HEADER    CELL INVASION                           29-JUL-05   2AIC              
OBSLTE     27-MAR-07 2AIC      2JOL                                             
TITLE     NMR STRUCTURE OF THE CATALYTIC DOMAIN OF GUANINE NUCLEOTIDE           
TITLE    2 EXCHANGE FACTOR BOPE FROM BURKHOLDERIA PSEUDOMALLEI                  
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: GUANINE NUCLEOTIDE EXCHANGE FACTOR BOPE;                   
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: GEF DOMAIN, RESIDUES 78-261;                               
COMPND   5 SYNONYM: G-NUCLEOTIDE EXCHANGE FACTOR;                               
COMPND   6 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: BURKHOLDERIA PSEUDOMALLEI;                      
SOURCE   3 ORGANISM_COMMON: BACTERIA;                                           
SOURCE   4 STRAIN: K96243;                                                      
SOURCE   5 GENE: BOPE;                                                          
SOURCE   6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   7 EXPRESSION_SYSTEM_COMMON: BACTERIA;                                  
SOURCE   8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);                                 
SOURCE   9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE  10 EXPRESSION_SYSTEM_PLASMID: PGEX-2T                                   
KEYWDS    THREE-HELIX BUNDLES                                                   
EXPDTA    NMR, 20 STRUCTURES                                                    
AUTHOR    H.L.WU,A.UPADHYAY,C.WILLIAMS,E.E.GALYOV,J.M.H.ELSEN,S.BAGBY           
REVDAT   2   27-MAR-07 2AIC    1       OBSLTE                                   
REVDAT   1   21-NOV-06 2AIC    0                                                
JRNL        AUTH   H.L.WU,A.UPADHYAY,C.WILLIAMS,E.E.GALYOV,                     
JRNL        AUTH 2 J.M.H.ELSEN,S.BAGBY                                          
JRNL        TITL   GUANINE NUCLEOTIDE EXCHANGE FACTOR BOPE FROM                 
JRNL        TITL 2 BURKHOLDERIA PSEUDOMALLEI ADOPTS A COMPACT VERSION           
JRNL        TITL 3 OF THE SALMONELLA SOPE/SOPE2 FOLD                            
JRNL        REF    TO BE PUBLISHED                                              
JRNL        REFN                                                                
REMARK   1                                                                      
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : PROCHECK-NMR V.3.5.4                                 
REMARK   3   AUTHORS     : LASKOWSKI, R.A. ET AL                                
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 2AIC COMPLIES WITH FORMAT V. 3.0, 1-DEC-2006                         
REMARK   4                                                                      
REMARK   4 THIS FILE IS A TEST VERSION.                                         
REMARK   4                                                                      
REMARK   4 THIS IS THE REMEDIATED VERSION OF THIS PDB ENTRY.                    
REMARK   4 REMEDIATED DATA FILE REVISION 3.100 (2007-03-17)                     
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-SEP-2005.                
REMARK 100 THE RCSB ID CODE IS RCSB033930.                                      
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 298                                
REMARK 210  PH                             : 5.5                                
REMARK 210  IONIC STRENGTH                 : 50 MM NACL                         
REMARK 210  PRESSURE                       : AMBIENT                            
REMARK 210  SAMPLE CONTENTS                : 10 MG OF BOPE IN 0.5 ML OF 20      
REMARK 210                                   MM POTASSIUM PHOSPHATE, PH         
REMARK 210                                   5.5, 50MM NACL, 10 MM DTT, 1       
REMARK 210                                   MM EDTA, 1MM BENZAMIDINE 50 UM     
REMARK 210                                   NAN3, 95% H2O AND 5% D2O; 10       
REMARK 210                                   MG OF BOPE IN 0.5 ML OF 20 MM      
REMARK 210                                   POTASSIUM PHOSPHATE, PH 5.5,       
REMARK 210                                   50MM NACL, 10 MM DTT, 1 MM         
REMARK 210                                   EDTA, 1MM BENZAMIDINE 50 UM        
REMARK 210                                   NAN3 AND 100% D2O                  
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 2D TOCSY, 3D_13C-SEPARATED_        
REMARK 210                                   NOESY, 3D_15N-SEPARATED_NOESY,     
REMARK 210                                   2D NOESY                           
REMARK 210  SPECTROMETER FIELD STRENGTH    : 600 MHZ                            
REMARK 210  SPECTROMETER MODEL             : INOVA                              
REMARK 210  SPECTROMETER MANUFACTURER      : VARIAN                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : NMRPIPE, TALOS 98.040.21.02,       
REMARK 210                                   XPLOR-NIH 2.9.6, SPARKY 3.110,     
