HEADER PLANT PROTEIN 10-AUG-05 2AMZ OBSLTE 26-JUN-07 2AMZ 2Q3N TITLE AGGLUTININ FROM ABRUS PRECATORIUS (APA I) COMPND MOL_ID: 1; COMPND 2 MOLECULE: AGGLUTININ; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: TOXIN (RESIDUE 22-268); COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: AGGLUTININ; COMPND 7 CHAIN: B; COMPND 8 FRAGMENT: LECTIN (RESIDUE 287-547) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ABRUS PRECATORIUS; SOURCE 3 OTHER_DETAILS: SEED; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: ABRUS PRECATORIUS; SOURCE 6 OTHER_DETAILS: SEED KEYWDS RIBOSOME-INACTIVATING PROTEIN, IMMUNOTOXIN, AGGLUTININ ABRIN EXPDTA X-RAY DIFFRACTION AUTHOR A.BAGARIA,K.SURENDRANATH,U.A.RAMAGOPAL,A.A.KARANDE, AUTHOR 2 S.RAMAKUMAR REVDAT 3 26-JUN-07 2AMZ 1 OBSLTE REVDAT 2 21-NOV-06 2AMZ 1 JRNL REVDAT 1 01-AUG-06 2AMZ 0 JRNL AUTH A.BAGARIA,K.SURENDRANATH,U.A.RAMAGOPAL,S.RAMAKUMAR, JRNL AUTH 2 A.A.KARANDE JRNL TITL STRUCTURE-FUNCTION ANALYSIS AND INSIGHTS INTO THE JRNL TITL 2 REDUCED TOXICITY OF ABRUS PRECATORIUS AGGLUTININ I JRNL TITL 3 IN RELATION TO ABRIN. JRNL REF J.BIOL.CHEM. V. 281 34465 2006 JRNL REFN ASTM JBCHA3 US ISSN 0021-9258 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 3.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.31 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 10246 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1115 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH : 3.50 REMARK 3 BIN RESOLUTION RANGE LOW : 3.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 518 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.2450 REMARK 3 BIN FREE R VALUE SET COUNT : 62 REMARK 3 BIN FREE R VALUE : 0.2990 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 ALL ATOMS : 4025 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.573 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.349 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 47.314 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.915 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.852 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4122 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5617 ; 1.665 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 506 ; 7.980 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 185 ;40.087 ;24.270 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 664 ;22.365 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;19.164 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 635 ; 0.125 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3117 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2016 ; 0.268 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2774 ; 0.326 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 153 ; 0.168 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 33 ; 0.368 