HEADER LYASE 27-JUL-05 2AHC TITLE CHORISMATE LYASE WITH INHIBITOR VANILATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHORISMATE LYASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 4.1.3.40; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: UBIC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PSE380 KEYWDS UNIQUE FOLD, UBIQUINONE PATHWAY, 123654 ANTIPARALLEL SHEET, INTERNAL KEYWDS 2 ACTIVE SITE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR D.T.GALLAGHER,N.N.SMITH REVDAT 7 23-AUG-23 2AHC 1 REMARK SEQADV REVDAT 6 11-OCT-17 2AHC 1 REMARK REVDAT 5 13-JUL-11 2AHC 1 VERSN REVDAT 4 26-JAN-11 2AHC 1 HETSYN REVDAT 3 24-FEB-09 2AHC 1 VERSN REVDAT 2 14-FEB-06 2AHC 1 JRNL REVDAT 1 31-JAN-06 2AHC 0 JRNL AUTH N.N.SMITH,A.E.ROITBERG,E.RIVERA,A.HOWARD,M.J.HOLDEN, JRNL AUTH 2 M.MAYHEW,S.KAISTHA,D.T.GALLAGHER JRNL TITL STRUCTURAL ANALYSIS OF LIGAND BINDING AND CATALYSIS IN JRNL TITL 2 CHORISMATE LYASE JRNL REF ARCH.BIOCHEM.BIOPHYS. V. 445 72 2006 JRNL REFN ISSN 0003-9861 JRNL PMID 16343413 JRNL DOI 10.1016/J.ABB.2005.10.026 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 999999.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 27664 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.262 REMARK 3 FREE R VALUE : 0.314 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1091 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.016 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.55 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.20 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4191 REMARK 3 BIN R VALUE (WORKING SET) : 0.2810 REMARK 3 BIN FREE R VALUE : 0.3310 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 157 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.039 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5260 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 119 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.11000 REMARK 3 B22 (A**2) : 3.98000 REMARK 3 B33 (A**2) : -2.56000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.32 REMARK 3 ESD FROM SIGMAA (A) : 0.38 REMARK 3 LOW RESOLUTION CUTOFF (A) : 12.0 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.24 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.016 REMARK 3 BOND ANGLES (DEGREES) : 2.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.600 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.820 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.730 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.910 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.360 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.40 REMARK 3 BSOL : 56.23 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : VNL.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : VNL.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2AHC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-AUG-05. REMARK 100 THE DEPOSITION ID IS D_1000033895. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAR-01 REMARK 200 TEMPERATURE (KELVIN) : 100. REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : DOUBLE MIRROR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : X-GEN REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33472 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 12.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.0 REMARK 200 DATA REDUNDANCY : 2.100 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.80 REMARK 200 R MERGE FOR SHELL (I) : 0.09300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1FW9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 QUATERNARY STRUCTURE FOR THIS ENTRY: MONOMERIC REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC REMARK 300 UNIT WHICH CONSISTS OF 4 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP D 21 N GLN D 23 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS B 108 O ASP D 21 1655 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 18 C - N - CA ANGL. DEV. = 9.2 DEGREES REMARK 500 LEU A 88 CA - CB - CG ANGL. DEV. = 14.9 DEGREES REMARK 500 GLY A 115 N - CA - C ANGL. DEV. = 25.2 DEGREES REMARK 500 LEU A 124 CA - CB - CG ANGL. DEV. = 14.8 DEGREES REMARK 500 LEU A 163 N - CA - C ANGL. DEV. = -19.1 DEGREES REMARK 500 GLY B 115 N - CA - C ANGL. DEV. = 19.9 DEGREES REMARK 500 ARG B 116 N - CA - C ANGL. DEV. = -25.6 DEGREES REMARK 500 LEU B 144 CA - CB - CG ANGL. DEV. = 14.6 DEGREES REMARK 500 LYS C 15 N - CA - C ANGL. DEV. = 17.0 DEGREES REMARK 500 PRO C 22 C - N - CA ANGL. DEV. = 10.3 DEGREES REMARK 500 GLN C 23 N - CA - C ANGL. DEV. = -23.2 DEGREES REMARK 500 ALA D 19 N - CA - C ANGL. DEV. = 18.0 DEGREES REMARK 500 SER D 33 N - CA - C ANGL. DEV. = -21.5 DEGREES REMARK 500 LEU D 104 CA - CB - CG ANGL. DEV. = 14.2 DEGREES REMARK 500 GLY D 115 N - CA - C ANGL. DEV. = 17.4 DEGREES REMARK 500 ARG D 116 N - CA - C ANGL. DEV. = -24.5 DEGREES REMARK 500 TYR D 117 N - CA - C ANGL. DEV. = -20.3 DEGREES REMARK 500 LEU D 152 CA - CB - CG ANGL. DEV. = 15.9 DEGREES REMARK 500 LEU D 153 CA - CB - CG ANGL. DEV. = 16.0 DEGREES REMARK 500 PRO D 162 C - N - CA ANGL. DEV. = 9.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 14 26.93 -179.35 REMARK 500 LYS A 15 -98.01 44.32 REMARK 500 GLU A 16 89.91 30.81 REMARK 500 ILE A 17 97.77 -53.18 REMARK 500 PRO A 18 99.53 -30.70 REMARK 500 ALA A 19 -20.58 -38.73 REMARK 500 ASP A 21 131.51 -24.19 REMARK 500 PRO A 22 33.63 -63.40 REMARK 500 GLN A 41 9.22 -63.72 REMARK 500 LEU A 99 39.90 -78.09 REMARK 500 PRO A 102 -9.80 -59.92 REMARK 500 LYS A 111 64.20 -104.30 REMARK 500 ARG A 116 -63.79 59.03 REMARK 500 TYR A 117 9.98 -69.95 REMARK 500 LEU A 118 -17.92 -151.86 REMARK 500 PHE A 119 49.82 -91.04 REMARK 500 PHE A 128 172.66 176.13 REMARK 500 ASP A 134 143.66 174.88 REMARK 500 PRO A 159 -37.39 -38.36 REMARK 500 PRO A 162 40.89 -73.10 REMARK 500 LEU A 163 -167.32 -124.99 REMARK 500 ALA B 19 52.34 32.60 REMARK 500 ARG B 51 132.30 -174.21 