HEADER SERPIN 28-JAN-97 2ANT TITLE THE 2.6 A STRUCTURE OF ANTITHROMBIN INDICATES A CONFORMATIONAL CHANGE TITLE 2 AT THE HEPARIN BINDING SITE CAVEAT 2ANT SER L 112 HAS WRONG CHIRALITY AT ATOM CA NAA L 500 HAS WRONG CAVEAT 2 2ANT CHIRALITY AT ATOM C4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTITHROMBIN; COMPND 3 CHAIN: L, I; COMPND 4 OTHER_DETAILS: ANTITHROMBIN CRYSTALLISED AS A DIMER BETWEEN LATENT COMPND 5 MOLECULE AND ONE ACTIVE MOLECULE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 TISSUE: PLASMA KEYWDS SERPIN, HEPARIN, INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR R.SKINNER,J.-P.ABRAHAMS,J.C.WHISSTOCK,A.M.LESK,R.W.CARRELL, AUTHOR 2 M.R.WARDELL REVDAT 5 09-AUG-23 2ANT 1 REMARK HETSYN REVDAT 4 29-JUL-20 2ANT 1 CAVEAT COMPND REMARK HETNAM REVDAT 4 2 1 LINK SITE REVDAT 3 24-FEB-09 2ANT 1 VERSN REVDAT 2 01-APR-03 2ANT 1 JRNL REVDAT 1 16-JUN-97 2ANT 0 JRNL AUTH R.SKINNER,J.P.ABRAHAMS,J.C.WHISSTOCK,A.M.LESK,R.W.CARRELL, JRNL AUTH 2 M.R.WARDELL JRNL TITL THE 2.6 A STRUCTURE OF ANTITHROMBIN INDICATES A JRNL TITL 2 CONFORMATIONAL CHANGE AT THE HEPARIN BINDING SITE. JRNL REF J.MOL.BIOL. V. 266 601 1997 JRNL REFN ISSN 0022-2836 JRNL PMID 9067613 JRNL DOI 10.1006/JMBI.1996.0798 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.R.WARDELL,R.SKINNER,D.C.CARTER,P.D.TWIGG,J.-P.ABRAHAMS REMARK 1 TITL IMPROVED DIFFRACTION OF ANTITHROMBIN CRYSTALS GROWN IN REMARK 1 TITL 2 MICROGRAVITY REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT 5D REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 74.0 REMARK 3 NUMBER OF REFLECTIONS : 24646 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : RANDOM REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.290 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.300 REMARK 3 FREE R VALUE TEST SET COUNT : 682 REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.2170 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.299 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 3.30 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 682 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 24646 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6529 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 79 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.090 ; NULL ; NULL REMARK 3 BOND ANGLES (DEGREES) : 2.160 ; NULL ; NULL REMARK 3 TORSION ANGLES (DEGREES) : 20.053; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : 0.050 ; NULL ; NULL REMARK 3 GENERAL PLANES (A) : 0.011 ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : NULL ; NULL ; NULL REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : NULL REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2ANT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000177767. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-APR-95 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX7.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.488 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24646 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 74.