P3 3 ASN C 47 ? LYS C 52 ? ASN A 47 LYS A 52 1 ? 6 HELX_P HELX_P4 4 PRO C 60 ? LEU C 68 ? PRO A 60 LEU A 68 1 ? 9 HELX_P HELX_P5 5 ARG C 77 ? GLU C 94 ? ARG A 77 GLU A 94 1 ? 18 HELX_P HELX_P6 6 ASP C 117 ? LYS C 137 ? ASP A 117 LYS A 137 1 ? 21 HELX_P HELX_P7 7 ASN C 147 ? LYS C 159 ? ASN A 147 LYS A 159 1 ? 13 HELX_P HELX_P8 8 ASP C 167 ? LEU C 178 ? ASP A 167 LEU A 178 1 ? 12 HELX_P HELX_P9 9 ASP C 179 ? VAL C 183 ? ASP A 179 VAL A 183 5 ? 5 HELX_P HELX_P10 10 GLY C 187 ? LYS C 196 ? GLY A 187 LYS A 196 1 ? 10 HELX_P HELX_P11 11 LYS C 201 ? SER C 207 ? LYS A 201 SER A 207 5 ? 7 HELX_P HELX_P12 12 GLU C 209 ? GLY C 218 ? GLU A 209 GLY A 218 1 ? 10 HELX_P HELX_P13 13 GLY C 218 ? ARG C 230 ? GLY A 218 ARG A 230 1 ? 13 HELX_P HELX_P14 14 ASN C 257 ? ASP C 277 ? ASN A 257 ASP A 277 1 ? 21 HELX_P HELX_P15 15 SER C 307 ? ASP C 326 ? SER A 307 ASP A 326 1 ? 20 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DT 12 "O3'" ? ? ? 1_555 A DOC 13 P ? ? B DT 12 B DOC 13 1_555 ? ? ? ? ? ? ? 1.608 ? ? metalc1 metalc ? ? A DOC 13 OP1 ? ? ? 1_555 E MG . MG ? ? B DOC 13 A MG 4002 1_555 ? ? ? ? ? ? ? 2.642 ? ? metalc2 metalc ? ? H HOH . O ? ? ? 1_555 F CA . CA ? ? B HOH 28 A CA 4003 1_555 ? ? ? ? ? ? ? 2.587 ? ? metalc3 metalc ? ? C ASP 7 OD1 ? ? ? 1_555 D CA . CA ? ? A ASP 7 A CA 4001 1_555 ? ? ? ? ? ? ? 2.231 ? ? metalc4 metalc ? ? C ASP 7 OD2 ? ? ? 1_555 E MG . MG ? ? A ASP 7 A MG 4002 1_555 ? ? ? ? ? ? ? 2.437 ? ? metalc5 metalc ? ? C PHE 8 O ? ? ? 1_555 D CA . CA ? ? A PHE 8 A CA 4001 1_555 ? ? ? ? ? ? ? 2.306 ? ? metalc6 metalc ? ? C ASP 105 OD2 ? ? ? 1_555 D CA . CA ? ? A ASP 105 A CA 4001 1_555 ? ? ? ? ? ? ? 2.158 ? ? metalc7 metalc ? ? C GLU 106 OE2 ? ? ? 1_555 E MG . MG ? ? A GLU 106 A MG 4002 1_555 ? ? ? ? ? ? ? 2.100 ? ? metalc8 metalc ? ? C ALA 181 O ? ? ? 1_555 F CA . CA ? ? A ALA 181 A CA 4003 1_555 ? ? ? ? ? ? ? 2.311 ? ? metalc9 metalc ? ? C ILE 186 O ? ? ? 1_555 F CA . CA ? ? A ILE 186 A CA 4003 1_555 ? ? ? ? ? ? ? 2.510 ? ? metalc10 metalc ? ? G DTP . O1G ? ? ? 1_555 D CA . CA ? ? A DTP 1814 A CA 4001 1_555 ? ? ? ? ? ? ? 2.659 ? ? metalc11 metalc ? ? G DTP . O2B ? ? ? 1_555 D CA . CA ? ? A DTP 1814 A CA 4001 1_555 ? ? ? ? ? ? ? 2.563 ? ? metalc12 metalc ? ? G DTP . O3B ? ? ? 1_555 D CA . CA ? ? A DTP 1814 A CA 4001 1_555 ? ? ? ? ? ? ? 2.835 ? ? metalc13 metalc ? ? G DTP . O1A ? ? ? 1_555 D CA . CA ? ? A DTP 1814 A CA 4001 1_555 ? ? ? ? ? ? ? 2.294 ? ? metalc14 metalc ? ? E MG . MG ? ? ? 1_555 J HOH . O ? ? A MG 4002 A HOH 4004 1_555 ? ? ? ? ? ? ? 2.305 ? ? metalc15 metalc ? ? E MG . MG ? ? ? 1_555 J HOH . O ? ? A MG 4002 A HOH 4032 1_555 ? ? ? ? ? ? ? 2.081 ? ? metalc16 metalc ? ? E MG . MG ? ? ? 1_555 J HOH . O ? ? A MG 4002 A HOH 4100 1_555 ? ? ? ? ? ? ? 2.159 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 17 N3 ? ? B DG 1 C DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 17 O2 ? ? B DG 1 C DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 17 N4 ? ? B DG 1 C DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 16 N3 ? ? B DG 2 C DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 16 O2 ? ? B DG 2 C DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 16 N4 ? ? B DG 2 C DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 15 N1 ? ? B DC 3 C DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 15 O6 ? ? B DC 3 C DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 15 N2 ? ? B DC 3 C DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 14 N1 ? ? B DT 4 C DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 14 N6 ? ? B DT 4 C DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 13 N3 ? ? B DA 5 C DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 13 O4 ? ? B DA 5 C DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B DG 12 N1 ? ? B DC 6 C DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B DG 12 O6 ? ? B DC 6 C DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B DG 12 N2 ? ? B DC 6 C DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DA 7 N1 ? ? ? 1_555 B DT 11 N3 ? ? B DA 7 C DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DA 7 N6 ? ? ? 1_555 B DT 11 O4 ? ? B DA 7 C DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DG 8 N1 ? ? ? 1_555 B DC 10 N3 ? ? B DG 8 C DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DG 8 N2 ? ? ? 1_555 B DC 10 O2 ? ? B DG 8 C DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 8 O6 ? ? ? 1_555 B DC 10 N4 ? ? B DG 8 C DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 9 N1 ? ? ? 1_555 B DC 9 N3 ? ? B DG 9 C DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 9 N2 ? ? ? 1_555 B DC 9 O2 ? ? B DG 9 C DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 9 O6 ? ? ? 1_555 B DC 9 N4 ? ? B DG 9 C DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DA 10 N1 ? ? ? 1_555 B DT 8 N3 ? ? B DA 10 C DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DA 10 N6 ? ? ? 1_555 B DT 8 O4 ? ? B DA 10 C DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 7 N1 ? ? B DC 11 C DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 7 O6 ? ? B DC 11 C DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 7 N2 ? ? B DC 11 C DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DT 12 N3 ? ? ? 1_555 B DA 6 N1 ? ? B DT 12 C DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DT 12 O4 ? ? ? 1_555 B DA 6 N6 ? ? B DT 12 C DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DOC 13 N3 ? ? ? 1_555 B DG 5 N1 ? ? B DOC 13 C DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DOC 13 N4 ? ? ? 1_555 B DG 5 O6 ? ? B DOC 13 C DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DOC 13 O2 ? ? ? 1_555 B DG 5 N2 ? ? B DOC 13 C DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LYS _struct_mon_prot_cis.label_seq_id 159 _struct_mon_prot_cis.label_asym_id C _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LYS _struct_mon_prot_cis.auth_seq_id 159 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 160 _struct_mon_prot_cis.pdbx_label_asym_id_2 C _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 160 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 0.18 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 3 ? C ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? parallel B 1 2 ? anti-parallel B 2 3 ? parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE C 99 ? SER C 103 ? ILE A 99 SER A 103 A 2 GLU C 106 ? ASP C 110 ? GLU A 106 ASP A 110 A 3 VAL C 3 ? PHE C 8 ? VAL A 3 PHE A 8 A 4 VAL C 140 ? SER C 145 ? VAL A 140 SER A 145 A 5 ILE C 163 ? VAL C 165 ? ILE A 163 VAL A 165 B 1 GLY C 41 ? ALA C 46 ? GLY A 41 ALA A 46 B 2 VAL C 28 ? PHE C 33 ? VAL A 28 PHE A 33 B 3 VAL C 72 ? PRO C 75 ? VAL A 72 PRO A 75 C 1 SER C 244 ? SER C 255 ? SER A 244 SER A 255 C 2 ILE C 330 ? PHE C 340 ? ILE A 330 PHE A 340 C 3 PRO C 281 ? THR C 290 ? PRO A 281 THR A 290 C 4 ILE C 295 ? THR C 301 ? ILE A 295 THR A 301 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLU C 100 ? N GLU A 100 O TYR C 108 ? O TYR A 108 A 2 3 O ALA C 107 ? O ALA A 107 N VAL C 6 ? N VAL A 6 A 3 4 N PHE C 5 ? N PHE A 5 O GLY C 143 ? O GLY A 143 A 4 5 N ILE C 144 ? N ILE A 144 O LYS C 164 ? O LYS A 164 B 1 2 O ALA C 42 ? O ALA A 42 N VAL C 32 ? N VAL A 32 B 2 3 N CYS C 31 ? N CYS A 31 O LEU C 74 ? O LEU A 74 C 1 2 N ILE C 245 ? N ILE A 245 O PHE C 337 ? O PHE A 337 C 2 3 O ARG C 331 ? O ARG A 331 N VAL C 289 ? N VAL A 289 C 3 4 N VAL C 286 ? N VAL A 286 O ARG C 298 ? O ARG A 298 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CA 4001 ? 