HEADER LUMINESCENT PROTEIN 27-JUL-05 2AH8 TITLE ROGFP1-R7. CYSTAL STRUCTURE ANALYSIS OF A RATE-ENHANCED VARIANT OF TITLE 2 REDOX-SENSITIVE GREEN FLUORESCENT PROTEIN IN THE OXIDIZED FORM. CAVEAT 2AH8 CHIRALITY ERROR AT CA OF LYS238B COMPND MOL_ID: 1; COMPND 2 MOLECULE: GREEN FLUORESCENT PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: GFP; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AEQUOREA VICTORIA; SOURCE 3 ORGANISM_TAXID: 6100; SOURCE 4 GENE: GFP; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: JM109(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PRSET-B KEYWDS BETA BARREL, CHROMOPHORE, DISULFIDE, LUMINESCENT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.B.CANNON,S.J.REMINGTON REVDAT 12 18-MAR-26 2AH8 1 SEQRES REVDAT 11 20-NOV-24 2AH8 1 REMARK REVDAT 10 15-NOV-23 2AH8 1 REMARK LINK ATOM REVDAT 9 23-AUG-23 2AH8 1 REMARK REVDAT 8 20-OCT-21 2AH8 1 REMARK SEQADV LINK REVDAT 7 29-NOV-17 2AH8 1 REMARK REVDAT 6 11-OCT-17 2AH8 1 REMARK REVDAT 5 21-JAN-15 2AH8 1 HET HETATM HETNAM LINK REVDAT 5 2 1 MODRES SEQRES REVDAT 4 13-JUL-11 2AH8 1 VERSN REVDAT 3 30-JUN-09 2AH8 1 SEQADV REVDAT 2 24-FEB-09 2AH8 1 VERSN REVDAT 1 21-MAR-06 2AH8 0 JRNL AUTH M.B.CANNON,S.J.REMINGTON JRNL TITL RE-ENGINEERING REDOX-SENSITIVE GREEN FLUORESCENT PROTEIN FOR JRNL TITL 2 IMPROVED RESPONSE RATE. JRNL REF PROTEIN SCI. V. 15 45 2006 JRNL REFN ISSN 0961-8368 JRNL PMID 16322566 JRNL DOI 10.1110/PS.051734306 REMARK 2 REMARK 2 RESOLUTION. 2.24 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.24 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 36457 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 3722 REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.2020 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 36885 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3546 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 163 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.014 ; NULL ; NULL REMARK 3 BOND ANGLES (DEGREES) : 2.600 ; NULL ; NULL REMARK 3 TORSION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES (A) : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : NULL ; NULL ; NULL REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : 0.80 REMARK 3 BSOL : 150.0 REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : TNT REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2AH8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-AUG-05. REMARK 100 THE DEPOSITION ID IS D_1000033891. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-NOV-03 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 7.