data_2AKG # _entry.id 2AKG # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2AKG pdb_00002akg 10.2210/pdb2akg/pdb RCSB RCSB033999 ? ? WWPDB D_1000033999 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-11-08 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 5 'Structure model' 1 4 2024-05-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_struct_assembly 3 4 'Structure model' pdbx_struct_oper_list 4 5 'Structure model' chem_comp_atom 5 5 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2AKG _pdbx_database_status.recvd_initial_deposition_date 2005-08-03 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Gill, M.L.' 1 'Strobel, S.A.' 2 'Loria, J.P.' 3 # _citation.id primary _citation.title '(205)Tl NMR methods for the characterization of monovalent cation binding to nucleic acids' _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_volume 127 _citation.page_first 16723 _citation.page_last 16732 _citation.year 2005 _citation.journal_id_ASTM JACSAT _citation.country US _citation.journal_id_ISSN 0002-7863 _citation.journal_id_CSD 0004 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16305263 _citation.pdbx_database_id_DOI 10.1021/ja055358f # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Gill, M.L.' 1 ? primary 'Strobel, S.A.' 2 ? primary 'Loria, J.P.' 3 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description "5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3'" _entity.formula_weight 3805.460 _entity.pdbx_number_of_molecules 2 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DG)(DG)(DG)(DG)(DT)(DT)(DT)(DT)(DG)(DG)(DG)(DG)' _entity_poly.pdbx_seq_one_letter_code_can GGGGTTTTGGGG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DG n 1 3 DG n 1 4 DG n 1 5 DT n 1 6 DT n 1 7 DT n 1 8 DT n 1 9 DG n 1 10 DG n 1 11 DG n 1 12 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'Sequence obtained from Sterkiella nova (Oxytricha nova) telomere' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG G A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DG 3 3 3 DG G A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DT 5 5 5 DT T A . n A 1 6 DT 6 6 6 DT T A . n A 1 7 DT 7 7 7 DT T A . n A 1 8 DT 8 8 8 DT T A . n A 1 9 DG 9 9 9 DG G A . n A 1 10 DG 10 10 10 DG G A . n A 1 11 DG 11 11 11 DG G A . n A 1 12 DG 12 12 12 DG G A . n B 1 1 DG 1 13 13 DG G B . n B 1 2 DG 2 14 14 DG G B . n B 1 3 DG 3 15 15 DG G B . n B 1 4 DG 4 16 16 DG G B . n B 1 5 DT 5 17 17 DT T B . n B 1 6 DT 6 18 18 DT T B . n B 1 7 DT 7 19 19 DT T B . n B 1 8 DT 8 20 20 DT T B . n B 1 9 DG 9 21 21 DG G B . n B 1 10 DG 10 22 22 DG G B . n B 1 11 DG 11 23 23 DG G B . n B 1 12 DG 12 24 24 DG G B . n # _exptl.entry_id 2AKG _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol ? _exptl_crystal.density_Matthews ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _database_PDB_matrix.entry_id 2AKG _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 2AKG _struct.title 'Thallium form of the G-Quadruplex from Oxytricha Nova, d(G4T4G4)2' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2AKG _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'Deoxyribonucleic acid, G-Quadruplex, Thallium, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 2AKG _struct_ref.pdbx_db_accession 2AKG _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2AKG A 1 ? 