4 'BINDING SITE FOR RESIDUE CA A 4001' AC2 Software A MG 4002 ? 6 'BINDING SITE FOR RESIDUE MG A 4002' AC3 Software A CA 4003 ? 3 'BINDING SITE FOR RESIDUE CA A 4003' AC4 Software A DTP 1814 ? 21 'BINDING SITE FOR RESIDUE DTP A 1814' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 ASP C 7 ? ASP A 7 . ? 1_555 ? 2 AC1 4 PHE C 8 ? PHE A 8 . ? 1_555 ? 3 AC1 4 ASP C 105 ? ASP A 105 . ? 1_555 ? 4 AC1 4 DTP G . ? DTP A 1814 . ? 1_555 ? 5 AC2 6 ASP C 7 ? ASP A 7 . ? 1_555 ? 6 AC2 6 GLU C 106 ? GLU A 106 . ? 1_555 ? 7 AC2 6 HOH J . ? HOH A 4004 . ? 1_555 ? 8 AC2 6 HOH J . ? HOH A 4032 . ? 1_555 ? 9 AC2 6 HOH J . ? HOH A 4100 . ? 1_555 ? 10 AC2 6 DOC A 13 ? DOC B 13 . ? 1_555 ? 11 AC3 3 ALA C 181 ? ALA A 181 . ? 1_555 ? 12 AC3 3 ILE C 186 ? ILE A 186 . ? 1_555 ? 13 AC3 3 HOH H . ? HOH B 28 . ? 1_555 ? 14 AC4 21 ASP C 7 ? ASP A 7 . ? 1_555 ? 15 AC4 21 PHE C 8 ? PHE A 8 . ? 1_555 ? 16 AC4 21 ASP C 9 ? ASP A 9 . ? 1_555 ? 17 AC4 21 TYR C 10 ? TYR A 10 . ? 1_555 ? 18 AC4 21 PHE C 11 ? PHE A 11 . ? 1_555 ? 19 AC4 21 TYR C 12 ? TYR A 12 . ? 1_555 ? 20 AC4 21 ALA C 44 ? ALA A 44 . ? 1_555 ? 21 AC4 21 THR C 45 ? THR A 45 . ? 1_555 ? 22 AC4 21 TYR C 48 ? TYR A 48 . ? 1_555 ? 23 AC4 21 ARG C 51 ? ARG A 51 . ? 1_555 ? 24 AC4 21 ASP C 105 ? ASP A 105 . ? 1_555 ? 25 AC4 21 LYS C 159 ? LYS A 159 . ? 1_555 ? 26 AC4 21 CA D . ? CA A 4001 . ? 1_555 ? 27 AC4 21 HOH J . ? HOH A 4004 . ? 1_555 ? 28 AC4 21 HOH J . ? HOH A 4007 . ? 1_555 ? 29 AC4 21 HOH J . ? HOH A 4030 . ? 1_555 ? 30 AC4 21 HOH J . ? HOH A 4039 . ? 1_555 ? 31 AC4 21 HOH J . ? HOH A 4100 . ? 1_555 ? 32 AC4 21 DOC A 13 ? DOC B 13 . ? 1_555 ? 33 AC4 21 DT B 4 ? DT C 4 . ? 1_555 ? 34 AC4 21 DG B 5 ? DG C 5 . ? 1_555 ? # _database_PDB_matrix.entry_id 2AGQ _database_PDB_matrix.origx[1][1] 1.00000 _database_PDB_matrix.origx[1][2] 0.00000 _database_PDB_matrix.origx[1][3] 0.00000 _database_PDB_matrix.origx[2][1] 0.00000 _database_PDB_matrix.origx[2][2] 1.00000 _database_PDB_matrix.origx[2][3] 0.00000 _database_PDB_matrix.origx[3][1] 0.00000 _database_PDB_matrix.origx[3][2] 0.00000 _database_PDB_matrix.origx[3][3] 1.00000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2AGQ _atom_sites.fract_transf_matrix[1][1] 0.010194 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009708 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019084 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG G B . n A 1 2 DG 2 2 2 DG G B . n A 1 3 DC 3 3 3 DC C B . n A 1 4 DT 4 4 4 DT T B . n A 1 5 DA 5 5 5 DA A B . n A 1 6 DC 6 6 6 DC C B . n A 1 7 DA 7 7 7 DA A B . n A 1 8 DG 8 8 8 DG G B . n A 1 9 DG 9 9 9 DG G B . n A 1 10 DA 10 10 10 DA A B . n A 1 11 DC 11 11 11 DC C B . n A 1 12 DT 12 12 12 DT T B . n A 1 13 DOC 13 13 13 DOC DOC B . n B 2 1 DT 1 1 1 DT T C . n B 2 2 DC 2 2 2 DC C C . n B 2 3 DA 3 3 3 DA A C . n B 2 4 DT 4 4 4 DT T C . n B 2 5 DG 5 5 5 DG G C . n B 2 6 DA 6 6 6 DA A C . n B 2 7 DG 7 7 7 DG G C . n B 2 8 DT 8 8 8 DT T C . n B 2 9 DC 9 9 9 DC C C . n B 2 10 DC 10 10 10 DC C C . n B 2 11 DT 11 11 11 DT T C . n B 2 12 DG 12 12 12 DG G C . n B 2 13 DT 13 13 13 DT T C . n B 2 14 DA 14 14 14 DA A C . n B 2 15 DG 15 15 15 DG G C . n B 2 16 DC 16 16 16 DC C C . n B 2 17 DC 17 17 17 DC C C . n C 3 1 MET 1 1 1 MET MET A . n C 3 2 ILE 2 2 2 ILE ILE A . n C 3 3 VAL 3 3 3 VAL VAL A . n C 3 4 LEU 4 4 4 LEU LEU A . n C 3 5 PHE 5 5 5 PHE PHE A . n C 3 6 VAL 6 6 6 VAL VAL A . n C 3 7 ASP 7 7 7 ASP ASP A . n C 3 8 PHE 8 8 8 PHE PHE A . n C 3 9 ASP 9 9 9 ASP ASP A . n C 3 10 TYR 10 10 10 TYR TYR A . n C 3 11 PHE 11 11 11 PHE PHE A . n C 3 12 TYR 12 12 12 TYR TYR A . n C 3 13 ALA 13 13 13 ALA ALA A . n C 3 14 GLN 14 14 14 GLN GLN A . n C 3 15 VAL 15 15 15 VAL VAL A . n C 3 16 GLU 16 16 16 GLU GLU A . n C 3 17 GLU 17 17 17 GLU GLU A . n C 3 18 VAL 18 18 18 VAL VAL A . n C 3 19 LEU 19 19 19 LEU LEU A . n C 3 20 ASN 20 20 20 ASN ASN A . n C 3 21 PRO 21 21 21 PRO PRO A . n C 3 22 SER 22 22 22 SER SER A . n C 3 23 LEU 23 23 23 LEU LEU A . n C 3 24 LYS 24 24 24 LYS LYS A . n C 3 25 GLY 25 25 25 GLY GLY A . n C 3 26 LYS 26 26 26 LYS LYS A . n C 3 27 PRO 27 27 27 PRO PRO A . n C 3 28 VAL 28 28 28 VAL VAL A . n C 3 29 VAL 29 29 29 VAL VAL A . n C 3 30 VAL 30 30 30 VAL VAL A . n C 3 31 CYS 31 31 31 CYS CYS A . n C 3 32 VAL 32 32 32 VAL VAL A . n C 3 33 PHE 33 33 33 PHE PHE A . n C 3 34 SER 34 34 34 SER SER A . n C 3 35 GLY 35 35 35 GLY GLY A . n C 3 36 ARG 36 36 36 ARG ARG A . n C 3 37 PHE 37 37 37 PHE PHE A . n C 3 38 GLU 38 38 38 GLU GLU A . n C 3 39 ASP 39 39 39 ASP ASP A . n C 3 40 SER 40 40 40 SER SER A . n C 3 41 GLY 41 41 41 GLY GLY A . n C 3 42 ALA 42 42 42 ALA ALA A . n C 3 43 VAL 43 43 43 VAL VAL A . n C 3 44 ALA 44 44 44 ALA ALA A . n C 3 45 THR 45 45 45 THR THR A . n C 3 46 ALA 46 46 46 ALA ALA A . n C 3 47 ASN 47 47 47 ASN ASN A . n C 3 48 TYR 48 48 48 TYR TYR A . n C 3 49 GLU 49 49 49 GLU GLU A . n C 3 50 ALA 50 50 50 ALA ALA A . n C 3 51 ARG 51 51 51 ARG ARG A . n C 3 52 LYS 52 52 52 LYS LYS A . n C 3 53 PHE 53 53 53 PHE PHE A . n C 3 54 GLY 54 54 54 GLY GLY A . n C 3 55 VAL 55 55 55 VAL VAL A . n C 3 56 LYS 56 56 56 LYS LYS A . n C 3 57 ALA 57 57 57 ALA ALA A . n C 3 58 GLY 58 58 58 GLY GLY A . n C 3 59 ILE 59 59 59 ILE ILE A . n C 3 60 PRO 60 60 60 PRO PRO A . n C 3 61 ILE 61 61 61 ILE ILE A . n C 3 62 VAL 62 62 62 VAL VAL A . n C 3 63 GLU 63 63 63 GLU GLU A . n C 3 64 ALA 64 64 64 ALA ALA A . n C 3 65 LYS 65 65 65 LYS LYS A . n C 3 66 LYS 66 66 66 LYS LYS A . n C 3 67 ILE 67 67 67 ILE ILE A . n C 3 68 LEU 68 68 68 LEU LEU A . n C 3 69 PRO 69 69 69 PRO PRO A . n C 3 70 ASN 70 70 70 ASN ASN A . n C 3 71 ALA 71 71 71 ALA ALA A . n C 3 72 VAL 72 72 72 VAL VAL A . n C 3 73 TYR 73 73 73 TYR TYR A . n C 3 74 LEU 74 74 74 LEU LEU A . n C 3 75 PRO 75 75 75 PRO PRO A . n C 3 76 MET 76 76 76 MET MET A . n C 3 77 ARG 77 77 77 ARG ARG A . n C 3 78 LYS 78 78 78 LYS LYS A . n C 3 79 GLU 79 79 79 GLU GLU A . n C 3 80 VAL 80 80 80 VAL VAL A . n C 3 81 TYR 81 81 81 TYR TYR A . n C 3 82 GLN 82 82 82 GLN GLN A . n C 3 83 GLN 83 83 83 GLN GLN A . n C 3 84 VAL 84 84 84 VAL VAL A . n C 3 85 SER 85 85 85 SER SER A . n C 3 86 SER 86 86 86 SER SER A . n C 3 87 ARG 87 87 87 ARG ARG A . n C 3 88 ILE 88 88 88 ILE ILE A . n C 3 89 MET 89 89 89 MET MET A . n C 3 90 ASN 90 90 90 ASN ASN A . n C 3 91 LEU 91 91 91 LEU LEU A . n C 3 92 LEU 92 92 92 LEU LEU A . n C 3 93 ARG 93 93 93 ARG ARG A . n C 3 94 GLU 94 94 94 GLU GLU A . n C 3 95 TYR 95 95 95 TYR TYR A . n C 3 96 SER 96 96 96 SER SER A . n C 3 97 GLU 97 97 97 GLU GLU A . n C 3 98 LYS 98 98 98 LYS LYS A . n C 3 99 ILE 99 99 99 ILE ILE A . n C 3 100 GLU 100 100 100 GLU GLU A . n C 3 101 ILE 101 101 101 ILE ILE A . n C 3 102 ALA 102 102 102 ALA ALA A . n C 3 103 SER 103 103 103 SER SER A . n C 3 104 ILE 104 104 104 ILE ILE A . n C 3 105 ASP 105 105 105 ASP ASP A . n C 3 106 GLU 106 106 106 GLU GLU A . n C 3 107 ALA 107 107 107 ALA ALA A . n C 3 108 TYR 108 108 108 TYR TYR A . n C 3 109 LEU 109 109 109 LEU LEU A . n C 3 110 ASP 110 110 110 ASP ASP A . n C 3 111 ILE 111 111 111 ILE ILE A . n C 3 112 SER 112 112 112 SER SER A . n C 3 113 ASP 113 113 113 ASP ASP A . n C 3 114 LYS 114 114 114 LYS LYS A . n C 3 115 VAL 115 115 115 VAL VAL A . n C 3 116 ARG 116 116 116 ARG ARG A . n C 3 117 ASP 117 117 117 ASP ASP A . n C 3 118 TYR 118 118 118 TYR TYR A . n C 3 119 ARG 119 119 119 ARG ARG A . n C 3 120 GLU 120 120 120 GLU GLU A . n C 3 121 ALA 121 121 121 ALA ALA A . n C 3 122 TYR 122 122 122 TYR TYR A . n C 3 123 ASN 123 123 123 ASN ASN A . n C 3 124 LEU 124 124 124 LEU LEU