REMARK 500 ARG B 116 -13.91 -171.66 REMARK 500 THR B 120 -94.56 -150.38 REMARK 500 SER B 121 13.56 -59.21 REMARK 500 ASP B 134 119.30 179.44 REMARK 500 SER C 14 93.98 178.23 REMARK 500 LYS C 15 -21.33 -32.14 REMARK 500 LEU C 20 22.76 -73.08 REMARK 500 ASP C 21 71.91 172.15 REMARK 500 PRO C 22 83.76 -46.59 REMARK 500 GLN C 23 -5.81 -176.66 REMARK 500 LEU C 24 41.75 -95.43 REMARK 500 LEU C 25 22.71 -176.35 REMARK 500 ASP C 26 14.01 -147.91 REMARK 500 TRP C 27 -77.46 -147.38 REMARK 500 LEU C 28 48.53 -75.71 REMARK 500 LEU C 29 174.29 178.89 REMARK 500 LEU C 30 -132.57 135.83 REMARK 500 GLU C 31 -8.07 -152.13 REMARK 500 SER C 33 141.94 11.89 REMARK 500 LEU C 118 -76.77 -79.33 REMARK 500 THR C 120 -76.43 -79.30 REMARK 500 SER C 122 -171.01 -58.51 REMARK 500 PHE C 128 156.54 178.22 REMARK 500 ASP C 134 141.88 -176.22 REMARK 500 ALA D 19 98.11 24.98 REMARK 500 ASP D 21 111.65 81.32 REMARK 500 GLN D 23 65.09 -108.18 REMARK 500 REMARK 500 THIS ENTRY HAS 59 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR B 117 0.08 SIDE CHAIN REMARK 500 TYR D 13 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE VNL A 166 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE VNL B 266 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE VNL C 366 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE VNL D 466 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1TT8 RELATED DB: PDB REMARK 900 PRODUCT COMPLEX REMARK 900 RELATED ID: 1XLR RELATED DB: PDB REMARK 900 VAN COMPLEX WITH G90A MUTATION DBREF 2AHC A 1 164 UNP P26602 UBIC_ECOLI 1 164 DBREF 2AHC B 1 164 UNP P26602 UBIC_ECOLI 1 164 DBREF 2AHC C 1 164 UNP P26602 UBIC_ECOLI 1 164 DBREF 2AHC D 1 164 UNP P26602 UBIC_ECOLI 1 164 SEQADV 2AHC SER A 14 UNP P26602 CYS 14 ENGINEERED MUTATION SEQADV 2AHC SER A 81 UNP P26602 CYS 81 ENGINEERED MUTATION SEQADV 2AHC SER B 14 UNP P26602 CYS 14 ENGINEERED MUTATION SEQADV 2AHC SER B 81 UNP P26602 CYS 81 ENGINEERED MUTATION SEQADV 2AHC SER C 14 UNP P26602 CYS 14 ENGINEERED MUTATION SEQADV 2AHC SER C 81 UNP P26602 CYS 81 ENGINEERED MUTATION SEQADV 2AHC SER D 14 UNP P26602 CYS 14 ENGINEERED MUTATION SEQADV 2AHC SER D 81 UNP P26602 CYS 81 ENGINEERED MUTATION SEQRES 1 A 164 SER HIS PRO ALA LEU THR GLN LEU ARG ALA LEU ARG TYR SEQRES 2 A 164 SER LYS GLU ILE PRO ALA LEU ASP PRO GLN LEU LEU ASP SEQRES 3 A 164 TRP LEU LEU LEU GLU ASP SER MET THR LYS ARG PHE GLU SEQRES 4 A 164 GLN GLN GLY LYS THR VAL SER VAL THR MET ILE ARG GLU SEQRES 5 A 164 GLY PHE VAL GLU GLN ASN GLU ILE PRO GLU GLU LEU PRO SEQRES 6 A 164 LEU LEU PRO LYS GLU SER ARG TYR TRP LEU ARG GLU ILE SEQRES 7 A 164 LEU LEU SER ALA ASP GLY GLU PRO TRP LEU ALA GLY ARG SEQRES 8 A 164 THR VAL VAL PRO VAL SER THR LEU SER GLY PRO GLU LEU SEQRES 9 A 164 ALA LEU GLN LYS LEU GLY LYS THR PRO LEU GLY ARG TYR SEQRES 10 A 164 LEU PHE THR SER SER THR LEU THR ARG ASP PHE ILE GLU SEQRES 11 A 164 ILE GLY ARG ASP ALA GLY LEU TRP GLY ARG ARG SER ARG SEQRES 12 A 164 LEU ARG LEU