HEADER TRANSFERASE 11-AUG-05 2AN9 TITLE CRYSTAL STRUCTURE OF OLIGOMERIC E.COLI GUANYLATE KINASE IN COMPLEX TITLE 2 WITH GDP COMPND MOL_ID: 1; COMPND 2 MOLECULE: GUANYLATE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GMP KINASE; COMPND 5 EC: 2.7.4.8; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: GMK; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BLI5; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET24A KEYWDS TRANSFERASE, GMP KINASE, GUANYLATE KINASE, OLIGOMERIC EXPDTA X-RAY DIFFRACTION AUTHOR G.HIBLE,L.RENAULT,F.SCHAEFFER,P.CHRISTOVA,A.Z.RADULESCU,C.EVRIN, AUTHOR 2 A.M.GILLES,J.CHERFILS REVDAT 5 25-OCT-23 2AN9 1 REMARK LINK REVDAT 4 13-JUL-11 2AN9 1 VERSN REVDAT 3 24-FEB-09 2AN9 1 VERSN REVDAT 2 17-JAN-06 2AN9 1 JRNL REVDAT 1 30-AUG-05 2AN9 0 JRNL AUTH G.HIBLE,L.RENAULT,F.SCHAEFFER,P.CHRISTOVA,A.Z.RADULESCU, JRNL AUTH 2 C.EVRIN,A.M.GILLES,J.CHERFILS JRNL TITL CALORIMETRIC AND CRYSTALLOGRAPHIC ANALYSIS OF THE OLIGOMERIC JRNL TITL 2 STRUCTURE OF ESCHERICHIA COLI GMP KINASE JRNL REF J.MOL.BIOL. V. 352 1044 2005 JRNL REFN ISSN 0022-2836 JRNL PMID 16140325 JRNL DOI 10.1016/J.JMB.2005.07.042 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.69 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 15672 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 833 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.41 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1115 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.1910 REMARK 3 BIN FREE R VALUE SET COUNT : 57 REMARK 3 BIN FREE R VALUE : 0.3170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3290 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 98 REMARK 3 SOLVENT ATOMS : 185 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 43.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.716 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.295 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.196 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.060 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.888 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3460 ; 0.015 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 3080 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4690 ; 1.478 ; 1.980 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7152 ; 0.848 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 408 ; 6.472 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 512 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3798 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 708 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 743 ; 0.217 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3527 ; 0.229 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 2096 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 178 ; 0.209 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 6 ; 0.140 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 25 ; 0.188 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 83 ; 0.285 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 20 ; 0.229 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2042 ; 0.636 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3286 ; 1.222 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1418 ; 2.003 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1404 ; 3.326 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 36 REMARK 3 RESIDUE RANGE : A 87 A 127 REMARK 3 RESIDUE RANGE : A 159 A 206 REMARK 3 ORIGIN FOR THE GROUP (A): 18.1850 7.6270 7.9060 REMARK 3 T TENSOR REMARK 3 T11: 0.0780 T22: 0.1187 REMARK 3 T33: 0.1052 T12: -0.0167 REMARK 3 T13: 0.0322 T23: -0.0285 REMARK 3 L TENSOR REMARK 3 L11: 1.5323 L22: 2.6628 REMARK 3 L33: 2.0704 L12: -1.0347 REMARK 3 L13: -0.2351 L23: 0.5831 REMARK 3 S TENSOR REMARK 3 S11: 0.0733 S12: 0.1954 S13: 0.1305 REMARK 3 S21: 0.0531 S22: -0.1131 S23: 0.1618 REMARK 3 S31: 0.0163 S32: -0.1749 S33: 0.0398 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 37 A 86 REMARK 3 RESIDUE RANGE : A 601 A 601 REMARK 3 RESIDUE RANGE : A 603 A 603 REMARK 3 ORIGIN FOR THE GROUP (A): 23.4520 3.5020 -12.4240 REMARK 3 T TENSOR REMARK 3 T11: 0.1882 T22: 0.2043 REMARK 3 T33: 0.0416 T12: 0.0820 REMARK 3 T13: 0.0662 T23: -0.0241 REMARK 3 L TENSOR REMARK 3 L11: 6.6665 L22: 9.6843 REMARK 3 L33: 10.1441 L12: 0.3156 REMARK 3 L13: 2.8740 L23: 2.7567 REMARK 3 S TENSOR REMARK 3 S11: 0.0604 S12: 0.4676 S13: -0.1444 REMARK 3 S21: -0.4887 S22: -0.1244 S23: 0.2688 REMARK 3 S31: 0.0328 S32: -0.0772 S33: 0.0640 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 128 A 158 REMARK 3 RESIDUE RANGE : A 602 A 602 REMARK 3 ORIGIN FOR THE GROUP (A): 21.4020 -17.5520 -0.8510 REMARK 3 T TENSOR REMARK 3 T11: 0.2078 T22: 0.1765 REMARK 3 T33: 0.2192 T12: 0.0196 REMARK 3 T13: 0.0176 T23: -0.0418 REMARK 3 L TENSOR REMARK 3 L11: 9.7373 L22: 5.7706 REMARK 3 L33: 2.9419 L12: 4.6126 REMARK 3 L13: -2.5924 L23: 0.0579 REMARK 3 S TENSOR REMARK 3 S11: -0.0805 S12: 0.8415 S13: -0.4784 REMARK 3 S21: -0.6271 S22: 0.0172 S23: -0.1409 REMARK 3 S31: 0.4030 S32: -0.1636 S33: 0.0632 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 36 REMARK 3 RESIDUE RANGE : B 87 B 127 REMARK 3 RESIDUE RANGE : B 159 B 206 REMARK 3 ORIGIN FOR THE GROUP (A): 18.0680 7.0050 28.5860 REMARK 3 T TENSOR REMARK 3 T11: 0.0306 T22: 0.0895 REMARK 3 T33: 0.1098 T12: -0.0265 REMARK 3 T13: 0.0363 T23: -0.0493 REMARK 3 L TENSOR REMARK 3 L11: 1.3509 L22: 2.9820 REMARK 3 L33: 2.5252 L12: -0.3308 REMARK 3 L13: 0.1541 L23: 0.2754 REMARK 3 S TENSOR REMARK 3 S11: 0.0649 S12: 0.0465 S13: -0.1530 REMARK 3 S21: -0.0220 S22: -0.0571 S23: -0.0937 REMARK 3 S31: 0.3127 S32: 0.0925 S33: -0.0078 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 37 B 86 REMARK 3 RESIDUE RANGE : B 1601 B 1601 REMARK 3 RESIDUE RANGE : B 1603 B 1603 REMARK 3 ORIGIN FOR THE GROUP (A): 18.7080 13.8230 48.9720 REMARK 3 T TENSOR REMARK 3 T11: 0.1435 T22: 0.1358 REMARK 3 T33: 0.0839 T12: -0.0684 REMARK 3 T13: -0.0135 T23: -0.0707 REMARK 3 L TENSOR REMARK 3 L11: 7.5447 L22: 6.1408 REMARK 3 L33: 10.4914 L12: -1.4973 REMARK 3 L13: -2.9794 L23: 1.0391 REMARK 3 S TENSOR REMARK 3 S11: -0.0918 S12: -0.6063 S13: -0.0721 REMARK 3 S21: 0.6489 S22: 0.0432 S23: 0.0990 REMARK 3 S31: -0.1352 S32: -0.2354 S33: 0.0486 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 128 B 158 REMARK 3 RESIDUE RANGE : B 1602 B 1602 REMARK 3 ORIGIN FOR THE GROUP (A): 3.1840 