HEADER TRANSFERASE 11-AUG-05 2ANB TITLE CRYSTAL STRUCTURE OF OLIGOMERIC E.COLI GUANYLATE KINASE IN COMPLEX TITLE 2 WITH GMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: GUANYLATE KINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GMP KINASE; COMPND 5 EC: 2.7.4.8; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: GMK; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BLI5; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET24A KEYWDS TRANSFERASE, GMP KINASE, GUANYLATE KINASE, OLIGOMERIC EXPDTA X-RAY DIFFRACTION AUTHOR G.HIBLE,L.RENAULT,F.SCHAEFFER,P.CHRISTOVA,A.Z.RADULESCU,C.EVRIN, AUTHOR 2 A.M.GILLES,J.CHERFILS REVDAT 5 25-OCT-23 2ANB 1 REMARK REVDAT 4 13-JUL-11 2ANB 1 VERSN REVDAT 3 24-FEB-09 2ANB 1 VERSN REVDAT 2 17-JAN-06 2ANB 1 JRNL REVDAT 1 30-AUG-05 2ANB 0 JRNL AUTH G.HIBLE,L.RENAULT,F.SCHAEFFER,P.CHRISTOVA,A.Z.RADULESCU, JRNL AUTH 2 C.EVRIN,A.M.GILLES,J.CHERFILS JRNL TITL CALORIMETRIC AND CRYSTALLOGRAPHIC ANALYSIS OF THE OLIGOMERIC JRNL TITL 2 STRUCTURE OF ESCHERICHIA COLI GMP KINASE JRNL REF J.MOL.BIOL. V. 352 1044 2005 JRNL REFN ISSN 0022-2836 JRNL PMID 16140325 JRNL DOI 10.1016/J.JMB.2005.07.042 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 7354 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 368 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.97 REMARK 3 REFLECTION IN BIN (WORKING SET) : 526 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.10 REMARK 3 BIN R VALUE (WORKING SET) : 0.2450 REMARK 3 BIN FREE R VALUE SET COUNT : 27 REMARK 3 BIN FREE R VALUE : 0.2730 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1650 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 12 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 67.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.004 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.342 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.280 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.365 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1709 ; 0.010 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1531 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2314 ; 1.435 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3550 ; 0.792 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 205 ; 5.733 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 253 ; 0.066 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1889 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 355 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 360 ; 0.214 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1756 ; 0.215 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1096 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 24 ; 0.117 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 4 ; 0.140 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 62 ; 0.202 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1025 ; 0.354 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1649 ; 0.717 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 684 ; 1.132 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 665 ; 2.066 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 35 REMARK 3 RESIDUE RANGE : A 87 A 127 REMARK 3 RESIDUE RANGE : A 159 A 207 REMARK 3 ORIGIN FOR THE GROUP (A): 34.3070 30.6060 62.0190 REMARK 3 T TENSOR REMARK 3 T11: 0.0438 T22: 0.3361 REMARK 3 T33: 0.1536 T12: -0.0386 REMARK 3 T13: 0.0198 T23: -0.1920 REMARK 3 L TENSOR REMARK 3 L11: 3.7248 L22: 3.6810 REMARK 3 L33: 2.2221 L12: -0.3222 REMARK 3 L13: -0.5391 L23: -1.2238 REMARK 3 S TENSOR REMARK 3 S11: -0.4063 S12: 0.1270 S13: 0.1208 REMARK 3 S21: 0.2739 S22: -0.0260 S23: 0.0753 REMARK 3 S31: -0.2068 S32: -0.2425 S33: 0.4323 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 36 A 86 REMARK 3 RESIDUE RANGE : A 301 A 302 REMARK 3 ORIGIN FOR THE GROUP (A): 31.5590 22.6630 81.8390 REMARK 3 T TENSOR REMARK 3 T11: 0.3643 T22: 0.5406 REMARK 3 T33: 0.2193 T12: 0.2707 REMARK 3 T13: 0.2194 T23: 0.0904 REMARK 3 L TENSOR REMARK 3 L11: 9.5800 L22: 11.5342 REMARK 3 L33: 7.1559 L12: -2.3266 REMARK 3 L13: -3.3464 L23: 1.1916 REMARK 3 S TENSOR REMARK 3 S11: -1.1770 S12: -1.6744 S13: -0.9426 REMARK 3 S21: 1.3304 S22: 0.7602 S23: -0.4990 REMARK 3 S31: 0.7063 S32: 0.3360 S33: 0.4168 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 128 A 158 REMARK 3 ORIGIN FOR THE GROUP (A): 40.0610 8.0090 70.1880 REMARK 3 T TENSOR REMARK 3 T11: 0.4806 T22: 0.2212 REMARK 3 T33: 1.0312 T12: -0.0418 REMARK 3 T13: 0.5699 T23: -0.0354 REMARK 3 L TENSOR REMARK 3 L11: 12.2742 L22: 1.5025 REMARK 3 L33: 8.4650 L12: -1.1000 REMARK 3 L13: 1.7303 L23: -0.4846 REMARK 3 S TENSOR REMARK 3 S11: -0.8985 S12: -0.7161 S13: -2.2680 REMARK 3 S21: 0.8413 S22: 0.0784 S23: 0.3079 REMARK 3 S31: 1.2405 S32: -0.0940 S33: 0.8201 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2ANB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-AUG-05. REMARK 100 THE DEPOSITION ID IS D_1000034093. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9756 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7689 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 19.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 10.70 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 9.70 REMARK 200 R MERGE FOR SHELL (I) : 0.43900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2AN9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.4M AMMONIUM SULFATE, 0.2M LITHIUM REMARK 280 CHLORIDE, 0.1M SODIUM ACETATE, PH 5.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 53.36400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 30.80972 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 51.75867 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 53.36400 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 30.80972 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 51.75867 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 53.36400 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 30.80972 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 51.75867 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 53.36400 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 30.80972 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 51.75867 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 53.36400 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 30.80972 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 51.75867 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 53.36400 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 30.80972 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 51.75867 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 61.61944 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 103.51733 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 61.61944 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 103.51733 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 61.61944 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 103.51733 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 61.61944 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 103.51733 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 61.61944 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 103.51733 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 61.61944 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 103.51733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF A MONOMER. THE BIOLOGICAL ASSEMBLY IS A HEXAMER REMARK 300 GENERATED FROM THE MONOMER IN THE ASYMMETRIC UNIT BY THE 5 REMARK 300 OPERATIONS: 1:MATRIX= ( -0.50000 -0.86603 0.00000 ) ( 0.86603 - REMARK 300 0.50000 0.00000 ) ( 0.00000 0.00000 1.00000 ) TRANSLATION= ( REMARK 300 106.72798 -0.00010 0.00001 ) 2: MATRIX= ( -0.50000 0.86603 0.00000 ) REMARK 300 ( -0.86603 -0.50000 0.00000 ) ( 0.00000 0.00000 1.00000 ) REMARK 300 TRANSLATION= ( 53.36393 92.42904 -0.00008 ) 3:MATRIX= ( -0.50000 REMARK 300 0.86602 0.00000 ) ( 0.86602 0.50000 0.00000 ) ( 0.00000 0.00000 - REMARK 300 1.00000 ) TRANSLATION= ( 53.36408 -30.80985 103.51692 ) 4:MATRIX= ( REMARK 300 -0.50000 -0.86603 0.00000 ) ( -0.86603 0.50000 0.00000 ) ( 0.00000 REMARK 300 0.00000 -1.00000 ) TRANSLATION= ( 106.72797 61.61937 103.51704 ) 5: REMARK 300 MATRIX= ( 1.00000 0.00000 0.00000 ) ( 0.00000 -1.00000 0.00000 ) ( REMARK 300 0.00000 0.00000 -1.00000 ) TRANSLATION= ( 0.00000 61.61900 REMARK 300 103.51700 ) REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 106.72800 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 53.36400 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 92.42916 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 53.36400 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 -30.80972 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 103.51733 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 61.61944 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 103.51733 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 106.72800 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 61.61944 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 103.51733 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -77.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 61.61944 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 103.51733 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 307 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 207 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 132 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 68 0.94 -67.71 REMARK 500 ASP A 141 167.51 82.24 REMARK 500 ALA A 199 -71.64 -33.81 REMARK 500 ALA A 206 -92.80 -158.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 5GP A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2AN9 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF OLIGOMERIC E.COLI GUANYLATE KINASE IN COMPLEX REMARK 900 WITH GDP REMARK 900 RELATED ID: 2ANC RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF UNLIGANDED FORM OF OLIGOMERIC E.COLI GUANYLATE REMARK 900 KINASE DBREF 2ANB A 1 207 UNP P60546 KGUA_ECOLI 1 207 SEQRES 1 A 207 MET ALA GLN GLY THR LEU TYR ILE VAL SER ALA PRO SER SEQRES 2 A 207 GLY ALA GLY LYS SER SER LEU ILE GLN ALA LEU LEU LYS SEQRES 3 A 207 THR GLN PRO LEU TYR ASP THR GLN VAL SER VAL SER HIS SEQRES 4 A 207 THR THR ARG GLN PRO ARG PRO GLY GLU VAL HIS GLY GLU SEQRES 5 A 207 HIS TYR PHE PHE VAL ASN HIS ASP GLU PHE LYS GLU MET SEQRES 6 A 207 ILE SER ARG ASP ALA PHE LEU GLU HIS ALA GLU VAL PHE SEQRES 7 A 207 GLY ASN TYR TYR GLY THR SER ARG GLU ALA ILE GLU GLN SEQRES 8 A 207 VAL LEU ALA THR GLY VAL ASP VAL PHE LEU ASP ILE ASP SEQRES 9 A 207 TRP GLN GLY ALA GLN GLN ILE ARG GLN LYS MET PRO HIS SEQRES 10 A 207 ALA ARG SER ILE PHE ILE LEU PRO PRO SER LYS ILE GLU SEQRES 11 A 207 LEU ASP ARG ARG LEU ARG GLY ARG GLY GLN ASP SER GLU SEQRES 12 A 207 GLU VAL ILE ALA LYS ARG MET ALA GLN ALA VAL ALA GLU SEQRES 13 A 207 MET SER HIS TYR ALA GLU TYR ASP TYR LEU ILE VAL ASN SEQRES 14 A 207 ASP ASP PHE ASP THR ALA LEU THR ASP LEU LYS THR ILE SEQRES 15 A 207 ILE ARG ALA GLU ARG LEU ARG MET SER ARG GLN LYS GLN SEQRES 16 A 207 ARG HIS ASP ALA LEU ILE SER LYS LEU LEU ALA ASP HET SO4 A 302 5 HET 5GP A 301 24 HETNAM SO4 SULFATE ION HETNAM 5GP GUANOSINE-5'-MONOPHOSPHATE FORMUL 2 SO4 O4 S 2- FORMUL 3 5GP C10 H14 N5 O8 P FORMUL 4 HOH *12(H2 O) HELIX 1 1 GLY A 16 LYS A 26 1 11 HELIX 2 2 ASN A 58 ARG A 68 1 11 HELIX 3 3 ARG A 86 THR A 95 1 10 HELIX 4 4 ASP A 104 MET A 115 1 12 HELIX 5 5 SER A 127 ARG A 138 1 12 HELIX 6 6 SER A 142 SER A 158 1 17 HELIX 7 7 HIS A 159 TYR A 163 5 5 HELIX 8 8 ASP A 171 ARG A 187 1 17 HELIX 9 9 ARG A 189 HIS A 197 1 9 HELIX 10 10 HIS A 197 LEU A 205 1 9 SHEET 1 A 5 THR A 33 VAL A 35 0 SHEET 2 A 5 ASP A 98 ASP A 102 1 O ASP A 98 N GLN A 34 SHEET 3 A 5 LEU A 6 SER A 10 1 N TYR A 7 O LEU A 101 SHEET 4 A 5 ARG A 119 LEU A 124 1 O ILE A 121 N ILE A 8 SHEET 5 A 5 TYR A 165 VAL A 168 1 O ILE A 167 N LEU A 124 SHEET 1 B 4 TYR A 54 PHE A 56 0 SHEET 2 B 4 SER A 38 THR A 40 1 N SER A 38 O PHE A 55 SHEET 3 B 4 ASN A 80 SER A 85 -1 O GLY A 83 N HIS A 39 SHEET 4 B 4 PHE A 71 VAL A 77 -1 N GLU A 73 O THR A 84 SITE 1 AC1 8 PRO A 12 SER A 13 GLY A 14 ALA A 15 SITE 2 AC1 8 GLY A 16 LYS A 17 SER A 18 ARG A 138 SITE 1 AC2 14 LYS A 17 SER A 38 ARG A 42 ARG A 45 SITE 2 AC2 14 TYR A 54 GLU A 73 VAL A 77 TYR A 82 SITE 3 AC2 14 GLY A 83 THR A 84 ASP A 102 ILE A 103 SITE 4 AC2 14 ASP A 104 ARG A 149 CRYST1 106.728 106.728 155.276 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009370 0.005410 0.000000 0.00000 SCALE2 0.000000 0.010819 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006440 0.00000