SER GLY LYS PRO LEU LEU LEU THR GLU LEU SEQRES 13 A 164 PHE LEU PRO ALA SER PRO LEU TYR SEQRES 1 B 164 SER HIS PRO ALA LEU THR GLN LEU ARG ALA LEU ARG TYR SEQRES 2 B 164 SER LYS GLU ILE PRO ALA LEU ASP PRO GLN LEU LEU ASP SEQRES 3 B 164 TRP LEU LEU LEU GLU ASP SER MET THR LYS ARG PHE GLU SEQRES 4 B 164 GLN GLN GLY LYS THR VAL SER VAL THR MET ILE ARG GLU SEQRES 5 B 164 GLY PHE VAL GLU GLN ASN GLU ILE PRO GLU GLU LEU PRO SEQRES 6 B 164 LEU LEU PRO LYS GLU SER ARG TYR TRP LEU ARG GLU ILE SEQRES 7 B 164 LEU LEU SER ALA ASP GLY GLU PRO TRP LEU ALA GLY ARG SEQRES 8 B 164 THR VAL VAL PRO VAL SER THR LEU SER GLY PRO GLU LEU SEQRES 9 B 164 ALA LEU GLN LYS LEU GLY LYS THR PRO LEU GLY ARG TYR SEQRES 10 B 164 LEU PHE THR SER SER THR LEU THR ARG ASP PHE ILE GLU SEQRES 11 B 164 ILE GLY ARG ASP ALA GLY LEU TRP GLY ARG ARG SER ARG SEQRES 12 B 164 LEU ARG LEU SER GLY LYS PRO LEU LEU LEU THR GLU LEU SEQRES 13 B 164 PHE LEU PRO ALA SER PRO LEU TYR SEQRES 1 C 164 SER HIS PRO ALA LEU THR GLN LEU ARG ALA LEU ARG TYR SEQRES 2 C 164 SER LYS GLU ILE PRO ALA LEU ASP PRO GLN LEU LEU ASP SEQRES 3 C 164 TRP LEU LEU LEU GLU ASP SER MET THR LYS ARG PHE GLU SEQRES 4 C 164 GLN GLN GLY LYS THR VAL SER VAL THR MET ILE ARG GLU SEQRES 5 C 164 GLY PHE VAL GLU GLN ASN GLU ILE PRO GLU GLU LEU PRO SEQRES 6 C 164 LEU LEU PRO LYS GLU SER ARG TYR TRP LEU ARG GLU ILE SEQRES 7 C 164 LEU LEU SER ALA ASP GLY GLU PRO TRP LEU ALA GLY ARG SEQRES 8 C 164 THR VAL VAL PRO VAL SER THR LEU SER GLY PRO GLU LEU SEQRES 9 C 164 ALA LEU GLN LYS LEU GLY LYS THR PRO LEU GLY ARG TYR SEQRES 10 C 164 LEU PHE THR SER SER THR LEU THR ARG ASP PHE ILE GLU SEQRES 11 C 164 ILE GLY ARG ASP ALA GLY LEU TRP GLY ARG ARG SER ARG SEQRES 12 C 164 LEU ARG LEU SER GLY LYS PRO LEU LEU LEU THR GLU LEU SEQRES 13 C 164 PHE LEU PRO ALA SER PRO LEU TYR SEQRES 1 D 164 SER HIS PRO ALA LEU THR GLN LEU ARG ALA LEU ARG TYR SEQRES 2 D 164 SER LYS GLU ILE PRO ALA LEU ASP PRO GLN LEU LEU ASP SEQRES 3 D 164 TRP LEU LEU LEU GLU ASP SER MET THR LYS ARG PHE GLU SEQRES 4 D 164 GLN GLN GLY LYS THR VAL SER VAL THR MET ILE ARG GLU SEQRES 5 D 164 GLY PHE VAL GLU GLN ASN GLU ILE PRO GLU GLU LEU PRO SEQRES 6 D 164 LEU LEU PRO LYS GLU SER ARG TYR TRP LEU ARG GLU ILE SEQRES 7 D 164 LEU LEU SER ALA ASP GLY GLU PRO TRP LEU ALA GLY ARG SEQRES 8 D 164 THR VAL VAL PRO VAL SER THR LEU SER GLY PRO GLU LEU SEQRES 9 D 164 ALA LEU GLN LYS LEU GLY LYS THR PRO LEU GLY ARG TYR SEQRES 10 D 164 LEU PHE THR SER SER THR LEU THR ARG ASP PHE ILE GLU SEQRES 11 D 164 ILE GLY ARG ASP ALA GLY LEU TRP GLY ARG ARG SER ARG SEQRES 12 D 164 LEU ARG LEU SER GLY LYS PRO LEU LEU LEU THR GLU LEU SEQRES 13 D 164 PHE LEU PRO ALA SER PRO LEU TYR HET VNL A 166 12 HET VNL B 266 12 HET VNL C 366 12 HET VNL D 466 12 HETNAM VNL 4-HYDROXY-3-METHOXYBENZOATE HETSYN VNL VANILLATE FORMUL 5 VNL 4(C8 H7 O4 1-) FORMUL 9 HOH *119(H2 O) HELIX 1 1 HIS A 2 LEU A 11 1 10 HELIX 2 2 LEU A 24 LEU A 29 1 6 HELIX 3 3 SER A 33 GLN A 41 1 9 HELIX 