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.62 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 53.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1ANT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG 4000 50 MM NA/KPO4 PH 6.7 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 49.15500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS L 1 REMARK 465 GLY L 2 REMARK 465 SER L 3 REMARK 465 PRO L 4 REMARK 465 VAL L 5 REMARK 465 ASP L 6 REMARK 465 PRO L 12 REMARK 465 ARG L 13 REMARK 465 PRO L 26 REMARK 465 GLU L 27 REMARK 465 LYS L 28 REMARK 465 LYS L 29 REMARK 465 ALA L 30 REMARK 465 THR L 31 REMARK 465 GLU L 32 REMARK 465 ASP L 33 REMARK 465 GLU L 34 REMARK 465 GLY L 35 REMARK 465 SER L 36 REMARK 465 GLU L 37 REMARK 465 GLN L 38 REMARK 465 LYS L 39 REMARK 465 ILE L 40 REMARK 465 PRO L 41 REMARK 465 GLU L 42 REMARK 465 ASN L 396 REMARK 465 PRO L 397 REMARK 465 ASN L 398 REMARK 465 ARG L 399 REMARK 465 VAL L 400 REMARK 465 THR L 401 REMARK 465 PHE L 402 REMARK 465 LYS L 403 REMARK 465 ALA L 404 REMARK 465 ALA I 30 REMARK 465 THR I 31 REMARK 465 GLU I 32 REMARK 465 ASP I 33 REMARK 465 GLU I 34 REMARK 465 GLY I 35 REMARK 465 SER I 36 REMARK 465 GLU I 37 REMARK 465 GLN I 38 REMARK 465 LYS I 39 REMARK 465 ILE I 40 REMARK 465 PRO I 41 REMARK 465 GLU I 42 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C ARG L 406 CD PRO L 407 1.47 REMARK 500 CG ASN L 155 C1 NAA L 500 1.80 REMARK 500 OD1 ASN L 155 C1 NAA L 500 2.07 REMARK 500 O ALA L 134 O HOH L 519 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG L 261 CB ARG I 13 1554 1.31 REMARK 500 OE2 GLU L 310 NH2 ARG I 47 1554 1.54 REMARK 500 NH1 ARG L 261 CB ARG I 13 1554 1.59 REMARK 500 CZ ARG L 261 CB ARG I 13 1554 1.60 REMARK 500 NH2 ARG L 261 CG ARG I 13 1554 1.83 REMARK 500 CD GLU L 310 NH2 ARG I 47 1554 2.00 REMARK 500 CZ ARG L 261 CG ARG I 13 1554 2.02 REMARK 500 OE2 GLU L 310 CZ ARG I 47 1554 2.13 REMARK 500 NH1 ARG L 261 CG ARG I 13 1554 2.14 REMARK 500 OE1 GLU L 310 NH2 ARG I 47 1554 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU L 104 CD GLU L 104 OE2 0.071 REMARK 500 GLU L 156 CD GLU L 156 OE2 0.067 REMARK 500 GLU L 195 CD GLU L 195 OE2 0.068 REMARK 500 GLU L 232 CD GLU L 232 OE2 0.068 REMARK 500 GLU L 271 CD GLU L 271 OE2 0.067 REMARK 500 GLU I 255 CD GLU I 255 OE2 0.067 REMARK 500 GLU I 310 CD GLU I 310 OE2 0.067 REMARK 500 GLU I 312 CD GLU I 312 OE1 0.068 REMARK 500 GLU I 377 CD GLU I 377 OE2 0.072 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP L 14 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP L 14 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 PRO L 19 C - N - CD ANGL. DEV. = -30.9 DEGREES REMARK 500 ASP L 97 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP L 97 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ASP L 109 CB - CG - OD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 SER L 112 N - CA - CB ANGL. DEV. = 10.1 DEGREES REMARK 500 ASN L 135 C - N - CA ANGL. DEV. = 21.5 DEGREES REMARK 500 ASN L 135 N - CA - C ANGL. DEV. = 27.0 DEGREES REMARK 