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH3R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36457 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.63400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR 2.5 REMARK 200 STARTING MODEL: PDB ENTRY 1EMA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CITRATE, IMIDAZOLE, PH 7.6, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.27467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 26.13733 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 26.13733 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 52.27467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL UNIT IS A MONOMER. THERE ARE 2 BIOLOGICAL REMARK 300 UNITS IN THE ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 7960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -26.13733 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 3 CG CD CE NZ REMARK 470 GLU A 5 OE1 OE2 REMARK 470 THR A 9 OG1 CG2 REMARK 470 LEU A 15 CG CD1 CD2 REMARK 470 ASP A 19 OD1 OD2 REMARK 470 LYS A 26 CE NZ REMARK 470 SER A 30 OG REMARK 470 GLU A 32 OE1 OE2 REMARK 470 LYS A 41 CE NZ REMARK 470 LYS A 45 NZ REMARK 470 LYS A 52 CD CE NZ REMARK 470 ASP A 76 OD1 OD2 REMARK 470 LYS A 79 CG CD CE NZ REMARK 470 ARG A 80 NE CZ NH1 NH2 REMARK 470 LYS A 85 NZ REMARK 470 ALA A 87 CB REMARK 470 GLU A 90 CG CD OE1 OE2 REMARK 470 GLU A 95 CD OE1 OE2 REMARK 470 LYS A 101 CG CD CE NZ REMARK 470 LYS A 107 CD CE NZ REMARK 470 LYS A 113 CE NZ REMARK 470 GLU A 115 CG CD OE1 OE2 REMARK 470 ASP A 117 OD1 OD2 REMARK 470 THR A 118 OG1 CG2 REMARK 470 GLU A 124 CG CD OE1 OE2 REMARK 470 LYS A 126 CG CD CE NZ REMARK 470 LYS A 140 NZ REMARK 470 LYS A 156 NZ REMARK 470 LYS A 158 CB CG CD CE NZ REMARK 470 LYS A 162 CG CD CE NZ REMARK 470 ASN A 164 CG OD1 ND2 REMARK 470 LYS A 166 NZ REMARK 470 ASP A 173 CB CG OD1 OD2 REMARK 470 SER A 175 OG REMARK 470 GLN A 184 CG CD OE1 NE2 REMARK 470 ASP A 190 CG OD1 OD2 REMARK 470 ASN A 212 OD1 ND2 REMARK 470 LYS A 214 CG CD CE NZ REMARK 470 ARG A 215 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 221 CG CD1 CD2 REMARK 470 ASP A 234 OD1 OD2 REMARK 470 LYS A 238 C O REMARK 470 LYS B 3 CB CG CD CE NZ REMARK 470 GLU B 5 OE1 OE2 REMARK 470 ASP B 19 OD1 OD2 REMARK 470 LYS B 26 CD CE NZ REMARK 470 LYS B 41 CG CD CE NZ REMARK 470 LEU B 42 CD1 CD2 REMARK 470 LYS B 52 CD CE NZ REMARK 470 ARG B 80 CD NE CZ NH1 NH2 REMARK 470 LYS B 101 CG CD CE NZ REMARK 470 ASP B 102 CG OD1 OD2 REMARK 470 LYS B 107 CD CE NZ REMARK 470 LYS B 113 CE NZ REMARK 470 GLU B 124 CG CD OE1 OE2 REMARK 470 LYS B 126 CG CD CE NZ REMARK 470 ILE B 128 CG1 CG2 CD1 REMARK 470 ASP B 129 OD1 OD2 REMARK 470 LYS B 131 CD CE NZ REMARK 470 GLU B 132 CG CD OE1 OE2 REMARK 470 ASP B 133 OD1 OD2 REMARK 470 LYS B 140 NZ REMARK 470 ASP B 155 CB CG OD1 OD2 REMARK 470 LYS B 156 CG CD CE NZ REMARK 470 GLN B 157 CG CD OE1 NE2 REMARK 470 LYS B 158 CD CE NZ REMARK 470 LYS B 162 CG CD CE NZ REMARK 470 LYS B 166 NZ REMARK 470 ASP B 173 CB CG OD1 OD2 REMARK 470 SER B 175 OG REMARK 470 GLN B 184 CD OE1 NE2 REMARK 470 ASP B 190 OD1 OD2 REMARK 470 LYS B 214 CG CD CE NZ REMARK 470 LEU B 221 CG CD1 CD2 REMARK 470 ASP B 234 OD1 OD2 REMARK 470 LYS B 238 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C PHE B 64 N1 GYS B 66 1.32 REMARK 500 C PHE A 64 N1 GYS A 66 1.34 REMARK 500 C MET A 88 CD PRO A 89 1.