HEADER SUGAR BINDING PROTEIN 12-AUG-05 2AO3 OBSLTE 02-SEP-08 2AO3 2ZQO TITLE CRYSTAL STRUCTURE OF THE EARTHWORM R-TYPE LECTIN C-HALF COMPND MOL_ID: 1; COMPND 2 MOLECULE: 29-KDA GALACTOSE-BINDING LECTIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LUMBRICUS TERRESTRIS; SOURCE 3 ORGANISM_COMMON: COMMON EARTHWORM; SOURCE 4 GENE: COMMON EARTHWORM; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21 DE3; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET21 KEYWDS EARTHWORM LUMBRICUS TERRESTRIS, HEMAGGLUTININ, R-TYPE KEYWDS 2 LECTIN, BETA-TREFOIL FOLD, SUGAR COMPLEX, SUGAR BINDING KEYWDS 3 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.SUZUKI,A.KUNO,T.HASEGAWA,J.HIRABAYASHI,K.KASAI,M.MOMMA, AUTHOR 2 Z.FUJIMOTO REVDAT 2 02-SEP-08 2AO3 1 OBSLTE REVDAT 1 10-OCT-06 2AO3 0 JRNL AUTH R.SUZUKI,A.KUNO,T.HASEGAWA,J.HIRABAYASHI,K.KASAI, JRNL AUTH 2 M.MOMMA,Z.FUJIMOTO JRNL TITL SUGAR COMPLEX STRUCTURES OF THE GALACTOSE-BINDING JRNL TITL 2 LECTIN EW29 C-HALF DOMAIN FROM THE EARTHWORM JRNL TITL 3 LUMBRICUS TERRESTRIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.HIRABAYASHI,S.K.DUTTA,K.KASAI REMARK 1 TITL NOVEL GALACTOSE-BINDING PROTEINS IN ANNELIDA. REMARK 1 TITL 2 CHARACTERIZATION OF 29-KDA TANDEM REPEAT-TYPE REMARK 1 TITL 3 LECTINS FROM THE EARTHWORM LUMBRICUS TERRESTRIS REMARK 1 REF J.BIOL.CHEM. V. 273 14450 1998 REMARK 1 REFN ASTM JBCHA3 US ISSN 0021-9258 REMARK 1 REFERENCE 2 REMARK 1 AUTH R.SUZUKI,Z.FUJIMOTO,A.KUNO,J.HIRABAYASHI,K.KASAI, REMARK 1 AUTH 2 T.HASEGAWA REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY REMARK 1 TITL 2 CRYSTALLOGRAPHIC STUDIES OF THE C-TERMINAL DOMAIN REMARK 1 TITL 3 OF GALACTOSE-BINDING LECTIN EW29 FROM THE REMARK 1 TITL 4 EARTHWORM LUMBRICUS TERRESTRIS REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 60 1895 2004 REMARK 1 REFN ASTM ABCRE6 DK ISSN 0907-4449 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 21950 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1190 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1494 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1900 REMARK 3 BIN FREE R VALUE SET COUNT : 85 REMARK 3 BIN FREE R VALUE : 0.2540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 ALL ATOMS : 2333 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.159 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.160 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.094 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.955 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.895 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2180 ; 0.026 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1888 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2958 ; 2.144 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4464 ; 1.163 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 258 ; 7.026 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 324 ; 0.200 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2400 ; 0.020 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 394 ; 0.021 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 442 ; 0.279 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2153 ; 0.257 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1147 ; 0.093 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 166 ; 0.139 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 28 ; 0.335 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 69 ; 0.338 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 13 ; 0.192 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1294 ; 1.257 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2096 ; 2.098 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 886 ; 3.132 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 862 ; 4.702 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 0 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 0 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 2AO3 COMPLIES WITH FORMAT V. 3.1, 01-AUG-2007 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ. REMARK 100 THE RCSB ID CODE IS RCSB034117. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-NOV-2004 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23141 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 36.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.30800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 8.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1XYF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CHLORIDE, DIPOTASSIUM REMARK 280 HYDROGEN PHOSPHATE, SODIUM DIHYDROGEN PHOSPHATE, IMIDAZOLE, REMARK 280 CADMIUM CHLORIDE, PH 8.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 1/2+X,1/2+Y,Z REMARK 290 4555 1/2-X,1/2+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 61.60500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 17.37350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 61.60500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 17.37350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK 300 REMARK: MONOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 260 O REMARK 470 GLU B 260 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI REMARK 500 O HOH A 1050 O HOH A 1055 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS B 236 NZ LYS B 246 4555 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 139 CD GLU A 139 OE1 0.074 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 162 CB - CG - OD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 ASP B 162 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 177 -166.69 -78.11 REMARK 500 ASN A 187 11.93 -145.35 REMARK 500 ASN A 217 32.65 -99.24 REMARK 500 ASN B 187 12.47 -148.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M=MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1042 DISTANCE = 5.08 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 MGC A 270 REMARK 610 MGC A 271 REMARK 610 MGC B 1270 REMARK 610 MGC B 1271 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A1004 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 241 NE2 REMARK 620 2 HIS A 241 NE2 174.8 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 SITE_DESCRIPTION: CD BINDING SITE FOR RESIDUE A 1004 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 SITE_DESCRIPTION: MGC BINDING SITE FOR RESIDUE A 270 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 SITE_DESCRIPTION: MGC BINDING SITE FOR RESIDUE A 271 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 SITE_DESCRIPTION: MGC BINDING SITE FOR RESIDUE B 1270 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 SITE_DESCRIPTION: MGC BINDING SITE FOR RESIDUE B 1271 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 SITE_DESCRIPTION: PO4 BINDING SITE FOR RESIDUE A 1002 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 SITE_DESCRIPTION: PO4 BINDING SITE FOR RESIDUE B 1003 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2D12 RELATED DB: PDB DBREF 2AO3 A 131 260 UNP O96048 O96048_LUMTE 131 260 DBREF 2AO3 B 131 260 UNP O96048 O96048_LUMTE 131 260 SEQRES 1 A 130 PRO LYS PHE PHE TYR ILE LYS SER GLU LEU ASN GLY LYS SEQRES 2 A 130 VAL LEU ASP ILE GLU GLY GLN ASN PRO ALA PRO GLY SER SEQRES 3 A 130 LYS ILE ILE THR TRP ASP GLN LYS LYS GLY PRO THR ALA SEQRES 4 A 130 VAL ASN GLN LEU TRP TYR THR ASP GLN GLN GLY VAL ILE SEQRES 5 A 130 ARG SER LYS LEU ASN ASP PHE ALA ILE ASP ALA SER HIS SEQRES 6 A 130 