A . n C 3 125 GLY 125 125 125 GLY GLY A . n C 3 126 LEU 126 126 126 LEU LEU A . n C 3 127 GLU 127 127 127 GLU GLU A . n C 3 128 ILE 128 128 128 ILE ILE A . n C 3 129 LYS 129 129 129 LYS LYS A . n C 3 130 ASN 130 130 130 ASN ASN A . n C 3 131 LYS 131 131 131 LYS LYS A . n C 3 132 ILE 132 132 132 ILE ILE A . n C 3 133 LEU 133 133 133 LEU LEU A . n C 3 134 GLU 134 134 134 GLU GLU A . n C 3 135 LYS 135 135 135 LYS LYS A . n C 3 136 GLU 136 136 136 GLU GLU A . n C 3 137 LYS 137 137 137 LYS LYS A . n C 3 138 ILE 138 138 138 ILE ILE A . n C 3 139 THR 139 139 139 THR THR A . n C 3 140 VAL 140 140 140 VAL VAL A . n C 3 141 THR 141 141 141 THR THR A . n C 3 142 VAL 142 142 142 VAL VAL A . n C 3 143 GLY 143 143 143 GLY GLY A . n C 3 144 ILE 144 144 144 ILE ILE A . n C 3 145 SER 145 145 145 SER SER A . n C 3 146 LYS 146 146 146 LYS LYS A . n C 3 147 ASN 147 147 147 ASN ASN A . n C 3 148 LYS 148 148 148 LYS LYS A . n C 3 149 VAL 149 149 149 VAL VAL A . n C 3 150 PHE 150 150 150 PHE PHE A . n C 3 151 ALA 151 151 151 ALA ALA A . n C 3 152 LYS 152 152 152 LYS LYS A . n C 3 153 ILE 153 153 153 ILE ILE A . n C 3 154 ALA 154 154 154 ALA ALA A . n C 3 155 ALA 155 155 155 ALA ALA A . n C 3 156 ASP 156 156 156 ASP ASP A . n C 3 157 MET 157 157 157 MET MET A . n C 3 158 ALA 158 158 158 ALA ALA A . n C 3 159 LYS 159 159 159 LYS LYS A . n C 3 160 PRO 160 160 160 PRO PRO A . n C 3 161 ASN 161 161 161 ASN ASN A . n C 3 162 GLY 162 162 162 GLY GLY A . n C 3 163 ILE 163 163 163 ILE ILE A . n C 3 164 LYS 164 164 164 LYS LYS A . n C 3 165 VAL 165 165 165 VAL VAL A . n C 3 166 ILE 166 166 166 ILE ILE A . n C 3 167 ASP 167 167 167 ASP ASP A . n C 3 168 ASP 168 168 168 ASP ASP A . n C 3 169 GLU 169 169 169 GLU GLU A . n C 3 170 GLU 170 170 170 GLU GLU A . n C 3 171 VAL 171 171 171 VAL VAL A . n C 3 172 LYS 172 172 172 LYS LYS A . n C 3 173 ARG 173 173 173 ARG ARG A . n C 3 174 LEU 174 174 174 LEU LEU A . n C 3 175 ILE 175 175 175 ILE ILE A . n C 3 176 ARG 176 176 176 ARG ARG A . n C 3 177 GLU 177 177 177 GLU GLU A . n C 3 178 LEU 178 178 178 LEU LEU A . n C 3 179 ASP 179 179 179 ASP ASP A . n C 3 180 ILE 180 180 180 ILE ILE A . n C 3 181 ALA 181 181 181 ALA ALA A . n C 3 182 ASP 182 182 182 ASP ASP A . n C 3 183 VAL 183 183 183 VAL VAL A . n C 3 184 PRO 184 184 184 PRO PRO A . n C 3 185 GLY 185 185 185 GLY GLY A . n C 3 186 ILE 186 186 186 ILE ILE A . n C 3 187 GLY 187 187 187 GLY GLY A . n C 3 188 ASN 188 188 188 ASN ASN A . n C 3 189 ILE 189 189 189 ILE ILE A . n C 3 190 THR 190 190 190 THR THR A . n C 3 191 ALA 191 191 191 ALA ALA A . n C 3 192 GLU 192 192 192 GLU GLU A . n C 3 193 LYS 193 193 193 LYS LYS A . n C 3 194 LEU 194 194 194 LEU LEU A . n C 3 195 LYS 195 195 195 LYS LYS A . n C 3 196 LYS 196 196 196 LYS LYS A . n C 3 197 LEU 197 197 197 LEU LEU A . n C 3 198 GLY 198 198 198 GLY GLY A . n C 3 199 ILE 199 199 199 ILE ILE A . n C 3 200 ASN 200 200 200 ASN ASN A . n C 3 201 LYS 201 201 201 LYS LYS A . n C 3 202 LEU 202 202 202 LEU LEU A . n C 3 203 VAL 203 203 203 VAL VAL A . n C 3 204 ASP 204 204 204 ASP ASP A . n C 3 205 THR 205 205 205 THR THR A . n C 3 206 LEU 206 206 206 LEU LEU A . n C 3 207 SER 207 207 207 SER SER A . n C 3 208 ILE 208 208 208 ILE ILE A . n C 3 209 GLU 209 209 209 GLU GLU A . n C 3 210 PHE 210 210 210 PHE PHE A . n C 3 211 ASP 211 211 211 ASP ASP A . n C 3 212 LYS 212 212 212 LYS LYS A . n C 3 213 LEU 213 213 213 LEU LEU A . n C 3 214 LYS 214 214 214 LYS LYS A . n C 3 215 GLY 215 215 215 GLY GLY A . n C 3 216 MET 216 216 216 MET MET A . n C 3 217 ILE 217 217 217 ILE ILE A . n C 3 218 GLY 218 218 218 GLY GLY A . n C 3 219 GLU 219 219 219 GLU GLU A . n C 3 220 ALA 220 220 220 ALA ALA A . n C 3 221 LYS 221 221 221 LYS LYS A . n C 3 222 ALA 222 222 222 ALA ALA A . n C 3 223 LYS 223 223 223 LYS LYS A . n C 3 224 TYR 224 224 224 TYR TYR A . n C 3 225 LEU 225 225 225 LEU LEU A . n C 3 226 ILE 226 226 226 ILE ILE A . n C 3 227 SER 227 227 227 SER SER A . n C 3 228 LEU 228 228 228 LEU LEU A . n C 3 229 ALA 229 229 229 ALA ALA A . n C 3 230 ARG 230 230 230 ARG ARG A . n C 3 231 ASP 231 231 231 ASP ASP A . n C 3 232 GLU 232 232 232 GLU GLU A . n C 3 233 TYR 233 233 233 TYR TYR A . n C 3 234 ASN 234 234 234 ASN ASN A . n C 3 235 GLU 235 235 235 GLU GLU A . n C 3 236 PRO 236 236 236 PRO PRO A . n C 3 237 ILE 237 237 237 ILE ILE A . n C 3 238 ARG 238 238 238 ARG ARG A . n C 3 239 THR 239 239 239 THR THR A . n C 3 240 ARG 240 240 240 ARG ARG A . n C 3 241 VAL 241 241 241 VAL VAL A . n C 3 242 ARG 242 242 242 ARG ARG A . n C 3 243 LYS 243 243 243 LYS LYS A . n C 3 244 SER 244 244 244 SER SER A . n C 3 245 ILE 245 245 245 ILE ILE A . n C 3 246 GLY 246 246 246 GLY GLY A . n C 3 247 ARG 247 247 247 ARG ARG A . n C 3 248 ILE 248 248 248 ILE ILE A . n C 3 249 VAL 249 249 249 VAL VAL A . n C 3 250 THR 250 250 250 THR THR A . n C 3 251 MET 251 251 251 MET MET A . n C 3 252 LYS 252 252 252 LYS LYS A . n C 3 253 ARG 253 253 253 ARG ARG A . n C 3 254 ASN 254 254 254 ASN ASN A . n C 3 255 SER 255 255 255 SER SER A . n C 3 256 ARG 256 256 256 ARG ARG A . n C 3 257 ASN 257 257 257 ASN ASN A . n C 3 258 LEU 258 258 258 LEU LEU A . n C 3 259 GLU 259 259 259 GLU GLU A . n C 3 260 GLU 260 260 260 GLU GLU A . n C 3 261 ILE 261 261 261 ILE ILE A . n C 3 262 LYS 262 262 262 LYS LYS A . n C 3 263 PRO 263 263 263 PRO PRO A . n C 3 264 TYR 264 264 264 TYR TYR A . n C 3 265 LEU 265 265 265 LEU LEU A . n C 3 266 PHE 266 266 266 PHE PHE A . n C 3 267 ARG 267 267 267 ARG ARG A . n C 3 268 ALA 268 268 268 ALA ALA A . n C 3 269 ILE 269 269 269 ILE ILE A . n C 3 270 GLU 270 270 270 GLU GLU A . n C 3 271 GLU 271 271 271 GLU GLU A . n C 3 272 SER 272 272 272 SER SER A . n C 3 273 TYR 273 273 273 TYR TYR A . n C 3 274 TYR 274 274 274 TYR TYR A . n C 3 275 LYS 275 275 275 LYS LYS A . n C 3 276 LEU 276 276 276 LEU LEU A . n C 3 277 ASP 277 277 277 ASP ASP A . n C 3 278 LYS 278 278 278 LYS LYS A . n C 3 279 ARG 279 279 279 ARG ARG A . n C 3 280 ILE 280 280 280 ILE ILE A . n C 3 281 PRO 281 281 281 PRO PRO A . n C 3 282 LYS 282 282 282 LYS LYS A . n C 3 283 ALA 283 283 283 ALA ALA A . n C 3 284 ILE 284 284 284 ILE ILE A . n C 3 285 HIS 285 285 285 HIS HIS A . n C 3 286 VAL 286 286 286 VAL VAL A . n C 3 287 VAL 287 287 287 VAL VAL A . n C 3 288 ALA 288 288 288 ALA ALA A . n C 3 289 VAL 289 289 289 VAL VAL A . n C 3 290 THR 290 290 290 THR THR A . n C 3 291 GLU 291 291 291 GLU GLU A . n C 3 292 ASP 292 292 292 ASP ASP A . n C 3 293 LEU 293 293 293 LEU LEU A . n C 3 294 ASP 294 294 294 ASP ASP A . n C 3 295 ILE 295 295 295 ILE ILE A . n C 3 296 VAL 296 296 296 VAL VAL A . n C 3 297 SER 297 297 297 SER SER A . n C 3 298 ARG 298 298 298 ARG ARG A . n C 3 299 GLY 299 299 299 GLY GLY A . n C 3 300 ARG 300 300 300 ARG ARG A . n C 3 301 THR 301 301 301 THR THR A . n C 3 302 PHE 302 302 302 PHE PHE A . n C 3 303 PRO 303 303 303 PRO PRO A . n C 3 304 HIS 304 304 304 HIS HIS A . n C 3 305 GLY 305 305 305 GLY GLY A . n C 3 306 ILE 306 306 306 ILE ILE A . n C 3 307 SER 307 307 307 SER SER A . n C 3 308 LYS 308 308 308 LYS LYS A . n C 3 309 GLU 309 309 309 GLU GLU A . n C 3 310 THR 310 310 310 THR THR A . n C 3 311 ALA 311 311 311 ALA ALA A . n C 3 312 TYR 312 312 312 TYR TYR A . n C 3 313 SER 313 313 313 SER SER A . n C 3 314 GLU 314 314 314 GLU GLU A . n C 3 315 SER 315 315 315 SER SER A . n C 3 316 VAL 316 316 316 VAL VAL A . n C 3 317 LYS 317 317 317 LYS LYS A . n C 3 318 LEU 318 318 318 LEU LEU A . n C 3 319 LEU 319 319 319 LEU LEU A . n C 3 320 GLN 320 320 320 