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 6 CD GLU A 6 OE2 0.072 REMARK 500 GLU A 17 CD GLU A 17 OE2 0.085 REMARK 500 GLU A 111 CD GLU A 111 OE2 0.076 REMARK 500 GLU A 132 CD GLU A 132 OE2 0.071 REMARK 500 GLU A 172 CD GLU A 172 OE2 0.082 REMARK 500 GLU A 213 CD GLU A 213 OE2 0.080 REMARK 500 GLU A 235 CD GLU A 235 OE2 0.071 REMARK 500 GLU B 6 CD GLU B 6 OE2 0.087 REMARK 500 GLU B 95 CD GLU B 95 OE2 0.078 REMARK 500 GLU B 115 CD GLU B 115 OE2 0.089 REMARK 500 GLU B 142 CD GLU B 142 OE2 0.068 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 21 CB - CG - OD1 ANGL. DEV. = 8.8 DEGREES REMARK 500 ASP A 21 CB - CG - OD2 ANGL. DEV. = -8.0 DEGREES REMARK 500 ASP A 36 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 36 CB - CG - OD2 ANGL. DEV. = -8.8 DEGREES REMARK 500 ASP A 82 CB - CG - OD1 ANGL. DEV. = 8.0 DEGREES REMARK 500 ASP A 82 CB - CG - OD2 ANGL. DEV. = -8.0 DEGREES REMARK 500 MET A 88 CB - CA - C ANGL. DEV. = -14.1 DEGREES REMARK 500 MET A 88 N - CA - C ANGL. DEV. = 16.8 DEGREES REMARK 500 MET A 88 CA - C - N ANGL. DEV. = -17.4 DEGREES REMARK 500 MET A 88 O - C - N ANGL. DEV. = 11.7 DEGREES REMARK 500 PRO A 89 C - N - CA ANGL. DEV. = 25.4 DEGREES REMARK 500 PRO A 89 C - N - CD ANGL. DEV. = -67.0 DEGREES REMARK 500 PRO A 89 N - CA - C ANGL. DEV. = -17.4 DEGREES REMARK 500 THR A 97 N - CA - CB ANGL. DEV. = 11.9 DEGREES REMARK 500 ASP A 103 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP A 129 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP A 133 N - CA - CB ANGL. DEV. = 13.0 DEGREES REMARK 500 ASP A 133 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 MET A 153 N - CA - CB ANGL. DEV. = 12.0 DEGREES REMARK 500 ARG A 168 NE - CZ - NH1 ANGL. DEV. = 5.1 DEGREES REMARK 500 ARG A 168 NE - CZ - NH2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ASP A 180 CB - CG - OD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 ASP A 180 CB - CG - OD2 ANGL. DEV. = -7.2 DEGREES REMARK 500 ASP A 197 CB - CG - OD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 ASP A 197 CB - CG - OD2 ANGL. DEV. = -9.6 DEGREES REMARK 500 ASP A 210 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP A 210 CB - CG - OD2 ANGL. DEV. = -6.8 DEGREES REMARK 500 ASP A 216 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 216 CB - CG - OD2 ANGL. DEV. = -8.3 DEGREES REMARK 500 ASP B 36 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP B 36 CB - CG - OD2 ANGL. DEV. = -7.3 DEGREES REMARK 500 TYR B 39 CB - CG - CD2 ANGL. DEV. = -5.2 DEGREES REMARK 500 TYR B 39 CB - CG - CD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP B 76 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP B 76 CB - CG - OD2 ANGL. DEV. = -6.8 DEGREES REMARK 500 ASP