12 ? 2AKG 1 ? 12 ? 1 12 2 1 2AKG B 1 ? 12 ? 2AKG 13 ? 24 ? 13 24 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DG 1 N7 ? ? ? 1_555 B DG 4 N2 ? ? A DG 1 B DG 16 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog2 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DG 4 N1 ? ? A DG 1 B DG 16 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog3 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DG 9 O6 ? ? A DG 1 B DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog4 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DG 9 N7 ? ? A DG 1 B DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog5 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DG 3 O6 ? ? A DG 2 B DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog6 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DG 3 N7 ? ? A DG 2 B DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog7 hydrog ? ? A DG 2 N7 ? ? ? 1_555 B DG 10 N2 ? ? A DG 2 B DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog8 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DG 10 N1 ? ? A DG 2 B DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog9 hydrog ? ? A DG 3 N7 ? ? ? 1_555 B DG 2 N2 ? ? A DG 3 B DG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog10 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DG 2 N1 ? ? A DG 3 B DG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog11 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DG 11 O6 ? ? A DG 3 B DG 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog12 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DG 11 N7 ? ? A DG 3 B DG 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog13 hydrog ? ? A DG 4 N1 ? ? ? 1_555 A DT 7 O4 ? ? A DG 4 A DT 7 1_555 ? ? ? ? ? ? 'DG-DT MISPAIR' ? ? ? hydrog14 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DG 1 O6 ? ? A DG 4 B DG 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog15 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DG 1 N7 ? ? A DG 4 B DG 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog16 hydrog ? ? A DG 4 N7 ? ? ? 1_555 B DG 12 N2 ? ? A DG 4 B DG 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog17 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DG 12 N1 ? ? A DG 4 B DG 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog18 hydrog ? ? A DG 9 N7 ? ? ? 1_555 B DG 1 N2 ? ? A DG 9 B DG 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog19 hydrog ? ? A DG 9 O6 ? ? ? 1_555 B DG 1 N1 ? ? A DG 9 B DG 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog20 hydrog ? ? A DG 9 N1 ? ? ? 1_555 B DG 12 O6 ? ? A DG 9 B DG 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog21 hydrog ? ? A DG 9 N2 ? ? ? 