GLN GLN A . n C 3 321 LYS 321 321 321 LYS LYS A . n C 3 322 ILE 322 322 322 ILE ILE A . n C 3 323 LEU 323 323 323 LEU LEU A . n C 3 324 GLU 324 324 324 GLU GLU A . n C 3 325 GLU 325 325 325 GLU GLU A . n C 3 326 ASP 326 326 326 ASP ASP A . n C 3 327 GLU 327 327 327 GLU GLU A . n C 3 328 ARG 328 328 328 ARG ARG A . n C 3 329 LYS 329 329 329 LYS LYS A . n C 3 330 ILE 330 330 330 ILE ILE A . n C 3 331 ARG 331 331 331 ARG ARG A . n C 3 332 ARG 332 332 332 ARG ARG A . n C 3 333 ILE 333 333 333 ILE ILE A . n C 3 334 GLY 334 334 334 GLY GLY A . n C 3 335 VAL 335 335 335 VAL VAL A . n C 3 336 ARG 336 336 336 ARG ARG A . n C 3 337 PHE 337 337 337 PHE PHE A . n C 3 338 SER 338 338 338 SER SER A . n C 3 339 LYS 339 339 339 LYS LYS A . n C 3 340 PHE 340 340 340 PHE PHE A . n C 3 341 ILE 341 341 341 ILE ILE A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CA 1 4001 4001 CA CA A . E 5 MG 1 4002 4002 MG MG A . F 4 CA 1 4003 4003 CA CA A . G 6 DTP 1 1814 1814 DTP DTP A . H 7 HOH 1 14 12 HOH TIP B . H 7 HOH 2 15 18 HOH TIP B . H 7 HOH 3 16 21 HOH TIP B . H 7 HOH 4 17 38 HOH TIP B . H 7 HOH 5 18 45 HOH TIP B . H 7 HOH 6 19 48 HOH TIP B . H 7 HOH 7 20 56 HOH TIP B . H 7 HOH 8 21 58 HOH TIP B . H 7 HOH 9 22 62 HOH TIP B . H 7 HOH 10 23 102 HOH TIP B . H 7 HOH 11 24 122 HOH TIP B . H 7 HOH 12 25 4016 HOH TIP B . H 7 HOH 13 26 4023 HOH TIP B . H 7 HOH 14 27 4028 HOH TIP B . H 7 HOH 15 28 4033 HOH TIP B . I 7 HOH 1 18 15 HOH TIP C . I 7 HOH 2 19 25 HOH TIP C . I 7 HOH 3 20 29 HOH TIP C . I 7 HOH 4 21 33 HOH TIP C . I 7 HOH 5 22 46 HOH TIP C . I 7 HOH 6 23 57 HOH TIP C . I 7 HOH 7 24 67 HOH TIP C . I 7 HOH 8 25 75 HOH TIP C . I 7 HOH 9 26 80 HOH TIP C . I 7 HOH 10 27 81 HOH TIP C . I 7 HOH 11 28 82 HOH TIP C . I 7 HOH 12 29 86 HOH TIP C . I 7 HOH 13 30 91 HOH TIP C . I 7 HOH 14 31 103 HOH TIP C . I 7 HOH 15 32 118 HOH TIP C . I 7 HOH 16 33 119 HOH TIP C . I 7 HOH 17 34 121 HOH TIP C . I 7 HOH 18 35 125 HOH TIP C . I 7 HOH 19 36 4008 HOH TIP C . I 7 HOH 20 37 4009 HOH TIP C . I 7 HOH 21 38 4014 HOH TIP C . I 7 HOH 22 39 4015 HOH TIP C . I 7 HOH 23 40 4019 HOH TIP C . I 7 HOH 24 41 4026 HOH TIP C . I 7 HOH 25 42 4032 HOH TIP C . I 7 HOH 26 43 4038 HOH TIP C . J 7 HOH 1 4004 2 HOH TIP A . J 7 HOH 2 4005 3 HOH TIP A . J 7 HOH 3 4006 4 HOH TIP A . J 7 HOH 4 4007 5 HOH TIP A . J 7 HOH 5 4008 6 HOH TIP A . J 7 HOH 6 4009 7 HOH TIP A . J 7 HOH 7 4010 8 HOH TIP A . J 7 HOH 8 4011 9 HOH TIP A . J 7 HOH 9 4012 10 HOH TIP A . J 7 HOH 10 4013 11 HOH TIP A . J 7 HOH 11 4014 13 HOH TIP A . J 7 HOH 12 4015 14 HOH TIP A . J 7 HOH 13 4016 16 HOH TIP A . J 7 HOH 14 4017 17 HOH TIP A . J 7 HOH 15 4018 19 HOH TIP A . J 7 HOH 16 4019 20 HOH TIP A . J 7 HOH 17 4020 22 HOH TIP A . J 7 HOH 18 4021 23 HOH TIP A . J 7 HOH 19 4022 24 HOH TIP A . J 7 HOH 20 4023 26 HOH TIP A . J 7 HOH 21 4024 27 HOH TIP A . J 7 HOH 22 4025 28 HOH TIP A . J 7 HOH 23 4026 30 HOH TIP A . J 7 HOH 24 4027 31 HOH TIP A . J 7 HOH 25 4028 32 HOH TIP A . J 7 HOH 26 4029 34 HOH TIP A . J 7 HOH 27 4030 35 HOH TIP A . J 7 HOH 28 4031 36 HOH TIP A . J 7 HOH 29 4032 37 HOH TIP A . J 7 HOH 30 4033 39 HOH TIP A . J 7 HOH 31 4034 40 HOH TIP A . J 7 HOH 32 4035 41 HOH TIP A . J 7 HOH 33 4036 42 HOH TIP A . J 7 HOH 34 4037 43 HOH TIP A . J 7 HOH 35 4038 47 HOH TIP A . J 7 HOH 36 4039 49 HOH TIP A . J 7 HOH 37 4040 50 HOH TIP A . J 7 HOH 38 4041 51 HOH TIP A . J 7 HOH 39 4042 52 HOH TIP A . J 7 HOH 40 4043 53 HOH TIP A . J 7 HOH 41 4044 54 HOH TIP A . J 7 HOH 42 4045 55 HOH TIP A . J 7 HOH 43 4046 59 HOH TIP A . J 7 HOH 44 4047 60 HOH TIP A . J 7 HOH 45 4048 61 HOH TIP A . J 7 HOH 46 4049 63 HOH TIP A . J 7 HOH 47 4050 64 HOH TIP A . J 7 HOH 48 4051 65 HOH TIP A . J 7 HOH 49 4052 66 HOH TIP A . J 7 HOH 50 4053 68 HOH TIP A . J 7 HOH 51 4054 69 HOH TIP A . J 7 HOH 52 4055 70 HOH TIP A . J 7 HOH 53 4056 71 HOH TIP A . J 7 HOH 54 4057 72 HOH TIP A . J 7 HOH 55 4058 73 HOH TIP A . J 7 HOH 56 4059 74 HOH TIP A . J 7 HOH 57 4060 76 HOH TIP A . J 7 HOH 58 4061 77 HOH TIP A . J 7 HOH 59 4062 78 HOH TIP A . J 7 HOH 60 4063 79 HOH TIP A . J 7 HOH 61 4064 83 HOH TIP A . J 7 HOH 62 4065 84 HOH TIP A . J 7 HOH 63 4066 85 HOH TIP A . J 7 HOH 64 4067 87 HOH TIP A . J 7 HOH 65 4068 88 HOH TIP A . J 7 HOH 66 4069 89 HOH TIP A . J 7 HOH 67 4070 90 HOH TIP A . J 7 HOH 68 4071 92 HOH TIP A . J 7 HOH 69 4072 93 HOH TIP A . J 7 HOH 70 4073 94 HOH TIP A . J 7 HOH 71 4074 95 HOH TIP A . J 7 HOH 72 4075 96 HOH TIP A . J 7 HOH 73 4076 97 HOH TIP A . J 7 HOH 74 4077 98 HOH TIP A . J 7 HOH 75 4078 99 HOH TIP A . J 7 HOH 76 4079 100 HOH TIP A . J 7 HOH 77 4080 104 HOH TIP A . J 7 HOH 78 4081 105 HOH TIP A . J 7 HOH 79 4082 106 HOH TIP A . J 7 HOH 80 4083 107 HOH TIP A . J 7 HOH 81 4084 108 HOH TIP A . J 7 HOH 82 4085 109 HOH TIP A . J 7 HOH 83 4086 110 HOH TIP A . J 7 HOH 84 4087 111 HOH TIP A . J 7 HOH 85 4088 113 HOH TIP A . J 7 HOH 86 4089 114 HOH TIP A . J 7 HOH 87 4090 115 HOH TIP A . J 7 HOH 88 4091 116 HOH TIP A . J 7 HOH 89 4092 117 HOH TIP A . J 7 HOH 90 4093 120 HOH TIP A . J 7 HOH 91 4094 123 HOH TIP A . J 7 HOH 92 4095 124 HOH TIP A . J 7 HOH 93 4096 126 HOH TIP A . J 7 HOH 94 4097 127 HOH TIP A . J 7 HOH 95 4098 128 HOH TIP A . J 7 HOH 96 4099 129 HOH TIP A . J 7 HOH 97 4100 4004 HOH TIP A . J 7 HOH 98 4101 4005 HOH TIP A . J 7 HOH 99 4102 4006 HOH TIP A . J 7 HOH 100 4103 4007 HOH TIP A . J 7 HOH 101 4104 4010 HOH TIP A . J 7 HOH 102 4105 4011 HOH TIP A . J 7 HOH 103 4106 4012 HOH TIP A . J 7 HOH 104 4107 4013 HOH TIP A . J 7 HOH 105 4108 4017 HOH TIP A . J 7 HOH 106 4109 4018 HOH TIP A . J 7 HOH 107 4110 4020 HOH TIP A . J 7 HOH 108 4111 4021 HOH TIP A . J 7 HOH 109 4112 4022 HOH TIP A . J 7 HOH 110 4113 4024 HOH TIP A . J 7 HOH 111 4114 4025 HOH TIP A . J 7 HOH 112 4115 4027 HOH TIP A . J 7 HOH 113 4116 4029 HOH TIP A . J 7 HOH 114 4117 4030 HOH TIP A . J 7 HOH 115 4118 4034 HOH TIP A . J 7 HOH 116 4119 4035 HOH TIP A . J 7 HOH 117 4120 4037 HOH TIP A . J 7 HOH 118 4121 4039 HOH TIP A . J 7 HOH 119 4122 4040 HOH TIP A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id DOC _pdbx_struct_mod_residue.label_seq_id 13 _pdbx_struct_mod_residue.auth_asym_id B _pdbx_struct_mod_residue.auth_comp_id DOC _pdbx_struct_mod_residue.auth_seq_id 13 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id DC _pdbx_struct_mod_residue.details "2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE" # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? A DOC 13 ? B DOC 13 ? 1_555 MG ? E MG . ? A MG 4002 ? 1_555 OD2 ? C ASP 7 ? A ASP 7 ? 1_555 152.8 ? 2 OP1 ? A DOC 13 ? B DOC 13 ? 1_555 MG ? E MG . ? A MG 4002 ? 1_555 OE2 ? C GLU 106 ? A GLU 106 ? 1_555 86.0 ? 3 OD2 ? C ASP 7 ? A ASP 7 ? 1_555 MG ? E MG . ? A MG 4002 ? 1_555 OE2 ? C GLU 106 ? A GLU 106 ? 1_555 100.0 ? 4 OP1 ? A DOC 13 ? B DOC 13 ? 1_555 MG ? E MG . ? A MG 4002 ? 1_555 O ? J HOH . ? A HOH 4004 ? 1_555 123.3 ? 5 OD2 ? C ASP 7 ? A ASP 7 ? 1_555 MG ? E MG . ? A MG 4002 ? 1_555 O ? J HOH . ? A HOH 4004 ? 1_555 83.1 ? 6 OE2 ? C GLU 106 ? A GLU 106 ? 1_555 MG ? E MG . ? A MG 4002 ? 1_555 O ? J HOH . ? A HOH 4004 ? 1_555 93.5 ? 7 OP1 ? A DOC 13 ? B DOC 13 ? 1_555 MG ? E MG . ? A MG 4002 ? 1_555 O ? J HOH . ? A HOH 4032 ? 1_555 74.4 ? 8 OD2 ? C ASP 7 ? A ASP 7 ? 1_555 MG ? E MG . ? A MG 4002 ? 1_555 O ? J HOH . ? A HOH 4032 ? 1_555 79.6 ? 9 OE2 ? C GLU 106 ? A GLU 106 ? 1_555 MG ? E MG . ? A MG 4002 ? 1_555 O ? J HOH . ? A HOH 4032 ? 1_555 85.4 ? 10 O ? J HOH . ? A HOH 4004 ? 1_555 MG ? E MG . ? A MG 4002 ? 1_555 O ? J HOH . ? A HOH 4032 ? 1_555 162.2 ? 