27.6690 37.0140 REMARK 3 T TENSOR REMARK 3 T11: 0.1500 T22: 0.0868 REMARK 3 T33: 0.2595 T12: -0.0386 REMARK 3 T13: -0.0056 T23: 0.0055 REMARK 3 L TENSOR REMARK 3 L11: 5.3843 L22: 1.6484 REMARK 3 L33: 1.9528 L12: -0.0215 REMARK 3 L13: -1.8345 L23: 2.5586 REMARK 3 S TENSOR REMARK 3 S11: 0.3319 S12: -0.3530 S13: 0.1394 REMARK 3 S21: 0.4243 S22: -0.2258 S23: -0.0050 REMARK 3 S31: -0.1806 S32: -0.0647 S33: -0.1061 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2AN9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-AUG-05. REMARK 100 THE DEPOSITION ID IS D_1000034092. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-AUG-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16498 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 12.00 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.41 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 11.80 REMARK 200 R MERGE FOR SHELL (I) : 0.14400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 16.40 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1EX7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4% (W/V) PEG 3350, 40MM POTASSIUM REMARK 280 THIOCYANATE, PH 7.4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 75.63600 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 75.63600 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 75.63600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 26870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 54440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -94.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 207 REMARK 465 MET B 1 REMARK 465 ASP B 207 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 190 CG - SD - CE ANGL. DEV. = 9.7 DEGREES REMARK 500 ASP B 60 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP B 132 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP B 173 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 ARG B 196 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 ALA B 199 CA - C - N ANGL. DEV. = -15.3 DEGREES REMARK 500 ALA B 199 O - C - N ANGL. DEV. = 15.1 DEGREES REMARK 500 LEU B 200 N - CA - C ANGL. DEV. = -17.4 DEGREES REMARK 500 LEU B 200 CA - C - N ANGL. DEV. = -13.6 DEGREES REMARK 500 LEU B 200 O - C - N ANGL. DEV. = 12.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 170 -60.75 -91.15 REMARK 500 LEU A 205 42.54 -94.05 REMARK 500 GLU B 52 -62.82 -99.37 REMARK 500 PHE B 78 60.66 38.27 REMARK 500 GLN B 195 -67.47 -93.54 REMARK 500 ASP B 198 91.89 -52.34 REMARK 500 ALA B 199 107.48 67.47 REMARK 500 LEU B 200 -24.70 -158.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LYS B 194 -11.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 603 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 38 OG REMARK 620 2 ASP A 102 O 115.9 REMARK 620 3 GDP A 601 N7 73.5 72.0 REMARK 620 4 HOH A 623 O 88.0 85.5 139.8 REMARK 620 5 HOH A 625 O 76.2 155.9 132.1 73.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B1603 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 38 OG REMARK 620 2 ASP B 102 O 113.6 REMARK 620 3 GDP B1601 N7 72.5 72.2 REMARK 620 4 HOH B1604 O 145.4 98.3 106.9 REMARK 620 5 HOH B1605 O 76.6 84.8 129.0 121.3 REMARK 620 6 HOH B1638 O 74.4 161.3 126.3 79.6 80.