1_555 B DG 12 N7 ? ? A DG 9 B DG 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog22 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DG 2 O6 ? ? A DG 10 B DG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog23 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DG 2 N7 ? ? A DG 10 B DG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog24 hydrog ? ? A DG 10 N7 ? ? ? 1_555 B DG 11 N2 ? ? A DG 10 B DG 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog25 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DG 11 N1 ? ? A DG 10 B DG 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog26 hydrog ? ? A DG 11 N7 ? ? ? 1_555 B DG 3 N2 ? ? A DG 11 B DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog27 hydrog ? ? A DG 11 O6 ? ? ? 1_555 B DG 3 N1 ? ? A DG 11 B DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog28 hydrog ? ? A DG 11 N1 ? ? ? 1_555 B DG 10 O6 ? ? A DG 11 B DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog29 hydrog ? ? A DG 11 N2 ? ? ? 1_555 B DG 10 N7 ? ? A DG 11 B DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog30 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DG 4 O6 ? ? A DG 12 B DG 16 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog31 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DG 4 N7 ? ? A DG 12 B DG 16 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog32 hydrog ? ? A DG 12 N7 ? ? ? 1_555 B DG 9 N2 ? ? A DG 12 B DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog33 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DG 9 N1 ? ? A DG 12 B DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog34 hydrog ? ? B DG 4 N1 ? ? ? 1_555 B DT 7 O4 ? ? B DG 16 B DT 19 1_555 ? ? ? ? ? ? 'DG-DT MISPAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 8 "H2''" A DG 3 ? ? "O5'" A DG 4 ? ? 1.56 2 8 "H2''" B DG 15 ? ? "O5'" B DG 16 ? ? 1.60 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 P A DG 3 ? ? OP1 A DG 3 ? ? 1.352 1.485 -0.133 0.017 N 2 1 P A DG 3 ? ? OP2 A DG 3 ? ? 1.356 1.485 -0.129 0.017 N 3 1 P A DT 5 ? ? OP1 A DT 5 ? ? 1.355 1.485 -0.130 0.017 N 4 1 P A DT 5 ? ? OP2 A DT 5 ? ? 1.352 1.485 -0.133 0.017 N 5 1 P A DG 10 ? ? OP1 A DG 10 ? ? 1.356 1.485 -0.129 0.017 N 6 1 P A DG 10 ? ? OP2 A DG 10 ? ? 1.352 1.485 -0.133 0.017 N 7 1 P A DG 12 ? ? OP1 A DG 12 ? ? 1.355 1.485 -0.130 0.017 N 8 1 P A DG 12 ? ? OP2 A DG 12 ? ? 1.352 1.485 -0.133 0.017 N 9 1 P B DG 15 ? ? OP1 B DG 15 ? ? 1.355 1.485 -0.130 0.017 N 10 1 P B DG 15 ? ? OP2 B DG 15 ? ? 1.352 1.485 -0.133 0.017 N 11 1 P B DT 17 ? ? OP1 B DT 17 ? ? 1.351 1.485 -0.134 0.017 N 12 1 P B DT 17 ? ? OP2 B DT 17 ? ? 1.355 1.485 -0.130 0.017 N 13 1 P B DG 22 ? ? OP1 B DG 22 ? ? 1.351 1.485 -0.134 0.017 N 14 1 P B DG 22 ? ? OP2 B DG 22 ? ? 1.355 1.485 -0.130 0.017 N 15 1 P B DG 24 ? ? OP1 B DG 24 ? ? 1.352 1.485 -0.133 0.017 N 16 1 P B DG 24 ? ? OP2 B DG 24 ? ? 1.356 1.485 -0.129 0.017 N 17 2 P A DG 3 ? ? OP1 A DG 3 ? ? 