500 ASN L 135 CA - C - N ANGL. DEV. = -20.7 DEGREES REMARK 500 LYS L 136 C - N - CA ANGL. DEV. = 19.2 DEGREES REMARK 500 ASP L 149 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP L 174 CB - CG - OD2 ANGL. DEV. = -7.0 DEGREES REMARK 500 ASP L 200 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP L 243 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP L 243 CB - CG - OD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 ASP L 277 CB - CG - OD1 ANGL. DEV. = -6.0 DEGREES REMARK 500 ASP L 277 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP L 337 CB - CG - OD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 ARG L 359 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ASP L 360 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ASP L 366 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 PRO L 407 C - N - CA ANGL. DEV. = 25.8 DEGREES REMARK 500 PRO L 407 C - N - CD ANGL. DEV. = -68.5 DEGREES REMARK 500 PRO L 407 CA - N - CD ANGL. DEV. = -14.1 DEGREES REMARK 500 PRO L 407 N - CA - CB ANGL. DEV. = 9.6 DEGREES REMARK 500 PHE L 408 C - N - CA ANGL. DEV. = 16.2 DEGREES REMARK 500 PHE L 408 N - CA - C ANGL. DEV. = 21.3 DEGREES REMARK 500 PRO I 4 C - N - CD ANGL. DEV. = -30.4 DEGREES REMARK 500 PRO I 12 C - N - CD ANGL. DEV. = -16.8 DEGREES REMARK 500 ASP I 74 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP I 74 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 ASP I 117 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ASP I 174 CB - CG - OD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 ASP I 200 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ARG I 261 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG I 261 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ASP I 278 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP I 278 CB - CG - OD2 ANGL. DEV. = -6.6 DEGREES REMARK 500 ASP I 337 CB - CG - OD2 ANGL. DEV. = -5.4 DEGREES REMARK 500 ASP I 342 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP I 342 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ASP I 366 CB - CG - OD1 ANGL. DEV. = 6.7 DEGREES REMARK 500 ASP I 366 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 ARG I 399 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG I 406 NE - CZ - NH1 ANGL. DEV. = 5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS L 8 108.82 -45.33 REMARK 500 THR L 9 69.62 -30.49 REMARK 500 ALA L 10 -33.41 -163.49 REMARK 500 ASN L 18 125.36 -175.40 REMARK 500 MET L 20 -166.66 177.97 REMARK 500 ASN L 96 92.50 -16.61 REMARK 500 ASP L 97 -41.48 106.43 REMARK 500 GLU L 113 89.49 105.95 REMARK 500 LYS L 114 -56.72 -21.40 REMARK 500 THR L 115 89.16 -3.43 REMARK 500 CYS L 128 -70.01 -48.53 REMARK 500 LYS L 133 36.88 20.87 REMARK 500 ASN L 135 -166.29 -43.26 REMARK 500 LYS L 136 21.01 2.77 REMARK 500 LYS L 150 -2.05 -54.48 REMARK 500 ASP L 174 87.28 -69.12 REMARK 500 ASP L 200 16.80 83.38 REMARK 500 SER L 204 -8.32 -47.09 REMARK 500 GLU L 205 15.64 -146.69 REMARK 500 ASP L 243 -3.86 57.11 REMARK 500 GLU L 245 -155.91 -60.15 REMARK 500 ARG