REMARK 210                                   VNMR 6.1C                          
REMARK 210   METHOD USED                   : SIMULATED ANNEALING                
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 100                                
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 20                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : STRUCTURES WITH THE LOWEST         
REMARK 210                                   ENERGY                             
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK: NULL                                                         
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465   1 GLY A    76                                                      
REMARK 465   1 SER A    77                                                      
REMARK 465   2 GLY A    76                                                      
REMARK 465   2 SER A    77                                                      
REMARK 465   3 GLY A    76                                                      
REMARK 465   3 SER A    77                                                      
REMARK 465   4 GLY A    76                                                      
REMARK 465   4 SER A    77                                                      
REMARK 465   5 GLY A    76                                                      
REMARK 465   5 SER A    77                                                      
REMARK 465   6 GLY A    76                                                      
REMARK 465   6 SER A    77                                                      
REMARK 465   7 GLY A    76                                                      
REMARK 465   7 SER A    77                                                      
REMARK 465   8 GLY A    76                                                      
REMARK 465   8 SER A    77                                                      
REMARK 465   9 GLY A    76                                                      
REMARK 465   9 SER A    77                                                      
REMARK 465  10 GLY A    76                                                      
REMARK 465  10 SER A    77                                                      
REMARK 465  11 GLY A    76                                                      
REMARK 465  11 SER A    77                                                      
REMARK 465  12 GLY A    76                                                      
REMARK 465  12 SER A    77                                                      
REMARK 465  13 GLY A    76                                                      
REMARK 465  13 SER A    77                                                      
REMARK 465  14 GLY A    76                                                      
REMARK 465  14 SER A    77                                                      
REMARK 465  15 GLY A    76                                                      
REMARK 465  15 SER A    77                                                      
REMARK 465  16 GLY A    76                                                      
REMARK 465  16 SER A    77                                                      
REMARK 465  17 GLY A    76                                                      
REMARK 465  17 SER A    77                                                      
REMARK 465  18 GLY A    76                                                      
REMARK 465  18 SER A    77                                                      
REMARK 465  19 GLY A    76                                                      
REMARK 465  19 SER A    77                                                      
REMARK 465  20 GLY A    76                                                      
REMARK 465  20 SER A    77                                                      
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS                                      
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),F6.3)                  
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991                                
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   RES CSSEQI ATM2   DEVIATION                     
REMARK 500  7 GLN A  83   CG    GLN A  83   CD    -0.155                        
REMARK 500  7 GLN A  83   CD    GLN A  83   OE1   -0.208                        
REMARK 500  7 GLN A  83   CD    GLN A  83   NE2   -0.237                        
REMARK 500  7 HIS A  98   CG    HIS A  98   ND1   -0.312                        
REMARK 500  7 HIS A  98   CE1   HIS A  98   NE2   -0.363                        
REMARK 500  7 ASP A 107   CB    ASP A 107   CG    -1.275                        
REMARK 500  7 ASP A 107   CG    ASP A 107   OD1   -1.081                        
REMARK 500  7 ASP A 107   CG    ASP A 107   OD2   -0.958                        
REMARK 500  7 ARG A 112   CG    ARG A 112   CD    -0.243                        
REMARK 500  7 ARG A 112   NE    ARG A 112   CZ    -0.250                        
REMARK 500  7 ARG A 112   CZ    ARG A 112   NH1   -0.345                        
