HEADER TRANSFERASE (PHOSPHOTRANSFERASE) 07-MAR-95 2AK3 TITLE THE THREE-DIMENSIONAL STRUCTURE OF THE COMPLEX BETWEEN MITOCHONDRIAL TITLE 2 MATRIX ADENYLATE KINASE AND ITS SUBSTRATE AMP AT 1.85 ANGSTROMS TITLE 3 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENYLATE KINASE ISOENZYME-3; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.4.10; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: CATTLE; SOURCE 4 ORGANISM_TAXID: 9913 KEYWDS TRANSFERASE (PHOSPHOTRANSFERASE) EXPDTA X-RAY DIFFRACTION AUTHOR K.DIEDERICHS,G.E.SCHULZ REVDAT 4 14-FEB-24 2AK3 1 REMARK REVDAT 3 24-FEB-09 2AK3 1 VERSN REVDAT 2 01-APR-03 2AK3 1 JRNL REVDAT 1 08-MAY-95 2AK3 0 SPRSDE 08-MAY-95 2AK3 1AK3 JRNL AUTH K.DIEDERICHS,G.E.SCHULZ JRNL TITL THE REFINED STRUCTURE OF THE COMPLEX BETWEEN ADENYLATE JRNL TITL 2 KINASE FROM BEEF HEART MITOCHONDRIAL MATRIX AND ITS JRNL TITL 3 SUBSTRATE AMP AT 1.85 A RESOLUTION. JRNL REF J.MOL.BIOL. V. 217 541 1991 JRNL REFN ISSN 0022-2836 JRNL PMID 1994037 JRNL DOI 10.1016/0022-2836(91)90756-V REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH K.DIEDERICHS,G.E.SCHULZ REMARK 1 TITL THE THREE-DIMENSIONAL STRUCTURE OF THE COMPLEX BETWEEN REMARK 1 TITL 2 MITOCHONDRIAL MATRIX ADENYLATE KINASE AND ITS SUBSTRATE AMP REMARK 1 REF BIOCHEMISTRY V. 29 8138 1990 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 2 REMARK 1 AUTH G.E.SCHULZ,C.W.MULLER,K.DIEDERICHS REMARK 1 TITL INDUCED-FIT MOVEMENTS IN ADENYLATE KINASE REMARK 1 REF J.MOL.BIOL. V. 213 627 1990 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 3 REMARK 1 AUTH M.YAMADA,M.SHAHJAHAN,T.TANABE,F.KISHI,A.NAKAZAWA REMARK 1 TITL CLONING AND CHARACTERIZATION OF CDNA FOR MITOCHONDRIAL REMARK 1 TITL 2 GTP:AMP PHOSPHOTRANSFERASE OF BOVINE LIVER REMARK 1 REF J.BIOL.CHEM. V. 264 19192 1989 REMARK 1 REFN ISSN 0021-9258 REMARK 1 REFERENCE 4 REMARK 1 AUTH A.G.TOMASSELLI,R.FRANK,E.SCHILTZ REMARK 1 TITL THE COMPLETE PRIMARY STRUCTURE OF GTP:AMP PHOSPHOTRANSFERASE REMARK 1 TITL 2 FROM BEEF HEART MITOCHONDRIA REMARK 1 REF FEBS LETT. V. 202 303 1986 REMARK 1 REFN ISSN 0014-5793 REMARK 1 REFERENCE 5 REMARK 1 AUTH B.WIELAND,A.G.TOMASSELLI,L.H.NODA,R.FRANK,G.E.SCHULZ REMARK 1 TITL THE AMINO ACID SEQUENCE OF GTP:AMP PHOSPHOTRANSFERASE FROM REMARK 1 TITL 2 BEEF-HEART MITOCHONDRIA: EXTENSIVE HOMOLOGY WITH CYTOSOLIC REMARK 1 TITL 3 ADENYLATE KINASE REMARK 1 REF EUR.J.BIOCHEM. V. 143 331 1984 REMARK 1 REFN ISSN 0014-2956 REMARK 1 REFERENCE 6 REMARK 1 AUTH A.G.TOMASSELLI,R.H.SCHIRMER,L.H.NODA REMARK 1 TITL MITOCHONDRIAL GTP-AMP PHOSPHOTRANSFERASE: 1. PURIFICATION REMARK 1 TITL 2 AND PROPERTIES REMARK 1 REF EUR.J.BIOCHEM. V. 93 257 1979 REMARK 1 REFN ISSN 0014-2956 REMARK 1 REFERENCE 7 REMARK 1 AUTH A.G.TOMASSELLI,L.H.NODA REMARK 1 