4 4 GLU A 56 ILE A 60 5 5 HELIX 5 5 GLU A 63 LEU A 67 5 5 HELIX 6 6 SER A 97 LEU A 99 5 3 HELIX 7 7 SER A 100 LYS A 108 5 9 HELIX 8 8 HIS B 2 ARG B 9 1 8 HELIX 9 9 ASP B 21 GLN B 23 5 3 HELIX 10 10 LEU B 24 LEU B 29 1 6 HELIX 11 11 SER B 33 GLN B 40 1 8 HELIX 12 12 GLU B 56 ILE B 60 5 5 HELIX 13 13 GLU B 63 LEU B 67 5 5 HELIX 14 14 SER B 97 LYS B 108 5 12 HELIX 15 15 HIS C 2 ALA C 10 1 9 HELIX 16 16 MET C 34 GLN C 40 1 7 HELIX 17 17 GLU C 56 ILE C 60 5 5 HELIX 18 18 GLU C 63 LEU C 67 5 5 HELIX 19 19 SER C 97 LEU C 99 5 3 HELIX 20 20 SER C 100 LYS C 108 5 9 HELIX 21 21 HIS D 2 ARG D 9 1 8 HELIX 22 22 LEU D 24 LEU D 29 1 6 HELIX 23 23 SER D 33 GLN D 41 1 9 HELIX 24 24 GLU D 56 ILE D 60 5 5 HELIX 25 25 GLU D 63 LEU D 67 5 5 HELIX 26 26 SER D 97 LYS D 108 5 12 SHEET 1 A 7 ARG A 12 TYR A 13 0 SHEET 2 A 7 LEU A 124 ASP A 134 -1 O ARG A 133 N ARG A 12 SHEET 3 A 7 LEU A 137 LEU A 146 -1 O GLY A 139 N GLY A 132 SHEET 4 A 7 LYS A 149 PHE A 157 -1 O LEU A 153 N SER A 142 SHEET 5 A 7 GLU A 85 PRO A 95 -1 N VAL A 93 O LEU A 152 SHEET 6 A 7 TYR A 73 ALA A 82 -1 N LEU A 80 O LEU A 88 SHEET 7 A 7 VAL A 45 VAL A 55 -1 N GLY A 53 O LEU A 75 SHEET 1 B 7 ARG B 12 SER B 14 0 SHEET 2 B 7 LEU B 124 ASP B 134 -1 O ILE B 131 N SER B 14 SHEET 3 B 7 LEU B 137 LEU B 146 -1 O ARG B 141 N GLU B 130 SHEET 4 B 7 LYS B 149 PHE B 157 -1 O LEU B 153 N SER B 142 SHEET 5 B 7 GLU B 85 PRO B 95 -1 N VAL B 93 O LEU B 152 SHEET 6 B 7 TYR B 73 ALA B 82 -1 N TRP B 74 O VAL B 94 SHEET 7 B 7 VAL B 45 VAL B 55 -1 N SER B 46 O SER B 81 SHEET 1 C 7 ARG C 12 TYR C 13 0 SHEET 2 C 7 LEU C 124 ASP C 134 -1 O ARG C 133 N ARG C 12 SHEET 3 C 7 LEU C 137 LEU C 146 -1 O GLY C 139 N GLY C 132 SHEET 4 C 7 LYS C 149 PHE C 157 -1 O LEU C 153 N SER C 142 SHEET 5 C 7 GLU C 85 PRO C 95 -1 N VAL C 93 O LEU C 152 SHEET 6 C 7 TYR C 73 ALA C 82 -1 N TRP C 74 O VAL C 94 SHEET 7 C 7 VAL C 45 VAL C 55 -1 N ARG C 51 O GLU C 77 SHEET 1 D 7 ARG D 12 SER D 14 0 SHEET 2 D 7 LEU D 124 ASP D 134 -1 O ILE D 131 N SER D 14 SHEET 3 D 7 LEU D 137 LEU D 146 -1 O GLY D 139 N GLY D 132 SHEET 4 D 7 LYS D 149 PHE D 157 -1 O LEU D 153 N SER D 142 SHEET 5 D 7 GLU D 85 PRO D 95 -1 N ARG D 91 O THR D 154 SHEET 6 D 7 TYR D 73 ALA D 82 -1 N ARG D 76 O THR D 92 SHEET 7 D 7 VAL D 45 VAL D 55 -1 N SER D 46 O SER D 81 SITE 1 AC1 7 MET A 34 ARG A 76 ILE A 78 LEU A 114 SITE 2 AC1 7 LEU A 153 GLU A 155 HOH A 201 SITE 1 AC2 10 MET B 34 THR B 35 ARG B 76 ILE B 78 SITE 2 AC2 10 THR B 92 PRO B 113 LEU B 114 THR B 154 SITE 3 AC2 10 GLU B 155 HOH B 301 SITE 1 AC3 5 ARG C 76 PRO C 113 LEU C 114 THR C 154 SITE 2 AC3 5 GLU C 155 SITE 1 AC4 11 MET D 34 THR D 35 ARG D 76 ILE D 78 SITE 2 AC4 11 LEU D 80 THR D 92 PRO D 113 LEU D 114 SITE 3 AC4 11 THR D 154 GLU D 155 HOH D 501 CRYST1 56.173 58.560 70.646 70.24 67.40 67.17 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017802 -0.007494 -0.005893 0.00000 SCALE2 0.000000 0.018528 -0.004220 0.00000 SCALE3 0.000000 0.000000 0.015725 0.00000