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K B 1603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GMP A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP B 1601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GMP B 1602 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ANB RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF OLIGOMERIC E.COLI GUANYLATE KINASE IN COMPLEX REMARK 900 WITH GMP REMARK 900 RELATED ID: 2ANC RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF UNLIGANDED FORM OF OLIGOMERIC E.COLI GUANYLATE REMARK 900 KINASE DBREF 2AN9 A 1 207 UNP P60546 KGUA_ECOLI 1 207 DBREF 2AN9 B 1 207 UNP P60546 KGUA_ECOLI 1 207 SEQRES 1 A 207 MET ALA GLN GLY THR LEU TYR ILE VAL SER ALA PRO SER SEQRES 2 A 207 GLY ALA GLY LYS SER SER LEU ILE GLN ALA LEU LEU LYS SEQRES 3 A 207 THR GLN PRO LEU TYR ASP THR GLN VAL SER VAL SER HIS SEQRES 4 A 207 THR THR ARG GLN PRO ARG PRO GLY GLU VAL HIS GLY GLU SEQRES 5 A 207 HIS TYR PHE PHE VAL ASN HIS ASP GLU PHE LYS GLU MET SEQRES 6 A 207 ILE SER ARG ASP ALA PHE LEU GLU HIS ALA GLU VAL PHE SEQRES 7 A 207 GLY ASN TYR TYR GLY THR SER ARG GLU ALA ILE GLU GLN SEQRES 8 A 207 VAL LEU ALA THR GLY VAL ASP VAL PHE LEU ASP ILE ASP SEQRES 9 A 207 TRP GLN GLY ALA GLN GLN ILE ARG GLN LYS MET PRO HIS SEQRES 10 A 207 ALA ARG SER ILE PHE ILE LEU PRO PRO SER LYS ILE GLU SEQRES 11 A 207 LEU ASP ARG ARG LEU ARG GLY ARG GLY GLN ASP SER GLU SEQRES 12 A 207 GLU VAL ILE ALA LYS ARG MET ALA GLN ALA VAL ALA GLU SEQRES 13 A 207 MET SER HIS TYR ALA GLU TYR ASP TYR LEU ILE VAL ASN SEQRES 14 A 207 ASP ASP PHE ASP THR ALA LEU THR ASP LEU LYS THR ILE SEQRES 15 A 207 ILE ARG ALA GLU ARG LEU ARG MET SER ARG GLN LYS GLN SEQRES 16 A 207 ARG HIS ASP ALA LEU ILE SER LYS LEU LEU ALA ASP SEQRES 1 B 207 MET ALA GLN GLY THR LEU TYR ILE VAL SER ALA PRO SER SEQRES 2 B 207 GLY ALA GLY LYS SER SER LEU ILE GLN ALA LEU LEU LYS SEQRES 3 B 207 THR GLN PRO LEU TYR ASP THR GLN VAL SER VAL SER HIS SEQRES 4 B 207 THR THR ARG GLN PRO ARG PRO GLY GLU VAL HIS GLY GLU SEQRES 5 B 207 HIS TYR PHE PHE VAL ASN HIS ASP GLU PHE LYS GLU MET SEQRES 6 B 207 ILE SER ARG ASP ALA PHE LEU GLU HIS ALA GLU VAL PHE SEQRES 7 B 207 GLY ASN TYR TYR GLY THR SER ARG GLU ALA ILE GLU GLN SEQRES 8 B 207 VAL LEU ALA THR GLY VAL ASP VAL PHE LEU ASP ILE ASP SEQRES 9 B 207 TRP GLN GLY ALA GLN GLN ILE ARG GLN LYS MET PRO HIS SEQRES 10 B 207 ALA ARG SER ILE PHE ILE LEU PRO PRO SER LYS ILE GLU SEQRES 11 B 207 LEU ASP ARG ARG LEU ARG GLY ARG GLY GLN ASP SER GLU SEQRES 12 B 207 GLU VAL ILE ALA LYS ARG MET ALA GLN ALA VAL ALA GLU SEQRES 13 B 207 MET SER HIS TYR ALA GLU TYR ASP TYR LEU ILE VAL ASN SEQRES 14 B 207 ASP ASP PHE ASP THR ALA LEU THR ASP LEU LYS THR ILE SEQRES 15 B 207 ILE ARG ALA GLU ARG LEU ARG MET SER ARG GLN LYS GLN SEQRES 16 B 207 ARG HIS ASP ALA LEU ILE SER LYS LEU LEU ALA ASP HET K A 603 1 HET GDP A 601 28 HET GMP A 602 20 HET K B1603 1 HET GDP B1601 28 HET GMP B1602 20 HETNAM K POTASSIUM ION HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM GMP GUANOSINE FORMUL 3 K 2(K 1+) FORMUL 4 GDP 2(C10 H15 N5 O11 P2) FORMUL 5 GMP 2(C10 H13 N5 O5) FORMUL 9 HOH *185(H2 O) HELIX 1 1 GLY A 16 THR A 27 1 12 HELIX 2 2 ASN A 58 ARG A 68 