1.351 1.485 -0.134 0.017 N 18 2 P A DG 3 ? ? OP2 A DG 3 ? ? 1.356 1.485 -0.129 0.017 N 19 2 P A DT 5 ? ? OP1 A DT 5 ? ? 1.356 1.485 -0.129 0.017 N 20 2 P A DT 5 ? ? OP2 A DT 5 ? ? 1.351 1.485 -0.134 0.017 N 21 2 P A DG 10 ? ? OP1 A DG 10 ? ? 1.356 1.485 -0.129 0.017 N 22 2 P A DG 10 ? ? OP2 A DG 10 ? ? 1.353 1.485 -0.132 0.017 N 23 2 P A DG 12 ? ? OP1 A DG 12 ? ? 1.356 1.485 -0.129 0.017 N 24 2 P A DG 12 ? ? OP2 A DG 12 ? ? 1.352 1.485 -0.133 0.017 N 25 2 P B DG 15 ? ? OP1 B DG 15 ? ? 1.356 1.485 -0.129 0.017 N 26 2 P B DG 15 ? ? OP2 B DG 15 ? ? 1.351 1.485 -0.134 0.017 N 27 2 P B DT 17 ? ? OP1 B DT 17 ? ? 1.351 1.485 -0.134 0.017 N 28 2 P B DT 17 ? ? OP2 B DT 17 ? ? 1.356 1.485 -0.129 0.017 N 29 2 P B DG 22 ? ? OP1 B DG 22 ? ? 1.352 1.485 -0.133 0.017 N 30 2 P B DG 22 ? ? OP2 B DG 22 ? ? 1.357 1.485 -0.128 0.017 N 31 2 P B DG 24 ? ? OP1 B DG 24 ? ? 1.352 1.485 -0.133 0.017 N 32 2 P B DG 24 ? ? OP2 B DG 24 ? ? 1.356 1.485 -0.129 0.017 N 33 3 P A DG 3 ? ? OP1 A DG 3 ? ? 1.352 1.485 -0.133 0.017 N 34 3 P A DG 3 ? ? OP2 A DG 3 ? ? 1.355 1.485 -0.130 0.017 N 35 3 P A DT 5 ? ? OP1 A DT 5 ? ? 1.355 1.485 -0.130 0.017 N 36 3 P A DT 5 ? ? OP2 A DT 5 ? ? 1.352 1.485 -0.133 0.017 N 37 3 P A DG 10 ? ? OP1 A DG 10 ? ? 1.356 1.485 -0.129 0.017 N 38 3 P A DG 10 ? ? OP2 A DG 10 ? ? 1.353 1.485 -0.132 0.017 N 39 3 P A DG 12 ? ? OP1 A DG 12 ? ? 1.357 1.485 -0.128 0.017 N 40 3 P A DG 12 ? ? OP2 A DG 12 ? ? 1.352 1.485 -0.133 0.017 N 41 3 P B DG 15 ? ? OP1 B DG 15 ? ? 1.356 1.485 -0.129 0.017 N 42 3 P B DG 15 ? ? OP2 B DG 15 ? ? 1.352 1.485 -0.133 0.017 N 43 3 P B DT 17 ? ? OP1 B DT 17 ? ? 1.352 1.485 -0.133 0.017 N 44 3 P B DT 17 ? ? OP2 B DT 17 ? ? 1.354 1.485 -0.131 0.017 N 45 3 P B DG 22 ? ? OP1 B DG 22 ? ? 1.352 1.485 -0.133 0.017 N 46 3 P B DG 22 ? ? OP2 B DG 22 ? ? 1.357 1.485 -0.128 0.017 N 47 3 P B DG 24 ? ? OP1 B DG 24 ? ? 1.351 1.485 -0.134 0.017 N 48 3 P B DG 24 ? ? OP2 B DG 24 ? ? 1.357 1.485 -0.128 0.017 N 49 4 P A DG 3 ? ? OP1 A DG 3 ? ? 1.352 1.485 -0.133 0.017 N 50 4 P A DG 3 ? ? OP2 A DG 3 ? ? 1.356 1.485 -0.129 0.017 N 51 4 P A DT 5 ? ? OP1 A DT 5 ? ? 1.355 1.485 -0.130 0.017 N 52 4 P A DT 5 ? ? OP2 A DT 5 ? ? 1.352 1.485 -0.133 0.017 N 53 4 P A DG 10 ? ? OP1 A DG 10 ? ? 1.355 1.485 -0.130 0.017 N 54 4 P A DG 10 ? ? OP2 A DG 10 ? ? 1.352 1.485 -0.133 0.017 N 55 4 P A DG 12 ? ? OP1 A DG 12 ? ? 1.356 1.485 -0.129 0.017 N 56 4 P A DG 12 ? ? OP2 A DG 12 ? ? 1.352 1.485 -0.133 0.017 N 57 4 P B DG 15 ? ? OP1 B DG 15 ? ? 1.356 1.485 -0.129 0.017 N 58 4 P B DG 15 ? ? OP2 B DG 15 ? ? 1.352 1.485 -0.133 0.017 N 59 4 P B DT 17 ? ? OP1 B DT 17 ? ? 1.351 1.485 -0.134 0.017 N 60 4 P B DT 17 ? ? OP2 B DT 17 ? ? 1.355 1.485 -0.130 0.017 N 61 4 P B DG 22 ? ? OP1 B DG 22 ? ? 1.352 1.485 -0.133 0.017 N 62 4 P B DG 22 ? ? OP2 B DG 22 ? ? 1.355 1.485 -0.130 0.017 N 63 4 P B DG 24 ? ? OP1 B DG 24 ? ? 1.352 1.485 -0.133 0.017 N 64 4 P B DG 24 ? ? OP2 B DG 24 ? ? 1.356 1.485 -0.129 0.017 N 65 5 P A DG 3 ? ? OP1 A DG 3 ? ? 1.352 1.485 -0.133 0.017 N 66 5 P A DG 3 ? ? OP2 A DG 3 ? ? 