REMARK 500  7 GLU A 116   CD    GLU A 116   OE1   -0.282                        
REMARK 500  7 GLU A 116   CD    GLU A 116   OE2   -0.247                        
REMARK 500  7 CYS A 131   CB    CYS A 131   SG    -0.414                        
REMARK 500  7 MET A 132   SD    MET A 132   CE    -0.157                        
REMARK 500  7 ASN A 140   CG    ASN A 140   OD1   -0.216                        
REMARK 500  7 ASN A 140   CG    ASN A 140   ND2   -0.184                        
REMARK 500  7 MET A 189   SD    MET A 189   CE    -0.311                        
REMARK 500  7 GLN A 209   CD    GLN A 209   OE1   -0.458                        
REMARK 500  7 GLN A 209   CD    GLN A 209   NE2   -0.371                        
REMARK 500  7 ASN A 224   CG    ASN A 224   OD1   -0.551                        
REMARK 500  7 ASN A 224   CG    ASN A 224   ND2   -0.409                        
REMARK 500  7 GLU A 228   CD    GLU A 228   OE1   -0.218                        
REMARK 500  7 GLU A 228   CD    GLU A 228   OE2   -0.194                        
REMARK 500  7 SER A 248   CB    SER A 248   OG    -0.215                        
REMARK 500  7 ASN A 256   CB    ASN A 256   CG    -0.158                        
REMARK 500  7 ASN A 256   CG    ASN A 256   OD1   -0.186                        
REMARK 500  7 ASN A 256   CG    ASN A 256   ND2   -0.166                        
REMARK 500  7 ASP A 259   CG    ASP A 259   OD2   -0.158                        
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES                                       
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)              
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991                                
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   ATM2   ATM3                                     
REMARK 500  7 HIS A  98   CB  -  CG  -  CD2 ANGL. DEV. = 12.0 DEGREES           
REMARK 500  7 HIS A  98   ND1 -  CG  -  CD2 ANGL. DEV. =-18.5 DEGREES           
REMARK 500  7 HIS A  98   CE1 -  NE2 -  CD2 ANGL. DEV. =-15.6 DEGREES           
REMARK 500  7 HIS A  98   CG  -  CD2 -  NE2 ANGL. DEV. = 19.2 DEGREES           
REMARK 500  7 ASP A 107   CA  -  CB  -  CG  ANGL. DEV. = 39.3 DEGREES           
REMARK 500  7 ASP A 107   OD1 -  CG  -  OD2 ANGL. DEV. = 24.3 DEGREES           
REMARK 500  7 ASP A 107   CB  -  CG  -  OD1 ANGL. DEV. =-54.8 DEGREES           
REMARK 500  7 ASP A 107   CB  -  CG  -  OD2 ANGL. DEV. = 30.8 DEGREES           
REMARK 500  7 ARG A 112   NE  -  CZ  -  NH1 ANGL. DEV. =-14.9 DEGREES           
REMARK 500  7 GLU A 116   OE1 -  CD  -  OE2 ANGL. DEV. =-11.4 DEGREES           
REMARK 500  7 GLN A 209   OE1 -  CD  -  NE2 ANGL. DEV. =-34.7 DEGREES           
REMARK 500  7 GLN A 209   CG  -  CD  -  OE1 ANGL. DEV. = 11.4 DEGREES           
REMARK 500  7 GLN A 209   CG  -  CD  -  NE2 ANGL. DEV. = 23.6 DEGREES           
REMARK 500  7 ASN A 224   OD1 -  CG  -  ND2 ANGL. DEV. =-42.5 DEGREES           
REMARK 500  7 ASN A 224   CB  -  CG  -  OD1 ANGL. DEV. = 13.9 DEGREES           
REMARK 500  7 ASN A 224   CB  -  CG  -  ND2 ANGL. DEV. = 28.8 DEGREES           
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 ARG A 137      -47.88     61.37                                   
REMARK 500  1 ALA A 191      -43.65     66.02                                   
REMARK 500  1 GLN A 203      169.74     70.90                                   
REMARK 500  2 SER A 170     -104.09     58.78                                   
REMARK 500  2 ASN A 175      153.45     71.07                                   
REMARK 500  2 ALA A 191      -30.35     67.19                                   
REMARK 500  3 GLU A 109      -67.79     85.14                                   
REMARK 500  3 ALA A 191      -46.83     64.39                                   
REMARK 500  4 LEU A 158      168.96     42.65                                   
REMARK 500  4 ALA A 172      -50.87     61.49                                   
REMARK 500  4 ALA A 257      -55.70     67.11                                   
REMARK 500  5 ALA A 108      127.60     72.64                                   
REMARK 500  5 ALA A 172      -51.05     61.70                                   
REMARK 500  5 ALA A 191      -32.48     65.86                                   
REMARK 500  6 GLN A 164      -34.73     60.77                                   
REMARK 500  6 ALA A 191      -43.46     63.26                                   
REMARK 500  6 ASP A 259      -91.21     33.94                                   
REMARK 500  7 SER A 170     -101.68     56.72                                   
REMARK 500  7 LEU A 177     -106.70   -174.60                                   
REMARK 500  7 ALA A 191      -38.50     66.52                                   
REMARK 500  8 GLU A 109      -98.32    178.21                                   
REMARK 500  8 ALA A 191      -38.53     62.74                                   
REMARK 500  8 ASP A 259      -49.79     62.61                                   
REMARK 500  9 GLN A 164      -38.48     64.84                                   