1 11 HELIX 3 3 ARG A 86 THR A 95 1 10 HELIX 4 4 ASP A 104 MET A 115 1 12 HELIX 5 5 SER A 127 GLY A 137 1 11 HELIX 6 6 SER A 142 SER A 158 1 17 HELIX 7 7 HIS A 159 TYR A 163 5 5 HELIX 8 8 ASP A 171 ARG A 189 1 19 HELIX 9 9 ARG A 189 HIS A 197 1 9 HELIX 10 10 HIS A 197 LEU A 205 1 9 HELIX 11 11 GLY B 16 THR B 27 1 12 HELIX 12 12 ASN B 58 ARG B 68 1 11 HELIX 13 13 ARG B 86 ALA B 94 1 9 HELIX 14 14 ASP B 104 MET B 115 1 12 HELIX 15 15 SER B 127 GLY B 137 1 11 HELIX 16 16 SER B 142 SER B 158 1 17 HELIX 17 17 HIS B 159 TYR B 163 5 5 HELIX 18 18 ASP B 171 LEU B 188 1 18 HELIX 19 19 ARG B 189 HIS B 197 1 9 SHEET 1 A 5 THR A 33 VAL A 35 0 SHEET 2 A 5 ASP A 98 ASP A 102 1 O PHE A 100 N GLN A 34 SHEET 3 A 5 LEU A 6 SER A 10 1 N TYR A 7 O VAL A 99 SHEET 4 A 5 ARG A 119 LEU A 124 1 O ILE A 121 N ILE A 8 SHEET 5 A 5 TYR A 165 VAL A 168 1 O ILE A 167 N LEU A 124 SHEET 1 B 4 TYR A 54 PHE A 56 0 SHEET 2 B 4 SER A 38 THR A 40 1 N SER A 38 O PHE A 55 SHEET 3 B 4 ASN A 80 SER A 85 -1 O GLY A 83 N HIS A 39 SHEET 4 B 4 PHE A 71 VAL A 77 -1 N ALA A 75 O TYR A 82 SHEET 1 C 5 THR B 33 VAL B 35 0 SHEET 2 C 5 ASP B 98 ASP B 102 1 O PHE B 100 N GLN B 34 SHEET 3 C 5 LEU B 6 SER B 10 1 N TYR B 7 O VAL B 99 SHEET 4 C 5 ARG B 119 LEU B 124 1 O ILE B 121 N ILE B 8 SHEET 5 C 5 TYR B 165 VAL B 168 1 O ILE B 167 N LEU B 124 SHEET 1 D 4 TYR B 54 PHE B 56 0 SHEET 2 D 4 SER B 38 THR B 40 1 N SER B 38 O PHE B 55 SHEET 3 D 4 ASN B 80 SER B 85 -1 O GLY B 83 N HIS B 39 SHEET 4 D 4 PHE B 71 VAL B 77 -1 N VAL B 77 O ASN B 80 LINK OG SER A 38 K K A 603 1555 1555 2.59 LINK O ASP A 102 K K A 603 1555 1555 2.84 LINK N7 GDP A 601 K K A 603 1555 1555 2.95 LINK K K A 603 O HOH A 623 1555 1555 2.57 LINK K K A 603 O HOH A 625 1555 1555 2.77 LINK OG SER B 38 K K B1603 1555 1555 2.68 LINK O ASP B 102 K K B1603 1555 1555 2.77 LINK N7 GDP B1601 K K B1603 1555 1555 3.01 LINK K K B1603 O HOH B1604 1555 1555 2.80 LINK K K B1603 O HOH B1605 1555 1555 2.88 LINK K K B1603 O HOH B1638 1555 1555 2.66 SITE 1 AC1 5 SER A 38 ASP A 102 GDP A 601 HOH A 623 SITE 2 AC1 5 HOH A 625 SITE 1 AC2 6 SER B 38 ASP B 102 GDP B1601 HOH B1604 SITE 2 AC2 6 HOH B1605 HOH B1638 SITE 1 AC3 21 SER A 18 SER A 38 ARG A 42 ARG A 45 SITE 2 AC3 21 TYR A 54 GLU A 73 VAL A 77 TYR A 82 SITE 3 AC3 21 GLY A 83 THR A 84 ASP A 102 ILE A 103 SITE 4 AC3 21 ASP A 104 GLY A 107 K A 603 HOH A 631 SITE 5 AC3 21 HOH A 640 HOH A 645 HOH A 657 HOH A 662 SITE 6 AC3 21 HOH A 684 SITE 1 AC4 12 LEU A 30 TYR A 31 GLN A 34 THR A 95 SITE 2 AC4 12 VAL A 97 ARG A 133 ARG A 134 GLY A 137 SITE 3 AC4 12 ARG A 138 HOH A 615 HOH A 626 HOH A 634 SITE 1 AC5 17 SER B 38 ARG B 42 ARG B 45 TYR B 54 SITE 2 AC5 17 GLU B 73 TYR B 82 GLY B 83 THR B 84 SITE 3 AC5 17 ASP B 102 ILE B 103 ASP B 104 GLY B 107 SITE 4 AC5 17 K B1603 HOH B1637 HOH B1675 HOH B1676 SITE 5 AC5 17 HOH B1698 SITE 1 AC6 12 TYR B 31 GLN B 34 THR B 95 VAL B 97 SITE 2 AC6 12 ARG B 133 ARG B 134 GLY B 137 ARG B 138 SITE 3 AC6 12 HOH B1624 HOH B1631 HOH B1670 HOH B1684 CRYST1 68.225 68.225 151.272 90.00 90.00 120.00 P 63 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014657 0.008462 0.000000 0.00000 SCALE2 0.000000 0.016925 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006611 0.00000