GLU GLN ILE GLU THR GLN PRO PHE ASP PRO ASN ASN PRO SEQRES 7 A 130 LYS ARG ALA TRP ILE VAL SER GLY ASN THR ILE ALA GLN SEQRES 8 A 130 LEU SER ASP ARG ASP ILE VAL LEU ASP ILE ILE LYS SER SEQRES 9 A 130 ASP LYS GLU ALA GLY ALA HIS ILE CYS ALA TRP LYS GLN SEQRES 10 A 130 HIS GLY GLY PRO ASN GLN LYS PHE ILE ILE GLU SER GLU SEQRES 1 B 130 PRO LYS PHE PHE TYR ILE LYS SER GLU LEU ASN GLY LYS SEQRES 2 B 130 VAL LEU ASP ILE GLU GLY GLN ASN PRO ALA PRO GLY SER SEQRES 3 B 130 LYS ILE ILE THR TRP ASP GLN LYS LYS GLY PRO THR ALA SEQRES 4 B 130 VAL ASN GLN LEU TRP TYR THR ASP GLN GLN GLY VAL ILE SEQRES 5 B 130 ARG SER LYS LEU ASN ASP PHE ALA ILE ASP ALA SER HIS SEQRES 6 B 130 GLU GLN ILE GLU THR GLN PRO PHE ASP PRO ASN ASN PRO SEQRES 7 B 130 LYS ARG ALA TRP ILE VAL SER GLY ASN THR ILE ALA GLN SEQRES 8 B 130 LEU SER ASP ARG ASP ILE VAL LEU ASP ILE ILE LYS SER SEQRES 9 B 130 ASP LYS GLU ALA GLY ALA HIS ILE CYS ALA TRP LYS GLN SEQRES 10 B 130 HIS GLY GLY PRO ASN GLN LYS PHE ILE ILE GLU SER GLU HET MGC A 270 15 HET MGC A 271 15 HET MGC B1270 15 HET MGC B1271 15 HET PO4 A1002 5 HET PO4 B1003 5 HET CD A1004 1 HETNAM MGC ALPHA-METHYL-N-ACETYL-D-GALACTOSAMINE HETNAM PO4 PHOSPHATE ION HETNAM CD CADMIUM ION FORMUL 3 MGC 4(C9 H17 N O6) FORMUL 7 PO4 2(O4 P 3-) FORMUL 9 CD CD 2+ FORMUL 10 HOH *200(H2 O) HELIX 1 1 GLY A 149 ASN A 151 5 3 HELIX 2 2 GLY A 166 GLN A 172 5 7 HELIX 3 3 ASN A 207 ARG A 210 5 4 HELIX 4 4 LYS A 233 ASP A 235 5 3 HELIX 5 5 GLY A 250 GLN A 253 5 4 HELIX 6 6 GLY B 149 ASN B 151 5 3 HELIX 7 7 GLY B 166 GLN B 172 5 7 HELIX 8 8 ASN B 207 ARG B 210 5 4 HELIX 9 9 LYS B 233 ASP B 235 5 3 HELIX 10 10 GLY B 250 GLN B 253 5 4 SHEET 1 A 2 PHE A 134 SER A 138 0 SHEET 2 A 2 PHE A 255 SER A 259 -1 O ILE A 256 N LYS A 137 SHEET 1 B 2 VAL A 144 ILE A 147 0 SHEET 2 B 2 ILE A 158 TRP A 161 -1 O ILE A 159 N ASP A 146 SHEET 1 C 2 TRP A 174 THR A 176 0 SHEET 2 C 2 ILE A 182 SER A 184 -1 O ARG A 183 N TYR A 175 SHEET 1 D 2 ALA A 190 ASP A 192 0 SHEET 2 D 2 GLU A 199 GLN A 201 -1 O GLU A 199 N ASP A 192 SHEET 1 E 4 TRP A 212 SER A 215 0 SHEET 2 E 4 THR A 218 GLN A 221 -1 O THR A 218 N SER A 215 SHEET 3 E 4 ASP A 224 ILE A 231 -1 O LEU A 229 N ILE A 219 SHEET 4 E 4 ILE A 242 LYS A 246 -1 O CYS A 243 N ASP A 230 SHEET 1 F 2 PHE B 134 SER B 138 0 SHEET 2 F 2 PHE B 255 SER B 259 -1 O GLU B 258 N TYR B 135 SHEET 1 G 2 VAL B 144 ILE B 147 0 SHEET 2 G 2 ILE B 158 TRP B 161 -1 O TRP B 161 N VAL B 144 SHEET 1 H 2 TRP B 174 THR B 176 0 SHEET 2 H 2 ILE B 182 SER B 184 -1 O ARG B 183 N TYR B 175 SHEET 1 I 2 ALA B 190 ASP B 192 0 SHEET 2 I 2 GLU B 199 GLN B 201 -1 O GLN B 201 N ALA B 190 SHEET 1 J 4 TRP B 212 SER B 215 0 SHEET 2 J 4 THR B 218 GLN B 221 -1 O THR B 218 N SER B 215 SHEET 3 J 4 ASP B 224 ILE B 231 -1 O LEU B 229 N ILE B 219 SHEET 4 J 4 ILE B 242 LYS B 246 -1 O CYS B 243 N ASP B 230 LINK CD CD A1004 NE2 HIS B 241 1555 1555 2.25 LINK CD CD A1004 NE2 HIS A 241 1555 1555 2.25 SITE 1 AC1 1 HIS A 241 SITE 1 AC2 8 ASP A 146 GLY A 149 GLN A 150 LYS A 164 SITE 2 AC2 8 ASN A 171 HOH A1028 HOH B1296 HOH A1037 SITE 1 AC3 9 ASP A 230 LYS A 233 HIS A 248 ASN A 252 SITE 2 AC3 9 HOH A1015 HOH A1049 HOH A1083 HOH A1099 SITE 3 AC3 9 HOH A1103 SITE 1 AC4 8 ASP B 146 GLY B 149 GLN B 150 LYS B 164 SITE 2 AC4 8 ASN B 171 HOH B1298 HOH A1060 HOH B1326 SITE 1 AC5 8 ASP B 230 LYS B 233 HIS B 248 ASN B 252 SITE 2 AC5 8 HOH B1291 HOH B1297 HOH B1318 HOH B1335 SITE 1 AC6 3 ASN A 217 LYS A 254 HOH A1048 SITE 1 AC7 3 ASN B 217 LYS B 254 HOH B1356 CRYST1 123.210 34.747 61.586 90.00 104.20 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008116 0.000000 0.002053 0.00000 SCALE2 0.000000 0.028779 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016749 0.00000