data_2AO4 # _entry.id 2AO4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.280 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2AO4 RCSB RCSB034118 WWPDB D_1000034118 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2006-11-14 _pdbx_database_PDB_obs_spr.pdb_id 2GZL _pdbx_database_PDB_obs_spr.replace_pdb_id 2AO4 _pdbx_database_PDB_obs_spr.details ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1GX1 'The same protein complexed with CDP' unspecified PDB 1KNJ 'The same protein complexed with C5P and CDI' unspecified PDB 1U3P 'The same protein but native' unspecified PDB 2AMT 'The same protein complexed with a CDP derived fluorescent inhibitor' unspecified # _pdbx_database_status.status_code OBS _pdbx_database_status.entry_id 2AO4 _pdbx_database_status.recvd_initial_deposition_date 2005-08-12 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf OBS _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Crane, C.M.' 1 'Kaiser, J.' 2 'Ramsden, N.L.' 3 'Lauw, S.' 4 'Rohdich, F.' 5 'Wolfgang, E.' 6 'Hunter, W.N.' 7 'Bacher, A.' 8 'Diederich, F.' 9 # _citation.id primary _citation.title ;Fluorescent Inhibitors for IspF, an Enzyme in the Non-Mevalonate Pathway for Isoprenoid Biosynthesis and a Potential Target for Antimalarial Therapy. ; _citation.journal_abbrev Angew.Chem.Int.Ed.Engl. _citation.journal_volume 45 _citation.page_first 1069 _citation.page_last 1074 _citation.year 2006 _citation.journal_id_ASTM ACIEAY _citation.country GE _citation.journal_id_ISSN 0570-0833 _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16392111 _citation.pdbx_database_id_DOI 10.1002/anie.200503003 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Crane, C.M.' 1 primary 'Kaiser, J.' 2 primary 'Ramsden, N.L.' 3 primary 'Lauw, S.' 4 primary 'Rohdich, F.' 5 primary 'Eisenreich, W.' 6 primary 'Hunter, W.N.' 7 primary 'Bacher, A.' 8 primary 'Diederich, F.' 9 # _cell.entry_id 2AO4 _cell.length_a 145.098 _cell.length_b 145.098 _cell.length_c 145.098 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2AO4 _symmetry.space_group_name_H-M 'I 21 3' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 199 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man '2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase' 17162.805 1 4.6.1.12 ? ? ? 2 non-polymer syn 'ZINC ION' 65.409 1 ? ? ? ? 3 non-polymer syn "5'-O-{[({[2-({[5-(DIMETHYLAMINO)NAPHTHALEN-1-YL]SULFONYL}AMINO)ETHYL]OXY}PHOSPHINATO)OXY]PHOSPHINATO}CYT" 679.530 1 ? ? ? ? 4 non-polymer syn 'GERANYL DIPHOSPHATE' 314.209 1 ? ? ? ? 5 water nat water 18.015 44 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'MECPS, MECDP-synthase' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;LEMRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLR EAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKAT K ; _entity_poly.pdbx_seq_one_letter_code_can ;LEMRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLR EAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKAT K ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LEU n 1 2 GLU n 1 3 MET n 1 4 ARG n 1 5 ILE n 1 6 GLY n 1 7 HIS n 1 8 GLY n 1 9 PHE n 1 10 ASP n 1 11 VAL n 1 12 HIS n 1 13 ALA n 1 14 PHE n 1 15 GLY n 1 16 GLY n 1 17 GLU n 1 18 GLY n 1 19 