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.247 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2567 ; 0.288 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4100 ; 0.530 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1782 ; 0.810 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1517 ; 1.406 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 0 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 166 REMARK 3 ORIGIN FOR THE GROUP (A): 38.2214 60.1619 42.3596 REMARK 3 T TENSOR REMARK 3 T11: -0.2258 T22: -0.3804 REMARK 3 T33: -0.1283 T12: -0.0585 REMARK 3 T13: -0.0092 T23: -0.0229 REMARK 3 L TENSOR REMARK 3 L11: 5.5053 L22: 4.8269 REMARK 3 L33: 5.7973 L12: -1.9855 REMARK 3 L13: 0.5099 L23: 1.3998 REMARK 3 S TENSOR REMARK 3 S11: 0.1898 S12: 0.4848 S13: -0.0315 REMARK 3 S21: -0.7719 S22: -0.2287 S23: 0.0918 REMARK 3 S31: -0.0807 S32: -0.1510 S33: 0.0389 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 167 A 248 REMARK 3 ORIGIN FOR THE GROUP (A): 31.8891 65.1465 61.2270 REMARK 3 T TENSOR REMARK 3 T11: -0.3106 T22: -0.3629 REMARK 3 T33: -0.0725 T12: -0.1824 REMARK 3 T13: -0.0316 T23: -0.1357 REMARK 3 L TENSOR REMARK 3 L11: 5.6156 L22: 6.1917 REMARK 3 L33: 5.7221 L12: -4.0330 REMARK 3 L13: -1.7130 L23: 2.5413 REMARK 3 S TENSOR REMARK 3 S11: -0.0577 S12: -0.2723 S13: -0.0845 REMARK 3 S21: 0.2037 S22: -0.0173 S23: 0.4089 REMARK 3 S31: 0.3613 S32: -0.3465 S33: 0.0750 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 7 B 143 REMARK 3 ORIGIN FOR THE GROUP (A): 18.0633 79.8829 80.4321 REMARK 3 T TENSOR REMARK 3 T11: -0.3307 T22: -0.0753 REMARK 3 T33: 0.0389 T12: -0.0852 REMARK 3 T13: 0.1702 T23: -0.1317 REMARK 3 L TENSOR REMARK 3 L11: 8.0709 L22: 8.1133 REMARK 3 L33: 4.8712 L12: -2.4916 REMARK 3 L13: -2.0454 L23: 1.7017 REMARK 3 S TENSOR REMARK 3 S11: -0.1180 S12: -0.2819 S13: -0.4995 REMARK 3 S21: 0.5365 S22: 0.1004 S23: 0.6987 REMARK 3 S31: 0.2341 S32: -0.1993 S33: 0.0176 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 144 B 267 REMARK 3 ORIGIN FOR THE GROUP (A): 45.2587 75.3699 73.2322 REMARK 3 T TENSOR REMARK 3 T11: -0.2652 T22: -0.0523 REMARK 3 T33: -0.0382 T12: -0.1130 REMARK 3 T13: -0.0734 T23: -0.3160 REMARK 3 L TENSOR REMARK 3 L11: 8.1599 L22: 5.5723 REMARK 3 L33: 4.5940 L12: -0.8351 REMARK 3 L13: -2.3346 L23: 0.1301 REMARK 3 S TENSOR REMARK 3 S11: -0.0620 S12: -0.7981 S13: 0.3074 REMARK 3 S21: 0.5397 S22: 0.4388 S23: -0.6233 REMARK 3 S31: -0.1684 S32: 1.0296 S33: -0.3767 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2AMZ COMPLIES WITH FORMAT V. 3.0, 1-DEC-2006 REMARK 4 REMARK 4 THIS IS THE REMEDIATED VERSION OF THIS PDB ENTRY. REMARK 4 REMEDIATED DATA FILE REVISION 3.101 (2007-05-29) REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB. REMARK 100 THE RCSB ID CODE IS RCSB034082. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-2005 REMARK 200 TEMPERATURE (KELVIN) : 298.0 REMARK 200 PH : 8.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X9A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11360 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.500 REMARK 200 RESOLUTION RANGE LOW (A) : 29.310 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.53900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, TRIS-HCL BUFFER, PH 8.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 1/2-Y,1/2+X,1/2+Z REMARK 290 4555 1/2+Y,1/2-X,1/2+Z REMARK 290 5555 1/2-X,1/2+Y,1/2-Z REMARK 290 6555 1/2+X,1/2-Y,1/2-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 70.56100 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 70.56100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 52.62650 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 70.56100 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 70.56100 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 52.62650 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 70.56100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 70.56100 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 52.62650 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 70.56100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 70.56100 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 52.62650 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 140 CG CD1 CD2 REMARK 470 GLU B 200 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI REMARK 500 O ALA A 72 NH2 ARG A 166 1.97 REMARK 500 O SER A 192 OG1 THR A 196 2.19 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),F6.3) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 3 CB PRO A 3 CG 0.146 REMARK 500 ARG A 166 CB ARG A 166 CG -0.081 REMARK 500 ARG A 166 CG ARG A 166 CD -0.079 REMARK 500 PRO A 248 CB PRO A 248 CG 0.104 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 3 C - N - CD ANGL. DEV. = 10.6 DEGREES REMARK 500 ASP A 59 N - CA - C ANGL. DEV. = 10.2 DEGREES REMARK 500 VAL A 61 N - CA - C ANGL. DEV. =-15.6 DEGREES REMARK 500 THR A 70 N - CA - C ANGL. DEV. = 15.2 DEGREES REMARK 500 ASN A 71 N - CA - C ANGL. DEV. = 11.0 DEGREES REMARK 500 THR A 70 CA - C - N ANGL. DEV. = 11.3 DEGREES REMARK 500 ASN A 71 C - N - CA ANGL. DEV. = 13.8 DEGREES REMARK 500 ALA A 72 N - CA - C ANGL. DEV. =-10.4 DEGREES REMARK 500 TYR A 73 N - CA - C ANGL. DEV. = 19.3 DEGREES REMARK 500 LYS B 241 N - CA - C ANGL. DEV. = 11.1 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 140 -88.15 58.98 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 59 THR A 60 32.10 REMARK 500 THR A 60 VAL A 61 -113.67 REMARK 500 ALA A 72 TYR A 73 102.69 REMARK 500 ALA B 205 THR B 206 34.22 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ABR RELATED DB: PDB DBREF 2AMZ A 2 248 UNP Q9M6E9 Q9M6E9_ABRPR 22 268 DBREF 2AMZ B 7 267 UNP