11 OP1 ? A DOC 13 ? B DOC 13 ? 1_555 MG ? E MG . ? A MG 4002 ? 1_555 O ? J HOH . ? A HOH 4100 ? 1_555 86.8 ? 12 OD2 ? C ASP 7 ? A ASP 7 ? 1_555 MG ? E MG . ? A MG 4002 ? 1_555 O ? J HOH . ? A HOH 4100 ? 1_555 93.7 ? 13 OE2 ? C GLU 106 ? A GLU 106 ? 1_555 MG ? E MG . ? A MG 4002 ? 1_555 O ? J HOH . ? A HOH 4100 ? 1_555 162.4 ? 14 O ? J HOH . ? A HOH 4004 ? 1_555 MG ? E MG . ? A MG 4002 ? 1_555 O ? J HOH . ? A HOH 4100 ? 1_555 77.1 ? 15 O ? J HOH . ? A HOH 4032 ? 1_555 MG ? E MG . ? A MG 4002 ? 1_555 O ? J HOH . ? A HOH 4100 ? 1_555 108.1 ? 16 O ? H HOH . ? B HOH 28 ? 1_555 CA ? F CA . ? A CA 4003 ? 1_555 O ? C ALA 181 ? A ALA 181 ? 1_555 171.3 ? 17 O ? H HOH . ? B HOH 28 ? 1_555 CA ? F CA . ? A CA 4003 ? 1_555 O ? C ILE 186 ? A ILE 186 ? 1_555 79.0 ? 18 O ? C ALA 181 ? A ALA 181 ? 1_555 CA ? F CA . ? A CA 4003 ? 1_555 O ? C ILE 186 ? A ILE 186 ? 1_555 93.5 ? 19 OD1 ? C ASP 7 ? A ASP 7 ? 1_555 CA ? D CA . ? A CA 4001 ? 1_555 O ? C PHE 8 ? A PHE 8 ? 1_555 83.4 ? 20 OD1 ? C ASP 7 ? A ASP 7 ? 1_555 CA ? D CA . ? A CA 4001 ? 1_555 OD2 ? C ASP 105 ? A ASP 105 ? 1_555 86.3 ? 21 O ? C PHE 8 ? A PHE 8 ? 1_555 CA ? D CA . ? A CA 4001 ? 1_555 OD2 ? C ASP 105 ? A ASP 105 ? 1_555 89.4 ? 22 OD1 ? C ASP 7 ? A ASP 7 ? 1_555 CA ? D CA . ? A CA 4001 ? 1_555 O1G ? G DTP . ? A DTP 1814 ? 1_555 95.5 ? 23 O ? C PHE 8 ? A PHE 8 ? 1_555 CA ? D CA . ? A CA 4001 ? 1_555 O1G ? G DTP . ? A DTP 1814 ? 1_555 96.3 ? 24 OD2 ? C ASP 105 ? A ASP 105 ? 1_555 CA ? D CA . ? A CA 4001 ? 1_555 O1G ? G DTP . ? A DTP 1814 ? 1_555 174.2 ? 25 OD1 ? C ASP 7 ? A ASP 7 ? 1_555 CA ? D CA . ? A CA 4001 ? 1_555 O2B ? G DTP . ? A DTP 1814 ? 1_555 169.3 ? 26 O ? C PHE 8 ? A PHE 8 ? 1_555 CA ? D CA . ? A CA 4001 ? 1_555 O2B ? G DTP . ? A DTP 1814 ? 1_555 89.3 ? 27 OD2 ? C ASP 105 ? A ASP 105 ? 1_555 CA ? D CA . ? A CA 4001 ? 1_555 O2B ? G DTP . ? A DTP 1814 ? 1_555 85.9 ? 28 O1G ? G DTP . ? A DTP 1814 ? 1_555 CA ? D CA . ? A CA 4001 ? 1_555 O2B ? G DTP . ? A DTP 1814 ? 1_555 93.0 ? 29 OD1 ? C ASP 7 ? A ASP 7 ? 1_555 CA ? D CA . ? A CA 4001 ? 1_555 O3B ? G DTP . ? A DTP 1814 ? 1_555 140.3 ? 30 O ? C PHE 8 ? A PHE 8 ? 1_555 CA ? D CA . ? A CA 4001 ? 1_555 O3B ? G DTP . ? A DTP 1814 ? 1_555 104.4 ? 31 OD2 ? C ASP 105 ? A ASP 105 ? 1_555 CA ? D CA . ? A CA 4001 ? 1_555 O3B ? G DTP . ? A DTP 1814 ? 1_555 131.8 ? 32 O1G ? G DTP . ? A DTP 1814 ? 1_555 CA ? D CA . ? A CA 4001 ? 1_555 O3B ? G DTP . ? A DTP 1814 ? 1_555 45.4 ? 33 O2B ? G DTP . ? A DTP 1814 ? 1_555 CA ? D CA . ? A CA 4001 ? 1_555 O3B ? G DTP . ? A DTP 1814 ? 1_555 49.3 ? 34 OD1 ? C ASP 7 ? A ASP 7 ? 1_555 CA ? D CA . ? A CA 4001 ? 1_555 O1A ? G DTP . ? A DTP 1814 ? 1_555 110.1 ? 35 O ? C PHE 8 ? A PHE 8 ? 1_555 CA ? D CA . ? A CA 4001 ? 1_555 O1A ? G DTP . ? A DTP 1814 ? 1_555 166.3 ? 36 OD2 ? C ASP 105 ? A ASP 105 ? 1_555 CA ? D CA . ? A CA 4001 ? 1_555 O1A ? G DTP . ? A DTP 1814 ? 1_555 89.0 ? 37 O1G ? G DTP . ? A DTP 1814 ? 1_555 CA ? D CA . ? A CA 4001 ? 1_555 O1A ? G DTP . ? A DTP 1814 ? 1_555 85.2 ? 38 O2B ? G DTP . ? A DTP 1814 ? 1_555 CA ? D CA . ? A CA 4001 ? 1_555 O1A ? G DTP . ? A DTP 1814 ? 1_555 77.1 ? 39 O3B ? G DTP . ? A DTP 1814 ? 1_555 CA ? D CA . ? A CA 4001 ? 1_555 O1A ? G DTP . ? A DTP 1814 ? 1_555 67.1 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-09-06 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-11 5 'Structure model' 1 4 2023-08-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' 7 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' chem_comp_atom 3 5 'Structure model' chem_comp_bond 4 5 'Structure model' database_2 5 5 'Structure model' pdbx_initial_refinement_model 6 5 'Structure model' pdbx_struct_conn_angle 7 5 'Structure model' struct_conn 8 5 'Structure model' struct_conn_type 9 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id' 11 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 12 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 13 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id' 14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 15 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 16 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 17 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 18 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 19 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 20 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 21 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 22 5 'Structure model' '_pdbx_struct_conn_angle.value' 23 5 'Structure model' '_struct_conn.conn_type_id' 24 5 'Structure model' '_struct_conn.id' 25 5 'Structure model' '_struct_conn.pdbx_dist_value' 26 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 27 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 28 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 29 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 30 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 31 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 32 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 33 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 34 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 35 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 36 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 37 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 38 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 39 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 40 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 41 5 'Structure model' '_struct_conn_type.id' 42 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 43 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 44 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 CNS 1.1 ? package 'Axel T. Brunger' axel.brunger@yale.edu refinement http://cns.csb.yale.edu/v1.1/ Fortran_77 ? 3 PDB_EXTRACT 1.700 'May. 30, 2005' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 4 CNS . ? ? ? ? phasing ? ? ? 5 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 "O4'" _pdbx_validate_close_contact.auth_asym_id_1 B _pdbx_validate_close_contact.auth_comp_id_1 DA _pdbx_validate_close_contact.auth_seq_id_1 5 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 19 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.19 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR A 10 ? ? 21.30 53.58 2 1 SER A 96 ? ? -179.53 139.92 3 1 SER A 103 ? ? -171.20 -169.87 4 1 ARG A 256 ? ? -146.24 30.74 5 1 ASP A 277 ? ? 31.78 82.77 6 1 LYS A 278 ? ? 