1.355 1.485 -0.130 0.017 N 67 5 P A DT 5 ? ? OP1 A DT 5 ? ? 1.356 1.485 -0.129 0.017 N 68 5 P A DT 5 ? ? OP2 A DT 5 ? ? 1.351 1.485 -0.134 0.017 N 69 5 P A DG 10 ? ? OP1 A DG 10 ? ? 1.355 1.485 -0.130 0.017 N 70 5 P A DG 10 ? ? OP2 A DG 10 ? ? 1.352 1.485 -0.133 0.017 N 71 5 P A DG 12 ? ? OP1 A DG 12 ? ? 1.357 1.485 -0.128 0.017 N 72 5 P A DG 12 ? ? OP2 A DG 12 ? ? 1.352 1.485 -0.133 0.017 N 73 5 P B DG 15 ? ? OP1 B DG 15 ? ? 1.356 1.485 -0.129 0.017 N 74 5 P B DG 15 ? ? OP2 B DG 15 ? ? 1.352 1.485 -0.133 0.017 N 75 5 P B DT 17 ? ? OP1 B DT 17 ? ? 1.351 1.485 -0.134 0.017 N 76 5 P B DT 17 ? ? OP2 B DT 17 ? ? 1.355 1.485 -0.130 0.017 N 77 5 P B DG 22 ? ? OP1 B DG 22 ? ? 1.353 1.485 -0.132 0.017 N 78 5 P B DG 22 ? ? OP2 B DG 22 ? ? 1.356 1.485 -0.129 0.017 N 79 5 P B DG 24 ? ? OP1 B DG 24 ? ? 1.352 1.485 -0.133 0.017 N 80 5 P B DG 24 ? ? OP2 B DG 24 ? ? 1.357 1.485 -0.128 0.017 N 81 6 P A DG 3 ? ? OP1 A DG 3 ? ? 1.352 1.485 -0.133 0.017 N 82 6 P A DG 3 ? ? OP2 A DG 3 ? ? 1.355 1.485 -0.130 0.017 N 83 6 P A DT 5 ? ? OP1 A DT 5 ? ? 1.355 1.485 -0.130 0.017 N 84 6 P A DT 5 ? ? OP2 A DT 5 ? ? 1.351 1.485 -0.134 0.017 N 85 6 P A DG 10 ? ? OP1 A DG 10 ? ? 1.355 1.485 -0.130 0.017 N 86 6 P A DG 10 ? ? OP2 A DG 10 ? ? 1.353 1.485 -0.132 0.017 N 87 6 P A DG 12 ? ? OP1 A DG 12 ? ? 1.356 1.485 -0.129 0.017 N 88 6 P A DG 12 ? ? OP2 A DG 12 ? ? 1.351 1.485 -0.134 0.017 N 89 6 P B DG 15 ? ? OP1 B DG 15 ? ? 1.356 1.485 -0.129 0.017 N 90 6 P B DG 15 ? ? OP2 B DG 15 ? ? 1.351 1.485 -0.134 0.017 N 91 6 P B DT 17 ? ? OP1 B DT 17 ? ? 1.351 1.485 -0.134 0.017 N 92 6 P B DT 17 ? ? OP2 B DT 17 ? ? 1.356 1.485 -0.129 0.017 N 93 6 P B DG 22 ? ? OP1 B DG 22 ? ? 1.352 1.485 -0.133 0.017 N 94 6 P B DG 22 ? ? OP2 B DG 22 ? ? 1.355 1.485 -0.130 0.017 N 95 6 P B DG 24 ? ? OP1 B DG 24 ? ? 1.352 1.485 -0.133 0.017 N 96 6 P B DG 24 ? ? OP2 B DG 24 ? ? 1.355 1.485 -0.130 0.017 N 97 7 P A DG 3 ? ? OP1 A DG 3 ? ? 1.352 1.485 -0.133 0.017 N 98 7 P A DG 3 ? ? OP2 A DG 3 ? ? 1.356 1.485 -0.129 0.017 N 99 7 P A DT 5 ? ? OP1 A DT 5 ? ? 1.355 1.485 -0.130 0.017 N 100 7 P A DT 5 ? ? OP2 A DT 5 ? ? 1.351 1.485 -0.134 0.017 N 101 7 P A DG 10 ? ? OP1 A DG 10 ? ? 1.355 1.485 -0.130 0.017 N 102 7 P A DG 10 ? ? OP2 A DG 10 ? ? 1.352 1.485 -0.133 0.017 N 103 7 P A DG 12 ? ? OP1 A DG 12 ? ? 1.356 1.485 -0.129 0.017 N 104 7 P A DG 12 ? ? OP2 A DG 12 ? ? 1.352 1.485 -0.133 0.017 N 105 7 P B DG 15 ? ? OP1 B DG 15 ? ? 1.356 1.485 -0.129 0.017 N 106 7 P B DG 15 ? ? OP2 B DG 15 ? ? 1.352 1.485 -0.133 0.017 N 107 7 P B DT 17 ? ? OP1 B DT 17 ? ? 1.352 1.485 -0.133 0.017 N 108 7 P B DT 17 ? ? OP2 B DT 17 ? ? 1.355 1.485 -0.130 0.017 N 109 7 P B DG 22 ? ? OP1 B DG 22 ? ? 1.351 1.485 -0.134 0.017 N 110 7 P B DG 22 ? ? OP2 B DG 22 ? ? 1.356 1.485 -0.129 0.017 N 111 7 P B DG 24 ? ? OP1 B DG 24 ? ? 1.351 1.485 -0.134 0.017 N 112 7 P B DG 24 ? ? OP2 B DG 24 ? ? 1.356 1.485 -0.129 0.017 N 113 8 P A DG 3 ? ? OP1 A DG 3 ? ? 1.352 1.485 -0.133 0.017 N 114 8 P A DG 3 ? ? OP2 A DG 3 ? ? 