B 82 CB - CG - OD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 ASP B 82 CB - CG - OD2 ANGL. DEV. = -7.9 DEGREES REMARK 500 ASP B 117 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP B 117 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ASP B 197 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 SER B 208 N - CA - CB ANGL. DEV. = 10.4 DEGREES REMARK 500 ASP B 210 CB - CG - OD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 ASP B 210 CB - CG - OD2 ANGL. DEV. = -11.5 DEGREES REMARK 500 ASP B 216 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP B 234 N - CA - CB ANGL. DEV. = -11.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 89 -54.55 -160.38 REMARK 500 ASP A 103 -159.99 -158.29 REMARK 500 SER A 175 -141.30 -96.52 REMARK 500 HIS A 199 -169.67 -168.21 REMARK 500 ASN A 212 30.17 -89.92 REMARK 500 ILE B 136 -72.02 -78.42 REMARK 500 SER B 175 -145.78 -81.96 REMARK 500 HIS B 199 -164.49 -171.39 REMARK 500 ALA B 227 -168.23 -164.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 239 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1JC0 RELATED DB: PDB REMARK 900 ROGFP2 IN THE REDUCED FORM. REMARK 900 RELATED ID: 1JC1 RELATED DB: PDB REMARK 900 ROGFP2 IN THE OXIDIZED FORM. REMARK 900 RELATED ID: 2AHA RELATED DB: PDB DBREF 2AH8 A 1 238 UNP P42212 GFP_AEQVI 1 238 DBREF 2AH8 B 1 238 UNP P42212 GFP_AEQVI 1 238 SEQADV 2AH8 SER A 48 UNP P42212 CYS 48 ENGINEERED MUTATION SEQADV 2AH8 GYS A 66 UNP P42212 SER 65 CHROMOPHORE SEQADV 2AH8 GYS A 66 UNP P42212 TYR 66 CHROMOPHORE SEQADV 2AH8 GYS A 66 UNP P42212 GLY 67 CHROMOPHORE SEQADV 2AH8 ARG A 80 UNP P42212 GLN 80 ENGINEERED MUTATION SEQADV 2AH8 CYS A 147 UNP P42212 SER 147 ENGINEERED MUTATION SEQADV 2AH8 LYS A 202 UNP P42212 SER 202 ENGINEERED MUTATION SEQADV 2AH8 CYS A 204 UNP P42212 GLN 204 ENGINEERED MUTATION SEQADV 2AH8 ARG A 223 UNP P42212 PHE 223 ENGINEERED MUTATION SEQADV 2AH8 SER B 48 UNP P42212 CYS 48 ENGINEERED MUTATION SEQADV 2AH8 GYS B 66 UNP P42212 SER 65 CHROMOPHORE SEQADV 2AH8 GYS B 66 UNP P42212 TYR 66 CHROMOPHORE SEQADV 2AH8 GYS B 66 UNP P42212 GLY 67 CHROMOPHORE SEQADV 2AH8 ARG B 80 UNP P42212 GLN 80 ENGINEERED MUTATION SEQADV 2AH8 CYS B 147 UNP P42212 SER 147 ENGINEERED MUTATION SEQADV 2AH8 LYS B 202 UNP P42212 SER 202 ENGINEERED MUTATION SEQADV 2AH8 CYS B 204 UNP P42212 GLN 204 ENGINEERED MUTATION SEQADV 2AH8 ARG B 223 UNP P42212 PHE 223 ENGINEERED MUTATION SEQRES 1 A 236 MET SER LYS GLY GLU GLU LEU PHE THR GLY VAL VAL PRO SEQRES 2 A 236 ILE LEU VAL GLU LEU ASP GLY ASP VAL ASN GLY HIS LYS SEQRES 3 A 236 PHE SER VAL SER GLY GLU GLY GLU GLY ASP ALA THR TYR SEQRES 4 A 236 GLY LYS LEU THR LEU LYS PHE ILE SER THR THR GLY LYS SEQRES 5 A 236 LEU PRO VAL PRO TRP PRO THR LEU VAL THR THR PHE GYS SEQRES 6 A 236 VAL GLN CYS PHE SER ARG TYR PRO ASP HIS MET LYS ARG SEQRES 7 A 236 HIS ASP PHE PHE LYS SER ALA MET PRO GLU GLY TYR VAL SEQRES 8 