84.14 -23.36 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CA CA CA N N 74 CYS N N N N 75 CYS CA C N R 76 CYS C C N N 77 CYS O O N N 78 CYS CB C N N 79 CYS SG S N N 80 CYS OXT O N N 81 CYS H H N N 82 CYS H2 H N N 83 CYS HA H N N 84 CYS HB2 H N N 85 CYS HB3 H N N 86 CYS HG H N N 87 CYS HXT H N N 88 DA OP3 O N N 89 DA P P N N 90 DA OP1 O N N 91 DA OP2 O N N 92 DA "O5'" O N N 93 DA "C5'" C N N 94 DA "C4'" C N R 95 DA "O4'" O N N 96 DA "C3'" C N S 97 DA "O3'" O N N 98 DA "C2'" C N N 99 DA "C1'" C N R 100 DA N9 N Y N 101 DA C8 C Y N 102 DA N7 N Y N 103 DA C5 C Y N 104 DA C6 C Y N 105 DA N6 N N N 106 DA N1 N Y N 107 DA C2 C Y N 108 DA N3 N Y N 109 DA C4 C Y N 110 DA HOP3 H N N 111 DA HOP2 H N N 112 DA "H5'" H N N 113 DA "H5''" H N N 114 DA "H4'" H N N 115 DA "H3'" H N N 116 DA "HO3'" H N N 117 DA "H2'" H N N 118 DA "H2''" H N N 119 DA "H1'" H N N 120 DA H8 H N N 121 DA H61 H N N 122 DA H62 H N N 123 DA H2 H N N 124 DC OP3 O N N 125 DC P P N N 126 DC OP1 O N N 127 DC OP2 O N N 128 DC "O5'" O N N 129 DC "C5'" C N N 130 DC "C4'" C N R 131 DC "O4'" O N N 132 DC "C3'" C N S 133 DC "O3'" O N N 134 DC "C2'" C N N 135 DC "C1'" C N R 136 DC N1 N N N 137 DC C2 C N N 138 DC O2 O N N 139 DC N3 N N N 140 DC C4 C N N 141 DC N4 N N N 142 DC C5 C N N 143 DC C6 C N N 144 DC HOP3 H N N 145 DC HOP2 H N N 146 DC "H5'" H N N 147 DC "H5''" H N N 148 DC "H4'" H N N 149 DC "H3'" H N N 150 DC "HO3'" H N N 151 DC "H2'" H N N 152 DC "H2''" H N N 153 DC "H1'" H N N 154 DC H41 H N N 155 DC H42 H N N 156 DC H5 H N N 157 DC H6 H N N 158 DG OP3 O N N 159 DG P P N N 160 DG OP1 O N N 161 DG OP2 O N N 162 DG "O5'" O N N 163 DG "C5'" C N N 164 DG "C4'" C N R 165 DG "O4'" O N N 166 DG "C3'" C N S 167 DG "O3'" O N N 168 DG "C2'" C N N 169 DG "C1'" C N R 170 DG N9 N Y N 171 DG C8 C Y N 172 DG N7 N Y N 173 DG C5 C Y N 174 DG C6 C N N 175 DG O6 O N N 176 DG N1 N N N 177 DG C2 C N N 178 DG N2 N N N 179 DG N3 N N N 180 DG C4 C Y N 181 DG HOP3 H N N 182 DG HOP2 H N N 183 DG "H5'" H N N 184 DG "H5''" H N N 185 DG "H4'" H N N 186 DG "H3'" H N N 187 DG "HO3'" H N N 188 DG "H2'" H N N 189 DG "H2''" H N N 190 DG "H1'" H N N 191 DG H8 H N N 192 DG H1 H N N 193 DG H21 H N N 194 DG H22 H N N 195 DOC N1 N N N 196 DOC C2 C N N 197 DOC N3 N N N 198 DOC C4 C N N 199 DOC C5 C N N 200 DOC C6 C N N 201 DOC O2 O N N 202 DOC N4 N N N 203 DOC "C1'" C N R 204 DOC "C2'" C N N 205 DOC "C3'" C N N 206 DOC "C4'" C N S 207 DOC "O4'" O N N 208 DOC "C5'" C N N 209 DOC "O5'" O N N 210 DOC P P N N 211 DOC OP1 O N N 212 DOC OP2 O N N 213 DOC OP3 O N N 214 DOC H5 H N N 215 DOC H6 H N N 216 DOC HN41 H N N 217 DOC HN42 H N N 218 DOC "H1'" H N N 219 DOC "H2'" H N N 220 DOC "H2''" H N N 221 DOC "H3'1" H N N 222 DOC "H3'2" H N N 223 DOC "H4'" H N N 224 DOC "H5'" H N N 225 DOC "H5''" H N N 226 DOC HOP2 H N N 227 DOC HOP3 H N N 228 DT OP3 O N N 229 DT P P N N 230 DT OP1 O N N 231 DT OP2 O N N 232 DT "O5'" O N N 233 DT "C5'" C N N 234 DT "C4'" C N R 235 DT "O4'" O N N 236 DT "C3'" C N S 237 DT "O3'" O N N 238 DT "C2'" C N N 239 DT "C1'" C N R 240 DT N1 N N N 241 DT C2 C N N 242 DT O2 O N N 243 DT N3 N N N 244 DT C4 C N N 245 DT O4 O N N 246 DT C5 C N N 247 DT C7 C N N 248 DT C6 C N N 249 DT HOP3 H N N 250 DT HOP2 H N N 251 DT "H5'" H N N 252 DT "H5''" H N N 253 DT "H4'" H N N 254 DT "H3'" H N N 255 DT "HO3'" H N N 256 DT "H2'" H N N 257 DT "H2''" H N N 258 DT "H1'" H N N 259 DT H3 H N N 260 DT H71 H N N 261 DT H72 H N N 262 DT H73 H N N 263 DT H6 H N N 264 DTP PG P N N 265 DTP O1G O N N 266 DTP O2G O N N 267 DTP O3G O N N 268 DTP PB P N S 269 DTP O1B O N N 270 DTP O2B O N N 271 DTP O3B O N N 272 DTP PA P N S 273 DTP O1A O N N 274 DTP O2A O N N 275 DTP O3A O N N 276 DTP "O5'" O N N 277 DTP "C5'" C N N 278 DTP "C4'" C N R 279 DTP "O4'" O N N 280 DTP "C3'" C N S 281 DTP "O3'" O N N 282 DTP "C2'" C N N 283 DTP "C1'" C N R 284 DTP N9 N Y N 285 DTP C8 C Y N 286 DTP N7 N Y N 287 DTP C5 C Y N 288 DTP C6 C Y N 289 DTP N6 N N N 290 DTP N1 N Y N 291 DTP C2 C Y N 292 DTP N3 N Y N 293 DTP C4 C Y N 294 DTP HOG2 H N N 295 DTP HOG3 H N N 296 DTP HOB2 H N N 297 DTP HOA2 H N N 298 DTP "H5'1" H N N 299 DTP "H5'2" H N N 300 DTP "H4'" H N N 301 DTP "H3'" H N N 302 DTP "HO3'" H N N 303 DTP "H2'1" H N N 304 DTP "H2'2" H N N 305 DTP "H1'" H N N 306 DTP H8 H N N 307 DTP HN61 H N N 308 DTP HN62 H N N 309 DTP H2 H N N 310 GLN N N N N 311 GLN CA C N S 312 GLN C C N N 313 GLN O O N N 314 GLN CB C N N 315 GLN CG C N N 316 GLN CD C N N 317 GLN OE1 O N N 318 GLN NE2 N N N 319 GLN OXT O N N 320 GLN H H N N 321 GLN H2 H N N 322 GLN HA H N N 323 GLN HB2 H N N 324 GLN HB3 H N N 325 GLN HG2 H N N 326 GLN HG3 H N N 327 GLN HE21 H N N 328 GLN HE22 H N N 329 GLN HXT H N N 330 GLU N N N N 331 GLU CA C N S 332 GLU C C N N 333 GLU O O N N 334 GLU CB C N N 335 GLU CG C N N 336 GLU CD C N N 337 GLU OE1 O N N 338 GLU OE2 O N N 339 GLU OXT O N N 340 GLU H H N N 341 GLU H2 H N N 342 GLU HA H N N 343 GLU HB2 H N N 344 GLU HB3 H N N 345 GLU HG2 H N N 346 GLU HG3 H N N 347 GLU HE2 H N N 348 GLU HXT H N N 349 GLY N N N N 350 GLY CA C N N 351 GLY C C N N 352 GLY O O N N 353 GLY OXT O N N 354 GLY H H N N 355 GLY H2 H N N 356 GLY HA2 H N N 357 GLY HA3 H N N 358 GLY HXT H N N 359 HIS N N N N 360 HIS CA C N S 361 HIS C C N N 362 HIS O O N N 363 HIS CB C N N 364 HIS CG C Y N 365 HIS ND1 N Y N 366 HIS CD2 C Y N 367 HIS CE1 C Y N 368 HIS NE2 N Y N 369 HIS OXT O N N 370 HIS H H N N 371 HIS H2 H N N 372 HIS HA H N N 373 HIS HB2 H N N 374 HIS HB3 H N N 375 HIS HD1 H N N 376 HIS HD2 H N N 377 HIS HE1 H N N 378 HIS HE2 H N N 379 HIS HXT H N N 380 HOH O O N N 381 HOH H1 H N N 382 HOH H2 H N N 383 ILE N N N N 384 ILE CA C N S 385 ILE C C N N 386 ILE O O N N 387 ILE CB C N S 388 ILE CG1 C N N 389 ILE CG2 C N N 390 ILE CD1 C N N 391 ILE OXT O N N 392 ILE H H N N 393 ILE H2 H N N 394 ILE HA H N N 395 ILE HB H N N 396 ILE HG12 H N N 397 ILE HG13 H N N 398 ILE HG21 H N N 399 ILE HG22 H N N 400 ILE HG23 H N N 401 ILE HD11 H N N 402 ILE HD12 H N N 403 ILE HD13 H N N 404 ILE HXT H N N 405 LEU N N N N 406 LEU CA C N S 407 LEU C C N N 408 LEU O O N N 409 LEU CB C N N 410 LEU CG C N N 411 LEU CD1 C N N 412 LEU CD2 C N N 413 LEU OXT O N N 414 LEU H H N N 415 LEU H2 H N N 416 LEU HA H N N 417 LEU HB2 H N N 418 LEU HB3 H N N 419 LEU HG H N N 420 LEU HD11 H N N 421 LEU HD12 H N N 422 LEU HD13 H N N 423 LEU HD21 H N N 424 LEU HD22 H N N 425 LEU HD23 H N N 426 LEU HXT H N N 427 LYS N N N N 428 LYS CA C N S 429 LYS C C N N 430 LYS O O N N 431 LYS CB C N N 432 LYS CG C N N 433 LYS CD C N N 434 LYS CE C N N 435 LYS NZ N N N 436 LYS OXT O N N 437 LYS H H N N 438 LYS H2 H N N 439 LYS HA H N N 440 LYS HB2 H N N 441 LYS HB3 H N N 442 LYS HG2 H N N 443 LYS HG3 H N N 444 LYS HD2 H N N 445 LYS HD3 H N N 446 LYS HE2 H N N 447 LYS HE3 H N N 448 LYS HZ1 H N N 449 LYS HZ2 H N N 450 LYS HZ3 H N N 451 LYS HXT H N N 452 MET N N N N 453 MET CA C N S 454 MET C C N N 455 MET O O N N 456 MET CB C N N 457 MET CG C N N 458 MET SD S N N 459 MET CE C N N 460 MET OXT O N N 461 MET H H N N 462 MET H2 H N N 463 MET HA H N N 464 MET HB2 H N N 465 MET HB3 H N N 466 MET HG2 H N N 467 MET HG3 H N N 468 MET HE1 H N N 469 MET HE2 H N N 470 MET HE3 H N N 471 MET HXT H N N 472 MG MG MG N N 473 PHE N N N N 474 PHE CA C N S 475 PHE C C N N 476 PHE O O N N 477 PHE CB C N N 478 PHE CG C Y N 479 PHE CD1 C Y N 480 PHE CD2 C Y N 481 PHE CE1 C Y N 482 PHE CE2 C Y N 483 PHE CZ C Y N 484 PHE OXT O N N 485 PHE H H N N 486 PHE H2 H N N 487 PHE HA H N N 488 PHE HB2 H N N 489 PHE HB3 H N N 490 PHE HD1 H N N 491 PHE HD2 H N N 492 PHE HE1 H N N 493 PHE HE2 H N N 494 PHE HZ H N N 495 PHE HXT H N N 496 PRO N N N N 497 PRO CA C N S 498 PRO C C N N 499 PRO O O N N 500 PRO CB C N N 501 PRO CG C N N 502 PRO CD C N N 503 PRO OXT O N N 504 PRO H H N N 505 PRO HA H N N 506 PRO HB2 H N N 507 PRO HB3 H N N 508 PRO HG2 H N N 509 PRO HG3 H N N 510 PRO HD2 H N N 511 PRO HD3 H N N 512 PRO HXT H N N 513 SER N N N N 514 SER CA C N S 515 SER C C N N 516 SER O O N N 517 SER CB C N N 518 SER OG O N N 519 SER OXT O N N 520 SER H H N N 521 SER H2 H N N 522 SER HA H N N 523 SER HB2 H N N 524 SER HB3 H N N 525 SER HG H N N 526 SER HXT H N N 527 THR N N N N 528 THR CA C N S 529 THR C C N N 530 THR O O N N 531 THR CB C N R 532 THR OG1 O N N 533 THR CG2 C N N 534 THR OXT O N N 535 THR H H N N 536 THR H2 H N N 537 THR HA H N N 538 THR HB H N N 539 THR HG1 H N N 540 THR HG21 H N N 541 THR HG22 H N N 542 THR HG23 H N N 543 THR HXT H N N 544 TYR N N N N 545 TYR CA C N S 546 TYR C C N N 547 TYR O O N N 548 TYR CB C N N 549 TYR CG C Y