L 261 126.15 -173.13 REMARK 500 ASP L 277 -17.58 -40.81 REMARK 500 PRO L 288 128.46 -34.91 REMARK 500 GLU L 289 -10.41 78.00 REMARK 500 PHE L 329 154.64 173.40 REMARK 500 ILE L 354 -55.65 -122.60 REMARK 500 ARG L 359 78.44 -57.75 REMARK 500 ASP L 361 64.70 -174.89 REMARK 500 ARG L 406 146.04 34.89 REMARK 500 PRO L 407 -170.05 51.26 REMARK 500 PHE L 408 140.53 69.22 REMARK 500 VAL L 431 133.80 -17.13 REMARK 500 SER I 3 45.34 105.35 REMARK 500 VAL I 5 -49.85 -19.16 REMARK 500 ASP I 6 -108.06 -34.32 REMARK 500 THR I 9 87.14 61.77 REMARK 500 LYS I 11 -35.86 -165.45 REMARK 500 MET I 20 -33.21 150.62 REMARK 500 CYS I 21 -22.50 -14.89 REMARK 500 ILE I 22 153.67 -33.07 REMARK 500 ARG I 46 31.80 95.60 REMARK 500 ARG I 47 -25.20 -146.94 REMARK 500 ALA I 59 -70.04 -50.23 REMARK 500 ASP I 72 -33.52 -39.66 REMARK 500 ASN I 96 98.05 -13.70 REMARK 500 ASP I 97 -59.17 113.90 REMARK 500 ILE I 111 -178.82 -42.63 REMARK 500 SER I 112 65.87 -106.34 REMARK 500 GLU I 113 -145.27 92.97 REMARK 500 REMARK 500 THIS ENTRY HAS 72 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 NAA L 500 REMARK 615 NAA I 500 DBREF 2ANT L 1 432 UNP P01008 ANT3_HUMAN 33 464 DBREF 2ANT I 1 432 UNP P01008 ANT3_HUMAN 33 464 SEQRES 1 L 432 HIS GLY SER PRO VAL ASP ILE CYS THR ALA LYS PRO ARG SEQRES 2 L 432 ASP ILE PRO MET ASN PRO MET CYS ILE TYR ARG SER PRO SEQRES 3 L 432 GLU LYS LYS ALA THR GLU ASP GLU GLY SER GLU GLN LYS SEQRES 4 L 432 ILE PRO GLU ALA THR ASN ARG ARG VAL TRP GLU LEU SER SEQRES 5 L 432 LYS ALA ASN SER ARG PHE ALA THR THR PHE TYR GLN HIS SEQRES 6 L 432 LEU ALA ASP SER LYS ASN ASP ASN ASP ASN ILE PHE LEU SEQRES 7 L 432 SER PRO LEU SER ILE SER THR ALA PHE ALA MET THR LYS SEQRES 8 L 432 LEU GLY ALA CYS ASN ASP THR LEU GLN GLN LEU MET GLU SEQRES 9 L 432 VAL PHE LYS PHE ASP THR ILE SER GLU LYS THR SER ASP SEQRES 10 L 432 GLN ILE HIS PHE PHE PHE ALA LYS LEU ASN CYS ARG LEU SEQRES 11 L 432 TYR ARG LYS ALA ASN LYS SER SER LYS LEU VAL SER ALA SEQRES 12 L 432 ASN ARG LEU PHE GLY ASP LYS SER LEU THR PHE ASN GLU SEQRES 13 L 432 THR TYR GLN ASP ILE SER GLU LEU VAL TYR GLY ALA LYS SEQRES 14 L 432 LEU GLN PRO LEU ASP PHE LYS GLU ASN ALA GLU GLN SER SEQRES 15 L 432 ARG ALA ALA ILE ASN LYS TRP VAL SER ASN LYS THR GLU SEQRES 16 L 432 GLY ARG ILE THR ASP VAL ILE PRO SER GLU ALA ILE ASN SEQRES 17 L 432 GLU LEU THR VAL LEU VAL LEU VAL ASN THR ILE TYR PHE SEQRES 18 L 432 LYS GLY LEU TRP LYS SER LYS PHE SER PRO GLU ASN THR SEQRES 19 L 432 ARG LYS GLU LEU PHE TYR LYS ALA ASP GLY GLU SER CYS SEQRES 20 L 432 SER ALA SER MET MET TYR GLN GLU GLY LYS PHE ARG TYR SEQRES 21 L 432 ARG ARG VAL ALA GLU GLY THR GLN VAL LEU GLU LEU PRO SEQRES 22 L 432 PHE LYS GLY ASP ASP ILE THR MET VAL LEU ILE LEU PRO SEQRES 23 L 432 LYS PRO GLU LYS SER LEU ALA LYS VAL GLU LYS GLU LEU SEQRES 24 L 432 THR PRO GLU VAL LEU GLN GLU TRP LEU ASP GLU LEU GLU SEQRES 25 L 432 GLU MET MET LEU VAL VAL HIS MET PRO ARG PHE ARG ILE SEQRES 26 L 432 GLU ASP GLY PHE SER LEU LYS GLU GLN LEU GLN ASP MET SEQRES 27 L 432 GLY LEU VAL ASP LEU PHE SER PRO GLU LYS SER LYS LEU SEQRES 28 L 432 