A 236 GLN GLU ARG THR ILE PHE PHE LYS ASP ASP GLY ASN TYR SEQRES 9 A 236 LYS THR ARG ALA GLU VAL LYS PHE GLU GLY ASP THR LEU SEQRES 10 A 236 VAL ASN ARG ILE GLU LEU LYS GLY ILE ASP PHE LYS GLU SEQRES 11 A 236 ASP GLY ASN ILE LEU GLY HIS LYS LEU GLU TYR ASN TYR SEQRES 12 A 236 ASN CYS HIS ASN VAL TYR ILE MET ALA ASP LYS GLN LYS SEQRES 13 A 236 ASN GLY ILE LYS VAL ASN PHE LYS ILE ARG HIS ASN ILE SEQRES 14 A 236 GLU ASP GLY SER VAL GLN LEU ALA ASP HIS TYR GLN GLN SEQRES 15 A 236 ASN THR PRO ILE GLY ASP GLY PRO VAL LEU LEU PRO ASP SEQRES 16 A 236 ASN HIS TYR LEU LYS THR CYS SER ALA LEU SER LYS ASP SEQRES 17 A 236 PRO ASN GLU LYS ARG ASP HIS MET VAL LEU LEU GLU ARG SEQRES 18 A 236 VAL THR ALA ALA GLY ILE THR HIS GLY MET ASP GLU LEU SEQRES 19 A 236 TYR LYS SEQRES 1 B 236 MET SER LYS GLY GLU GLU LEU PHE THR GLY VAL VAL PRO SEQRES 2 B 236 ILE LEU VAL GLU LEU ASP GLY ASP VAL ASN GLY HIS LYS SEQRES 3 B 236 PHE SER VAL SER GLY GLU GLY GLU GLY ASP ALA THR TYR SEQRES 4 B 236 GLY LYS LEU THR LEU LYS PHE ILE SER THR THR GLY LYS SEQRES 5 B 236 LEU PRO VAL PRO TRP PRO THR LEU VAL THR THR PHE GYS SEQRES 6 B 236 VAL GLN CYS PHE SER ARG TYR PRO ASP HIS MET LYS ARG SEQRES 7 B 236 HIS ASP PHE PHE LYS SER ALA MET PRO GLU GLY TYR VAL SEQRES 8 B 236 GLN GLU ARG THR ILE PHE PHE LYS ASP ASP GLY ASN TYR SEQRES 9 B 236 LYS THR ARG ALA GLU VAL LYS PHE GLU GLY ASP THR LEU SEQRES 10 B 236 VAL ASN ARG ILE GLU LEU LYS GLY ILE ASP PHE LYS GLU SEQRES 11 B 236 ASP GLY ASN ILE LEU GLY HIS LYS LEU GLU TYR ASN TYR SEQRES 12 B 236 ASN CYS HIS ASN VAL TYR ILE MET ALA ASP LYS GLN LYS SEQRES 13 B 236 ASN GLY ILE LYS VAL ASN PHE LYS ILE ARG HIS ASN ILE SEQRES 14 B 236 GLU ASP GLY SER VAL GLN LEU ALA ASP HIS TYR GLN GLN SEQRES 15 B 236 ASN THR PRO ILE GLY ASP GLY PRO VAL LEU LEU PRO ASP SEQRES 16 B 236 ASN HIS TYR LEU LYS THR CYS SER ALA LEU SER LYS ASP SEQRES 17 B 236 PRO ASN GLU LYS ARG ASP HIS MET VAL LEU LEU GLU ARG SEQRES 18 B 236 VAL THR ALA ALA GLY ILE THR HIS GLY MET ASP GLU LEU SEQRES 19 B 236 TYR LYS MODRES 2AH8 GYS A 66 SER MODRES 2AH8 GYS A 66 TYR MODRES 2AH8 GYS A 66 GLY MODRES 2AH8 GYS B 66 SER MODRES 2AH8 GYS B 66 TYR MODRES 2AH8 GYS B 66 GLY HET GYS A 66 21 HET GYS B 66 21 HET IMD A 239 5 HETNAM GYS [(4Z)-2-(1-AMINO-2-HYDROXYETHYL)-4-(4- HETNAM 2 GYS HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1- HETNAM 3 GYS YL]ACETIC ACID HETNAM IMD IMIDAZOLE HETSYN GYS CHROMOPHORE (SER-TYR-GLY) FORMUL 1 GYS 2(C14 H15 N3 O5) FORMUL 3 IMD C3 H5 N2 1+ FORMUL 4 HOH *163(H2 O) HELIX 1 1 LYS A 3 THR A 9 5 7 HELIX 2 2 PRO A 56 VAL A 61 5 6 HELIX 3 3 VAL A 68 SER A 72 5 5 HELIX 4 4 PRO A 75 HIS A 81 5 7 HELIX 5 5 ASP A 82 ALA A 87 1 6 HELIX 6 6 LYS B 3 PHE B 8 1 6 HELIX 7 7 PRO B 56 VAL B 61 5 6 HELIX 8 8 VAL B 68 SER B 72 5 5 HELIX 9 9 PRO B 75 HIS B 81 5 7 HELIX 10 10 ASP B 82 ALA B 87 1 6 SHEET 1 A12 VAL A 12 VAL A 22 0 SHEET 2 A12 HIS A 25 ASP A 36 -1 O GLY A 