PRO n 1 20 ILE n 1 21 ILE n 1 22 ILE n 1 23 GLY n 1 24 GLY n 1 25 VAL n 1 26 ARG n 1 27 ILE n 1 28 PRO n 1 29 TYR n 1 30 GLU n 1 31 LYS n 1 32 GLY n 1 33 LEU n 1 34 LEU n 1 35 ALA n 1 36 HIS n 1 37 SER n 1 38 ASP n 1 39 GLY n 1 40 ASP n 1 41 VAL n 1 42 ALA n 1 43 LEU n 1 44 HIS n 1 45 ALA n 1 46 LEU n 1 47 THR n 1 48 ASP n 1 49 ALA n 1 50 LEU n 1 51 LEU n 1 52 GLY n 1 53 ALA n 1 54 ALA n 1 55 ALA n 1 56 LEU n 1 57 GLY n 1 58 ASP n 1 59 ILE n 1 60 GLY n 1 61 LYS n 1 62 LEU n 1 63 PHE n 1 64 PRO n 1 65 ASP n 1 66 THR n 1 67 ASP n 1 68 PRO n 1 69 ALA n 1 70 PHE n 1 71 LYS n 1 72 GLY n 1 73 ALA n 1 74 ASP n 1 75 SER n 1 76 ARG n 1 77 GLU n 1 78 LEU n 1 79 LEU n 1 80 ARG n 1 81 GLU n 1 82 ALA n 1 83 TRP n 1 84 ARG n 1 85 ARG n 1 86 ILE n 1 87 GLN n 1 88 ALA n 1 89 LYS n 1 90 GLY n 1 91 TYR n 1 92 THR n 1 93 LEU n 1 94 GLY n 1 95 ASN n 1 96 VAL n 1 97 ASP n 1 98 VAL n 1 99 THR n 1 100 ILE n 1 101 ILE n 1 102 ALA n 1 103 GLN n 1 104 ALA n 1 105 PRO n 1 106 LYS n 1 107 MET n 1 108 LEU n 1 109 PRO n 1 110 HIS n 1 111 ILE n 1 112 PRO n 1 113 GLN n 1 114 MET n 1 115 ARG n 1 116 VAL n 1 117 PHE n 1 118 ILE n 1 119 ALA n 1 120 GLU n 1 121 ASP n 1 122 LEU n 1 123 GLY n 1 124 CYS n 1 125 HIS n 1 126 MET n 1 127 ASP n 1 128 ASP n 1 129 VAL n 1 130 ASN n 1 131 VAL n 1 132 LYS n 1 133 ALA n 1 134 THR n 1 135 THR n 1 136 THR n 1 137 GLU n 1 138 LYS n 1 139 LEU n 1 140 GLY n 1 141 PHE n 1 142 THR n 1 143 GLY n 1 144 ARG n 1 145 GLY n 1 146 GLU n 1 147 GLY n 1 148 ILE n 1 149 ALA n 1 150 CYS n 1 151 GLU n 1 152 ALA n 1 153 VAL n 1 154 ALA n 1 155 LEU n 1 156 LEU n 1 157 ILE n 1 158 LYS n 1 159 ALA n 1 160 THR n 1 161 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name bacteria _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'ispF, mecS' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id ? _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name bacteria _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET15b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name SWS _struct_ref.db_code ISPF_ECOLI _struct_ref.pdbx_db_accession P62617 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREA WRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2AO4 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 161 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P62617 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 159 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 159 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2AO4 LEU A 1 ? SWS P62617 ? ? 'CLONING ARTIFACT' -1 1 1 2AO4 GLU A 2 ? SWS P62617 ? ? 'CLONING ARTIFACT' 0 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 2AA non-polymer . "5'-O-{[({[2-({[5-(DIMETHYLAMINO)NAPHTHALEN-1-YL]SULFONYL}AMINO)ETHYL]OXY}PHOSPHINATO)OXY]PHOSPHINATO}CYT" ? 'C23 H31 N5 O13 P2 S' 679.530 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GPP non-polymer . 'GERANYL DIPHOSPHATE' ? 