1.356 1.485 -0.129 0.017 N 115 8 P A DT 5 ? ? OP1 A DT 5 ? ? 1.353 1.485 -0.132 0.017 N 116 8 P A DT 5 ? ? OP2 A DT 5 ? ? 1.352 1.485 -0.133 0.017 N 117 8 P A DG 10 ? ? OP1 A DG 10 ? ? 1.355 1.485 -0.130 0.017 N 118 8 P A DG 10 ? ? OP2 A DG 10 ? ? 1.353 1.485 -0.132 0.017 N 119 8 P A DG 12 ? ? OP1 A DG 12 ? ? 1.357 1.485 -0.128 0.017 N 120 8 P A DG 12 ? ? OP2 A DG 12 ? ? 1.351 1.485 -0.134 0.017 N 121 8 P B DG 15 ? ? OP1 B DG 15 ? ? 1.355 1.485 -0.130 0.017 N 122 8 P B DG 15 ? ? OP2 B DG 15 ? ? 1.352 1.485 -0.133 0.017 N 123 8 P B DT 17 ? ? OP1 B DT 17 ? ? 1.352 1.485 -0.133 0.017 N 124 8 P B DT 17 ? ? OP2 B DT 17 ? ? 1.354 1.485 -0.131 0.017 N 125 8 P B DG 22 ? ? OP1 B DG 22 ? ? 1.354 1.485 -0.131 0.017 N 126 8 P B DG 22 ? ? OP2 B DG 22 ? ? 1.356 1.485 -0.129 0.017 N 127 8 P B DG 24 ? ? OP1 B DG 24 ? ? 1.351 1.485 -0.134 0.017 N 128 8 P B DG 24 ? ? OP2 B DG 24 ? ? 1.357 1.485 -0.128 0.017 N 129 9 P A DG 3 ? ? OP1 A DG 3 ? ? 1.352 1.485 -0.133 0.017 N 130 9 P A DG 3 ? ? OP2 A DG 3 ? ? 1.355 1.485 -0.130 0.017 N 131 9 P A DT 5 ? ? OP1 A DT 5 ? ? 1.356 1.485 -0.129 0.017 N 132 9 P A DT 5 ? ? OP2 A DT 5 ? ? 1.351 1.485 -0.134 0.017 N 133 9 P A DG 10 ? ? OP1 A DG 10 ? ? 1.356 1.485 -0.129 0.017 N 134 9 P A DG 10 ? ? OP2 A DG 10 ? ? 1.352 1.485 -0.133 0.017 N 135 9 P A DG 12 ? ? OP1 A DG 12 ? ? 1.357 1.485 -0.128 0.017 N 136 9 P A DG 12 ? ? OP2 A DG 12 ? ? 1.352 1.485 -0.133 0.017 N 137 9 P B DG 15 ? ? OP1 B DG 15 ? ? 1.356 1.485 -0.129 0.017 N 138 9 P B DG 15 ? ? OP2 B DG 15 ? ? 1.352 1.485 -0.133 0.017 N 139 9 P B DT 17 ? ? OP1 B DT 17 ? ? 1.351 1.485 -0.134 0.017 N 140 9 P B DT 17 ? ? OP2 B DT 17 ? ? 1.355 1.485 -0.130 0.017 N 141 9 P B DG 22 ? ? OP1 B DG 22 ? ? 1.352 1.485 -0.133 0.017 N 142 9 P B DG 22 ? ? OP2 B DG 22 ? ? 1.357 1.485 -0.128 0.017 N 143 9 P B DG 24 ? ? OP1 B DG 24 ? ? 1.352 1.485 -0.133 0.017 N 144 9 P B DG 24 ? ? OP2 B DG 24 ? ? 1.357 1.485 -0.128 0.017 N 145 10 P A DG 3 ? ? OP1 A DG 3 ? ? 1.352 1.485 -0.133 0.017 N 146 10 P A DG 3 ? ? OP2 A DG 3 ? ? 1.355 1.485 -0.130 0.017 N 147 10 P A DT 5 ? ? OP1 A DT 5 ? ? 1.355 1.485 -0.130 0.017 N 148 10 P A DT 5 ? ? OP2 A DT 5 ? ? 1.352 1.485 -0.133 0.017 N 149 10 P A DG 10 ? ? OP1 A DG 10 ? ? 1.356 1.485 -0.129 0.017 N 150 10 P A DG 10 ? ? OP2 A DG 10 ? ? 1.353 1.485 -0.132 0.017 N 151 10 P A DG 12 ? ? OP1 A DG 12 ? ? 1.357 1.485 -0.128 0.017 N 152 10 P A DG 12 ? ? OP2 A DG 12 ? ? 1.351 1.485 -0.134 0.017 N 153 10 P B DG 15 ? ? OP1 B DG 15 ? ? 1.356 1.485 -0.129 0.017 N 154 10 P B DG 15 ? ? OP2 B DG 15 ? ? 1.351 1.485 -0.134 0.017 N 155 10 P B DT 17 ? ? OP1 B DT 17 ? ? 1.353 1.485 -0.132 0.017 N 156 10 P B DT 17 ? ? OP2 B DT 17 ? ? 1.356 1.485 -0.129 0.017 N 157 10 P B DG 22 ? ? OP1 B DG 22 ? ? 1.352 1.485 -0.133 0.017 N 158 10 P B DG 22 ? ? OP2 B DG 22 ? ? 1.355 1.485 -0.130 0.017 N 159 10 P B DG 24 ? ? OP1 B DG 24 ? ? 1.351 1.485 -0.134 0.017 N 160 10 P B DG 24 ? ? OP2 B DG 24 ? ? 