TITL MITOCHONDRIAL GTP-AMP PHOSPHOTRANSFERASE: 2. KINETIC AND REMARK 1 TITL 2 EQUILIBRIUM DIALYSIS STUDIES REMARK 1 REF EUR.J.BIOCHEM. V. 93 263 1979 REMARK 1 REFN ISSN 0014-2956 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 94.4 REMARK 3 NUMBER OF REFLECTIONS : 42519 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3560 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 381 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.016 REMARK 3 BOND ANGLES (DEGREES) : 3.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2AK3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000177758. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42879 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.91500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.70500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.49500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 77.70500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.91500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.49500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: MTRIX REMARK 300 THE TRANSFORMATIONS PRESENTED ON MTRIX RECORDS BELOW REMARK 300 DESCRIBE NON-CRYSTALLOGRAPHIC RELATIONSHIPS AMONG THE REMARK 300 VARIOUS DOMAINS IN THIS ENTRY. APPLYING THE APPROPRIATE REMARK 300 MTRIX TRANSFORMATION TO THE RESIDUES LISTED FIRST WILL REMARK 300 YIELD APPROXIMATE COORDINATES FOR THE RESIDUES LISTED REMARK 300 SECOND. REMARK 300 REMARK 300 APPLIED TO TRANSFORMED TO REMARK 300 MTRIX CHAIN RESIDUES CHAIN RESIDUES RMSD REMARK 300 M1 A 0 - A 219 B 0 - B 219 1.508 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR B 221 REMARK 465 SER B 222 REMARK 465 VAL B 223 REMARK 465 THR B 224 REMARK 465 PRO B 225 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 220 CA C O CB CG CD OE1 REMARK 470 GLU B 220 OE2 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 GLU B 220 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN B 219 C O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 28 NE2 HIS A 28 CD2 -0.073 REMARK 500 HIS A 33 NE2 HIS A 33 CD2 -0.074 REMARK 500 HIS A 75 NE2 HIS A 75 CD2 -0.067 REMARK 500 HIS A 129 NE2 HIS A 129 CD2 -0.071 REMARK 500 HIS A 205 NE2 HIS A 205 CD2 -0.076 REMARK 500 HIS B 28 NE2 HIS B 28 CD2 -0.073 REMARK 500 HIS B 33 NE2 HIS B 33 CD2 -0.070 REMARK 500 HIS B 75 NE2 HIS B 75 CD2 -0.072 REMARK 500 HIS B 129 NE2 HIS B 129 CD2 -0.073 REMARK 500 HIS B 205 NE2 HIS B 205 CD2 -0.075 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 31 CA - CB - CG ANGL. DEV. = 14.8 DEGREES REMARK 500 ARG A 71 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 TRP A 85 CD1 - CG - CD2 ANGL. DEV. = 7.0 DEGREES REMARK 500 TRP A 85 CE2 - CD2 - CG ANGL. DEV. = -5.7 DEGREES REMARK 