'C10 H20 O7 P2' 314.209 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.entry_id 2AO4 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 7.1 _exptl_crystal.density_percent_sol 82.83 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 290 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5 _exptl_crystal_grow.pdbx_details '0.1M ammonium sulfate, 8% PEG 200 MME, 0.1M sodium acetate,, pH 5, VAPOR DIFFUSION, HANGING DROP, temperature 290K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC Q210 2D' _diffrn_detector.pdbx_collection_date 2004-11-06 _diffrn_detector.details mirror # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator Silicon _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9330 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID29' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID29 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9330 # _reflns.entry_id 2AO4 _reflns.observed_criterion_sigma_I 3.0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 28.5 _reflns.d_resolution_high 2.5 _reflns.number_obs 17715 _reflns.number_all 17745 _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_netI_over_sigmaI ? # _reflns_shell.d_res_high 2.50 _reflns_shell.d_res_low 2.64 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.685 _reflns_shell.pdbx_Rsym_value 0.685 _reflns_shell.meanI_over_sigI_obs 2.9 _reflns_shell.pdbx_redundancy 8.6 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2AO4 _refine.ls_number_reflns_obs 16813 _refine.ls_number_reflns_all 17745 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 28.5 _refine.ls_d_res_high 2.50 _refine.ls_percent_reflns_obs 99.99 _refine.ls_R_factor_obs 0.22285 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.22135 _refine.ls_R_factor_R_free 0.25126 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 902 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.935 _refine.correlation_coeff_Fo_to_Fc_free 0.909 _refine.B_iso_mean 52.797 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 1GX1 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.188 _refine.pdbx_overall_ESU_R_Free 0.178 _refine.overall_SU_ML 0.128 _refine.overall_SU_B 5.516 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1188 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 64 _refine_hist.number_atoms_solvent 44 _refine_hist.number_atoms_total 1296 _refine_hist.d_res_high 2.50 _refine_hist.d_res_low 28.5 _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.009 0.022 ? 1275 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.226 2.032 ? 1732 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 9.551 5.000 ? 158 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 37.345 23.673 ? 49 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 17.541 15.000 ? 202 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 19.204 15.000 ? 8 'X-RAY DIFFRACTION' ? r_chiral_restr 0.088 0.200 ? 195 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.020 ? 944 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.252 0.200 ? 596 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.307 0.200 ? 864 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.143 0.200 ? 55 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined 0.073 0.200 ? 1 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.181 0.200 ? 59 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.140 0.200 ? 11 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.331 1.500 ? 805 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.855 2.000 ? 