REMARK 500  9 SER A 170      -49.41     67.19                                   
REMARK 500  9 ALA A 191      -37.15     68.05                                   
REMARK 500 10 ALA A 172      -45.77     62.54                                   
REMARK 500 11 ALA A 108      142.40     78.31                                   
REMARK 500 11 GLU A 109      -95.50    173.70                                   
REMARK 500 11 THR A 174     -133.76    167.69                                   
REMARK 500 12 SER A 170     -111.49     71.27                                   
REMARK 500 12 ALA A 191      -40.47     63.95                                   
REMARK 500 13 SER A 170      -70.05     60.59                                   
REMARK 500 13 ALA A 172      -58.61     61.86                                   
REMARK 500 13 ALA A 258      -44.79     67.64                                   
REMARK 500 14 LEU A 158      157.85     74.92                                   
REMARK 500 14 ALA A 191      -43.06     63.85                                   
REMARK 500 14 ASP A 259      -48.62     63.49                                   
REMARK 500 15 SER A 170     -106.96     66.68                                   
REMARK 500 15 ALA A 191      -45.57     63.87                                   
REMARK 500 15 ASP A 259      -54.18     58.00                                   
REMARK 500 16 GLN A 164      -38.97     66.95                                   
REMARK 500 16 ALA A 191      -37.78     62.97                                   
REMARK 500 16 ALA A 258      -42.68     66.78                                   
REMARK 500 17 ALA A 108      133.80     78.50                                   
REMARK 500 17 LEU A 177      -67.05     66.25                                   
REMARK 500 17 ALA A 191      -44.61     63.51                                   
REMARK 500 18 GLN A 164      -34.68     63.56                                   
REMARK 500 18 ALA A 191      -42.85     64.62                                   
REMARK 500 19 ALA A 191      -40.71     64.14                                   
REMARK 500 19 THR A 255      -44.33     55.03                                   
REMARK 500 19 ALA A 258      -44.88     61.28                                   
REMARK 500 20 ALA A 191      -43.38     61.79                                   
REMARK 500 20 ASP A 259      -56.11     63.97                                   
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: BMRB-5974   RELATED DB: BMRB                             
REMARK 900 ASSIGNMENTS OF THE CATALYTIC DOMAIN OF GUANINE NUCLEOTIDE            
REMARK 900 EXCHANGE FACTOR BOPE FROM BURKHOLDERIA PSEUDOMALLEI                  
REMARK 900 RELATED ID: 1R6E   RELATED DB: PDB                                   
REMARK 900 NMR SOLUTION STRUCTURE OF THE CATALYTIC DOMAIN OF SOPE2              
DBREF  2AIC A   78   261  GB     52212960 CAH38998        78    261             
SEQRES   1 A  186  GLY SER THR GLY ASP ALA LYS GLN ALA ILE ARG HIS PHE          
SEQRES   2 A  186  VAL ASP GLU ALA VAL LYS GLN VAL ALA HIS ALA ARG THR          
SEQRES   3 A  186  PRO GLU ILE ARG GLN ASP ALA GLU PHE GLY ARG GLN VAL          
SEQRES   4 A  186  TYR GLU ALA THR LEU CYS ALA ILE PHE SER GLU ALA LYS          
SEQRES   5 A  186  ASP ARG PHE CYS MET ASP PRO ALA THR ARG ALA GLY ASN          
SEQRES   6 A  186  VAL ARG PRO ALA PHE ILE GLU ALA LEU GLY ASP ALA ALA          
SEQRES   7 A  186  ARG ALA THR GLY LEU PRO GLY ALA ASP LYS GLN GLY VAL          
SEQRES   8 A  186  PHE THR PRO SER GLY ALA GLY THR ASN PRO LEU TYR THR          
SEQRES   9 A  186  GLU ILE ARG LEU ARG ALA ASP THR LEU MET GLY ALA GLU          
SEQRES  10 A  186  LEU ALA ALA ARG PRO GLU TYR ARG GLU LEU GLN PRO TYR          
SEQRES  11 A  186  ALA ARG GLN GLN ALA ILE ASP LEU VAL ALA ASN ALA LEU          
SEQRES  12 A  186  PRO ALA GLU ARG SER ASN THR LEU VAL GLU PHE ARG GLN          
SEQRES  13 A  186  THR VAL GLN THR LEU GLU ALA THR TYR ARG ARG ALA ALA          
SEQRES  14 A  186  GLN ASP ALA SER ARG ASP GLU LYS GLY ALA THR ASN ALA          
SEQRES  15 A  186  ALA ASP GLY ALA                                              
HELIX    1   1 ASP A   80  ARG A  100  1                                  21    
HELIX    2   2 GLU A  103  ALA A  108  1                                   6    
HELIX    3   3 GLU A  109  ASP A  133  1                                  25    
HELIX    4   4 VAL A  141  GLY A  157  1                                  17    
HELIX    5   5 LEU A  177  MET A  189  1                                  13    
HELIX    6   6 ALA A  191  ARG A  196  1                                   6    
HELIX    7   7 TYR A  199  GLN A  203  5                                   5    
HELIX    8   8 TYR A  205  LEU A  218  1                                  14    
HELIX    9   9 ALA A  220  LYS A  252  1                                  33    
SHEET    1   A 2 ALA A 161  LYS A 163  0                                        
SHEET    2   A 2 VAL A 166  THR A 168 -1  O  VAL A 166   N  LYS A 163           
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000                         
MODEL        1