500 ARG A 92 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 92 NE - CZ - NH2 ANGL. DEV. = -5.1 DEGREES REMARK 500 TRP A 127 CD1 - CG - CD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 TRP A 127 CE2 - CD2 - CG ANGL. DEV. = -5.4 DEGREES REMARK 500 ARG A 170 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 170 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 186 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 186 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 TRP A 203 CD1 - CG - CD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 TRP A 203 CE2 - CD2 - CG ANGL. DEV. = -5.7 DEGREES REMARK 500 SER A 218 CA - C - N ANGL. DEV. = -16.9 DEGREES REMARK 500 SER A 222 CA - C - N ANGL. DEV. = -14.9 DEGREES REMARK 500 VAL A 223 N - CA - C ANGL. DEV. = -19.7 DEGREES REMARK 500 VAL A 223 CA - C - N ANGL. DEV. = -13.9 DEGREES REMARK 500 ALA B 1 N - CA - C ANGL. DEV. = 19.2 DEGREES REMARK 500 ARG B 24 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 LEU B 31 CA - CB - CG ANGL. DEV. = 16.1 DEGREES REMARK 500 ARG B 46 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 TRP B 85 CD1 - CG - CD2 ANGL. DEV. = 8.1 DEGREES REMARK 500 TRP B 85 CG - CD1 - NE1 ANGL. DEV. = -6.9 DEGREES REMARK 500 TRP B 85 CE2 - CD2 - CG ANGL. DEV. = -6.2 DEGREES REMARK 500 ARG B 92 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG B 92 NE - CZ - NH2 ANGL. DEV. = -5.1 DEGREES REMARK 500 ARG B 102 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG B 126 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG B 126 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 TRP B 127 CD1 - CG - CD2 ANGL. DEV. = 7.0 DEGREES REMARK 500 TRP B 127 CE2 - CD2 - CG ANGL. DEV. = -6.1 DEGREES REMARK 500 TRP B 127 CG - CD2 - CE3 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG B 159 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG B 163 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG B 170 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG B 170 NE - CZ - NH2 ANGL. DEV. = -5.1 DEGREES REMARK 500 TYR B 174 CB - CG - CD1 ANGL. DEV. = -3.9 DEGREES REMARK 500 TRP B 203 CD1 - CG - CD2 ANGL. DEV. = 5.1 DEGREES REMARK 500 TRP B 203 CB - CG - CD1 ANGL. DEV. = -8.0 DEGREES REMARK 500 TRP B 203 CE2 - CD2 - CG ANGL. DEV. = -5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 1 86.20 -69.34 REMARK 500 SER A 2 -79.41 -55.96 REMARK 500 SER A 218 103.02 -56.71 REMARK 500 GLN A 219 25.85 45.93 REMARK 500 SER A 222 75.84 -103.43 REMARK 500 VAL A 223 95.01 170.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 224 PRO A 225 122.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 VAL A 223 13.