N 550 TYR CD1 C Y N 551 TYR CD2 C Y N 552 TYR CE1 C Y N 553 TYR CE2 C Y N 554 TYR CZ C Y N 555 TYR OH O N N 556 TYR OXT O N N 557 TYR H H N N 558 TYR H2 H N N 559 TYR HA H N N 560 TYR HB2 H N N 561 TYR HB3 H N N 562 TYR HD1 H N N 563 TYR HD2 H N N 564 TYR HE1 H N N 565 TYR HE2 H N N 566 TYR HH H N N 567 TYR HXT H N N 568 VAL N N N N 569 VAL CA C N S 570 VAL C C N N 571 VAL O O N N 572 VAL CB C N N 573 VAL CG1 C N N 574 VAL CG2 C N N 575 VAL OXT O N N 576 VAL H H N N 577 VAL H2 H N N 578 VAL HA H N N 579 VAL HB H N N 580 VAL HG11 H N N 581 VAL HG12 H N N 582 VAL HG13 H N N 583 VAL HG21 H N N 584 VAL HG22 H N N 585 VAL HG23 H N N 586 VAL HXT H N N 587 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DG OP3 P sing N N 156 DG OP3 HOP3 sing N N 157 DG P OP1 doub N N 158 DG P OP2 sing N N 159 DG P "O5'" sing N N 160 DG OP2 HOP2 sing N N 161 DG "O5'" "C5'" sing N N 162 DG "C5'" "C4'" sing N N 163 DG "C5'" "H5'" sing N N 164 DG "C5'" "H5''" sing N N 165 DG "C4'" "O4'" sing N N 166 DG "C4'" "C3'" sing N N 167 DG "C4'" "H4'" sing N N 168 DG "O4'" "C1'" sing N N 169 DG "C3'" "O3'" sing N N 170 DG "C3'" "C2'" sing N N 171 DG "C3'" "H3'" sing N N 172 DG "O3'" "HO3'" sing N N 173 DG "C2'" "C1'" sing N N 174 DG "C2'" "H2'" sing N N 175 DG "C2'" "H2''" sing N N 176 DG "C1'" N9 sing N N 177 DG "C1'" "H1'" sing N N 178 DG N9 C8 sing Y N 179 DG N9 C4 sing Y N 180 DG C8 N7 doub Y N 181 DG C8 H8 sing N N 182 DG N7 C5 sing Y N 183 DG C5 C6 sing N N 184 DG C5 C4 doub Y N 185 DG C6 O6 doub N N 186 DG C6 N1 sing N N 187 DG N1 C2 sing N N 188 DG N1 H1 sing N N 189 DG C2 N2 sing N N 190 DG C2 N3 doub N N 191 DG N2 H21 sing N N 192 DG N2 H22 sing N N 193 DG N3 C4 sing N N 194 DOC N1 C2 sing N N 195 DOC N1 C6 sing N N 196 DOC N1 "C1'" sing N N 197 DOC C2 N3 sing N N 198 DOC C2 O2 doub N N 199 DOC N3 C4 doub N N 200 DOC C4 C5 sing N N 201 DOC C4 N4 sing N N 202 DOC C5 C6 doub N N 203 DOC C5 H5 sing N N 204 DOC C6 H6 sing N N 205 DOC N4 HN41 sing N N 206 DOC N4 HN42 sing N N 207 DOC "C1'" "C2'" sing N N 208 DOC "C1'" "O4'" sing N N 209 DOC "C1'" "H1'" sing N N 210 DOC "C2'" "C3'" sing N N 211 DOC "C2'" "H2'" sing N N 212 DOC "C2'" "H2''" sing N N 213 DOC "C3'" "C4'" sing N N 214 DOC "C3'" "H3'1" sing N N 215 DOC "C3'" "H3'2" sing N N 216 DOC "C4'" "O4'" sing N N 217 DOC "C4'" "C5'" sing N N 218 DOC "C4'" "H4'" sing N N 219 DOC "C5'" "O5'" sing N N 220 DOC "C5'" "H5'" sing N N 221 DOC "C5'" "H5''" sing N N 222 DOC "O5'" P sing N N 223 DOC P OP1 doub N N 224 DOC P OP2 sing N N 225 DOC P OP3 sing N N 226 DOC OP2 HOP2 sing N N 227 DOC OP3 HOP3 sing N N 228 DT OP3 P sing N N 229 DT OP3 HOP3 sing N N 230 DT P OP1 doub N N 231 DT P OP2 sing N N 232 DT P "O5'" sing N N 233 DT OP2 HOP2 sing N N 234 DT "O5'" "C5'" sing N N 235 DT "C5'" "C4'" sing N N 236 DT "C5'" "H5'" sing N N 237 DT "C5'" "H5''" sing N N 238 DT "C4'" "O4'" sing N N 239 DT "C4'" "C3'" sing N N 240 DT "C4'" "H4'" sing N N 241 DT "O4'" "C1'" sing N N 242 DT "C3'" "O3'" sing N N 243 DT "C3'" "C2'" sing N N 244 DT "C3'" "H3'" sing N N 245 DT "O3'" "HO3'" sing N N 246 DT "C2'" "C1'" sing N N 247 DT "C2'" "H2'" sing N N 248 DT "C2'" "H2''" sing N N 249 DT "C1'" N1 sing N N 250 DT "C1'" "H1'" sing N N 251 DT N1 C2 sing N N 252 DT N1 C6 sing N N 253 DT C2 O2 doub N N 254 DT C2 N3 sing N N 255 DT N3 C4 sing N N 256 DT N3 H3 sing N N 257 DT C4 O4 doub N N 258 DT C4 C5 sing N N 259 DT C5 C7 sing N N 260 DT C5 C6 doub N N 261 DT C7 H71 sing N N 262 DT C7 H72 sing N N 263 DT C7 H73 sing N N 264 DT C6 H6 sing N N 265 DTP PG O1G doub N N 266 DTP PG O2G sing N N 267 DTP PG O3G sing N N 268 DTP PG O3B sing N N 269 DTP O2G HOG2 sing N N 270 DTP O3G HOG3 sing N N 271 DTP PB O1B doub N N 272 DTP PB O2B sing N N 273 DTP PB O3B sing N N 274 DTP PB O3A sing N N 275 DTP O2B HOB2 sing N N 276 DTP PA O1A doub N N 277 DTP PA O2A sing N N 278 DTP PA O3A sing N N 279 DTP PA "O5'" sing N N 280 DTP O2A HOA2 sing N N 281 DTP "O5'" "C5'" sing N N 282 DTP "C5'" "C4'" sing N N 283 DTP "C5'" "H5'1" sing N N 284 DTP "C5'" "H5'2" sing N N 285 DTP "C4'" "O4'" sing N N 286 DTP "C4'" "C3'" sing N N 287 DTP "C4'" "H4'" sing N N 288 DTP "O4'" "C1'" sing N N 289 DTP "C3'" "O3'" sing N N 290 DTP "C3'" "C2'" sing N N 291 DTP "C3'" "H3'" sing N N 292 DTP "O3'" "HO3'" sing N N 293 DTP "C2'" "C1'" sing N N 294 DTP "C2'" "H2'1" sing N N 295 DTP "C2'" "H2'2" sing N N 296 DTP "C1'" N9 sing N N 297 DTP "C1'" "H1'" sing N N 298 DTP N9 C8 sing Y N 299 DTP N9 C4 sing Y N 300 DTP C8 N7 doub Y N 301 DTP C8 H8 sing N N 302 DTP N7 C5 sing Y N 303 DTP C5 C6 sing Y N 304 DTP C5 C4 doub Y N 305 DTP C6 N6 sing N N 306 DTP C6 N1 doub Y N 307 DTP N6 HN61 sing N N 308 DTP N6 HN62 sing N N 309 DTP N1 C2 sing Y N 310 DTP C2 N3 doub Y N 311 DTP C2 H2 sing N N 312 DTP N3 C4 sing Y N 313 GLN N CA sing N N 314 GLN N H sing N N 315 GLN N H2 sing N N 316 GLN CA C sing N N 317 GLN CA CB sing N N 318 GLN CA HA sing N N 319 GLN C O doub N N 320 GLN C OXT sing N N 321 GLN CB CG sing N N 322 GLN CB HB2 sing N N 323 GLN CB HB3 sing N N 324 GLN CG CD sing N N 325 GLN CG HG2 sing N N 326 GLN CG HG3 sing N N 327 GLN CD OE1 doub N N 328 GLN CD NE2 sing N N 329 GLN NE2 HE21 sing N N 330 GLN NE2 HE22 sing N N 331 GLN OXT HXT sing N N 332 GLU N CA sing N N 333 GLU N H sing N N 334 GLU N H2 sing N N 335 GLU CA C sing N N 336 GLU CA CB sing N N 337 GLU CA HA sing N N 338 GLU C O doub N N 339 GLU C OXT sing N N 340 GLU CB CG sing N N 341 GLU CB HB2 sing N N 342 GLU CB HB3 sing N N 343 GLU CG CD sing N N 344 GLU CG HG2 sing N N 345 GLU CG HG3 sing N N 346 GLU CD OE1 doub N N 347 GLU CD OE2 sing N N 348 GLU OE2 HE2 sing N N 349 GLU OXT HXT sing N N 350 GLY N CA sing N N 351 GLY N H sing N N 352 GLY N H2 sing N N 353 GLY CA C sing N N 354 GLY CA HA2 sing N N 355 GLY CA HA3 sing N N 356 GLY C O doub N N 357 GLY C OXT sing N N 358 GLY OXT HXT sing N N 359 HIS N CA sing N N 360 HIS N H sing N N 361 HIS N H2 sing N N 362 HIS CA C sing N N 363 HIS CA CB sing N N 364 HIS CA HA sing N N 365 HIS C O doub N N 366 HIS C OXT sing N N 367 HIS CB CG sing N N 368 HIS CB HB2 sing N N 369 HIS CB HB3 sing N N 370 HIS CG ND1 sing Y N 371 HIS CG CD2 doub Y N 372 HIS ND1 CE1 doub Y N 373 HIS ND1 HD1 sing N N 374 HIS CD2 NE2 sing Y N 375 HIS CD2 HD2 sing N N 376 HIS CE1 NE2 sing Y N 377 HIS CE1 HE1 sing N N 378 HIS NE2 HE2 sing N N 379 HIS OXT HXT sing N N 380 HOH O H1 sing N N 381 HOH O H2 sing N N 382 ILE N CA sing N N 383 ILE N H sing N N 384 ILE N H2 sing N N 385 ILE CA C sing N N 386 ILE CA CB sing N N 387 ILE CA HA sing N N 388 ILE C O doub N N 389 ILE C OXT sing N N 390 ILE CB CG1 sing N N 391 ILE CB CG2 sing N N 392 ILE CB HB sing N N 393 ILE CG1 CD1 sing N N 394 ILE CG1 HG12 sing N N 395 ILE CG1 HG13 sing N N 396 ILE CG2 HG21 sing N N 397 ILE CG2 HG22 sing N N 398 ILE CG2 HG23 sing N N 399 ILE CD1 HD11 sing N N 400 ILE CD1 HD12 sing N N 401 ILE CD1 HD13 sing N N 402 ILE OXT HXT sing N N 403 LEU N CA sing N N 404 LEU N H sing N N 405 LEU N H2 sing N N 406 LEU CA C sing N N 407 LEU CA CB sing N N 408 LEU CA HA sing N N 409 LEU C O doub N N 410 LEU C OXT sing N N 411 LEU CB CG sing N N 412 LEU CB HB2 sing N N 413 LEU CB HB3 sing N N 414 LEU CG CD1 sing N N 415 LEU CG CD2 sing N N 416 LEU CG HG sing N N 417 LEU CD1 HD11 sing N N 418 LEU CD1 HD12 sing N N 419 LEU CD1 HD13 sing N N 420 LEU CD2 HD21 sing N N 421 LEU CD2 HD22 sing N N 422 LEU CD2 HD23 sing N N 423 LEU OXT HXT sing N N 424 LYS N CA sing N N 425 LYS N H sing N N 426 LYS N H2 sing N N 427 LYS CA C sing N N 428 LYS