1240 'X-RAY DIFFRACTION' ? r_scbond_it 1.519 3.000 ? 541 'X-RAY DIFFRACTION' ? r_scangle_it 2.715 4.500 ? 492 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.501 _refine_ls_shell.d_res_low 2.565 _refine_ls_shell.number_reflns_R_work 1252 _refine_ls_shell.R_factor_R_work 0.299 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.272 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 46 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2AO4 _struct.title 'Structure of 2C-Methyl-D-Erythritol 2,4-Clycodiphosphate Synthase complexed with a CDP derived fluorescent inhibitor' _struct.pdbx_descriptor '2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (E.C.4.6.1.12)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2AO4 _struct_keywords.pdbx_keywords LYASE _struct_keywords.text 'ISOPRENOID, LYASE, ISOPRENE BIOSYNTHESIS' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? # _struct_biol.id 1 _struct_biol.details 'The biological assembly is a trimer generated from a monomer in the asymetric unit' _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 40 ? ALA A 54 ? ASP A 38 ALA A 52 1 ? 15 HELX_P HELX_P2 2 ASP A 74 ? LYS A 89 ? ASP A 72 LYS A 87 1 ? 16 HELX_P HELX_P3 3 MET A 107 ? PRO A 109 ? MET A 105 PRO A 107 5 ? 3 HELX_P HELX_P4 4 HIS A 110 ? GLY A 123 ? HIS A 108 GLY A 121 1 ? 14 HELX_P HELX_P5 5 HIS A 125 ? ASP A 127 ? HIS A 123 ASP A 125 5 ? 3 HELX_P HELX_P6 6 LEU A 139 ? ARG A 144 ? LEU A 137 ARG A 142 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ALA _struct_mon_prot_cis.label_seq_id 104 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ALA _struct_mon_prot_cis.auth_seq_id 102 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 105 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 103 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 0.30 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLY A 32 ? LEU A 33 ? GLY A 30 LEU A 31 A 2 GLU A 2 ? GLY A 15 ? GLU A 0 GLY A 13 A 3 GLY A 147 ? LYS A 158 ? GLY A 145 LYS A 156 A 4 TYR A 91 ? ILE A 101 ? TYR A 89 ILE A 99 A 5 VAL A 129 ? THR A 134 ? VAL A 127 THR A 132 B 1 ILE A 20 ? ILE A 22 ? ILE A 18 ILE A 20 B 2 VAL A 25 ? ILE A 27 ? VAL A 23 ILE A 25 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLY A 32 ? O GLY A 30 N GLY A 15 ? N GLY A 13 A 2 3 N ARG A 4 ? N ARG A 2 O LEU A 156 ? O LEU A 154 A 3 4 O GLU A 151 ? O GLU A 149 N THR A 99 ? N THR A 97 A 4 5 N ILE A 100 ? N ILE A 98 O LYS A 132 ? O LYS A 130 B 1 2 N ILE A 20 ? N ILE A 18 O ILE A 27 ? O ILE A 25 # _database_PDB_matrix.entry_id 2AO4 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2AO4 _atom_sites.fract_transf_matrix[1][1] 0.006892 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.006892 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006892 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LEU 1 -1 -1 LEU LEU A . n A 1 2 GLU 2 0 0 GLU GLU A . n A 1 3 MET 3 1 1 MET MET A . n A 1 4 ARG 4 2 2 ARG ARG A . n A 1 5 ILE 5 3 3 ILE ILE A . n A 1 6 GLY 6 4 4 GLY GLY A . n A 1 7 HIS 7 5 5 HIS HIS A . n A 1 8 GLY 8 6 6 GLY GLY A . n A 1 9 PHE 9 7 7 PHE PHE A . n A 1 10 ASP 10 8 8 ASP ASP A . n A 1 11 VAL 11 9 9 VAL VAL A . n A 1 12 HIS 12 10 10 HIS HIS A . n A 1 13 ALA 13 11 11 ALA ALA A . n A 1 14 