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 227 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 227 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP A 226 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP B 226 DBREF 2AK3 A 0 225 UNP P08760 KAD3_BOVIN 1 226 DBREF 2AK3 B 0 225 UNP P08760 KAD3_BOVIN 1 226 SEQRES 1 A 226 GLY ALA SER ALA ARG LEU LEU ARG ALA ALA ILE MET GLY SEQRES 2 A 226 ALA PRO GLY SER GLY LYS GLY THR VAL SER SER ARG ILE SEQRES 3 A 226 THR LYS HIS PHE GLU LEU LYS HIS LEU SER SER GLY ASP SEQRES 4 A 226 LEU LEU ARG ASP ASN MET LEU ARG GLY THR GLU ILE GLY SEQRES 5 A 226 VAL LEU ALA LYS THR PHE ILE ASP GLN GLY LYS LEU ILE SEQRES 6 A 226 PRO ASP ASP VAL MET THR ARG LEU VAL LEU HIS GLU LEU SEQRES 7 A 226 LYS ASN LEU THR GLN TYR ASN TRP LEU LEU ASP GLY PHE SEQRES 8 A 226 PRO ARG THR LEU PRO GLN ALA GLU ALA LEU ASP ARG ALA SEQRES 9 A 226 TYR GLN ILE ASP THR VAL ILE ASN LEU ASN VAL PRO PHE SEQRES 10 A 226 GLU VAL ILE LYS GLN ARG LEU THR ALA ARG TRP ILE HIS SEQRES 11 A 226 PRO GLY SER GLY ARG VAL TYR ASN ILE GLU PHE ASN PRO SEQRES 12 A 226 PRO LYS THR MET GLY ILE ASP ASP LEU THR GLY GLU PRO SEQRES 13 A 226 LEU VAL GLN ARG GLU ASP ASP ARG PRO GLU THR VAL VAL SEQRES 14 A 226 LYS ARG LEU LYS ALA TYR GLU ALA GLN THR GLU PRO VAL SEQRES 15 A 226 LEU GLU TYR TYR ARG LYS LYS GLY VAL LEU GLU THR PHE SEQRES 16 A 226 SER GLY THR GLU THR ASN LYS ILE TRP PRO HIS VAL TYR SEQRES 17 A 226 ALA PHE LEU GLN THR LYS LEU PRO GLN ARG SER GLN GLU SEQRES 18 A 226 THR SER VAL THR PRO SEQRES 1 B 226 GLY ALA SER ALA ARG LEU LEU ARG ALA ALA ILE MET GLY SEQRES 2 B 226 ALA PRO GLY SER GLY LYS GLY THR VAL SER SER ARG ILE SEQRES 3 B 226 THR LYS HIS PHE GLU LEU LYS HIS LEU SER SER GLY ASP SEQRES 4 B 226 LEU LEU ARG ASP ASN MET LEU ARG GLY THR GLU ILE GLY SEQRES 5 B 226 VAL LEU ALA LYS THR PHE ILE ASP GLN GLY LYS LEU ILE SEQRES 6 B 226 PRO ASP ASP VAL MET THR ARG LEU VAL LEU HIS GLU LEU SEQRES 7 B 226 LYS ASN LEU THR GLN TYR ASN TRP LEU LEU ASP GLY PHE SEQRES 8 B 226 PRO ARG THR LEU PRO GLN ALA GLU ALA LEU ASP ARG ALA SEQRES 9 B 226 TYR GLN ILE ASP THR VAL ILE ASN LEU ASN VAL PRO PHE SEQRES 10 B 226 GLU VAL ILE LYS GLN ARG LEU THR ALA ARG TRP ILE HIS SEQRES 11 B 226 PRO GLY SER GLY ARG VAL TYR ASN ILE GLU PHE ASN PRO SEQRES 12 B 226 PRO LYS THR MET GLY ILE ASP ASP LEU THR GLY GLU PRO SEQRES 13 B 226 LEU VAL GLN ARG GLU ASP ASP ARG PRO GLU THR VAL VAL SEQRES 14 B 226 LYS ARG LEU LYS ALA TYR GLU ALA GLN THR GLU PRO VAL SEQRES 15 B 226 LEU GLU TYR TYR ARG LYS LYS GLY VAL LEU GLU THR PHE SEQRES 16 B 226 SER GLY THR GLU THR ASN LYS ILE TRP PRO HIS VAL TYR SEQRES 17 B 226 ALA PHE LEU GLN THR LYS LEU PRO GLN ARG SER GLN GLU SEQRES 18 B 226 THR SER VAL THR PRO HET SO4 A 227 5 HET AMP A 226 23 HET SO4 B 227 5 HET AMP B 226 23 HETNAM SO4 SULFATE ION HETNAM AMP