33 N ILE A 14 SHEET 3 A12 LYS A 41 SER A 48 -1 O ILE A 47 N SER A 30 SHEET 4 A12 HIS A 217 ALA A 227 -1 O LEU A 220 N LEU A 44 SHEET 5 A12 HIS A 199 SER A 208 -1 N ALA A 206 O LEU A 221 SHEET 6 A12 HIS A 148 ASP A 155 -1 N ILE A 152 O HIS A 199 SHEET 7 A12 GLY A 160 ASN A 170 -1 O GLY A 160 N ASP A 155 SHEET 8 A12 VAL A 176 PRO A 187 -1 O GLN A 177 N HIS A 169 SHEET 9 A12 TYR A 92 PHE A 100 -1 N PHE A 99 O ASP A 180 SHEET 10 A12 ASN A 105 GLU A 115 -1 O ALA A 110 N GLN A 94 SHEET 11 A12 THR A 118 ILE A 128 -1 O THR A 118 N GLU A 115 SHEET 12 A12 VAL A 12 VAL A 22 1 N GLU A 17 O ILE A 123 SHEET 1 B12 VAL B 11 VAL B 22 0 SHEET 2 B12 HIS B 25 ASP B 36 -1 O GLY B 33 N ILE B 14 SHEET 3 B12 LYS B 41 SER B 48 -1 O LYS B 41 N ASP B 36 SHEET 4 B12 HIS B 217 ALA B 227 -1 O MET B 218 N PHE B 46 SHEET 5 B12 HIS B 199 SER B 208 -1 N LYS B 202 O THR B 225 SHEET 6 B12 HIS B 148 ASP B 155 -1 N ILE B 152 O HIS B 199 SHEET 7 B12 GLY B 160 ASN B 170 -1 O GLY B 160 N ASP B 155 SHEET 8 B12 VAL B 176 PRO B 187 -1 O GLN B 177 N HIS B 169 SHEET 9 B12 TYR B 92 PHE B 100 -1 N VAL B 93 O THR B 186 SHEET 10 B12 ASN B 105 GLU B 115 -1 O THR B 108 N ARG B 96 SHEET 11 B12 THR B 118 ILE B 128 -1 O THR B 118 N GLU B 115 SHEET 12 B12 VAL B 11 VAL B 22 1 N ASP B 21 O GLY B 127 SSBOND 1 CYS A 147 CYS A 204 1555 1555 2.05 SSBOND 2 CYS B 147 CYS B 204 1555 1555 2.02 LINK C3 GYS A 66 N VAL A 68 1555 1555 1.33 LINK C3 GYS B 66 N VAL B 68 1555 1555 1.31 CISPEP 1 MET B 88 PRO B 89 0 4.30 SITE 1 AC1 4 ILE A 152 ASN A 198 HIS A 199 HOH A 275 CRYST1 126.297 126.297 78.412 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007918 0.004571 0.000000 0.00000 SCALE2 0.000000 0.009143 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012755 0.00000 CONECT 443 446 CONECT 444 445 CONECT 445 444 446 CONECT 446 443 445 447 CONECT 447 446 448 449 CONECT 448 447 452 CONECT 449 447 450 453 CONECT 450 449 451 452 CONECT 451 450 CONECT 452 448 450 454 CONECT 453 449 462 CONECT 454 452 455 CONECT 455 454 456 457 CONECT 456 455 458 CONECT 457 455 459 CONECT 458 456 460 CONECT 459 457 460 CONECT 460 458 459 461 CONECT 461 460 CONECT 462 453 463 464 CONECT 463 462 CONECT 464 462 CONECT 1090 1521 CONECT 1521 1090 CONECT 2215 2218 CONECT 2216 2217 CONECT 2217 2216 2218 CONECT 2218 2215 2217 2219 CONECT 2219 2218 2220 2221 CONECT 2220 2219 2224 CONECT 2221 2219 2222 2225 CONECT 2222 2221 2223 2224 CONECT 2223 2222 CONECT 2224 2220 2222 2226 CONECT 2225 2221 2234 CONECT 2226 2224 2227 CONECT 2227 2226 2228 2229 CONECT 2228 2227 2230 CONECT 2229 2227 2231 CONECT 2230 2228 2232 CONECT 2231 2229 2232 CONECT 2232 2230 2231 2233 CONECT 2233 2232 CONECT 2234 2225 2235 2236 CONECT 2235 2234 CONECT 2236 2234 CONECT 2867 3294 CONECT 3294 2867 CONECT 3549 3550 3553 CONECT 3550 3549 3551 CONECT 3551 3550 3552 CONECT 3552 3551 3553 CONECT 3553 3549 3552 MASTER 439 0 3 10 24 0 1 6 3714 2 53 38 END