PHE 14 12 12 PHE PHE A . n A 1 15 GLY 15 13 13 GLY GLY A . n A 1 16 GLY 16 14 14 GLY GLY A . n A 1 17 GLU 17 15 15 GLU GLU A . n A 1 18 GLY 18 16 16 GLY GLY A . n A 1 19 PRO 19 17 17 PRO PRO A . n A 1 20 ILE 20 18 18 ILE ILE A . n A 1 21 ILE 21 19 19 ILE ILE A . n A 1 22 ILE 22 20 20 ILE ILE A . n A 1 23 GLY 23 21 21 GLY GLY A . n A 1 24 GLY 24 22 22 GLY GLY A . n A 1 25 VAL 25 23 23 VAL VAL A . n A 1 26 ARG 26 24 24 ARG ARG A . n A 1 27 ILE 27 25 25 ILE ILE A . n A 1 28 PRO 28 26 26 PRO PRO A . n A 1 29 TYR 29 27 27 TYR TYR A . n A 1 30 GLU 30 28 28 GLU GLU A . n A 1 31 LYS 31 29 29 LYS LYS A . n A 1 32 GLY 32 30 30 GLY GLY A . n A 1 33 LEU 33 31 31 LEU LEU A . n A 1 34 LEU 34 32 32 LEU LEU A . n A 1 35 ALA 35 33 33 ALA ALA A . n A 1 36 HIS 36 34 34 HIS HIS A . n A 1 37 SER 37 35 35 SER SER A . n A 1 38 ASP 38 36 36 ASP ASP A . n A 1 39 GLY 39 37 37 GLY GLY A . n A 1 40 ASP 40 38 38 ASP ASP A . n A 1 41 VAL 41 39 39 VAL VAL A . n A 1 42 ALA 42 40 40 ALA ALA A . n A 1 43 LEU 43 41 41 LEU LEU A . n A 1 44 HIS 44 42 42 HIS HIS A . n A 1 45 ALA 45 43 43 ALA ALA A . n A 1 46 LEU 46 44 44 LEU LEU A . n A 1 47 THR 47 45 45 THR THR A . n A 1 48 ASP 48 46 46 ASP ASP A . n A 1 49 ALA 49 47 47 ALA ALA A . n A 1 50 LEU 50 48 48 LEU LEU A . n A 1 51 LEU 51 49 49 LEU LEU A . n A 1 52 GLY 52 50 50 GLY GLY A . n A 1 53 ALA 53 51 51 ALA ALA A . n A 1 54 ALA 54 52 52 ALA ALA A . n A 1 55 ALA 55 53 53 ALA ALA A . n A 1 56 LEU 56 54 54 LEU LEU A . n A 1 57 GLY 57 55 55 GLY GLY A . n A 1 58 ASP 58 56 56 ASP ASP A . n A 1 59 ILE 59 57 57 ILE ILE A . n A 1 60 GLY 60 58 58 GLY GLY A . n A 1 61 LYS 61 59 59 LYS LYS A . n A 1 62 LEU 62 60 60 LEU LEU A . n A 1 63 PHE 63 61 61 PHE PHE A . n A 1 64 PRO 64 62 62 PRO PRO A . n A 1 65 ASP 65 63 63 ASP ASP A . n A 1 66 THR 66 64 64 THR THR A . n A 1 67 ASP 67 65 65 ASP ASP A . n A 1 68 PRO 68 66 66 PRO PRO A . n A 1 69 ALA 69 67 67 ALA ALA A . n A 1 70 PHE 70 68 68 PHE PHE A . n A 1 71 LYS 71 69 69 LYS LYS A . n A 1 72 GLY 72 70 70 GLY GLY A . n A 1 73 ALA 73 71 71 ALA ALA A . n A 1 74 ASP 74 72 72 ASP ASP A . n A 1 75 SER 75 73 73 SER SER A . n A 1 76 ARG 76 74 74 ARG ARG A . n A 1 77 GLU 77 75 75 GLU GLU A . n A 1 78 LEU 78 76 76 LEU LEU A . n A 1 79 LEU 79 77 77 LEU LEU A . n A 1 80 ARG 80 78 78 ARG ARG A . n A 1 81 GLU 81 79 79 GLU GLU A . n A 1 82 ALA 82 80 80 ALA ALA A . n A 1 83 TRP 83 81 81 TRP TRP A . n A 1 84 ARG 84 82 82 ARG ARG A . n A 1 85 ARG 85 83 83 ARG ARG A . n A 1 86 ILE 86 84 84 ILE ILE A . n A 1 87 GLN 87 85 85 GLN GLN A . n A 1 88 ALA 88 86 86 ALA ALA A . n A 1 89 LYS 89 87 87 LYS LYS A . n A 1 90 GLY 90 88 88 GLY GLY A . n A 1 91 TYR 91 89 89 TYR TYR A . n A 1 92 THR 92 90 90 THR THR A . n A 1 93 LEU 93 91 91 LEU LEU A . n A 1 94 GLY 94 92 92 GLY GLY A . n A 1 95 ASN 95 93 93 ASN ASN A . n A 1 96 VAL 96 94 94 VAL VAL A . n A 1 97 ASP 97 95 95 ASP ASP A . n A 1 98 VAL 98 96 96 VAL VAL A . n A 1 99 THR 99 97 97 THR THR A . n A 1 100 ILE 100 98 98 ILE ILE A . n A 1 101 ILE 101 99 99 ILE ILE A . n A 1 102 ALA 102 100 100 ALA ALA A . n A 1 103 GLN 103 101 101 GLN GLN A . n A 1 104 ALA 104 102 102 ALA ALA A . n A 1 105 PRO 105 103 103 PRO PRO A . n A 1 106 LYS 106 104 104 LYS LYS A . n A 1 107 MET 107 105 105 MET MET