1.357 1.485 -0.128 0.017 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 2 "O4'" A DT 5 ? ? "C4'" A DT 5 ? ? "C3'" A DT 5 ? ? 101.97 104.50 -2.53 0.40 N 2 3 "O4'" B DT 17 ? ? "C4'" B DT 17 ? ? "C3'" B DT 17 ? ? 102.09 104.50 -2.41 0.40 N 3 4 "C1'" A DG 9 ? ? "O4'" A DG 9 ? ? "C4'" A DG 9 ? ? 103.73 110.10 -6.37 1.00 N 4 4 "O4'" B DT 17 ? ? "C4'" B DT 17 ? ? "C3'" B DT 17 ? ? 102.07 104.50 -2.43 0.40 N 5 4 "C1'" B DG 21 ? ? "O4'" B DG 21 ? ? "C4'" B DG 21 ? ? 103.82 110.10 -6.28 1.00 N 6 6 "C1'" A DG 9 ? ? "O4'" A DG 9 ? ? "C4'" A DG 9 ? ? 103.74 110.10 -6.36 1.00 N 7 6 "C1'" B DG 21 ? ? "O4'" B DG 21 ? ? "C4'" B DG 21 ? ? 103.72 110.10 -6.38 1.00 N 8 8 "O4'" A DT 5 ? ? "C4'" A DT 5 ? ? "C3'" A DT 5 ? ? 102.00 104.50 -2.50 0.40 N 9 8 "O4'" B DT 17 ? ? "C4'" B DT 17 ? ? "C3'" B DT 17 ? ? 101.87 104.50 -2.63 0.40 N # _pdbx_nmr_ensemble.entry_id 2AKG _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2AKG _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'closest to the average' # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 '0.005 M DNA, 0.0001 M EDTA-d12, 0.050 M Thallium-Nitrate, pH 6.0, 100% D2O' '100% D2O' 2 '0.005 M DNA, 0.0001 M EDTA-d12, 0.050 M Thallium-Nitrate, pH 6.0, 90% H2O/10% D2O' '90% H2O/10% D2O' # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature_units 1 298 1 6.5 . atm K 2 278 1 6.5 . atm K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 '2D NOESY' 1 2 1 DQF-COSY 1 3 1 '31P-1H COSY' 1 4 2 '2D NOESY' 2 # _pdbx_nmr_details.entry_id 2AKG _pdbx_nmr_details.text 'This structure was determined without the use of isotopically enriched nucleotides.' # _pdbx_nmr_refine.entry_id 2AKG _pdbx_nmr_refine.method ;(1) distance geometry with simulated annealing; (2) torsion angle dynamics (2000 K for 60 ps with 15 fs timesteps); (3) cartesian dynamics (1000 K for 5 ps with 5 fs timesteps); (4) restrained molecular dynamics (100 cycles of 200 steps each) ; _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection VNMR 6.1b 'Varian, Inc' 1 processing NMRPipe . 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer, Bax' 2 'data analysis' Sparky 3.110 'Goddard and Kneller' 3 'iterative matrix relaxation' CNS 1.1 'Brunger, Adams, Clore, Delano, Gros, Grosse-Kunstleve, Jiang, Kuszewski, Nilges, Pannu, Read, Rice, Simonson, Warren' 4 refinement CNS 1.1 'Brunger, Adams, Clore, Delano, Gros, Grosse-Kunstleve, Jiang, Kuszewski, Nilges, Pannu, Read, Rice, Simonson, Warren' 5 'structure solution' CNS 1.1 'Brunger, Adams, Clore, Delano, Gros, Grosse-Kunstleve, Jiang, Kuszewski, Nilges, Pannu, Read, Rice, Simonson, Warren' 6 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DG OP3 O N N 1 DG P P N N 2 DG OP1 O N N 3 DG OP2 O N N 4 DG "O5'" O N N 5 DG "C5'" C N N 6 DG "C4'" C N R 7 DG "O4'" O N N 8 DG "C3'" C N S 9 DG "O3'" O N N 10 DG "C2'" C N N 11 DG "C1'" C N R 12 DG N9 N Y N 13 DG C8 C Y N 14 DG N7 N Y N 15 DG C5 C Y N 16 DG C6 C N N 17 DG O6 O N N 18 DG N1 N N N 19 DG C2 C N N 20 DG N2 N N N 21 DG N3 N N N 22 DG C4 C Y N 23 DG HOP3 H