Q9M6E9 Q9M6E9_ABRPR 287 547 SEQRES 1 A 247 ASP PRO ILE LYS PHE THR THR GLY SER ALA THR PRO ALA SEQRES 2 A 247 SER TYR ASN GLN PHE ILE ASP ALA LEU ARG GLU ARG LEU SEQRES 3 A 247 THR GLY GLY LEU ILE TYR GLY ILE PRO VAL LEU ARG ASP SEQRES 4 A 247 PRO SER THR VAL GLU LYS PRO ASN GLN TYR VAL THR VAL SEQRES 5 A 247 GLU LEU SER TYR SER ASP THR VAL SER ILE GLN LEU GLY SEQRES 6 A 247 ILE ASP LEU THR ASN ALA TYR VAL VAL ALA TYR ARG ALA SEQRES 7 A 247 GLY SER GLU SER PHE PHE PHE ARG ASN ALA PRO ALA SER SEQRES 8 A 247 ALA SER THR TYR LEU PHE THR GLY THR GLN GLN TYR SER SEQRES 9 A 247 LEU PRO PHE ASP GLY ASN TYR ASP ASP LEU GLU LYS TRP SEQRES 10 A 247 ALA HIS GLN SER ARG GLN ARG ILE SER LEU GLY LEU GLU SEQRES 11 A 247 ALA LEU ARG GLN GLY ILE LYS PHE LEU ARG SER GLY ALA SEQRES 12 A 247 SER ASP ASP GLU GLU ILE ALA ARG THR LEU ILE VAL ILE SEQRES 13 A 247 ILE GLN MET VAL ALA GLU ALA ALA ARG PHE ARG TYR VAL SEQRES 14 A 247 SER LYS LEU VAL VAL ILE SER LEU SER ASN ARG ALA ALA SEQRES 15 A 247 PHE GLN PRO ASP PRO SER MET LEU SER LEU GLU ASN THR SEQRES 16 A 247 TRP GLU PRO LEU SER ARG ALA VAL GLN HIS THR VAL GLN SEQRES 17 A 247 ASP THR PHE PRO GLN ASN VAL THR LEU ILE ASN VAL ARG SEQRES 18 A 247 GLN GLU ARG VAL VAL VAL SER SER LEU SER HIS PRO SER SEQRES 19 A 247 VAL SER ALA LEU ALA LEU MET LEU PHE VAL CYS ASN PRO SEQRES 1 B 261 ILE CYS SER SER HIS TYR GLU PRO THR VAL ARG ILE GLY SEQRES 2 B 261 GLY ARG ASP GLY LEU CYS VAL ASP VAL SER ASP ASN ALA SEQRES 3 B 261 TYR ASN ASN GLY ASN PRO ILE ILE LEU TRP LYS CYS LYS SEQRES 4 B 261 ASP GLN LEU GLU VAL ASN GLN LEU TRP THR LEU LYS SER SEQRES 5 B 261 ASP LYS THR ILE ARG SER LYS GLY LYS CYS LEU THR THR SEQRES 6 B 261 TYR GLY TYR ALA PRO GLY ASN TYR VAL MET ILE TYR ASP SEQRES 7 B 261 CYS SER SER ALA VAL ALA GLU ALA THR TYR TRP ASP ILE SEQRES 8 B 261 TRP ASP ASN GLY THR ILE ILE ASN PRO LYS SER GLY LEU SEQRES 9 B 261 VAL LEU SER ALA GLU SER SER SER MET GLY GLY THR LEU SEQRES 10 B 261 THR VAL GLN LYS ASN ASP TYR ARG MET ARG GLN GLY TRP SEQRES 11 B 261 ARG THR GLY ASN ASP THR SER PRO PHE VAL THR SER ILE SEQRES 12 B 261 ALA GLY PHE PHE LYS LEU CYS MET GLU ALA HIS GLY ASN SEQRES 13 B 261 SER MET TRP LEU ASP VAL CYS ASP ILE THR LYS GLU GLU SEQRES 14 B 261 GLN GLN TRP ALA VAL TYR PRO ASP GLY SER ILE ARG PRO SEQRES 15 B 261 VAL GLN ASN THR ASN ASN CYS LEU THR CYS GLU GLU HIS SEQRES 16 B 261 LYS GLN GLY ALA THR ILE VAL MET MET GLY CYS SER ASN SEQRES 17 B 261 ALA TRP ALA SER GLN ARG TRP VAL PHE LYS SER ASP GLY SEQRES 18 B 261 THR ILE TYR ASN LEU TYR ASP ASP MET VAL MET ASP VAL SEQRES 19 B 261 LYS SER SER ASP PRO SER LEU LYS GLN ILE ILE LEU TRP SEQRES 20 B 261 PRO TYR THR GLY ASN ALA ASN GLN MET TRP ALA THR LEU SEQRES 21 B 261 PHE HET NAG B 501 15 HET NAG B 601 15 HET MAN A 701 12 HETNAM NAG N-ACETYL-D-GLUCOSAMINE HETNAM MAN ALPHA-D-MANNOSE HETSYN NAG NAG FORMUL 3 NAG 2(C8 H15 