PRO GLY ILE VAL ALA GLU GLY ARG ASP ASP LEU TYR VAL SEQRES 29 L 432 SER ASP ALA PHE HIS LYS ALA PHE LEU GLU VAL ASN GLU SEQRES 30 L 432 GLU GLY SER GLU ALA ALA ALA SER THR ALA VAL VAL ILE SEQRES 31 L 432 ALA GLY ARG SER LEU ASN PRO ASN ARG VAL THR PHE LYS SEQRES 32 L 432 ALA ASN ARG PRO PHE LEU VAL PHE ILE ARG GLU VAL PRO SEQRES 33 L 432 LEU ASN THR ILE ILE PHE MET GLY ARG VAL ALA ASN PRO SEQRES 34 L 432 CYS VAL LYS SEQRES 1 I 432 HIS GLY SER PRO VAL ASP ILE CYS THR ALA LYS PRO ARG SEQRES 2 I 432 ASP ILE PRO MET ASN PRO MET CYS ILE TYR ARG SER PRO SEQRES 3 I 432 GLU LYS LYS ALA THR GLU ASP GLU GLY SER GLU GLN LYS SEQRES 4 I 432 ILE PRO GLU ALA THR ASN ARG ARG VAL TRP GLU LEU SER SEQRES 5 I 432 LYS ALA ASN SER ARG PHE ALA THR THR PHE TYR GLN HIS SEQRES 6 I 432 LEU ALA ASP SER LYS ASN ASP ASN ASP ASN ILE PHE LEU SEQRES 7 I 432 SER PRO LEU SER ILE SER THR ALA PHE ALA MET THR LYS SEQRES 8 I 432 LEU GLY ALA CYS ASN ASP THR LEU GLN GLN LEU MET GLU SEQRES 9 I 432 VAL PHE LYS PHE ASP THR ILE SER GLU LYS THR SER ASP SEQRES 10 I 432 GLN ILE HIS PHE PHE PHE ALA LYS LEU ASN CYS ARG LEU SEQRES 11 I 432 TYR ARG LYS ALA ASN LYS SER SER LYS LEU VAL SER ALA SEQRES 12 I 432 ASN ARG LEU PHE GLY ASP LYS SER LEU THR PHE ASN GLU SEQRES 13 I 432 THR TYR GLN ASP ILE SER GLU LEU VAL TYR GLY ALA LYS SEQRES 14 I 432 LEU GLN PRO LEU ASP PHE LYS GLU ASN ALA GLU GLN SER SEQRES 15 I 432 ARG ALA ALA ILE ASN LYS TRP VAL SER ASN LYS THR GLU SEQRES 16 I 432 GLY ARG ILE THR ASP VAL ILE PRO SER GLU ALA ILE ASN SEQRES 17 I 432 GLU LEU THR VAL LEU VAL LEU VAL ASN THR ILE TYR PHE SEQRES 18 I 432 LYS GLY LEU TRP LYS SER LYS PHE SER PRO GLU ASN THR SEQRES 19 I 432 ARG LYS GLU LEU PHE TYR LYS ALA ASP GLY GLU SER CYS SEQRES 20 I 432 SER ALA SER MET MET TYR GLN GLU GLY LYS PHE ARG TYR SEQRES 21 I 432 ARG ARG VAL ALA GLU GLY THR GLN VAL LEU GLU LEU PRO SEQRES 22 I 432 PHE LYS GLY ASP ASP ILE THR MET VAL LEU ILE LEU PRO SEQRES 23 I 432 LYS PRO GLU LYS SER LEU ALA LYS VAL GLU LYS GLU LEU SEQRES 24 I 432 THR PRO GLU VAL LEU GLN GLU TRP LEU ASP GLU LEU GLU SEQRES 25 I 432 GLU MET MET LEU VAL VAL HIS MET PRO ARG PHE ARG ILE SEQRES 26 I 432 GLU ASP GLY PHE SER LEU LYS GLU GLN LEU GLN ASP MET SEQRES 27 I 432 GLY LEU VAL ASP LEU PHE SER PRO GLU LYS SER LYS LEU SEQRES 28 I 432 PRO GLY ILE VAL ALA GLU GLY ARG ASP ASP LEU TYR VAL SEQRES 29 I 432 SER ASP ALA PHE HIS LYS ALA PHE LEU GLU VAL ASN GLU SEQRES 30 I 432 GLU GLY SER GLU ALA ALA ALA SER THR ALA VAL VAL ILE SEQRES 31 I 432 ALA GLY ARG SER LEU ASN PRO ASN ARG VAL THR PHE LYS SEQRES 32 I 432 ALA ASN ARG PRO PHE LEU VAL PHE ILE ARG GLU VAL PRO SEQRES 33 I 432 LEU ASN THR ILE ILE PHE MET GLY ARG VAL ALA ASN PRO SEQRES 34 I 432 CYS VAL LYS MODRES 2ANT ASN L 155 ASN GLYCOSYLATION SITE MODRES 2ANT ASN I 155 ASN GLYCOSYLATION SITE HET NAA L 500 14 HET NAA I 500 14 HETNAM NAA 2-ACETAMIDO-2-DEOXY-BETA-D-ALLOPYRANOSE HETSYN NAA N-ACETYL-BETA-D-ALLOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA-D- HETSYN 2 NAA ALLOSE; 2-ACETAMIDO-2-DEOXY-D-ALLOSE; 2-ACETAMIDO-2- HETSYN 3 NAA