CA CB sing N N 429 LYS CA HA sing N N 430 LYS C O doub N N 431 LYS C OXT sing N N 432 LYS CB CG sing N N 433 LYS CB HB2 sing N N 434 LYS CB HB3 sing N N 435 LYS CG CD sing N N 436 LYS CG HG2 sing N N 437 LYS CG HG3 sing N N 438 LYS CD CE sing N N 439 LYS CD HD2 sing N N 440 LYS CD HD3 sing N N 441 LYS CE NZ sing N N 442 LYS CE HE2 sing N N 443 LYS CE HE3 sing N N 444 LYS NZ HZ1 sing N N 445 LYS NZ HZ2 sing N N 446 LYS NZ HZ3 sing N N 447 LYS OXT HXT sing N N 448 MET N CA sing N N 449 MET N H sing N N 450 MET N H2 sing N N 451 MET CA C sing N N 452 MET CA CB sing N N 453 MET CA HA sing N N 454 MET C O doub N N 455 MET C OXT sing N N 456 MET CB CG sing N N 457 MET CB HB2 sing N N 458 MET CB HB3 sing N N 459 MET CG SD sing N N 460 MET CG HG2 sing N N 461 MET CG HG3 sing N N 462 MET SD CE sing N N 463 MET CE HE1 sing N N 464 MET CE HE2 sing N N 465 MET CE HE3 sing N N 466 MET OXT HXT sing N N 467 PHE N CA sing N N 468 PHE N H sing N N 469 PHE N H2 sing N N 470 PHE CA C sing N N 471 PHE CA CB sing N N 472 PHE CA HA sing N N 473 PHE C O doub N N 474 PHE C OXT sing N N 475 PHE CB CG sing N N 476 PHE CB HB2 sing N N 477 PHE CB HB3 sing N N 478 PHE CG CD1 doub Y N 479 PHE CG CD2 sing Y N 480 PHE CD1 CE1 sing Y N 481 PHE CD1 HD1 sing N N 482 PHE CD2 CE2 doub Y N 483 PHE CD2 HD2 sing N N 484 PHE CE1 CZ doub Y N 485 PHE CE1 HE1 sing N N 486 PHE CE2 CZ sing Y N 487 PHE CE2 HE2 sing N N 488 PHE CZ HZ sing N N 489 PHE OXT HXT sing N N 490 PRO N CA sing N N 491 PRO N CD sing N N 492 PRO N H sing N N 493 PRO CA C sing N N 494 PRO CA CB sing N N 495 PRO CA HA sing N N 496 PRO C O doub N N 497 PRO C OXT sing N N 498 PRO CB CG sing N N 499 PRO CB HB2 sing N N 500 PRO CB HB3 sing N N 501 PRO CG CD sing N N 502 PRO CG HG2 sing N N 503 PRO CG HG3 sing N N 504 PRO CD HD2 sing N N 505 PRO CD HD3 sing N N 506 PRO OXT HXT sing N N 507 SER N CA sing N N 508 SER N H sing N N 509 SER N H2 sing N N 510 SER CA C sing N N 511 SER CA CB sing N N 512 SER CA HA sing N N 513 SER C O doub N N 514 SER C OXT sing N N 515 SER CB OG sing N N 516 SER CB HB2 sing N N 517 SER CB HB3 sing N N 518 SER OG HG sing N N 519 SER OXT HXT sing N N 520 THR N CA sing N N 521 THR N H sing N N 522 THR N H2 sing N N 523 THR CA C sing N N 524 THR CA CB sing N N 525 THR CA HA sing N N 526 THR C O doub N N 527 THR C OXT sing N N 528 THR CB OG1 sing N N 529 THR CB CG2 sing N N 530 THR CB HB sing N N 531 THR OG1 HG1 sing N N 532 THR CG2 HG21 sing N N 533 THR CG2 HG22 sing N N 534 THR CG2 HG23 sing N N 535 THR OXT HXT sing N N 536 TYR N CA sing N N 537 TYR N H sing N N 538 TYR N H2 sing N N 539 TYR CA C sing N N 540 TYR CA CB sing N N 541 TYR CA HA sing N N 542 TYR C O doub N N 543 TYR C OXT sing N N 544 TYR CB CG sing N N 545 TYR CB HB2 sing N N 546 TYR CB HB3 sing N N 547 TYR CG CD1 doub Y N 548 TYR CG CD2 sing Y N 549 TYR CD1 CE1 sing Y N 550 TYR CD1 HD1 sing N N 551 TYR CD2 CE2 doub Y N 552 TYR CD2 HD2 sing N N 553 TYR CE1 CZ doub Y N 554 TYR CE1 HE1 sing N N 555 TYR CE2 CZ sing Y N 556 TYR CE2 HE2 sing N N 557 TYR CZ OH sing N N 558 TYR OH HH sing N N 559 TYR OXT HXT sing N N 560 VAL N CA sing N N 561 VAL N H sing N N 562 VAL N H2 sing N N 563 VAL CA C sing N N 564 VAL CA CB sing N N 565 VAL CA HA sing N N 566 VAL C O doub N N 567 VAL C OXT sing N N 568 VAL CB CG1 sing N N 569 VAL CB CG2 sing N N 570 VAL CB HB sing N N 571 VAL CG1 HG11 sing N N 572 VAL CG1 HG12 sing N N 573 VAL CG1 HG13 sing N N 574 VAL CG2 HG21 sing N N 575 VAL CG2 HG22 sing N N 576 VAL CG2 HG23 sing N N 577 VAL OXT HXT sing N N 578 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2AGQ 'double helix' 2AGQ 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 B DC 17 1_555 -0.289 -0.078 -0.363 -5.752 -5.181 -6.605 1 B_DG1:DC17_C B 1 ? C 17 ? 19 1 1 A DG 2 1_555 B DC 16 1_555 0.020 -0.202 -0.201 7.639 -5.768 -0.002 2 B_DG2:DC16_C B 2 ? C 16 ? 19 1 1 A DC 3 1_555 B DG 15 1_555 -0.018 -0.393 -0.199 5.243 -11.559 -1.987 3 B_DC3:DG15_C B 3 ? C 15 ? 19 1 1 A DT 4 1_555 B DA 14 1_555 0.352 -0.205 -0.118 0.811 -7.688 1.619 4 B_DT4:DA14_C B 4 ? C 14 ? 20 1 1 A DA 5 1_555 B DT 13 1_555 0.349 0.057 -0.140 1.181 -7.764 1.704 5 B_DA5:DT13_C B 5 ? C 13 ? 20 1 1 A DC 6 1_555 B DG 12 1_555 0.259 0.038 -0.040 1.979 -5.922 4.207 6 B_DC6:DG12_C B 6 ? C 12 ? 19 1 1 A DA 7 1_555 B DT 11 1_555 0.334 -0.194 0.085 -0.288 -6.455 4.067 7 B_DA7:DT11_C B 7 ? C 11 ? 20 1 1 A DG 8 1_555 B DC 10 1_555 -0.169 -0.048 0.196 1.802 -4.103 0.235 8 B_DG8:DC10_C B 8 ? C 10 ? 19 1 1 A DG 9 1_555 B DC 9 1_555 -0.158 -0.111 -0.290 -4.242 -9.787 0.754 9 B_DG9:DC9_C B 9 ? C 9 ? 19 1 1 A DA 10 1_555 B DT 8 1_555 0.033 -0.192 -0.104 6.731 -3.990 0.447 10 B_DA10:DT8_C B 10 ? C 8 ? 20 1 1 A DC 11 1_555 B DG 7 1_555 0.157 -0.127 -0.300 5.675 1.336 -1.951 11 B_DC11:DG7_C B 11 ? C 7 ? 19 1 1 A DT 12 1_555 B DA 6 1_555 -0.225 -0.189 -0.547 11.108 -4.944 1.333 12 B_DT12:DA6_C B 12 ? C 6 ? 20 1 1 A DOC 13 1_555 B DG 5 1_555 0.344 -0.259 -0.467 3.425 -6.458 -2.399 13 B_DOC13:DG5_C B 13 ? C 5 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 B DC 17 1_555 A DG 2 1_555 B DC 16 1_555 0.593 0.134 3.076 -1.889 3.924 32.522 -0.395 -1.355 3.032 6.967 3.354 32.805 1 BB_DG1DG2:DC16DC17_CC B 1 ? C 17 ? B 2 ? C 16 ? 1 A DG 2 1_555 B DC 16 1_555 A DC 3 1_555 B DG 15 1_555 -0.899 -0.208 3.261 -3.614 2.563 34.614 -0.739 0.947 3.311 4.286 6.044 34.887 2 BB_DG2DC3:DG15DC16_CC B 2 ? C 16 ? B 3 ? C 15 ? 1 A DC 3 1_555 B DG 15 1_555 A DT 4 1_555 B DA 14 1_555 0.518 -0.140 3.409 2.500 8.349 39.812 -1.165 -0.456 3.339 12.086 -3.618 40.717 3 BB_DC3DT4:DA14DG15_CC B 3 ? C 15 ? B 4 ? C 14 ? 1 A DT 4 1_555 B DA 14 1_555 A DA 5 1_555 B DT 13 1_555 -0.217 0.477 3.367 1.644 13.624 33.002 -1.315 0.607 3.290 22.794 -2.750 35.668 4 BB_DT4DA5:DT13DA14_CC B 4 ? C 14 ? B 5 ? C 13 ? 1 A DA 5 1_555 B DT 13 1_555 A DC 6 1_555 B DG 12 1_555 0.083 -0.218 3.268 -1.503 7.063 29.284 -1.846 -0.462 3.123 13.709 2.916 30.142 5 BB_DA5DC6:DG12DT13_CC B 5 ? C 13 ? B 6 ? C 12 ? 1 A DC 6 1_555 B DG 12 1_555 A DA 7 1_555 B DT 11 1_555 0.312 0.550 3.356 2.054 9.142 38.632 -0.307 -0.209 3.406 13.576 -3.050 39.710 6 BB_DC6DA7:DT11DG12_CC B 6 ? C 12 ? B 7 ? C 11 ? 1 A DA 7 1_555 B DT 11 1_555 A DG 8 1_555 B DC 10 1_555 -0.084 -0.412 3.333 -3.086 0.351 31.515 -0.820 -0.427 3.321 0.644 5.664 31.664 7 BB_DA7DG8:DC10DT11_CC B 7 ? C 11 ? B 8 ? C 10 ? 1 A DG 8 1_555 B DC 10 1_555 A DG 9 1_555 B DC 9 1_555 -0.195 -0.747 3.633 3.933 2.487 35.916 -1.587 0.921 3.535 4.012 -6.345 36.207 8 BB_DG8DG9:DC9DC10_CC B 8 ? C 10 ? B 9 ? C 9 ? 1 A DG 9 1_555 B DC 9 1_555 A DA 10 1_555 B DT 8 1_555 0.282 -0.254 3.095 -0.179 2.112 31.592 -0.834 -0.548 3.070 3.873 0.328 31.661 9 BB_DG9DA10:DT8DC9_CC B 9 ? C 9 ? B 10 ? C 8 ? 1 A DA 10 1_555 B DT 8 1_555 A DC 11 1_555 B DG 7 1_555 0.307 -0.900 3.458 -0.182 4.143 32.770 -2.314 -0.573 3.321 7.307 0.321 33.025 10 BB_DA10DC11:DG7DT8_CC B 10 ? C 8 ? B 11 ? C 7 ? 1 A DC 11 1_555 B DG 7 1_555 A DT 12 1_555 B DA 6 1_555 -0.018 -0.705 3.296 1.887 3.679 26.039 -2.523 0.541 3.158 8.099 -4.155 26.360 11 BB_DC11DT12:DA6DG7_CC B 11 ? C 7 ? B 12 ? C 6 ? 1 A DT 12 1_555 B DA 6 1_555 A DOC 13 1_555 B DG 5 1_555 0.177 -0.661 3.610 0.278 7.803 35.612 -2.232 -0.242 3.395 12.573 -0.448 36.430 12 BB_DT12DOC13:DG5DA6_CC B 12 ? C 6 ? B 13 ? C 5 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'CALCIUM ION' CA 5 'MAGNESIUM ION' MG 6 ;2'-DEOXYADENOSINE 5'-TRIPHOSPHATE ; DTP 7 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1JX4 _pdbx_initial_refinement_model.details 'PDB ENTRY 1JX4' #