ADENOSINE MONOPHOSPHATE FORMUL 3 SO4 2(O4 S 2-) FORMUL 4 AMP 2(C10 H14 N5 O7 P) FORMUL 7 HOH *381(H2 O) HELIX 1 H1A GLY A 17 PHE A 29 1 13 HELIX 2 H2A SER A 36 ARG A 46 1 11 HELIX 3 H3A THR A 48 ASP A 59 1 12 HELIX 4 H4A PRO A 65 LYS A 78 1 14 HELIX 5 H5A THR A 93 ASP A 101 1 9 HELIX 6 H6A PRO A 115 LEU A 123 1 9 HELIX 7 H7A ARG A 163 GLU A 179 1 17 HELIX 8 H8A VAL A 181 LYS A 188 1 8 HELIX 9 H9A ILE A 202 GLN A 211 1 10 HELIX 10 H1B GLY B 17 PHE B 29 1 13 HELIX 11 H2B SER B 36 ARG B 46 1 11 HELIX 12 H3B THR B 48 ASP B 59 1 12 HELIX 13 H4B PRO B 65 LYS B 78 1 14 HELIX 14 H5B THR B 93 ASP B 101 1 9 HELIX 15 H6B PRO B 115 LEU B 123 1 9 HELIX 16 H7B ARG B 163 GLU B 179 1 17 HELIX 17 H8B VAL B 181 LYS B 188 1 8 HELIX 18 H9B ILE B 202 GLN B 211 1 10 SHEET 1 B1A 5 LYS A 32 SER A 36 0 SHEET 2 B1A 5 ASN A 84 ASP A 88 1 O ASN A 84 N LYS A 32 SHEET 3 B1A 5 LEU A 6 MET A 11 1 O LEU A 6 N TRP A 85 SHEET 4 B1A 5 THR A 108 ASN A 113 1 O ILE A 110 N MET A 11 SHEET 5 B1A 5 VAL A 190 GLY A 196 1 O VAL A 190 N VAL A 109 SHEET 1 B2A 4 ARG A 134 ILE A 138 0 SHEET 2 B2A 4 ALA A 125 HIS A 129 -1 O ALA A 125 N ILE A 138 SHEET 3 B2A 4 GLU A 154 VAL A 157 -1 O VAL A 157 N ILE A 128 SHEET 4 B2A 4 GLY A 147 ASP A 149 -1 O GLY A 147 N LEU A 156 SHEET 1 B1B 5 LYS B 32 SER B 36 0 SHEET 2 B1B 5 ASN B 84 ASP B 88 1 O ASN B 84 N LYS B 32 SHEET 3 B1B 5 LEU B 6 MET B 11 1 O LEU B 6 N TRP B 85 SHEET 4 B1B 5 THR B 108 ASN B 113 1 O ILE B 110 N MET B 11 SHEET 5 B1B 5 VAL B 190 GLY B 196 1 O VAL B 190 N VAL B 109 SHEET 1 B2B 4 ARG B 134 ILE B 138 0 SHEET 2 B2B 4 ALA B 125 HIS B 129 -1 O ALA B 125 N ILE B 138 SHEET 3 B2B 4 GLU B 154 VAL B 157 -1 O VAL B 157 N ILE B 128 SHEET 4 B2B 4 GLY B 147 ASP B 149 -1 O GLY B 147 N LEU B 156 CISPEP 1 PHE A 90 PRO A 91 0 -9.70 CISPEP 2 PHE B 90 PRO B 91 0 -2.56 SITE 1 AC1 7 ALA A 13 GLY A 15 SER A 16 GLY A 17 SITE 2 AC1 7 LYS A 18 GLY A 19 HOH A 324 SITE 1 AC2 8 GLY B 15 SER B 16 GLY B 17 LYS B 18 SITE 2 AC2 8 GLY B 19 HOH B 332 HOH B 392 HOH B 395 SITE 1 AC3 14 SER A 36 LEU A 40 ARG A 41 ILE A 58 SITE 2 AC3 14 LYS A 62 LEU A 63 ILE A 64 MET A 69 SITE 3 AC3 14 GLY A 89 ARG A 92 GLN A 96 HOH A 338 SITE 4 AC3 14 HOH A 374 HOH A 409 SITE 1 AC4 15 SER B 36 GLY B 37 LEU B 40 ARG B 41 SITE 2 AC4 15 ILE B 58 LYS B 62 LEU B 63 ILE B 64 SITE 3 AC4 15 MET B 69 GLY B 89 ARG B 92 GLN B 96 SITE 4 AC4 15 HOH B 293 HOH B 328 HOH B 330 CRYST1 49.830 66.990 155.410 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020068 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014928 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006435 0.00000 MTRIX1 1 0.985000 0.031000 0.171000 27.25000 1 MTRIX2 1 -0.002000 0.985000 -0.171000 10.96000 1 MTRIX3 1 -0.174000 0.168000 0.970000 -45.00000 1