A . n A 1 108 LEU 108 106 106 LEU LEU A . n A 1 109 PRO 109 107 107 PRO PRO A . n A 1 110 HIS 110 108 108 HIS HIS A . n A 1 111 ILE 111 109 109 ILE ILE A . n A 1 112 PRO 112 110 110 PRO PRO A . n A 1 113 GLN 113 111 111 GLN GLN A . n A 1 114 MET 114 112 112 MET MET A . n A 1 115 ARG 115 113 113 ARG ARG A . n A 1 116 VAL 116 114 114 VAL VAL A . n A 1 117 PHE 117 115 115 PHE PHE A . n A 1 118 ILE 118 116 116 ILE ILE A . n A 1 119 ALA 119 117 117 ALA ALA A . n A 1 120 GLU 120 118 118 GLU GLU A . n A 1 121 ASP 121 119 119 ASP ASP A . n A 1 122 LEU 122 120 120 LEU LEU A . n A 1 123 GLY 123 121 121 GLY GLY A . n A 1 124 CYS 124 122 122 CYS CYS A . n A 1 125 HIS 125 123 123 HIS HIS A . n A 1 126 MET 126 124 124 MET MET A . n A 1 127 ASP 127 125 125 ASP ASP A . n A 1 128 ASP 128 126 126 ASP ASP A . n A 1 129 VAL 129 127 127 VAL VAL A . n A 1 130 ASN 130 128 128 ASN ASN A . n A 1 131 VAL 131 129 129 VAL VAL A . n A 1 132 LYS 132 130 130 LYS LYS A . n A 1 133 ALA 133 131 131 ALA ALA A . n A 1 134 THR 134 132 132 THR THR A . n A 1 135 THR 135 133 133 THR THR A . n A 1 136 THR 136 134 134 THR THR A . n A 1 137 GLU 137 135 135 GLU GLU A . n A 1 138 LYS 138 136 136 LYS LYS A . n A 1 139 LEU 139 137 137 LEU LEU A . n A 1 140 GLY 140 138 138 GLY GLY A . n A 1 141 PHE 141 139 139 PHE PHE A . n A 1 142 THR 142 140 140 THR THR A . n A 1 143 GLY 143 141 141 GLY GLY A . n A 1 144 ARG 144 142 142 ARG ARG A . n A 1 145 GLY 145 143 143 GLY GLY A . n A 1 146 GLU 146 144 144 GLU GLU A . n A 1 147 GLY 147 145 145 GLY GLY A . n A 1 148 ILE 148 146 146 ILE ILE A . n A 1 149 ALA 149 147 147 ALA ALA A . n A 1 150 CYS 150 148 148 CYS CYS A . n A 1 151 GLU 151 149 149 GLU GLU A . n A 1 152 ALA 152 150 150 ALA ALA A . n A 1 153 VAL 153 151 151 VAL VAL A . n A 1 154 ALA 154 152 152 ALA ALA A . n A 1 155 LEU 155 153 153 LEU LEU A . n A 1 156 LEU 156 154 154 LEU LEU A . n A 1 157 ILE 157 155 155 ILE ILE A . n A 1 158 LYS 158 156 156 LYS LYS A . n A 1 159 ALA 159 157 157 ALA ALA A . n A 1 160 THR 160 158 ? ? ? A . n A 1 161 LYS 161 159 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN 1 900 900 ZN ZN ? . C 3 2AA 1 901 901 2AA 2AA ? . D 4 GPP 1 903 903 GPP GPP ? . E 5 HOH 1 1 1 HOH HOH ? . E 5 HOH 2 2 2 HOH HOH ? . E 5 HOH 3 4 4 HOH HOH ? . E 5 HOH 4 5 5 HOH HOH ? . E 5 HOH 5 6 6 HOH HOH ? . E 5 HOH 6 7 7 HOH HOH ? . E 5 HOH 7 8 8 HOH HOH ? . E 5 HOH 8 9 9 HOH HOH ? . E 5 HOH 9 10 10 HOH HOH ? . E 5 HOH 10 11 11 HOH HOH ? . E 5 HOH 11 12 12 HOH HOH ? . E 5 HOH 12 13 13 HOH HOH ? . E 5 HOH 13 14 14 HOH HOH ? . E 5 HOH 14 15 15 HOH HOH ? . E 5 HOH 15 16 16 HOH HOH ? . E 5 HOH 16 17 17 HOH HOH ? . E 5 HOH 17 18 18 HOH HOH ? . E 5 HOH 18 19 19 HOH HOH ? . E 5 HOH 19 20 20 HOH HOH ? . E 5 HOH 20 21 21 HOH HOH ? . E 5 HOH 21 22 22 HOH HOH ? . E 5 HOH 22 23 23 HOH HOH ? . E 5 HOH 23 24 24 HOH HOH ? . E 5 HOH 24 25 25 HOH HOH ? . E 5 HOH 25 26 26 HOH HOH ? . E 5 HOH 26 27 27 HOH HOH ? . E 5 HOH 27 28 28 HOH HOH ? . E 5 HOH 28 29 29 HOH HOH ? . E 5 HOH 29 30 30 HOH HOH ? . E 5 HOH 30 31 31 HOH HOH ? . E 5 HOH 31 32 32 HOH HOH ? . E 5 HOH 32 33 33 HOH HOH ? . E 5 HOH 33 34 34 HOH HOH ? . E 5 HOH 34 35 35 HOH HOH ? . E 5 HOH 35 36 36 HOH HOH ? . E 5 HOH 36 37 37 HOH HOH ? . E 5 HOH 37 38 38 HOH HOH ? . E 5 HOH 38 39 39 HOH HOH ? . E 5 HOH 39 40 40 HOH HOH ? . E 5 HOH 40 41 41 HOH HOH ? . E 5 HOH 41 42 42 HOH HOH ? . E 5 HOH 42 43 43 HOH HOH ? . E 5 HOH 43 44 44 HOH HOH ? . E 5 HOH 44 45 45 HOH HOH ? . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-02-28 2 'Structure model' 1 1 2006-11-14 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 2 'Structure model' repository Obsolete ? # _software.name REFMAC _software.classification refinement _software.version 5.2.0005 _software.citation_id ? _software.pdbx_ordinal 1 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 CE1 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HIS _pdbx_validate_close_contact.auth_seq_id_1 34 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 PHE _pdbx_validate_close_contact.auth_seq_id_2 68 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.18 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 C _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ASP _pdbx_validate_rmsd_angle.auth_seq_id_1 65 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 N _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 PRO _pdbx_validate_rmsd_angle.auth_seq_id_2 66 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CD _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 PRO _pdbx_validate_rmsd_angle.auth_seq_id_3 66 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 110.23 _pdbx_validate_rmsd_angle.angle_target_value 128.40 _pdbx_validate_rmsd_angle.angle_deviation -18.17 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.10 _pdbx_validate_rmsd_angle.linker_flag Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 15 ? ? -138.83 -152.65 2 1 SER A 35 ? ? 178.57 -177.86 3 1 ASP A 36 ? ? -29.35 -50.46 4 1 LEU A 60 ? ? -155.28 11.91 5 1 PRO A 62 ? ? -29.70 46.37 6 1 ASP A 63 ? ? 51.61 -145.17 7 1 ASP A 65 ? ? 51.17 -146.72 8 1 PRO A 66 ? ? -8.10 -158.18 9 1 ALA A 67 ? ? 66.54 -3.89 10 1 PHE A 68 ? ? -158.34 82.31 11 1 LYS A 69 ? ? -143.07 -31.68 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 GLY A 55 ? ? ASP A 56 ? ? -146.48 2 1 LEU A 60 ? ? PHE A 61 ? ? 146.36 3 1 PHE A 61 ? ? PRO A 62 ? ? 144.15 4 1 ASP A 63 ? ? THR A 64 ? ? 78.54 5 1 THR A 64 ? ? ASP A 65 ? ? -130.01 6 1 ASP A 65 ? ? PRO A 66 ? ? -124.53 7 1 ALA A 67 ? ? PHE A 68 ? ? -146.58 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 1 . 2AA 901 ? "C9'" ? C 2AA 1 "C9'" 2 1 N 1 . 2AA 901 ? "C8'" ? C 2AA 1 "C8'" 3 1 N 1 . 2AA 901 ? "C7'" ? C 2AA 1 "C7'" 4 1 N 1 . 2AA 901 ? "C6'" ? C 2AA 1 "C6'" 5 1 N 1 . 2AA 901 ? "C5'" ? C 2AA 1 "C5'" 6 1 N 1 . 2AA 901 ? "C4'" ? C 2AA 1 "C4'" 7 1 N 1 . 2AA 901 ? "C3'" ? C 2AA 1 "C3'" 8 1 N 1 . 2AA 901 ? "C2'" ? C 2AA 1 "C2'" 9 1 N 1 . 2AA 901 ? "O3'" ? C 2AA 1 "O3'" 10 1 N 1 . 2AA 901 ? "O4'" ? C 2AA 1 "O4'" 11 1 N 1 . 2AA 901 ? "C1'" ? C 2AA 1 "C1'" 12 1 N 1 . 2AA 901 ? "O2'" ? C 2AA 1 "O2'" 13 1 N 1 . 2AA 901 ? "O1'" ? C 2AA 1 "O1'" # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A THR 158 ? A THR 160 2 1 Y 1 A LYS 159 ? A LYS 161 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ZINC ION' ZN 3 "5'-O-{[({[2-({[5-(DIMETHYLAMINO)NAPHTHALEN-1-YL]SULFONYL}AMINO)ETHYL]OXY}PHOSPHINATO)OXY]PHOSPHINATO}CYT" 2AA 4 'GERANYL DIPHOSPHATE' GPP 5 water HOH #