DEOXY-ALLOSE; N-ACETYL-D-ALLOSAMINE FORMUL 3 NAA 2(C8 H15 N O6) FORMUL 5 HOH *79(H2 O) HELIX 1 1 ASN L 45 SER L 69 1 25 HELIX 2 2 PRO L 80 GLY L 93 1 14 HELIX 3 3 THR L 98 VAL L 105 1 8 HELIX 4 4 PHE L 108 THR L 110 5 3 HELIX 5 5 SER L 116 TYR L 131 1 16 HELIX 6 6 GLU L 156 VAL L 165 1 10 HELIX 7 7 PHE L 175 LYS L 193 1 19 HELIX 8 8 ALA L 264 GLY L 266 5 3 HELIX 9 9 LEU L 292 GLU L 298 1 7 HELIX 10 10 PRO L 301 GLU L 310 1 10 HELIX 11 11 LYS L 332 ASP L 337 1 6 HELIX 12 12 ASP L 342 PHE L 344 5 3 HELIX 13 13 TRP I 49 ASP I 68 1 20 HELIX 14 14 PRO I 80 GLY I 93 1 14 HELIX 15 15 THR I 98 VAL I 105 1 8 HELIX 16 16 GLN I 118 LEU I 130 1 13 HELIX 17 17 GLU I 156 LEU I 164 1 9 HELIX 18 18 PHE I 175 THR I 194 1 20 HELIX 19 19 PRO I 231 ASN I 233 5 3 HELIX 20 20 LEU I 292 GLU I 298 1 7 HELIX 21 21 PRO I 301 GLU I 310 1 10 HELIX 22 22 LYS I 332 MET I 338 1 7 HELIX 23 23 ASP I 342 PHE I 344 5 3 HELIX 24 24 PRO I 352 ILE I 354 5 3 SHEET 1 A 7 ILE L 76 LEU L 78 0 SHEET 2 A 7 THR L 419 ARG L 425 -1 N ARG L 425 O ILE L 76 SHEET 3 A 7 LEU L 409 GLU L 414 -1 N GLU L 414 O THR L 419 SHEET 4 A 7 ILE L 279 LEU L 285 -1 N ILE L 284 O LEU L 409 SHEET 5 A 7 GLN L 268 PRO L 273 -1 N LEU L 272 O MET L 281 SHEET 6 A 7 MET L 251 ARG L 262 -1 N ARG L 261 O VAL L 269 SHEET 7 A 7 GLU L 312 PRO L 321 -1 N MET L 320 O MET L 252 SHEET 1 B 5 SER L 138 LEU L 146 0 SHEET 2 B 5 VAL L 214 LEU L 224 -1 N LYS L 222 O LYS L 139 SHEET 3 B 5 GLY L 379 ILE L 390 -1 N VAL L 388 O LEU L 215 SHEET 4 B 5 VAL L 364 VAL L 375 -1 N GLU L 374 O GLU L 381 SHEET 5 B 5 PHE L 323 SER L 330 -1 N PHE L 329 O HIS L 369 SHEET 1 C 2 ARG L 235 TYR L 240 0 SHEET 2 C 2 SER L 246 MET L 251 -1 N MET L 251 O ARG L 235 SHEET 1 D 8 ILE I 76 LEU I 78 0 SHEET 2 D 8 THR I 419 VAL I 426 -1 N ARG I 425 O ILE I 76 SHEET 3 D 8 PHE I 408 GLU I 414 -1 N GLU I 414 O THR I 419 SHEET 4 D 8 ILE I 279 LEU I 285 -1 N ILE I 284 O LEU I 409 SHEET 5 D 8 THR I 267 PRO I 273 -1 N LEU I 272 O MET I 281 SHEET 6 D 8 GLU I 255 VAL I 263 -1 N VAL I 263 O THR I 267 SHEET 7 D 8 GLU I 312 HIS I 319 -1 N LEU I 316 O GLY I 256 SHEET 8 D 8 THR I 401 LYS I 403 1 N PHE I 402 O VAL I 317 SHEET 1 E 5 LYS I 169 LEU I 173 0 SHEET 2 E 5 LEU I 140 ASP I 149 1 N LEU I 146 O LYS I 169 SHEET 3 E 5 LEU I 213 PHE I 221 -1 N TYR I 220 O VAL I 141 SHEET 4 E 5 VAL I 364 VAL I 375 1 N SER I 365 O LEU I 213 SHEET 5 E 5 PHE I 323 SER I 330 -1 N PHE I 329 O HIS I 369 SHEET 1 F 2 ARG I 235 TYR I 240 0 SHEET 2 F 2 SER I 246 MET I 251 -1 N MET I 251 O ARG I 235 SSBOND 1 CYS L 8 CYS L 128 1555 1555 1.97 SSBOND 2 CYS L 21 CYS L 95 1555 1555 2.05 SSBOND 3 CYS L 247 CYS L 430 1555 1555 2.05 SSBOND 4 CYS I 8 CYS I 128 1555 1555 2.08 SSBOND 5 CYS I 21 CYS I 95 1555 1555 2.04 SSBOND 6 CYS I 247 CYS I 430 1555 1555 2.05 LINK ND2 ASN L 155 C1 NAA L 500 1555 1555 1.47 LINK ND2 ASN I 155 C1 NAA I 500 1555 1555 1.45 CRYST1 61.410 98.310 90.410 90.00 103.32 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016284 0.000000 0.003855 0.00000 SCALE2 0.000000 0.010172 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011366 0.00000