N O6) FORMUL 5 MAN C6 H12 O6 HELIX 1 1 THR A 12 THR A 28 1 17 HELIX 2 2 GLU A 45 ASN A 48 5 4 HELIX 3 3 PRO A 90 TYR A 96 1 7 HELIX 4 4 ASN A 111 HIS A 120 1 10 HELIX 5 5 GLY A 129 PHE A 139 1 11 HELIX 6 6 ASP A 146 PHE A 167 1 22 HELIX 7 7 PHE A 167 ARG A 181 1 15 HELIX 8 8 ASP A 187 THR A 196 1 10 HELIX 9 9 THR A 196 THR A 207 1 12 HELIX 10 10 PRO A 234 LEU A 239 5 6 HELIX 11 11 GLY B 20 LEU B 24 5 5 HELIX 12 12 ASP B 30 ALA B 32 5 3 HELIX 13 13 GLU B 49 LEU B 53 5 5 HELIX 14 14 VAL B 89 TYR B 94 5 6 HELIX 15 15 ARG B 131 GLY B 135 5 5 HELIX 16 16 TRP B 216 ARG B 220 5 5 HELIX 17 17 ASN B 258 MET B 262 5 5 SHEET 1 A 6 ILE A 4 THR A 7 0 SHEET 2 A 6 TYR A 50 SER A 56 1 O SER A 56 N PHE A 6 SHEET 3 A 6 SER A 62 ASP A 68 -1 O ILE A 67 N VAL A 51 SHEET 4 A 6 VAL A 74 ALA A 79 -1 O ALA A 76 N GLY A 66 SHEET 5 A 6 GLU A 82 PHE A 85 -1 O PHE A 84 N TYR A 77 SHEET 6 A 6 GLN A 102 SER A 105 1 O GLN A 102 N SER A 83 SHEET 1 B 2 GLY A 30 ILE A 32 0 SHEET 2 B 2 ILE A 35 VAL A 37 -1 O ILE A 35 N ILE A 32 SHEET 1 C 2 THR A 211 ILE A 219 0 SHEET 2 C 2 ARG A 225 SER A 230 -1 O SER A 229 N PHE A 212 SHEET 1 D 7 THR B 15 VAL B 16 0 SHEET 2 D 7 TRP B 54 LEU B 56 -1 O TRP B 54 N VAL B 16 SHEET 3 D 7 ILE B 62 SER B 64 -1 O ARG B 63 N THR B 55 SHEET 4 D 7 LYS B 67 THR B 71 -1 O LEU B 69 N ILE B 62 SHEET 5 D 7 VAL B 80 TYR B 83 -1 O TYR B 83 N CYS B 68 SHEET 6 D 7 ASN B 37 TRP B 42 -1 N ASN B 37 O ILE B 82 SHEET 7 D 7 CYS B 25 VAL B 28 -1 N CYS B 25 O TRP B 42 SHEET 1 E 2 ILE B 18 GLY B 19 0 SHEET 2 E 2 ARG B 137 THR B 138 -1 O ARG B 137 N GLY B 19 SHEET 1 F 2 ASP B 96 ILE B 97 0 SHEET 2 F 2 ILE B 103 ILE B 104 -1 O ILE B 104 N ASP B 96 SHEET 1 G 2 VAL B 111 ALA B 114 0 SHEET 2 G 2 LEU B 123 GLN B 126 -1 O GLN B 126 N VAL B 111 SHEET 1 H 4 ILE B 186 PRO B 188 0 SHEET 2 H 4 TRP B 178 VAL B 180 -1 N ALA B 179 O ARG B 187 SHEET 3 H 4 PHE B 145 ALA B 150 -1 N THR B 147 O TRP B 178 SHEET 4 H 4 ALA B 264 LEU B 266 -1 O LEU B 266 N SER B 148 SHEET 1 I 2 LEU B 155 HIS B 160 0 SHEET 2 I 2 SER B 163 VAL B 168 -1 O ASP B 167 N CYS B 156 SHEET 1 J 2 ASN B 194 CYS B 198 0 SHEET 2 J 2 ILE B 207 GLY B 211 -1 O MET B 210 N CYS B 195 SHEET 1 K 4 VAL B 222 PHE B 223 0 SHEET 2 K 4 ILE B 229 ASN B 231 -1 O TYR B 230 N VAL B 222 SHEET 3 K 4 MET B 236 ASP B 239 -1 O MET B 236 N ASN B 231 SHEET 4 K 4 ILE B 251 TRP B 253 -1 O ILE B 251 N ASP B 239 SSBOND 1 CYS B 25 CYS B 44 SSBOND 2 CYS B 68 CYS B 85 SSBOND 3 CYS B 156 CYS B 169 SSBOND 4 CYS B 195 CYS B 212 SSBOND 5 CYS A 246 CYS B 8 CISPEP 1 THR A 70 ASN A 71 0 -13.84 CISPEP 2 ASN A 71 ALA A 72 0 26.98 CISPEP 3 THR B 138 GLY B 139 0 -0.18 CRYST1 141.122 141.122 105.253 90.00 90.00 90.00 P 42 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007086 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007086 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009501 0.00000