N N 24 DG HOP2 H N N 25 DG "H5'" H N N 26 DG "H5''" H N N 27 DG "H4'" H N N 28 DG "H3'" H N N 29 DG "HO3'" H N N 30 DG "H2'" H N N 31 DG "H2''" H N N 32 DG "H1'" H N N 33 DG H8 H N N 34 DG H1 H N N 35 DG H21 H N N 36 DG H22 H N N 37 DT OP3 O N N 38 DT P P N N 39 DT OP1 O N N 40 DT OP2 O N N 41 DT "O5'" O N N 42 DT "C5'" C N N 43 DT "C4'" C N R 44 DT "O4'" O N N 45 DT "C3'" C N S 46 DT "O3'" O N N 47 DT "C2'" C N N 48 DT "C1'" C N R 49 DT N1 N N N 50 DT C2 C N N 51 DT O2 O N N 52 DT N3 N N N 53 DT C4 C N N 54 DT O4 O N N 55 DT C5 C N N 56 DT C7 C N N 57 DT C6 C N N 58 DT HOP3 H N N 59 DT HOP2 H N N 60 DT "H5'" H N N 61 DT "H5''" H N N 62 DT "H4'" H N N 63 DT "H3'" H N N 64 DT "HO3'" H N N 65 DT "H2'" H N N 66 DT "H2''" H N N 67 DT "H1'" H N N 68 DT H3 H N N 69 DT H71 H N N 70 DT H72 H N N 71 DT H73 H N N 72 DT H6 H N N 73 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DG OP3 P sing N N 1 DG OP3 HOP3 sing N N 2 DG P OP1 doub N N 3 DG P OP2 sing N N 4 DG P "O5'" sing N N 5 DG OP2 HOP2 sing N N 6 DG "O5'" "C5'" sing N N 7 DG "C5'" "C4'" sing N N 8 DG "C5'" "H5'" sing N N 9 DG "C5'" "H5''" sing N N 10 DG "C4'" "O4'" sing N N 11 DG "C4'" "C3'" sing N N 12 DG "C4'" "H4'" sing N N 13 DG "O4'" "C1'" sing N N 14 DG "C3'" "O3'" sing N N 15 DG "C3'" "C2'" sing N N 16 DG "C3'" "H3'" sing N N 17 DG "O3'" "HO3'" sing N N 18 DG "C2'" "C1'" sing N N 19 DG "C2'" "H2'" sing N N 20 DG "C2'" "H2''" sing N N 21 DG "C1'" N9 sing N N 22 DG "C1'" "H1'" sing N N 23 DG N9 C8 sing Y N 24 DG N9 C4 sing Y N 25 DG C8 N7 doub Y N 26 DG C8 H8 sing N N 27 DG N7 C5 sing Y N 28 DG C5 C6 sing N N 29 DG C5 C4 doub Y N 30 DG C6 O6 doub N N 31 DG C6 N1 sing N N 32 DG N1 C2 sing N N 33 DG N1 H1 sing N N 34 DG C2 N2 sing N N 35 DG C2 N3 doub N N 36 DG N2 H21 sing N N 37 DG N2 H22 sing N N 38 DG N3 C4 sing N N 39 DT OP3 P sing N N 40 DT OP3 HOP3 sing N N 41 DT P OP1 doub N N 42 DT P OP2 sing N N 43 DT P "O5'" sing N N 44 DT OP2 HOP2 sing N N 45 DT "O5'" "C5'" sing N N 46 DT "C5'" "C4'" sing N N 47 DT "C5'" "H5'" sing N N 48 DT "C5'" "H5''" sing N N 49 DT "C4'" "O4'" sing N N 50 DT "C4'" "C3'" sing N N 51 DT "C4'" "H4'" sing N N 52 DT "O4'" "C1'" sing N N 53 DT "C3'" "O3'" sing N N 54 DT "C3'" "C2'" sing N N 55 DT "C3'" "H3'" sing N N 56 DT "O3'" "HO3'" sing N N 57 DT "C2'" "C1'" sing N N 58 DT "C2'" "H2'" sing N N 59 DT "C2'" "H2''" sing N N 60 DT "C1'" N1 sing N N 61 DT "C1'" "H1'" sing N N 62 DT N1 C2 sing N N 63 DT N1 C6 sing N N 64 DT C2 O2 doub N N 65 DT C2 N3 sing N N 66 DT N3 C4 sing N N 67 DT N3 H3 sing N N 68 DT C4 O4 doub N N 69 DT C4 C5 sing N N 70 DT C5 C7 sing N N 71 DT C5 C6 doub N N 72 DT C7 H71 sing N N 73 DT C7 H72 sing N N 74 DT C7 H73 sing N N 75 DT C6 H6 sing N N 76 # _ndb_struct_conf_na.entry_id 2AKG _ndb_struct_conf_na.feature 'quadruple helix' # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.type 1 UNITYPLUS Varian 600 ? 2 INOVA Varian 500 ? # _atom_sites.entry_id 2AKG _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_